aa75dadab8
gnu: vim: Update to 8.1.0026.
...
* gnu/packages/vim.scm (vim): Update to 8.1.0026.
[arguments]: Update substitute list on custom 'patch-config-files phase.
[inputs]: Remove inetutils.
2018-06-02 23:34:37 +03:00
2d4fdb707e
gnu: xxd: Return true from all phases.
...
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir
phase.
2018-06-02 22:34:23 +03:00
15dcd292df
gnu: Add emacs-fish-completion.
...
* gnu/packages/emacs.scm (emacs-fish-completion): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:52 +02:00
e374010923
gnu: Add emacs-evil-org.
...
* gnu/packages/emacs.scm (emacs-evil-org): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
ac85107c9f
gnu: Add emacs-evil-multiedit.
...
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
e1e09bcb43
gnu: Add emacs-evil-mu4e.
...
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
c6c1f0bf41
gnu: Add emacs-evil-magit.
...
* gnu/packages/emacs.scm (emacs-evil-magit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
22deb03439
gnu: Add emacs-evil-ediff.
...
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
f52ef55e2b
gnu: guile-json: Update to 1.0.1.
...
* gnu/packages/guile.scm (guile-json): Update to 1.0.1.
[source]: Switch to github.com. Adjust 'snippet' to modify
'configure.ac' and 'Makefile.am'.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
2018-06-02 15:29:38 +02:00
e0f8970357
Merge branch 'master' into core-updates
2018-06-02 13:44:43 +02:00
92963798a6
gnu: r-scater: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.
2018-06-02 13:42:05 +02:00
83402242ea
gnu: r-mvtnorm: Update to 1.0-8.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
2018-06-02 13:39:13 +02:00
7799a01ef1
gnu: r-rgraphviz: Update to 2.24.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
2018-06-02 13:39:13 +02:00
d7e3299987
gnu: r-scran: Update to 1.8.2.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02 13:39:13 +02:00
8ec56b2956
gnu: r-delayedmatrixstats: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
d99e0938fa
gnu: r-singlecellexperiment: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
fd613234b7
gnu: r-beachmat: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.
2018-06-02 13:39:12 +02:00
e9c417361e
gnu: r-rhdf5lib: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
2018-06-02 13:39:12 +02:00
0840352835
gnu: r-hdf5array: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02 13:39:12 +02:00
5cd725d002
gnu: r-qvalue: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
c6c619c179
gnu: r-hitc: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
4dedecbe70
gnu: r-fithic: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02 13:39:12 +02:00
8db6256f4b
gnu: r-sushi: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02 13:39:12 +02:00
2d3c172b72
gnu: r-gwascat: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
fecbbac286
gnu: r-gviz: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
6929b97583
gnu: r-gqtlstats: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02 13:39:12 +02:00
45c29a6e5c
gnu: r-ldblock: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
2018-06-02 13:39:12 +02:00
9b0b108ed9
gnu: r-erma: Update to 0.12.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
2018-06-02 13:39:12 +02:00
d26f95d079
gnu: r-snpstats: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02 13:39:12 +02:00
dcd1f0236c
gnu: r-gqtlbase: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02 13:39:12 +02:00
e214a6e6ff
gnu: r-ggbio: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
34cc18d4de
gnu: r-biovizbase: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
94ae875c0a
gnu: r-organismdbi: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
bbcd19fb4d
gnu: r-ensembldb: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.
2018-06-02 13:39:11 +02:00
19adb89854
gnu: r-dirichletmultinomial: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
d3fb2ad834
gnu: r-complexheatmap: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
d1463f1b0c
gnu: r-genomicfiles: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
2018-06-02 13:39:11 +02:00
1ba126e0e4
gnu: r-gage: Update to 2.30.0.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
2018-06-02 13:39:11 +02:00
419e438d52
gnu: r-keggrest: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
2018-06-02 13:39:11 +02:00
15cc1a6867
gnu: r-fastseg: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
2018-06-02 13:39:11 +02:00
646439c7e3
gnu: r-annotationhub: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
2018-06-02 13:39:11 +02:00
420415b057
gnu: r-interactivedisplaybase: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
a67dd4c5e9
gnu: r-edaseq: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
2018-06-02 13:39:11 +02:00
749b712677
gnu: r-deseq: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
2018-06-02 13:39:11 +02:00
0ebd7a4c9f
gnu: r-aroma-light: Update to 3.10.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
2018-06-02 13:39:11 +02:00
bdc8b40af2
gnu: r-msnid: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
2018-06-02 13:39:10 +02:00
250d78eac9
gnu: r-msnbase: Update to 2.6.1.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1.
[propagated-inputs]: Add r-mass and r-scales.
2018-06-02 13:39:10 +02:00
0f773b90db
gnu: r-pcamethods: Update to 1.72.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.72.0.
2018-06-02 13:39:10 +02:00
7bd2582971
gnu: r-mzid: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.18.0.
2018-06-02 13:39:10 +02:00
af8710624d
gnu: r-vsn: Update to 3.48.1.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.48.1.
2018-06-02 13:39:10 +02:00
5837f1835b
gnu: r-affy: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.58.0.
[inputs]: Add zlib.
2018-06-02 13:39:10 +02:00
82589f7430
gnu: r-affyio: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.50.0.
2018-06-02 13:39:10 +02:00
39cc491790
gnu: r-mzr: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.14.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2018-06-02 13:39:10 +02:00
a02b82088f
gnu: r-protgenerics: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.12.0.
2018-06-02 13:39:10 +02:00
9547dd8613
gnu: r-sva: Update to 3.28.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.28.0.
2018-06-02 13:39:10 +02:00
19ad568e79
gnu: r-methylkit: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.0.
2018-06-02 13:39:10 +02:00
aae4f716da
gnu: r-copywriter: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.12.0.
2018-06-02 13:39:10 +02:00
8f94487da7
gnu: r-chipseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.30.0.
2018-06-02 13:39:10 +02:00
62509bbc81
gnu: r-annotationfilter: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.4.0.
2018-06-02 13:39:10 +02:00
d73c5728f3
gnu: r-rhdf5: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
2018-06-02 13:39:10 +02:00
c76e8baf9e
gnu: r-tximport: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.
2018-06-02 13:39:10 +02:00
b6c2c8f781
gnu: r-mutationalpatterns: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.
2018-06-02 13:39:09 +02:00
72f11ff9c5
gnu: r-bamsignals: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
1a08bb8a17
gnu: r-rhtslib: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.
2018-06-02 13:39:09 +02:00
2c480bb012
gnu: r-zlibbioc: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.
2018-06-02 13:39:09 +02:00
7e6537e257
gnu: r-motifrg: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.
2018-06-02 13:39:09 +02:00
8217c2d0bc
gnu: r-seqlogo: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.
2018-06-02 13:39:09 +02:00
17d35de73f
gnu: r-genomation: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
5229cedf57
gnu: r-seqpattern: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
25d1df5764
gnu: r-impute: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.54.0.
2018-06-02 13:39:09 +02:00
89ef133ebd
gnu: r-bsgenome: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.48.0.
2018-06-02 13:39:09 +02:00
f2eb2e453e
gnu: r-topgo: Update to 2.32.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.32.0.
2018-06-02 13:39:09 +02:00
2f66fecd89
gnu: r-graph: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.58.0.
2018-06-02 13:39:09 +02:00
b4ad4ec6b4
gnu: r-genomicfeatures: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.0.
[propagated-inputs]: Remove r-rmysql.
2018-06-02 13:39:09 +02:00
a30df29768
gnu: r-rtracklayer: Update to 1.40.2.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.2.
[native-inputs]: Add pkg-config.
2018-06-02 13:39:09 +02:00
90102bd06b
gnu: r-genomicalignments: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
2018-06-02 13:39:09 +02:00
9bf4110ea1
gnu: r-summarizedexperiment: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
2018-06-02 13:39:08 +02:00
82f593f378
gnu: r-delayedarray: Update to 0.6.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:08 +02:00
d2367a89dd
gnu: r-rsamtools: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
2018-06-02 13:39:08 +02:00
942655add1
gnu: r-biostrings: Update to 2.48.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
2018-06-02 13:39:08 +02:00
e6eac58d4c
gnu: r-biocparallel: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
2018-06-02 13:39:08 +02:00
1763cba80e
gnu: r-biomart: Update to 2.36.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
2018-06-02 13:39:08 +02:00
77f66feee7
gnu: r-annotationdbi: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
2018-06-02 13:39:08 +02:00
6fd71f1b6a
gnu: r-biobase: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
2018-06-02 13:39:08 +02:00
e51afc63b7
gnu: r-genomicranges: Update to 1.32.3.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
2018-06-02 13:39:08 +02:00
c2401d06c5
gnu: r-xvector: Update to 0.20.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
2018-06-02 13:39:08 +02:00
0a465e5694
gnu: r-limma: Update to 3.36.1.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
2018-06-02 13:39:08 +02:00
d358a5a0c1
gnu: r-variantannotation: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
2018-06-02 13:39:08 +02:00
4639025284
gnu: r-edger: Update to 3.22.2.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
2018-06-02 13:39:08 +02:00
953c8b18f8
gnu: r-genomeinfodb: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
2018-06-02 13:39:08 +02:00
8b44c28f5d
gnu: r-iranges: Update to 2.14.10.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
2018-06-02 13:39:08 +02:00
33cd15fa84
gnu: r-s4vectors: Update to 0.18.2.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
2018-06-02 13:39:08 +02:00
607acf3194
gnu: r-dnacopy: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
2018-06-02 13:39:07 +02:00
3679a2fec4
gnu: r-bioccheck: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
2018-06-02 13:39:07 +02:00
dc6c168ac1
gnu: r-biocstyle: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
2018-06-02 13:39:07 +02:00
e5f52b692a
gnu: r-biocviews: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
2018-06-02 13:39:07 +02:00
97af51ef40
gnu: r-biocinstaller: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
2018-06-02 13:39:07 +02:00
e5907a44e1
gnu: r-biocgenerics: Update to 0.26.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
2018-06-02 13:39:07 +02:00
9370b8ee9f
gnu: r-grohmm: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
712fe39680
gnu: r-systempiper: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
eabe78faca
gnu: r-shortread: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
2018-06-02 13:39:07 +02:00
9da8e275ca
gnu: r-gostats: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
d8410d6610
gnu: r-category: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
f1094f50a7
gnu: r-gseabase: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
2018-06-02 13:39:07 +02:00
9177ac2295
gnu: r-rbgl: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
2018-06-02 13:39:07 +02:00
5516db9e70
gnu: r-annotationforge: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
2018-06-02 13:39:07 +02:00
16da69b5e6
gnu: r-dexseq: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
2018-06-02 13:39:07 +02:00
51c1f96ebc
gnu: r-deseq2: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
2018-06-02 13:39:07 +02:00
41657b15f4
gnu: r-genefilter: Update to 1.62.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
2018-06-02 13:39:06 +02:00
4d70c8c486
gnu: r-geneplotter: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
14e9235f0c
gnu: r-copynumber: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
02be818044
gnu: r-annotate: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
81b0181b6f
gnu: r-qdnaseq: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:06 +02:00
5c0df206cf
gnu: r-cghcall: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
2018-06-02 13:39:06 +02:00
205df4a4cb
gnu: r-cghbase: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
2018-06-02 13:39:06 +02:00
6748708883
gnu: r-marray: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0.
