21b7cf4287
gnu: Add perl-file-pushd.
...
* gnu/packages/perl.scm (perl-file-pushd): New variable
2017-03-26 11:33:35 +02:00
6ff5e9baea
gnu: denemo: Update to 2.1.
...
* gnu/packages/music.scm (denemo): Update to 2.1.
2017-03-26 12:13:27 +03:00
81e752d92e
gnu: linux-libre: Update to 4.10.5.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.5.
(%linux-libre-hash): Update hash.
2017-03-26 03:12:33 -04:00
bd0423262a
gnu: linux-libre@4.9: Update to 4.9.17.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.17.
2017-03-26 03:10:25 -04:00
3c67367612
gnu: linux-libre@4.4: Update to 4.4.56.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.56.
2017-03-26 03:09:06 -04:00
5f19fb6a26
system: grub: Don't attempt to load non-EFI modules on EFI.
...
This resulted in a couple of harmless warnings just before the menu is
displayed.
* gnu/system/grub.scm (eye-candy)[setup-gfxterm-body]: Move 'vbe' and
'vga' loading to the non-EFI branch.
2017-03-25 22:50:24 +01:00
c5be3467f2
gnu: python2-dogtail: Update to 0.9.9.
...
* gnu/packages/python.scm (python2-dogtail): Update to 0.9.9.
[source]: Download using pypi-uri scheme.
2017-03-25 23:53:03 +03:00
17fc8da3dd
gnu: git: Update to 2.12.2.
...
* gnu/packages/version-control.scm (git): Update to 2.12.2.
2017-03-25 20:17:04 +01:00
5e53557ed0
gnu: maim: Update to 4.4.62.
...
* gnu/packages/xdisorg.scm (maim): Update to 4.4.62.
2017-03-25 20:12:44 +01:00
90ff097995
gnu: youtube-dl: Update to 2017.03.24.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.24.
2017-03-25 19:40:10 +01:00
7e58cbbb39
gnu: Add shellcheck.
...
* gnu/packages/haskell.scm (shellcheck): New variable.
2017-03-25 15:02:11 +01:00
6f8016f4d8
gnu: Add ghc-json.
...
* gnu/packages/haskell.scm (ghc-json): New variable.
2017-03-25 15:00:18 +01:00
070e1fe99a
gnu: Add emacs-symon.
...
* gnu/packages/emacs.scm (emacs-symon): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-24 17:24:26 -04:00
9260b9d100
services: Add inetd-service-type.
...
* gnu/services/networking.scm (<inetd-configuration>, <inetd-entry>): New
record types.
(inetd-config-file, inetd-shepherd-service): New procedures.
(inetd-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
* gnu/tests/networking.scm: New file.
* gnu/local.mk: Add it.
2017-03-24 17:45:56 +01:00
85ac401acf
services: openvpn: Fix a typo which was corrected in generated doc.
...
* gnu/services/vpn.scm (define-split-configuration): Fix typo.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:18 +01:00
bfbf6e1e10
gnu: Add tlp service.
...
* gnu/services/pm.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/tlp.scm.
* doc/guix.texi (Power management Services): New section.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:17 +01:00
d02c3c2234
services: configuration: Rewrite id procedure.
...
* gnu/services/configuration.scm (id): Replace it using the more concise
version found in messaging.scm.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:17 +01:00
e7c797f348
services: Factorize define-maybe macro.
...
* gnu/services/configuration.scm (id): New procedure extracted from
define-configuration.
(define-maybe): New exported procedure, moved from messaging.scm.
* gnu/services/messaging.scm (define-maybe): Remove it.
(id): Move declaration inside define-all-configurations which is now
the only caller procedure.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:17 +01:00
32e75b4808
gnu: tlp: Read configuration from /etc/tlp.
...
* gnu/packages/linux.scm (tlp): Set TLP_CONF to "/etc/tlp".
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-24 16:09:16 +01:00
4d3d3bd217
gnu: Add emacs-aggresive-indent-mode.
...
* gnu/packages/emacs.scm (emacs-aggressive-indent): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-03-24 14:19:00 +01:00
3d39ab456d
gnu: ccache: Update to 3.3.4.
...
* gnu/packages/ccache.scm (ccache): Update to 3.3.4.
2017-03-24 14:53:21 +03:00
2e200ee8c0
gnu: talloc: Update to 2.1.9.
...
* gnu/packages/samba (talloc): Update to 2.1.9.
[home-page]: Use https.
2017-03-24 14:16:09 +03:00
c8c1470451
gnu: samba: Update to 4.5.7 [fixes CVE-2017-2619].
...
* gnu/packages/samba.scm (samba): Update to 4.5.7.
2017-03-24 14:14:52 +03:00
697ddb8850
services: guix-publish: Add 'compression-level' and 'nar-path' fields.
...
* gnu/services/base.scm (<guix-publish-configuration>)[compression-level,
nar-path]: New fields.
(guix-publish-shepherd-service): Honor them.
* doc/guix.texi (Base Services): Document them.
2017-03-24 00:23:29 +01:00
f1e900a3b8
doc: Document 'guix-publish-service-type' instead of 'guix-publish-service'.
...
* doc/guix.texi (Base Services): Document 'guix-publish-service-type'
and 'guix-configuration'. Remove 'guix-publish-service'.
(Invoking guix publish): Mention 'guix-publish-service-type'.