[propagated-inputs]: Remove r-biobase.
2018-06-02 13:39:06 +02:00
f794e85daa
gnu: r-chippeakanno: Update to 3.14.0.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0.
[propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges,
r-iranges, and r-s4vectors.
2018-06-02 13:39:06 +02:00
43734b4727
gnu: r-ripseeker: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
45bbccf4e7
gnu: r-diffbind: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
2018-06-02 13:39:06 +02:00
72427c721d
gnu: r-regioner: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
2018-06-02 13:39:06 +02:00
2f5b3d8e90
gnu: r-hpar: Update to 1.22.2.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
2018-06-02 13:39:06 +02:00
d22546cf80
gnu: r-minimal: Update to 3.5.0.
...
* gnu/packages/statistics.scm (r-with-tests): New variable derived from
r-minimal; update to 3.5.0.
[arguments]: Build recommended packages.
(r-minimal): Inherit from r-with-tests.
[arguments]: Disable recommended packages and tests.
2018-06-02 13:39:06 +02:00
d5452aa201
gnu: emacs-elfeed: Update to 3.0.0.
...
* gnu/packages/emacs.scm (emacs-elfeed): Update to 3.0.0.
2018-06-02 13:05:08 +02:00
a13c1bf4ca
Merge branch 'master' into core-updates
2018-06-01 23:41:40 +02:00
1a3e3162ac
gnu: icecat: Add more fixes from upstream esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-06-01 12:51:43 -04:00
65a9f6b6cf
gnu: qtbase: Fix build on older kernels.
...
* gnu/packages/qt.scm (qtbase)[arguments]: Add configure flags
"-no-feature-getentropy" and "-no-feature-renameat2".
2018-06-01 17:33:25 +02:00
9f160a0d3c
vm: Use 'with-extensions'.
...
* gnu/system/vm.scm (system-docker-image)[build]: Use
'with-extensions'. Remove 'add-to-load-path' calls.
2018-06-01 15:21:28 +02:00
33d8a87104
bootloader: grub: Use 'with-extensions'.
...
* gnu/bootloader/grub.scm (svg->png): Use 'with-extensions'. Remove
'add-to-load-path' calls.
* gnu/build/svg.scm: Use (rsvg) and (cairo) the normal way. Remove
'module-autoload!' calls.
2018-06-01 15:21:28 +02:00
31a5d694a3
bootloader: grub: Simplify 'svg->png'.
...
* gnu/bootloader/grub.scm (svg->png): Remove now unneeded
#:guile-for-build argument.
2018-06-01 15:21:28 +02:00
ff913cf514
tests: ssh: Use 'with-extensions'.
...
* gnu/tests/ssh.scm (run-ssh-test)[test]: Wrap body in
'with-extensions'. Remove %load-path manipulation code.
2018-06-01 15:21:28 +02:00
514026d7de
gnu: rust: Add support for building 32-bit packages on 64-bit hosts.
...
* gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use
nix-system->gnu-triplet to determine the system type.
(rust-1.19): Use readelf instead of nm in the atomic-lock-free test.
(rust-1.23): Disable the cargo_test_env test. Disable parallel execution of
tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
a078a6ec3b
gnu: Add git-annex.
...
* gnu/packages/version-control.scm (git-annex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
4e5d9bf20e
gnu: Add ghc-disk-free-space.
...
* gnu/packages/haskell.scm (ghc-disk-free-space): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
1ea3971992
gnu: ghc-psqueues: Allow building with newer versions of QuickCheck.
...
* gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure
flag to allow newer versions of QuickCheck.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
6950a45073
gnu: Add ghc-safesemaphore.
...
* gnu/packages/haskell.scm (ghc-safesemaphore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
92c2097bc2
gnu: Add ghc-esqueleto.
...
* gnu/packages/haskell.scm (ghc-esqueleto): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
a39e6faee9
gnu: Add ghc-ifelse.
...
* gnu/packages/haskell.scm (ghc-ifelse): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
e3aae496f9
gnu: Add ghc-feed.
...
* gnu/packages/haskell.scm (ghc-feed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
4c798726b4
gnu: Add ghc-bloomfilter.
...
* gnu/package/haskell.scm (ghc-bloomfilter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
93b83eb31e
services: Add hpcguix-web.
...
* gnu/service/web.scm (<hpcguix-web-configuration>): New record-type.
(%hpcguix-web-accounts): New variable.
(%hpcguix-web-activation,hpcguix-web-shepherd-service,
hpcguix-web-service-type): New procedures.
* gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure.
(%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable.
* doc/guix.texi (Web Services): Add 'hpcguix-web'.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
d6a4dfec90
gnu: Add hpcguix-web.
...
* gnu/package/web.scm (hpcguix-web): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-06-01 13:50:26 +02:00
7a4e2eaab3
marionette: Add 'wait-for-tcp-port'.
...
* gnu/build/marionette.scm (wait-for-tcp-port): New procedure.
* gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead
of the inline loop.
2018-06-01 13:50:26 +02:00
5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26.
...
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase. In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable. Remove substitution for
'w3m-image-viewer', which no longer exists.
2018-06-01 13:50:26 +02:00
8674abb1dd
gnu: sddm: Fix CMake build.
...
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.
Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-06-01 12:17:00 +02:00
e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].
...
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
2018-05-31 20:31:46 -04:00
555ab0853b
gnu: Add emacs-zotxt.
...
* gnu/packages/emacs.scm (emacs-zotxt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:09 +02:00
45dca193a4
gnu: Add emacs-org-caldav.
...
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
ec8a9892d1
gnu: Add python-bigfloat.
...
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
73d854232f
gnu: bear: Fix python path.
...
* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
b1059b38b2
system: 'read-boot-parameters' provides a more meaningful warning.
...
'system' here was bound to Guile's 'system' procedure.
* gnu/system.scm (read-boot-parameters): Fix argument for fallback
warning.
2018-05-31 18:13:08 +02:00
69a05eab35
file-systems: Always wait for devices to show up.
...
Previously, 'canonicalize-device-spec' would wait for devices when they
were specified as a label or UUID, but would not wait when the user
passed a "/dev" file name directly. This could cause problems when
the /dev node takes a while to show up.
* gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve'
call in the 'string?' case.
2018-05-31 18:13:08 +02:00
59f87b44da
Merge branch 'master' into core-updates
2018-05-31 13:23:49 +02:00
404e5c7d7d
gnu: r-servr: Update to 0.10.
...
* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
2018-05-31 13:21:31 +02:00
ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31 13:21:31 +02:00
508dd24abe
gnu: r-shiny: Update to 1.1.0.
...
* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
2018-05-31 13:21:31 +02:00
eb0d599a67
gnu: r-rjson: Update to 0.2.19.
...
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
2018-05-31 13:21:31 +02:00
71644c0ee8
gnu: r-htmltable: Update to 1.12.
...
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
2018-05-31 13:21:31 +02:00
beb0878fe5
gnu: r-directlabels: Update to 2018.05.22.
...
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
2018-05-31 13:21:31 +02:00
089e037638
gnu: r-ranger: Update to 0.10.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
2018-05-31 13:21:31 +02:00
14bb6f5f83
gnu: r-tclust: Update to 1.4-1.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
2018-05-31 13:21:31 +02:00
9fad62743c
gnu: r-caret: Update to 6.0-80.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
2018-05-31 13:21:31 +02:00
9bcc68fbf6
gnu: r-quantreg: Update to 5.36.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
2018-05-31 13:21:31 +02:00
13dc492435
gnu: r-rrcov: Update to 1.4-4.
...
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
2018-05-31 13:21:31 +02:00
6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
2018-05-31 13:21:31 +02:00
366dd8d7cb
gnu: r-runit: Update to 0.4.32.
...
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
2018-05-31 13:21:31 +02:00
edb29f2986
gnu: r-purrr: Update to 0.2.5.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
2018-05-31 13:21:31 +02:00
e94d827440
gnu: r-tidyr: Update to 0.8.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
2018-05-31 13:21:31 +02:00
1957c20e0c
gnu: r-synchronicity: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
2018-05-31 13:21:31 +02:00
7da0790e2a
gnu: r-rngtools: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
2018-05-31 13:21:31 +02:00
3a6051659d
gnu: r-pkgmaker: Update to 0.27.
...
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
2018-05-31 13:21:31 +02:00
b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
a52bb97a79
gnu: r-plotrix: Update to 3.7-2.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
2018-05-31 13:21:31 +02:00
1ce6be5ee2
gnu: r-data-table: Update to 1.11.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
2018-05-31 13:21:31 +02:00
2d7758c1d6
gnu: r-rlang: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
2018-05-31 13:21:31 +02:00
624283a107
gnu: r-knitrbootstrap: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
2018-05-31 13:21:31 +02:00
22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10.
...
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
2018-05-31 13:21:31 +02:00
99b225f3eb
gnu: r-bit: Update to 1.1-14.
...
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
2018-05-31 13:21:31 +02:00
3c441be0f3
gnu: r-kernlab: Update to 0.9-26.
...
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31 13:21:31 +02:00
ad016826c9
gnu: r-rmysql: Update to 0.10.15.
...
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
aea3be250c
gnu: r-mice: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31 13:21:31 +02:00
6034a62a1b
gnu: r-callr: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
2018-05-31 13:21:31 +02:00
a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
2018-05-31 13:21:31 +02:00
e86d3cc501
gnu: r-shinyace: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
2018-05-31 13:21:31 +02:00
a80606308a
gnu: r-processx: Update to 3.1.0.
...
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31 13:21:31 +02:00
9944399ae3
gnu: r-ggally: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
2018-05-31 13:21:31 +02:00
13079c143b
gnu: r-psych: Update to 1.8.4.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31 13:21:31 +02:00
aadb9ee6df
gnu: r-pillar: Update to 1.2.3.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
65ea783f6c
gnu: r-utf8: Update to 1.1.4.
...
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
2018-05-31 13:21:31 +02:00
c36745cf95
gnu: r-ggjoy: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
2018-05-31 13:21:31 +02:00
cda93e8399
gnu: r-dtw: Update to 1.20-1.
...
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
2018-05-31 13:21:31 +02:00
fabf09934b
gnu: r-ica: Update to 1.0-2.
...
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
2018-05-31 13:21:31 +02:00
1e31e8bc74
gnu: r-sm: Update to 2.2-5.5.
...
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
2018-05-31 13:21:31 +02:00
da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1.
...
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
2018-05-31 13:21:31 +02:00
0759d87dfc
gnu: r-ggrepel: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
2018-05-31 13:21:31 +02:00
b13b56743b
gnu: r-cvst: Update to 0.2-2.
...
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
2018-05-31 13:21:31 +02:00
975ea10d6f
gnu: r-energy: Update to 1.7-4.
...
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
2018-05-31 13:21:31 +02:00
90f1ecb939
gnu: r-emdbook: Update to 1.3.10.
...
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
2018-05-31 13:21:31 +02:00
0acbf8bbb7
gnu: r-inline: Update to 0.3.15.
...
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
2018-05-31 13:21:31 +02:00
207c497e14
gnu: r-ff: Update to 2.2-14.
...
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
2018-05-31 13:21:31 +02:00
c81497b141
gnu: r-rcpp: Update to 0.12.17.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
2018-05-31 13:21:31 +02:00
5479e3e639
gnu: r-abbyyr: Update to 0.5.4.
...
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
2018-05-31 13:21:31 +02:00
11de8673d1
gnu: Add r-bibtex.
...
* gnu/packages/cran.scm (r-bibtex): New variable.
2018-05-31 13:21:31 +02:00
9f56ceecf3
gnu: Add r-reticulate.
...
* gnu/packages/cran.scm (r-reticulate): New variable.
2018-05-31 13:21:31 +02:00
d182828f53
gnu: Add r-zip.
...
* gnu/packages/cran.scm (r-zip): New variable.
2018-05-31 13:21:31 +02:00
84e7147ae3
gnu: Add r-mitml.
...
* gnu/packages/cran.scm (r-mitml): New variable.
2018-05-31 13:21:31 +02:00
03e718fbb1
gnu: Add r-pan.
...
* gnu/packages/cran.scm (r-pan): New variable.
2018-05-31 13:21:31 +02:00
fe1495e35c
gnu: Add r-jomo.
...
* gnu/packages/cran.scm (r-jomo): New variable.
2018-05-31 13:21:31 +02:00
3ca317359c
gnu: r-vegan: Update to 2.5-2.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
2018-05-31 13:21:31 +02:00
966e9575a3
gnu: linux-libre@4.14: Update to 4.14.47.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.47.
(%linux-libre-4.14-hash): Update hash.
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.14): Remove patch.
2018-05-31 04:17:22 -04:00
55b68174aa
gnu: linux-libre@4.9: Update to 4.9.105.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.105.
Remove patch.
2018-05-31 04:16:05 -04:00
2aab213e36
gnu: linux-libre@4.4: Update to 4.4.135.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.135.
Remove patch.
2018-05-31 04:14:57 -04:00
1e341fa508
gnu: powertabeditor: Fix build with Qt 5.11.
...
Fixes <https://bugs.gnu.org/31659 >.
* gnu/packages/music.scm (powertabeditor)[arguments]: Add build phase
"add-missing-headers".
2018-05-31 08:30:45 +02:00
d2dde99e99
gnu: mariadb: Update to 10.1.33.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-31 08:45:58 +03:00
0d6f84aab1
Merge branch 'master' into core-updates
2018-05-31 00:27:03 -04:00
88a3465e4a
gnu: linux-libre: Revert bad upstream patch in 4.14/4.9/4.4 kernels.
...
Apply the 1-line revert from upstream that was the sole fix in 4.14.47,
4.9.105, and 4.4.135. Here we cherry-pick the patch until the corresponding
linux-libre versions are released.
* gnu/packages/linux.scm (linux-libre-4.14, linux-libre-4.9)
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.4): Add the patch.
2018-05-31 00:23:41 -04:00
706d6190ca
gnu: 0ad: Update to 0.0.23-alpha.
...
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23-alpha.
[source]: Use HTTPS URL.
[inputs]: Add libsodium.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-31 00:21:47 -04:00
e9ae846667
gnu: knot: Update to 2.6.7.
...
* gnu/packages/dns.scm (knot): Update to 2.6.7.
2018-05-31 04:54:58 +02:00
51c4fb007a
gnu: duperemove: Update to 0.11.
...
* gnu/packages/disk.scm (duperemove): Update to 0.11.
2018-05-31 04:54:58 +02:00
42d93a32ee
gnu: sakura: Update to 3.6.0.
...
* gnu/packages/terminals.scm (sakura): Update to 3.6.0.
2018-05-31 04:54:58 +02:00
4ef1d9fd8b
gnu: stunnel: Update to 5.46.
...
* gnu/packages/web.scm (stunnel): Update to 5.46.
2018-05-31 04:54:57 +02:00
6c4d1413f2
gnu: mkvtoolnix: Use INVOKE.
...
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
8d5960d1b1
gnu: liba52: Use INVOKE.
...
* gnu/packages/video.scm (liba52)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
3103101ec9
gnu: aalib: Use INVOKE.
...
* gnu/packages/video.scm (aalib)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
d840f6b98a
gnu: xapian: Use INVOKE.
...
* gnu/packages/search.scm (xapian)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
6c738fe9e7
gnu: khal: Use INVOKE.
...
* gnu/packages/calendar.scm (khal)[arguments]: Substitute INVOKE for
SYSTEM* and explicitly return #t from phases where needed.
2018-05-31 04:54:56 +02:00
4133914416
gnu: rss-bridge: Use INVOKE.
...
* gnu/packages/web.scm (rss-bridge)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
a145d7e9af
gnu: python-clf: Use INVOKE.
...
* gnu/packages/web.scm (python-clf)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
b8150fa091
gnu: python-internetarchive: Use INVOKE.
...
* gnu/packages/web.scm (python-internetarchive)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-05-31 04:54:54 +02:00
16b5dafc4d
gnu: httptunnel: Use INVOKE.
...
* gnu/packages/web.scm (httptunnel)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:54 +02:00
2cdc719193
gnu: surfraw: Use INVOKE.
...
* gnu/packages/web.scm (surfraw)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
9cd760f13f
gnu: gumbo-parser: Use INVOKE.
...
* gnu/packages/web.scm (gumbo-parser)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
7f4e5f19fa
gnu: sassc: Use INVOKE.
...
* gnu/packages/web.scm (sassc)[arguments]: Substitute INVOKE for SYSTEM*
and its plumbing.
2018-05-31 04:54:53 +02:00
b5d587055b
gnu: tidy: Use INVOKE.
...
* gnu/packages/web.scm (tidy)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31 04:54:52 +02:00
946e5e8aa1
gnu: tipp10: Use INVOKE.
...
* gnu/packages/education.scm (tipp10)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:52 +02:00
aa0771556e
gnu: krona-tools: Use INVOKE.
...
* gnu/packages/web.scm (krona-tools)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
359375e649
gnu: fcgiwrap: Use INVOKE.
...
* gnu/packages/web.scm (fcgiwrap)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
e80c05ac3e
gnu: ffmpeg: Use INVOKE.
...
* gnu/packages/video.scm (ffmpeg)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:50 +02:00
512f22f9e8
gnu: r-dplyr: Update to 0.7.5.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.5.
[propagated-inputs]: Add r-tidyselect.
2018-05-31 04:54:50 +02:00
fc55fe2ef7
gnu: s6-rc: Update to 0.4.0.1.
...
* gnu/packages/skarnet.scm (s6-rc): Update to 0.4.0.1.
2018-05-31 04:54:50 +02:00
1608969b03
gnu: skalibs: Update to 2.6.4.0.
...
* gnu/packages/skarnet.scm (skalibs): Update to 2.6.4.0.
2018-05-31 04:54:49 +02:00
2c65c085f9
gnu: lchat: Mark up description.
...
* gnu/packages/suckless.scm (lchat)[description]: Use @code.
2018-05-31 04:54:48 +02:00
82f22fac9f
gnu: lchat: Update to 0.0.0-3.f951919.
...
* gnu/packages/suckless.scm (lchat): Update to 0.0.0-3.f951919.
[arguments]: Run tests. Install man page.
2018-05-31 04:54:48 +02:00
aa945bf637
gnu: human: Update to 0.3.
...
* gnu/packages/suckless.scm (human): Update to 0.3.
[source]: Use version as the tag, and GIT-FILE-NAME.
2018-05-31 04:54:48 +02:00
8f7c6a5ff7
gnu: sent: Update to 1.
...
* gnu/packages/suckless.scm (sent): Update to 1.
[source]: Switch to URL-FETCH/TARBALL.
2018-05-31 04:54:47 +02:00
fc1a7b58d7
gnu: st: Update to 0.8.1.
...
* gnu/packages/suckless.scm (st): Update to 0.8.1.
[arguments]: Relax ‘inhibit-terminfo-install’ regular expression.
2018-05-31 04:54:47 +02:00
504d16dd04
gnu: spoon: Update to 0.6.
...
* gnu/packages/suckless.scm (spoon): Update to 0.6.
2018-05-31 04:54:46 +02:00
a66fb3a14e
gnu: isync: Add zlib compression support.
...
This adds ~400 KiB (.5%) to isync's now-73.1 MiB closure.
* gnu/packages/mail.scm (isync)[inputs]: Add ZLIB.
2018-05-30 23:46:53 +02:00
03d9031962
gnu: mariadb: Update to 10.1.33.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-30 22:46:31 +03:00
370e87fdbb
gnu: linux-libre: Update to 4.16.13.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.13.
(%linux-libre-hash): Update hash.
2018-05-30 14:59:47 -04:00
49e67982eb
gnu: linux-libre@4.14: Update to 4.14.46.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.46.
(%linux-libre-4.14-hash): Update hash.
2018-05-30 14:58:49 -04:00
f9e1c2d72a
gnu: linux-libre@4.9: Update to 4.9.104.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.104.
2018-05-30 14:58:09 -04:00
13fcbf3cce
gnu: linux-libre@4.4: Update to 4.4.134.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.134.
2018-05-30 14:57:22 -04:00
6f8f98df7f
gnu: scribus: Fix build against Qt 5.11.
...
* gnu/packages/scribus.scm (scribus)[arguments]: Add a 'patch-source' phase
that includes missing headers.
2018-05-30 20:45:17 +02:00
9ab0627eee
gnu: glibc-locales: Adjust patch that no longer applied.
...
* gnu/packages/patches/glibc-locales.patch: Adjust for glibc 2.27.
2018-05-30 15:21:27 +02:00
80c0f69c50
gnu: emms: Fix build.
...
* gnu/packages/emacs.scm (emms)[arguments]: Reset time stamps of files to be
gzipped; let post-install phase return #t.
2018-05-30 14:54:53 +02:00
bc73f673e8
gnu: icedtea-7: Build with gcc-4.9.
...
* gnu/packages/java.scm (icedtea-7)[native-inputs]: Add gcc-4.9.
2018-05-30 12:29:14 +02:00
bcb078a4dc
gnu: icedtea-6: Build with gcc-4.9.
...
* gnu/packages/java.scm (icedtea-6)[native-inputs]: Add gcc-4.9 and libnsl.
2018-05-30 11:06:21 +02:00
d0e23e3940
gnu: vlc: Update to 3.0.3, and add more inputs.
...
Co-authored-by: Roel Janssen <roel@gnu.org>
* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg. Replace lua-5.1 with
lua-5.2. Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags. In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt". Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'. Add new
'wrap-executable' phase.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2018-05-30 11:02:57 +02:00
cfcd9a4551
gnu: wireshark: End phase with #t.
...
* gnu/packages/networking.scm (wireshark)[arguments]: End 'patch-source' phase
with #t.
2018-05-30 11:02:52 +02:00
3fe0d36027
gnu: perl-text-format: Update to 0.61.
...
* gnu/packages/perl.scm (perl-text-format): Update to 0.61.
2018-05-30 10:06:57 +02:00
2847d833be
gnu: python-oslo.utils: Update to 3.36.2.
...
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.2.
2018-05-30 10:06:57 +02:00
14e2f61ada
gnu: gtkglext: Fix build.
...
* gnu/packages/gnome.scm (gtkglext)[arguments]: Add build phase to fix name
collision.
2018-05-30 08:57:33 +02:00
341a36b32c
Merge branch 'master' into core-updates
2018-05-30 02:21:29 -04:00
a21bcd7079
Revert "gnu: swig: Patch for Octave 4.4."
...
This reverts commit 3771000f89
2018-05-30 02:18:26 -04:00
bfc25e015d
gnu: xpra: Update to 2.3.1.
...
* gnu/packages/xorg.scm (xpra): Update to 2.3.1.
[inputs]: Add libxi.
2018-05-30 08:14:23 +02:00
b3e23b0216
gnu: ibus-libpinyin: Update to 1.10.0.
...
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.10.0.
[arguments]: Remove "autogen" phase.
[native-inputs]: Remove autoconf, automake, and libtool.
2018-05-30 07:42:20 +02:00
8738c2b342
gnu: libpinyin: Update to 2.2.0.
...
* gnu/packages/ibus.scm (libpinyin): Update to 2.2.0.
[arguments]: Remove.
[inputs]: Remove model.
[native-inputs]: Remove autoconf, automake, and libtool.
2018-05-30 07:42:19 +02:00
7627705293
gnu: vlc: Update to 3.0.3, and add more inputs.
...
Co-authored-by: Roel Janssen <roel@gnu.org>
* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg. Replace lua-5.1 with
lua-5.2. Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags. In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt". Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'. Add new
'wrap-executable' phase.
2018-05-30 00:17:35 -04:00
7cb8d092d5
gnu: linux-libre@4.1: Update to 4.1.52.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.52.
2018-05-29 23:16:14 -04:00
c0d7c1244a
Merge branch 'master' into core-updates
2018-05-29 21:20:47 -04:00
f274f0774d
gnu: tiled: Update to 1.1.5.
...
* gnu/packages/game-development.scm (tiled): Update to 1.1.5.
2018-05-29 21:20:27 -04:00
9cf879a573
gnu: Add go-github-com-gorilla-context.
...
* gnu/packages/golang.scm (go-github-com-gorilla-context): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
daed2c5e6a
gnu: Add go-github-com-google-gofuzz.
...
* gnu/packages/golang.scm (go-github-com-google-gofuzz): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
73fe19ef28
gnu: Add go-github-com-google-cadvisor.
...
* gnu/packages/golang.scm (go-github-com-google-cadvisor): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
7979f7df9a
gnu: Add go-github-com-emicklei-go-restful.
...
* gnu/packages/golang.scm (go-github-com-emicklei-go-restful): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
67836c5956
gnu: Add go-github-com-blang-semver.
...
* gnu/packages/golang.scm (go-github-com-blang-semver): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
7c2ebbd4a6
gnu: Add go-github-com-urfave-cli.
...
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:05 -04:00
5a14e81e41
gnu: Update shogun to 6.1.3.
...
* gnu/packages/machine-learning.scm (shogun): Update to 6.1.3.
[source]: Update snippet to remove proprietary software.
[arguments]: Rewrite list of symlinks in 'delete-broken-symlinks' phase.
Rewrite file lists given to substitute* in 'change-R-target-path' and
'fix-octave-modules' phases. Adjust 'fix-octave-modules' for the update.
Add 'move-rxcpp' phase. Rewrite configure-flags for the update.
[inputs]: Add eigen.
[native-inputs]: Add rxcpp.
2018-05-29 18:20:38 -04:00
3771000f89
gnu: swig: Patch for Octave 4.4.
...
* gnu/packages/swig.scm (swig)[source]: Add patch.
* gnu/packages/patches/swig-octave-patches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-05-29 18:20:38 -04:00
44884a9df8
gnu: eigen: Include unsupported features.
...
* gnu/packages/algebra.scm (eigen)[source]: Do not build the tests for
unsupported features, but include the files.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-05-29 18:20:38 -04:00
3a354e104a
gnu: Add rxcpp.
...
* gnu/packages/machine-learning.scm (rxcpp): New variable.
2018-05-29 18:20:37 -04:00
de658cc2f8
gnu: octave: Update to 4.4.0.
...
* gnu/packages/maths.scm (octave): Update to 4.4.0.
2018-05-29 18:20:37 -04:00
f0dd127d0a
gnu: mpd: Update to 0.20.20.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.20.
2018-05-29 18:00:34 -04:00
e5bbfc7df0
gnu: mypaint-brushes: Fetch source from git.
...
* gnu/packages/gimp.scm (mypaint-brushes)[source]: Fetch source from git.
2018-05-29 23:24:32 +02:00
5686be393b
gnu: mypaint-brushes: Fix build.
...
* gnu/packages/gimp.scm (mypaint-brushes)[arguments]: Remove bootstrap phase;
add "relax-dependency-version" phase.
2018-05-29 23:24:32 +02:00
d2e1da18b0
gnu: python-pygobject: Delete broken tests.
...
* gnu/packages/glib.scm (python-pygobject)[arguments]: Add phase
"delete-broken-tests".
2018-05-29 23:24:32 +02:00
1b043aeb85
gnu: python2-pygobject: Add native-inputs.
...
* gnu/packages/glib.scm (python2-pygobject)[native-inputs]: New field.
2018-05-29 23:17:48 +02:00
59f6dfe552
gnu: python-pygobject: Update to 3.28.2.
...
* gnu/packages/glib.scm (python-pygobject): Update to 3.28.2.
[native-inputs]: Add python-pytest.
2018-05-29 22:43:00 +02:00
660c9b4788
gnu: modem-manager: Fix build.
...
* gnu/packages/freedesktop.scm (modem-manager)[arguments]: Add configure flag
to avoid aborting on certain warnings.
2018-05-29 22:11:04 +02:00
b50196c3a4
gnu: Git: Update to 2.17.1 [fixes CVE 2018-{11234,11235}].
...
* gnu/packages/version-control.scm (git): Update to 2.17.1.
2018-05-29 16:00:02 -04:00
0eeade9b53
gnu: pan: Update to 0.145.
...
* gnu/packages/mail.scm (pan): Update to 0.145.
2018-05-29 20:43:38 +02:00
3b68a9b66e
gnu: disorderfs: Update to 0.5.3.
...
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.3.
[source]: Update upstream URI and re-use VERSION.
2018-05-29 20:43:37 +02:00
e5ab03b51d
gnu: thefuck: Update to 3.27.
...
* gnu/packages/admin.scm (thefuck): Update to 3.27.
2018-05-29 20:43:37 +02:00
e3d779cc93
gnu: Wireshark: Update to 2.6.1.
...
* gnu/packages/networking.scm (wireshark): Update to 2.6.1.
2018-05-29 14:39:22 -04:00
4d0f463d6b
gnu: xdg-utils: Update to 1.1.3 [fixes CVE-2017-18266].
...
* gnu/packages/freedesktop.scm (xdg-utils): Update to 1.1.3.
2018-05-29 14:39:22 -04:00
201f2c8769
vm: Remove unneeded dependency on Guile-JSON.
...
Fixes <https://bugs.gnu.org/31581 >.
Reported by Leo Famulari <leo@famulari.name>.
* gnu/system/vm.scm: Remove unneeded (guix docker) import.
2018-05-29 18:29:36 +02:00
7c1445f86a
gnu: Add missing copyright line.
...
* gnu/packages/engineering.scm: Add missing copyright line for commit 6cedd61
2018-05-29 15:43:13 +02:00
b347317ae6
Merge branch 'master' into core-updates
2018-05-29 15:41:06 +02:00
6cedd61177
gnu: librecad: Fix build against Qt 5.11.
...
* gnu/packages/engineering.scm (librecad)[arguments]: Add missing headers.
2018-05-29 15:25:23 +02:00
0d56d9c714
services: fstab: Properly handle file system labels.
...
Fixes a regression introduced in
a5acc17a3c
2018-05-29 15:09:44 +02:00
80e99aa467
gnu: emacs-s: Fix tests.
...
* gnu/packages/emacs.scm (emacs-s)[arguments]: Use full emacs package to fix
tests.
2018-05-29 14:05:11 +02:00
06f863791a
gnu: emacs-dash: Update to 2.14.1.
...
* gnu/packages/emacs.scm (emacs-dash): Update to 2.14.1.
[source]: Fetch from git.
2018-05-29 14:05:11 +02:00
bd6a699d73
gnu: emacs-minimal: Fix build by disabling gnutls support.
...
This is a follow-up to bb82c3d42b
2018-05-29 14:05:11 +02:00
2206c7ad93
gnu: emacs: Update to 26.1.
...
* gnu/packages/emacs.scm (emacs): Update to 26.1,
[arguments]: disable tests as they do not exist in release.
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: Update patch
indentation and line numbers.
2018-05-29 14:05:11 +02:00
6fe1657705
system: Add u-boot-puma-rk3399.
...
* gnu/packages/bootloaders.scm (u-boot-puma-rk3399): New variable.
(make-u-boot-package)[arguments]: Add '.rksd' files to the files installed
during custom 'install phase.
* gnu/bootloader/u-boot.scm (u-boot-puma-rk3399-bootloader):
New exported variable.
* gnu/system/install.scm (rk3399-puma-installation-os):
New exported variable.
* gnu/packages/firmware.scm (arm-trusted-firmware-puma-rk3399): New variable.
(rk3399-cortex-m0): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-05-29 10:46:13 +02:00
2a49aee4d1
gnu: khal: Update to 0.9.9.
...
* gnu/packages/calendar.scm (khal): Update to 0.9.9.
2018-05-29 00:41:32 -04:00
82b695b834
Merge branch 'master' into core-updates
2018-05-28 20:45:37 -04:00
ee3c8fbee2
gnu: make-u-boot-package: Sort printed configurations case-insensitively.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Sort printed
configurations case-insensitively.
2018-05-29 00:37:10 +02:00
65212c42cd
gnu: u-boot-tools: Enable tests.
...
* gnu/packages/bootloaders.scm (u-boot-tools)[native-inputs]: Add openssl,
python2-coverage, python2-pytest, sdl.
[arguments]<#:make-flags>: Remove NO_SDL.
[arguments]<#:test-target>: Change to "tests".
[arguments]<#:phases>[patch]: New phase.
[arguments]<#:phases>[check]: Replace and move.
2018-05-28 23:52:07 +02:00
a234ae38ba
gnu: wireshark: Fix build against Qt 5.11.
...
* gnu/packages/networking.scm (wireshark)[arguments]: Add a 'patch-source'
phase that includes missing headers.
2018-05-28 23:45:50 +02:00
77cc8778a3
gnu: supercollider: Remove broken Qt dependency.
...
As suggested by Ricardo Wurmus.
This also removes IDE support.
* gnu/packages/audio.scm (supercollider)[arguments]: Add "-DSC_QT=off" to
configure flags.
[native-inputs]: Remove QTTOOLS.
[inputs]: Remove QTBASE, QTWEBKIT, QTSENSORS, QTDECLARATIVE and QTLOCATION.
2018-05-28 22:49:55 +02:00
c7d901c130
gnu: vlc: Fix build against Qt 5.11.
...
* gnu/packages/video.scm (vlc)[arguments]: Add missing headers.
2018-05-28 22:40:53 +02:00
a338b6f51d
Revert "gnu: emacs: Update to 26.1."
...
This reverts commit bb82c3d42b
2018-05-28 19:10:17 +02:00
bb82c3d42b
gnu: emacs: Update to 26.1.
...
* gnu/packages/emacs.scm (emacs): Update to 26.1,
[arguments]: disable tests as they do not exist in release.
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: Update patch
indentation and line numbers.
2018-05-28 18:40:21 +02:00
3ec07ced8a
gnu: Add singularity.
...
* gnu/packages/linux.scm (singularity): New variable.
2018-05-28 17:36:09 +02:00
e580597d25
gnu: Add squashfs-tools-next.
...
* gnu/packages/compression.scm (squashfs-tools-next): New variable.
2018-05-28 17:36:08 +02:00
fdb85546dd
gnu: gajim: Update to 1.0.3.
...
* gnu/packages/messaging.scm (gajim): Update to 1.0.3.
2018-05-28 16:44:05 +02:00
135745939d
gnu: python-nbxmpp: Update to 0.6.6.
...
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.6.
2018-05-28 16:43:55 +02:00
fe365a3d0e
gnu: libssh2: Fix build on MIPS systems.
...
* gnu/packages/ssh.scm (libssh2)[arguments]: When building for MIPS, replace
the existing bootstrap phase instead of adding a new 'autoreconf' phase (in
the wrong place).
2018-05-28 09:06:13 -04:00
073cc31313
gnu: Fix typo.
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Fix a typo introduced in commit 2101cc3fb6
2018-05-28 09:04:44 -04:00
70770b9381
gnu: Add xtensor.
...
* gnu/packages/algebra.scm (xtensor): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:20:50 +02:00
6f3c850618
gnu: Add xtl.
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* gnu/packages/cpp.scm (xtl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:19:29 +02:00
e3c0676adf
gnu: Add json-modern-cxx.
...
* gnu/packages/cpp.scm (json-modern-cxx): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:18:51 +02:00
385357c0d7
gnu: Add fifo-map.
...
* gnu/packages/cpp.scm (fifo-map): New variable.
* gnu/packages/patches/fifo-map-fix-flags-for-gcc.patch: New file.
* gnu/packages/patches/fifo-map-remove-catch.hpp.patch: New file.
* gnu/local.mk: Add new patch files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:48:52 +02:00
ad8a4d6dc8
gnu: Add amalgamate.
...
This commit also re-orders some module statements.
* gnu/packages/code.scm (amalgamate): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:45:39 +02:00
56e72c0084
gnu: Add catch-framework2.
...
* gnu/packages/check.scm (catch-framework2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:39:57 +02:00
9ceeca0880
system: Remove uses of the 'title' field of <file-system>.
...
* gnu/system/install.scm (installation-os): Remove uses of the 'title'
field of 'file-system'; use 'file-system-label' as appropriate.
* gnu/system/vm.scm (system-disk-image, system-qemu-image): Likewise.
* gnu/tests.scm (%simple-os): Likewise.
* gnu/tests/install.scm (%minimal-os, %minimal-extlinux-os)
(%minimal-os-on-vda, %separate-home-os, %separate-store-os)
(%raid-root-os, %encrypted-root-os, %btrfs-root-os): Likewise.
* gnu/build/shepherd.scm (default-mounts)[tmpfs]: Likewise.
* tests/guix-system.sh: Likewise.
* tests/system.scm (%root-fs): Likewise.
("operating-system-boot-mapped-devices, implicit dependency"): Likewise.
2018-05-28 13:24:19 +02:00
a5acc17a3c
file-systems: Remove 'title' field and add <file-system-label>.
...
The 'title' field was easily overlooked and was an endless source of
confusion. Now, the value of the 'device' field is self-contained.
* gnu/system/file-systems.scm (<file-system>): Change constructor name
to '%file-system'.
[title]: Remove.
(<file-system-label>): New record type with printer.
(report-deprecation, device-expression)
(process-file-system-declaration, file-system): New macros.
(file-system-title): New procedure.
(file-system->spec, spec->file-system): Adjust to handle
<file-system-label>.
* gnu/system.scm (bootable-kernel-arguments): Add case for
'file-system-label?'.
(read-boot-parameters): Likewise.
(mapped-device-user): Avoid 'file-system-title'.
(fs->boot-device): Remove.
(operating-system-boot-parameters): Use 'file-system-device' instead of
'fs->boot-device'.
(device->sexp): Add case for 'file-system-label?'.
* gnu/bootloader/grub.scm (grub-root-search): Add case for
'file-system-label?'.
* gnu/system/examples/bare-bones.tmpl,
gnu/system/examples/beaglebone-black.tmpl,
gnu/system/examples/lightweight-desktop.tmpl,
gnu/system/examples/vm-image.tmpl: Remove uses of 'title'.
* gnu/system/vm.scm (virtualized-operating-system): Remove uses of
'file-system-title'.
* guix/scripts/system.scm (check-file-system-availability): Likewise,
and adjust fix-it hint.
(check-initrd-modules)[file-system-/dev]: Likewise.
* gnu/build/file-systems.scm (canonicalize-device-spec): Remove 'title'
parameter.
[canonical-title]: Remove.
Match on SPEC's type rather than on CANONICAL-TITLE.
(mount-file-system): Adjust caller.
* gnu/build/linux-boot.scm (boot-system): Interpret ROOT here.
* gnu/services/base.scm (file-system->fstab-entry): Remove use of
'file-system-title'.
* doc/guix.texi (File Systems): Remove documentation of the 'title'
field. Rewrite documentation of 'device' and document
'file-system-label'.
2018-05-28 13:24:11 +02:00
25816c4306
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-05-27 17:39:29 -04:00
8a6d16b897
gnu: clementine: Update snapshot.
...
* gnu/package/music.scm (clementine): Update snapshot to 4619a4c1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:06 +03:00
1222a64c02
gnu: libechonest: Remove package.
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It appears the "EchoNest" service isn't available anymore which makes this
package obsolete.
* gnu/packages/music.scm (libechonest): Remove variable.
(clementine)[inputs]: Remove libechonest.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:05 +03:00
01c4869003
gnu: libmygpo-qt: Fix Qt 5.11 build.
...
The update to Qt 5.11.0 broke libmygpo-qt. It turned it was using a deprecated
CMake function (qt5_use_moduldes). Let's pick up two upstream patches that
fix the issue: https://github.com/gpodder/libmygpo-qt/pull/15
As mentioned in the the pull request, there is now a test failure but it looks
harmless.
* gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch,
gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/music.scm (libmygpo-qt)[source]: Add patches.
[arguments]: Build tests but do not run them.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:01 +03:00
2101cc3fb6
gnu: gnu: Make alsa find its plugins by setting ALSA_PLUGIN_DIR.
...
* gnu/packages/patches/alsa-lib-add-environment-variable.patch: New
file.
* gnu/packages/linux.scm (alsa-lib)[source]: Use it.
[native-search-paths]: Add ALSA_PLUGIN_DIR.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-05-27 19:05:34 +02:00
3a69f5f2d3
gnu: Add java-logback-classic.
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* gnu/packages/java.scm (java-logback-classic): New variable.
2018-05-27 18:47:15 +02:00
7d8207a4c1
gnu: Add java-logback-core.
...
* gnu/packages/java.scm (java-logback-core): New variable.
2018-05-27 18:47:09 +02:00
3402e651c8
gnu: Add java-janino.
...
* gnu/packages/java.scm (java-janino): New variable.
2018-05-27 18:47:07 +02:00
3fa18fe796
gnu: Add java-commons-compiler.
...
* gnu/packages/java.scm (java-commons-compiler): New variable.
2018-05-27 18:47:05 +02:00
66006fe526
gnu: Add java-commons-jxpath.
...
* gnu/packages/java.scm (java-commons-jxpath): New variable.
2018-05-27 18:47:03 +02:00
7049dea185
gnu: Add java-eclipse-sisu-plexus.
...
* gnu/packages/java.scm (java-eclipse-sisu-plexus): New variable.
2018-05-27 18:47:01 +02:00
1a1810f534
gnu: Add java-eclipse-sisu-inject.
...
* gnu/packages/java.scm (java-eclipse-sisu-inject): New variable.
2018-05-27 18:46:58 +02:00
a1a5ef2094
gnu: Add java-jsr250.
...
* gnu/packages/java.scm (java-jsr250): New variable.
2018-05-27 18:46:38 +02:00
9b9db6c482
gnu: xonotic: Correct licenses.
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* gnu/packages/games.scm (xonotic-data)[license]: Refer to correct file.
* gnu/packages/games.scm (xonotic)[license]: Refer to correct file.
2018-05-27 10:24:06 +02:00
865003433f
gnu: qtconnectivity: Enable previously failing test.
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* gnu/packages/qt.scm (qtconnectivity)[arguments]: Remove custom
'disable-failing-tests phase.
2018-05-27 10:21:33 +03:00
1f52eb7be7
gnu: qt: Update to 5.11.0.
...
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2,
qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d,
qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech):
Update to 5.11.0.
[source]: Update source uri.
(qtbase)[source]: Don't remove bundled sqlite.
[inputs]: Remove sqlite.
[arguments]: Use 'invoke'. Use bundled sqlite.
(qtsvg, qtmultimedia, qtcanvas3d)[arguments]: Use 'invoke'.
(qtremoteobjects)[arguments]: Skip new integration test.
2018-05-27 09:05:56 +03:00
1640f16e78
Merge branch 'master' into core-updates
2018-05-27 01:26:09 -04:00
a4e45acdc0
gnu: linux-libre: Update to 4.16.12.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.12.
(%linux-libre-hash): Update hash.
2018-05-27 01:23:26 -04:00
52a1379814
gnu: linux-libre@4.14: Update to 4.14.44.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.44.
(%linux-libre-4.14-hash): Update hash.
2018-05-27 01:22:36 -04:00
ce9484d851
gnu: linux-libre@4.9: Update to 4.9.103.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.103.
2018-05-27 01:21:55 -04:00
ab7da7bc39
gnu: linux-libre@4.4: Update to 4.4.133.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.133.
2018-05-27 01:20:01 -04:00
e8f4d53e03
gnu: Add pybind11.
...
* gnu/packages/python.scm (pybind11): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-26 22:24:23 +02:00
0d529a7c6a
gnu: gifsicle: New variable.
...
* gnu/packages/image.scm (gifsicle): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-05-26 22:22:16 +02:00
5735256d0b
gnu: Add upx.
...
* gnu/packages/compression.scm (upx): New variable.
2018-05-26 22:11:18 +02:00
719871771d
gnu: Add ucl.
...
* gnu/packages/compression.scm (ucl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-26 22:00:59 +02:00
e0f415b2b5
gnu: xapers: Fix recommended packages
...
* gnu/packages/search.scm (xapers): [inputs]: remove python, poppler
[propagated-inputs]: add poppler, xclip, xdg-utils.
[arguments]: modify-phases to disable x-terminal options.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-26 21:48:38 +02:00
dc70ff2a86
gnu: Add xonotic.
...
* gnu/packages/games.scm (xonotic, xonotic-data): New variables.
Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-05-26 18:15:39 +02:00
b9d562284c
gnu: x265: Update to 2.8.
...
* gnu/packages/video.scm (x265): Update to 2.8.
2018-05-26 17:13:20 +02:00
d5c472a216
gnu: p11-kit: Update to 0.23.11.
...
* gnu/packages/tls.scm (p11-kit): Update to 0.23.11.
[arguments]: Add #:phases. Drop new "runtime" test.
2018-05-26 17:04:18 +02:00
26633cb8b3
gnu: samba: Update to 4.8.2.
...
* gnu/packages/samba.scm (samba): Update to 4.8.2.
2018-05-26 17:04:18 +02:00
6ce76bdc31
gnu: whois: Update to 5.3.1.
...
* gnu/packages/networking.scm (whois): Update to 5.3.1.
[inputs]: Change from LIBIDN to LIBIDN2.
2018-05-26 17:04:17 +02:00
80746f97f1
gnu: vte: Update to 0.52.2.
...
* gnu/packages/gnome.scm (vte): Update to 0.52.2.
2018-05-26 17:04:17 +02:00
bbb56dc7b6
gnu: feh: Update to 2.26.3.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.26.3.
2018-05-26 17:04:17 +02:00
b3884bbfc5
gnu: rust: Fix typo.
...
* gnu/packages/rust.scm (rust-bootstrap)[description]: s/manaer/manager.
2018-05-26 17:04:17 +02:00
385f8a0930
gnu: wine-staging: Update to 3.9.
...
* gnu/packages/wine.scm (wine-staging): Update to 3.9.
2018-05-26 16:45:47 +02:00
84fbe00a8b
gnu: wine-staging-patchset-data: Update to 3.9.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.9.
2018-05-26 16:45:46 +02:00
4c40ed9d37
gnu: Add scummvm.
...
* gnu/packages/emulators.scm (scummvm): New variable.
2018-05-25 23:19:58 +02:00
0ff4e49a95
gnu: boost: Re-enable context and coroutine libraries on MIPS.
...
* gnu/packages/boost.scm (boost)[arguments]: Remove the extra make-flags
"--without-context", "--without-coroutine", and "--without-coroutine2" that
were previously added on mips64 systems.
2018-05-25 14:07:28 -04:00
43a776e294
gnu: mpfrcx: Update to 0.5.
...
* gnu/packages/algebra.scm (mpfrcx): Update to 0.5 and change licence to
lgpl3+.
2018-05-25 19:52:15 +02:00
c53fa8c83a
gnu: mps-youtube: Update to 0.2.8.
...
* gnu/packages/video.scm (mps-youtube): Update to 0.2.8.
2018-05-25 14:01:57 +02:00
e7ca985973
gnu: footswitch: Update to ca43d53f.
...
* gnu/packages/accessibility.scm (footswitch): Update to ca43d53f.
2018-05-25 14:01:40 +02:00
fbe1b85b63
gnu: openmpi: Add PSM2 (Intel OmniPath) support.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM2 on supported systems.
2018-05-25 13:43:03 +02:00
a560641a60
gnu: openmpi: Reintroduce PSM (Intel TrueScale) support.
...
Fixes a regression introduced in
9129804230
2018-05-25 13:43:03 +02:00
6df2a50ac4
gnu: openmpi: Update to 3.0.1.
...
* gnu/packages/mpi.scm (openmpi): Update to 3.0.1.
[arguments]: In 'remove-absolute' phase, adjust romio file name.
* gnu/packages/maths.scm (scalapack)[arguments]: Add
'set-test-environment' phase.
(slepc-openmpi)[arguments]: Likewise.
(mumps-openmpi)[arguments]: Likewise.
(superlu-dist)[arguments]: In 'check' phase, set
'OMPI_MCA_plm_rsh_agent'.
(scotch)[arguments]: In 'build-esmumps', likewise.
(p4est)[arguments]: Add 'set-test-environment' phase.
(hypre-openmpi)[arguments]: Likewise.
2018-05-25 13:43:03 +02:00
0921eff2a8
gnu: superlu-dist: Update to 5.3.0.
...
* gnu/packages/maths.scm (superlu-dist): Update to 5.3.0.
[source](snippet): Adapt file name and function names to new version.
Remove 'delete-file' call.
2018-05-25 13:43:03 +02:00
98e0b1288f
vm: Pass "panic=1" to Linux.
...
* gnu/build/vm.scm (load-in-linux-vm): Always pass "panic=1" after '-append'.
2018-05-25 13:43:03 +02:00
4806d390cb
gnu: Add python2-gdrivefs.
...
* gnu/packages/python.scm (python2-gdrivefs): New variable.
2018-05-25 10:36:43 +02:00
a037a59f83
gnu: Add python-fusepy.
...
* gnu/packages/python.scm (python-fusepy): New variable,
(python2-fusepy): new variable.
2018-05-25 10:36:43 +02:00
b5a9f49b49
gnu: Add python-gipc.
...
* gnu/packages/python.scm (python-gipc): New variable,
(python2-gipc): new variable.
2018-05-25 10:36:43 +02:00
961bcdf5ac
gnu: Add python-google-api-client.
...
* gnu/packages/python-web.scm (python-google-api-client): New variable,
(python2-google-api-client): new variable.
2018-05-25 10:36:43 +02:00
1ceca46b06
gnu: Add python2-oauth2client.
...
* gnu/packages/python-web.scm (python2-oauth2client): New variable.
2018-05-25 10:36:43 +02:00
c75c9b05e1
gnu: mrustc: Update to 0.0.0-3.b5b7089.
...
* gnu/packages/rust.scm (mrustc): Update to 0.0.0-3.b5b7089.
2018-05-25 00:59:41 +02:00
655ca71329
gnu: Add xsimd.
...
* gnu/packages/cpp.scm (xsimd): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-24 23:38:48 +02:00
914205214c
gnu: ntfs-3g: Link 'mount.ntfs' to 'mount.ntfs-3g'.
...
* gnu/packages/linux.scm (ntfs-3g)[arguments]: Add #:phases.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-24 23:38:47 +02:00
109f022e9d
gnu: gdal: Fix configure flags.
...
* gnu/packages/geo.scm (gdal)[arguments]: Fix configure flags.
2018-05-24 22:14:31 +02:00
c10679f5f1
gnu: gnurl: Update to 7.60.0.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.60.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-24 12:13:52 -04:00
a1b802454a
gnu: Add fastp.
...
* gnu/packages/bioinformatics.scm (fastp): New variable.
2018-05-24 17:49:32 +02:00
26bcd2a2b2
gnu: weston: Disable parallel tests.
...
* gnu/packages/freedesktop.scm (weston): Disable parallel tests.
2018-05-24 15:13:13 +02:00
217af8ae71
gnu: qsynth: Update to 0.5.1.
...
* gnu/packages/audio.scm (qsynth): Update to 0.5.1.
2018-05-24 12:08:52 +02:00
04e7cd8d80
gnu: qjackctl: Update to 0.5.1.
...
* gnu/packages/audio.scm (qjackctl): Update to 0.5.1.
2018-05-24 12:08:52 +02:00
f035e5d0bc
gnu: weston: Update to 4.0.0.
...
* gnu/packages/freedesktop.scm (weston): Update to 4.0.0.
[arguments]: Disable tests.
2018-05-24 12:04:49 +02:00
fd29faa8d6
gnu: Add emacs-desktop-environment.
...
* gnu/packages/emacs.scm (emacs-desktop-environment): New variable.
2018-05-24 10:59:00 +02:00
a31d7334c2
gnu: mate-desktop-service-type: Add description.
...
* gnu/services/desktop.scm (mate-desktop-service-type): Add description.
2018-05-24 10:15:51 +02:00
d1ae687967
gnu: gnome-desktop-service-type: Add description.
...
* gnu/services/desktop.scm (gnome-desktop-service-type): Add description.
2018-05-24 10:15:27 +02:00
1259167348
gnu: Add r-analytics.
...
* gnu/packages/cran.scm (r-analytics): New variable.
2018-05-24 09:23:21 +02:00
3146aab7a8
gnu: r-minimal: Add tcl/tk support.
...
* gnu/packages/statistics.scm (r-minimal)[inputs]: Add tcl and tk.
[arguments]: Add configure flags to enable tcl and tk support.
2018-05-24 09:23:18 +02:00
9d10a63402
Merge branch 'master' into core-updates
2018-05-24 02:34:08 -04:00
11c237f54e
gnu: mes: Update to 0.14.
...
* gnu/packages/mes.scm (mes): Use nyacc-for-mes. Update to 0.14.
2018-05-24 07:50:04 +02:00
0b68943066
gnu: mescc-tools: Update to 0.4.
...
* gnu/packages/mes.scm (mescc-tools): Update to 0.4.
2018-05-24 07:50:03 +02:00
d236c51c17
gnu: Add nyacc-for-mes.
...
* gnu/packages/mes.scm (nyacc-for-mes): New variable.
2018-05-24 07:49:58 +02:00
b7290048ea
gnu: linux-libre: Update to 4.16.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.11.
(%linux-libre-hash): Update hash.
2018-05-24 01:15:22 -04:00
a75702d242
gnu: linux-libre@4.14: Update to 4.14.43.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.43.
(%linux-libre-4.14-hash): Update hash.
2018-05-24 01:14:34 -04:00
24c9d8b084
gnu: linux-libre@4.9: Update to 4.9.102.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.102.
2018-05-24 01:13:34 -04:00
ad3068b5f1
gnu: procps: Update to 3.3.15 [fixes CVE-2018-{1122,1123,1124,1125,1126}].
...
* gnu/packages/linux.scm (procps): Update to 3.3.15.
2018-05-23 20:47:30 -04:00
2b9be1a63a
gnu: Add postgis.
...
* gnu/packages/geo.scm (postgis): New variable.
2018-05-23 23:07:10 +02:00
996e45cbf7
gnu: Add gdal.
...
* gnu/packages/geo.scm (gdal): New variable.
2018-05-23 23:06:50 +02:00
34fb6c51ca
gnu: connman: Update to 1.36.
...
* gnu/packages/connman.scm (connman): Update to 1.36.
2018-05-23 15:29:35 +02:00
8c8d015077
gnu: python-gitpython: Update to 2.1.10.
...
* gnu/packages/version-control.scm (python-gitpython): Update to 2.1.10.
2018-05-23 15:29:35 +02:00
8332ac031c
gnu: simplescreenrecorder: Update to 0.3.11.
...
* gnu/packages/video.scm (simplescreenrecorder): Update to 0.3.11.
[inputs]: Use defaut FFMPEG version.
2018-05-23 15:29:34 +02:00
a5a568d246
gnu: redshift: Update to 1.12.
...
* gnu/packages/xdisorg.scm (redshift): Update to 1.12.
2018-05-23 15:29:34 +02:00
0b1e903d1e
gnu: stunnel: Update to 5.45.
...
* gnu/packages/web.scm (stunnel): Update to 5.45.
2018-05-23 15:29:34 +02:00
1115119202
gnu: parallel: Update to 20180522.
...
* gnu/packages/parallel.scm (parallel): Update to 20180522.
2018-05-23 15:29:33 +02:00
27f44a46df
gnu: tor: Update to 0.3.3.6 [security fixes].
...
* gnu/packages/tor.scm (tor): Update to 0.3.3.6.
2018-05-23 15:29:33 +02:00
b284877c31
gnu: x265: Return a boolean from the snippet.
...
* gnu/packages/video.scm (x265)[source]: End snippet with #t.
2018-05-23 15:29:33 +02:00
afe0c03a4e
gnu: x265: Update to 2.7.
...
* gnu/packages/video.scm (x265): Update to 2.7.
2018-05-23 15:29:32 +02:00
a4ab65ee79
gnu: pigx-scrnaseq: Update to 0.0.4.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.4.
2018-05-23 15:27:32 +02:00
6623bd826b
gnu: libusb-for-axoloti: Adjust patch.
...
* gnu/packages/patches/libusb-for-axoloti.patch: Adjust patch for use with
current version of libusb.
2018-05-23 15:23:01 +02:00
8efe2a22ea
gnu: Use "code" instead of "indent".
...
This is a follow-up to commit e470abf8b7
2018-05-23 13:59:46 +02:00
6c7d0620cf
gnu: Use "code" instead of "indent".
...
This is a follow-up to commit e470abf8b7
2018-05-23 13:58:40 +02:00
21290c35b1
gnu: Add go-github-com-tevino-abool.
...
* gnu/packages/golang.scm (go-github-com-tevino-abool): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-23 13:53:14 +02:00
28380e0e28
gnu: Add go-github-com-stretchr-testify.
...
* gnu/packages/golang.scm (go-github-com-stretchr-testify): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-23 13:53:14 +02:00
c4230cda09
gnu: Add go-github-com-jpillora-backoff.
...
* gnu/packages/golang.scm (go-github-com-jpillora-backoff): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-23 13:53:14 +02:00
0972411a57
gnu: Add go-github-com-hashicorp-go-version.
...
* gnu/packages/golang.scm (go-github-com-hashicorp-go-version): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-23 13:53:14 +02:00
8c5a69aa00
gnu: Add go-github-com-getsentry-raven-go.
...
* gnu/packages/golang.scm (go-github-com-getsentry-raven-go): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-23 13:53:14 +02:00
fb50664f6b
gnu: Add go-github-com-burntsushi-toml.
...
* gnu/packages/golang.scm (go-github-com-burntsushi-toml): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-23 13:53:13 +02:00
2b47ebe1a6
gnu: Add r-learnr.
...
* gnu/packages/cran.scm (r-learnr): New variable.
2018-05-23 13:48:57 +02:00
94a8990f78
gnu: Add r-rappdirs.
...
* gnu/packages/cran.scm (r-rappdirs): New variable.
2018-05-23 13:48:57 +02:00
e470abf8b7
gnu: Move 'indent' to code.scm.
...
Suggested by Pierre Neidhardt <ambrevar@gmail.com>.
* gnu/packages/indent.scm: Remove. Move 'indent' to...
* gnu/packages/code.scm (indent): ... here. New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove indent.scm.
2018-05-23 12:14:27 +02:00
c1e5109b68
gnu: Move 'astyle' to code.scm.
...
Suggested by Pierre Neidhardt <ambrevar@gmail.com>.
* gnu/packages/pretty-print.scm (astyle): Move to...
* gnu/packages/code.scm (astyle): ... here. New variable.
2018-05-23 12:14:12 +02:00
9c4dcfaf66
gnu: Add uncrustify.
...
* gnu/packages/code.scm (uncrustify): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-23 12:09:37 +02:00
56f9d442e0
vm: Use a deterministic file system UUID in shared-store VMs.
...
* gnu/system/vm.scm (system-qemu-image/shared-store): Pass
#:file-system-uuid to 'qemu-image'.
2018-05-23 10:21:02 +02:00
353df40102
vm: Print the label and UUID of partitions.
...
* gnu/build/vm.scm (create-ext-file-system): Print the label and UUID.
2018-05-23 10:21:02 +02:00
d282388789
linux-initrd: Enable "virtio-rng".
...
Fixes <https://bugs.gnu.org/31268 >.
* gnu/system/linux-initrd.scm (default-initrd-modules)[virtio-modules]:
Add "virtio-rng".
2018-05-23 10:21:02 +02:00
b2086776f1
gnu: gimp-fourier: Fix build.
...
* gnu/packages/gimp.scm (gimp-fourier)[arguments]: Copy gegl-0.4.pc to
gegl-0.3.pc in the configure phase.
[inputs]: Add gegl.
2018-05-23 10:08:20 +02:00
4935701a4a
Revert "gnu: cmake: Delete Emacs library."
...
This reverts commit f037673c31
2018-05-22 14:39:53 -04:00
aa4818c33b
gnu: cmake.scm: Add missing module.
...
* gnu/packages/cmake.scm: Import emacs-build-system.
2018-05-22 17:37:14 +03:00
bbdf36666b
gnu: Add emacs-cmake-mode.
...
* gnu/packages/cmake.scm (emacs-cmake-mode): New public variable.
2018-05-22 17:20:46 +03:00
f037673c31
gnu: cmake: Delete Emacs library.
...
* gnu/packages/finance.scm (cmake)[arguments]: Delete Emacs library.
2018-05-22 17:16:40 +03:00
0f5ad3a1bc
gnu: bismark: Patch bismark2report before installing.
...
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Patch file before
installing it.
2018-05-22 16:05:41 +02:00
71d3521541
gnu: Add emacs-esh-autosuggest.
...
* gnu/packages/emacs.scm (emacs-esh-autosuggest): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-05-22 12:26:01 +02:00
35d438439c
gnu: emacs-daemons: Fix typo in description.
...
* gnu/packages/emacs.scm (emacs-daemons)[description]: Fix typo.
2018-05-22 12:16:49 +02:00
bdadf8557e
gnu: Add emacs-daemons.
...
* gnu/packages/emacs.scm (emacs-daemons): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-05-22 12:15:33 +02:00
6b84d396e0
gnu: gstreamer: Update to 4.14.1.
...
* gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base, gst-plugins-good)
(gst-plugins-bad, gst-plugins-ugly, gst-libav, python-gst): Update to 4.14.1.
2018-05-22 04:35:40 -04:00
4e2432d1b2
gnu: isc-dhcp: Update to 4.4.1.
...
* gnu/packages/admin.scm (isc-dhcp): Update to 4.4.1. Update bundled copy of
bind to 9.11.3.
[license]: Change license to MPL-2.0.
2018-05-22 04:35:32 -04:00
096c10cb47
gnu: mutt: Update to 1.10.0.
...
* gnu/packages/mail.scm (mutt): Update to 1.10.0.
2018-05-21 15:35:20 -04:00
ab9da9ec66
Merge branch 'master' into core-updates
2018-05-21 13:41:18 -04:00
4699ffa383
gnu: procps: Update to 3.3.14.
...
* gnu/packages/linux.scm (procps): Update to 3.3.14.
[arguments]: Remove obsolete phase 'disable-strtod-test' because the change has
been upstreamed.
2018-05-21 13:34:18 -04:00
7d798b3bb3
gnu: curl: Update replacement to 7.60.0 [Fixes CVE-2018-{1000300,1000301}].
...
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.60.0.
(curl-7.59.0): Replace with ...
(curl-7.60.0): ... new variable.
2018-05-21 13:34:18 -04:00
27135cf447
gnu: BIND: Update to 9.12.1-P2 [fixes CVE-2018-{5736,5737}].
...
* gnu/packages/dns.scm (isc-bind): Update to 9.12.1-P2.
2018-05-21 13:34:18 -04:00
6bc85e79c2
gnu: pius: Really add the patch file.
...
* gnu/packages/patches/pius.patch: New file.
This is a follow-up to commit a92d97266d
2018-05-21 19:24:51 +02:00
0661758e13
Merge branch 'master' into core-updates
2018-05-21 13:22:32 -04:00
c036959b1a
gnu: linux-libre: Update to 4.16.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.10.
(%linux-libre-hash): Update hash.
2018-05-21 13:20:18 -04:00
b1bb1e8429
gnu: linux-libre@4.14: Update to 4.14.42.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.42.
(%linux-libre-4.14-hash): Update hash.
2018-05-21 13:19:33 -04:00
e205afbd1c
gnu: linux-libre@4.9: Update to 4.9.101.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.101.
2018-05-21 13:18:41 -04:00
a92d97266d
gnu: pius: Fix incompatibility with newer GnuPG versions.
...
* gnu/packages/gnupg.scm (pius)[source]: Add patch.
* gnu/packages/patches/pius.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-05-21 17:05:56 +02:00
fcb1dd9994
gnu: pius: Add input python2-sip.
...
* gnu/packages/gnupg.scm (pius)[inputs]: Add python2-six, imported from
the pius Python script.
2018-05-21 16:55:11 +02:00
c9dbcd208d
gnu: aria2: Update to 1.34.0.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.34.0.
2018-05-21 13:25:34 +03:00
f1656a59f4
gnu: Add can-utils.
...
* gnu/packages/networking.scm (can-utils): New variable.
2018-05-21 02:33:28 +02:00
5a9dc4a807
gnu: linux-libre: Enable build for aarch64-linux.
...
* gnu/packages/linux.scm (%linux-compatible-systems): Add aarch64-linux.
(linux-libre-4.14): Limit to x86_64-linux, i686-linux and armhf-linux.
* gnu/packages/aux-files/linux-libre/4.16-arm64.conf: New file.
* Makefile.am (AUX_FILES): Add 4.16-arm64.conf.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-21 00:12:02 +02:00
a8e3fd5f9d
gnu: linux-libre: Use "make dtbs_install" to install device tree files.
...
* gnu/packages/linux.scm (make-linux-libre):
Use "make dtbs_install" to install device tree files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-20 23:36:59 +02:00
62813c10a9
gnu: Add vigra-c.
...
* gnu/packages/image.scm (vigra-c): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-20 23:34:27 +02:00
1900fa792f
gnu: Add python-glob2.
...
* gnu/packages/python.scm (python-glob2, python2-glob2): New variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-20 23:20:37 +02:00
dea5c0b8d0
gnu: Add ghc-bytes.
...
* gnu/packages/haskell.scm (ghc-bytes): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-20 22:58:50 +02:00
6c4ae17334
gnu: Add ghc-semigroupoids-5.2.2.
...
* gnu/packages/haskell.scm (ghc-semigroupoids-5.2.2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-20 22:35:07 +02:00
d8ac798701
services: connman: Add polkit hooks for connman.
...
* gnu/services/networking.scm (connman-service-type): Extend the
polkit-service-type with actions from connman.
2018-05-20 21:42:34 +03:00
19f20f4ffe
services: openntpd: Add openntpd to the system profile.
...
* gnu/services/networking.scm (openntpd-service-type): Extend the
profile-service-type and add openntpd to the system profile.
2018-05-20 21:42:33 +03:00
6a2b906565
services: dbus: Search more directories for '.service' files.
...
* gnu/services/dbus.scm (system-service-directory): Remove one level of
directories when searching for '.service' files.
2018-05-20 21:42:33 +03:00
9b0e51461d
services: connman: Add default configuration to the connman-service-type.
...
* gnu/services/networking.scm (connman-service-type)[default-value]: New
field.
2018-05-20 21:42:32 +03:00
e9d271ed9a
services: Add Enlightenment desktop service.
...
* gnu/services/desktop.scm (<enlightenment-desktop-configuration>,
enlightenment-desktop-service-type): New variables.
* doc/guix.texi (Desktop Services): Document the service.
* NEWS: Mention it.
2018-05-20 21:42:32 +03:00
122f91bd41
gnu: enlightenment: Fix setuid program locations.
...
* gnu/packages/enlightenment.scm (enlightenment)[source]: Add patch.
* gnu/packages/patches/enlightenment-fix-setuid-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-05-20 21:42:25 +03:00
89f8c2ac38
gnu: Add guile-sparql.
...
* gnu/packages/guile.scm (guile-sparql): New variable.
2018-05-19 23:22:24 +02:00
428adbc2c4
gnu: xss-lock: New variable.
...
* gnu/packages/xdisorg.scm (xss-lock): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-19 22:43:37 +02:00
d282fee549
gnu: Add zyre.
...
* gnu/packages/networking.scm (zyre): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-19 22:14:48 +02:00
05ca7a916a
gnu: libsignal-protocol-c: Update to 2.3.2.
...
* gnu/packages/messaging.scm (libsignal-protocol-c): Update to 2.3.2.
2018-05-19 15:39:30 +02:00
ade57b6964
gnu: dash: Update to 0.5.10.2.
...
* gnu/packages/shells.scm (dash): Update to 0.5.10.2.
2018-05-19 15:39:25 +02:00
ca59ce41d6
gnu: emacs-guix: Update to 0.4.
...
* gnu/packages/emacs.scm (emacs-guix): Update to 0.4.
[propagated-inputs]: Add 'emacs-edit-indirect' (new dependency).
[arguments]: Add "--with-editindirect-lispdir" configure flag.
2018-05-19 15:44:01 +03:00
54300cf3e0
gnu: xterm: Update to 333.
...
* gnu/packages/xorg.scm (xterm): Update to 333.
2018-05-19 05:30:11 +02:00
c61d822621
gnu: f-seq: Factorise ‘install’ phase.
...
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Let-bind more.
2018-05-19 05:30:11 +02:00
7c2a46461e
gnu: r-amap: Update to 0.8-16.
...
* gnu/packages/cran.scm (r-amap): Update to 0.8-16.
2018-05-19 05:30:10 +02:00
c8ac880c9c
gnu: r-modelr: Update to 0.1.2.
...
* gnu/packages/cran.scm (r-modelr): Update to 0.1.2.
2018-05-19 00:59:35 +02:00
bb03470814
gnu: perl-io-compress: Update to 2.081.
...
* gnu/packages/compression.scm (perl-io-compress): Update to 2.081.
2018-05-19 00:59:34 +02:00
df9981303e
gnu: perl-compress-raw-bzip2: Update to 2.081.
...
* gnu/packages/compression.scm (perl-compress-raw-bzip2): Update to 2.081.
2018-05-19 00:59:34 +02:00
e81400ceb0
gnu: perl-compress-raw-zlib: Update to 2.081.
...
* gnu/packages/compression.scm (perl-compress-raw-zlib): Update to 2.081.
2018-05-19 00:59:34 +02:00
14a852bdd7
gnu: qjackrcd: Use INVOKE.
...
* gnu/packages/audio.scm (qjackrcd)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-19 00:59:24 +02:00
042fa63856
gnu: cava: Update to 0.6.1.
...
* gnu/packages/audio.scm (cava): Update to 0.6.1.
2018-05-19 00:49:48 +02:00
aabe29af0d
gnu: gsm: Update to 1.0.18.
...
* gnu/packages/audio.scm (gsm): Update to 1.0.18.
2018-05-19 00:49:48 +02:00
1d40a822b6
gnu: fluidsynth: Update to 1.1.11.
...
* gnu/packages/audio.scm (fluidsynth): Update to 1.1.11.
2018-05-19 00:49:47 +02:00
263c9941a1
uuid: 'uuid' returns #f when 'string->uuid' returns #f.
...
* gnu/system/uuid.scm (uuid): When STR is not a literal, return #f when
'string->uuid' returns #f.
* tests/uuid.scm ("uuid, dynamic value"): New test.
2018-05-19 00:14:52 +02:00
a48d345041
file-systems: Do not export <file-system>.
...
* gnu/system/file-systems.scm (<file-system>): Do not export.
* gnu/system.scm (operating-system-root-file-system): Use an accessor
instead of 'match'.
2018-05-19 00:14:52 +02:00
9f7d666566
system: Add u-boot-pine64-plus installer.
...
* gnu/bootloader/u-boot.scm (u-boot-pine64-plus-bootloader):
New exported variable.
* gnu/system/install.scm (pine64-plus-installation-os):
New exported variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-05-18 20:21:30 +02:00
6ee3f3dec7
services: cgit: Make project-list permit a file-object.
...
Instead of having the service manage the list, it's useful to be able to point
this at an existing file, for example, when using cgit together with gitolite.
* gnu/services/cgit.scm (project-list?): New procedure.
(serialize-project-list): Handle file-object values.
(<cgit-configuration>): Change the predicate for project-list to allow lists
and file-objects.
2018-05-18 17:24:39 +01:00
c3343d62f6
services: cgit: Improve handling of extra-options.
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* gnu/services/cgit.scm (serialize-cgit-configuration): Add the extra options,
one per line, before the scan-path, as this makes it possible to use the
extra-options to affect the global behaviour for repositories.
(serialize-extra-options): New procedure.
2018-05-18 17:24:39 +01:00
57c5aa7c7d
gnu: cgit: Fix included scripts.
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Fix the about-formatting.sh, syntax-highlighting.py and html-converters files.
* gnu/packages/version-control.scm (cgit)[arguments]: Include
about-formatting.sh and the html-converters in the patch-absolute-file-names
phase and add a wrap-python-scripts phase to wrap syntax-highlighting.py and
the md2html converter.
[inputs]: Add groff, python, python-docutils, python-markdown and
python-pygments.
2018-05-18 17:24:37 +01:00
ab3950d809
gnu: acpica: Update to 20180508.
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* gnu/packages/admin.scm (acpica): Update to 20180508.
2018-05-18 17:41:40 +02:00
e352a15362
gnu: cwm: Update to 6.3.
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* gnu/packages/wm.scm (cwm): Update to 6.3.
2018-05-18 17:41:40 +02:00
711f5f13bf
gnu: r-httpuv: Update to 1.4.3.
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* gnu/packages/web.scm (r-httpuv): Update to 1.4.3.
2018-05-18 17:41:00 +02:00
c338c74676
gnu: r-rjson: Update to 0.2.18.
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* gnu/packages/web.scm (r-rjson): Update to 0.2.18.
2018-05-18 17:41:00 +02:00
067fb62a1a
gnu: r-rsqlite: Update to 2.1.1.
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* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.1.
2018-05-18 17:40:59 +02:00
33fdde8d7c
gnu: python-monotonic: Update to 1.5.
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* gnu/packages/time.scm (python-monotonic): Update to 1.5.
2018-05-18 17:40:59 +02:00
23e24ff6cc
gnu: libmatroska: Update to 1.4.9.
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* gnu/packages/video.scm (libmatroska): Update to 1.4.9.
[build-system]: Switch to the CMake build system.
[native-inputs]: Remove PKG-CONFIG.
[arguments]: Build shared libaries and don't try to run non-existent
tests.
2018-05-18 17:40:59 +02:00
f3d8918106
gnu: libebml: Update to 1.3.6.
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* gnu/packages/xml.scm (libebml): Update to 1.3.6.
[source]: Apply ‘libebml-use-limits-not-climits.patch’ to build.
[build-system]: Switch to the CMake build system.
[arguments]: Build shared libaries and don't try to run non-existent
tests.
2018-05-18 17:40:59 +02:00
2676628ffb
gnu: Add u-boot-tools.
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* gnu/packages/bootloaders.scm (u-boot-tools): New variable.
2018-05-18 02:55:55 +02:00
Efraim Flashner