* gnu/services/base.scm (guix-publish-service): Mark as deprecated.
(<guix-configuration>): Export getters.
2017-03-24 00:23:29 +01:00
183303b3ef
gnu: nginx: Update to 1.11.11.
...
* gnu/packages/web.scm (nginx): Update to 1.11.11.
2017-03-23 20:00:06 +01:00
42c127e876
gnu: rustc: Simplify configure phase.
...
* gnu/packages/rust.scm (rustc): Simplify configure phase.
2017-03-23 19:36:10 +01:00
120349bfb4
gnu: rxvt-unicode: Give 'urxvtc.desktop' a unique display name.
...
* gnu/packages/xdisorg.scm (rxvt-unicode)[arguments]: In phase
'install-desktop-urxvtc' add '(client)' to the 'Name' line of the
resulting '.desktop' file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-23 19:33:36 +01:00
359ea6ba29
gnu: knot: Update to 2.4.2.
...
* gnu/packages/dns.scm (knot): Update to 2.4.2.
2017-03-23 18:18:53 +01:00
26b16fd9ca
gnu: python-appdirs: Use pypi-uri.
...
This is a followup to commit 543782e1ff
2017-03-23 12:06:15 -04:00
c53af0016e
gnu: idris: Update to 0.99.1.
...
* gnu/packages/idris.scm (idris): Update to 0.99.1.
[inputs]: Add ghc-code-page.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-23 12:59:03 +01:00
df7309fc6e
gnu: Add ghc-code-page.
...
* gnu/packages/haskell.scm (ghc-code-page): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-23 12:59:03 +01:00
939b6b113b
gnu: star: Update to 2.5.3a.
...
* gnu/packages/bioinformatics.scm (star): Update to 2.5.3a.
2017-03-23 11:21:08 +01:00
b27bd0b057
gnu: youtube-dl: Update to 2017.03.22.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.22.
2017-03-23 02:53:18 +01:00
a06cd95ab0
gnu: python-natsort: Update to 5.0.2.
...
* gnu/packages/python.scm (python-natsort): Update to 5.0.2.
2017-03-23 02:53:17 +01:00
e17a12482b
gnu: python2-futures: Update to 3.0.5.
...
* gnu/packages/python.scm (python2-futures): Update to 3.0.5.
2017-03-23 02:53:17 +01:00
06fe79f263
gnu: python-rauth: Update to 0.7.3.
...
* gnu/packages/python.scm (python-rauth): Update to 0.7.3.
2017-03-23 02:53:17 +01:00
36e0d9db90
gnu: python-ipaddress: Update to 1.0.18.
...
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.18.
2017-03-23 02:53:16 +01:00
543782e1ff
gnu: python-appdirs: Update to 1.4.3.
...
* gnu/packages/python.scm (python-appdirs): Update to 1.4.3.
2017-03-23 02:53:16 +01:00
80e8d8517a
gnu: python-beautifulsoup4: Update to 4.5.3.
...
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.5.3.
2017-03-23 02:53:15 +01:00
7c4279322e
gnu: python-drmaa: Update to 0.7.7.
...
* gnu/packages/python.scm (python-drmaa): Update to 0.7.7.
2017-03-23 02:53:15 +01:00
fd2662e950
gnu: python-sqlalchemy-utils: Update to 0.32.13.
...
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.13.
2017-03-23 02:53:15 +01:00
745d85b7db
gnu: python-pafy: Update to 0.5.3.1.
...
* gnu/packages/python.scm (python-pafy): Update to 0.5.3.1.
2017-03-23 02:53:14 +01:00
283f04b053
gnu: libffcall: Set source file-name.
...
* gnu/packages/libffcall.scm (libffcall)[source]: Add file-name field.
[home-page]: Use https.
2017-03-22 22:36:43 +02:00
359e9c4215
gnu: chicken: Update to 4.12.0.
...
* gnu/packages/scheme.scm (chicken): Update to 4.12.0.
2017-03-22 15:31:17 -04:00
112d645ffa
gnu: dovecot: Update to 2.2.28.
...
* gnu/packages/mail.scm (dovecot): Update to 2.2.28.
2017-03-22 13:04:29 -04:00
9b7a9580d4
gnu: rustc: Honor max line length.
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* gnu/packages/rust.scm (rustc)[arguments]: patch-tests: Honor max line
length.
2017-03-22 17:41:44 +01:00
61a3137bdd
gnu: guix: Update development snapshot.
...
* gnu/packages/package-management.scm (guix-devel): Update to 73a4645
2017-03-22 16:05:46 +01:00
493ae57eca
gnu: binutils-vc4: Set source file-name.
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* gnu/packages/embedded.scm (binutils-vc4)[source]: Add file-name field.
2017-03-22 16:10:45 +02:00
aeb6fe5fa0
gnu: autoconf-archive: Update to 2017.03.21.
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* gnu/packages/autotools.scm (autoconf-archive): Update to 2017.03.21.
2017-03-22 15:35:59 +02:00
5cd074ea32
gnu: guile: Add 'guile-next' as a deprecated alias.
...
This is a followup to f6396d862f
2017-03-22 14:05:58 +01:00
326249bab8
gnu: rustc: End resultless phases in #t.
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* gnu/packages/rust.scm (rustc): End resultless phases in #t.
2017-03-22 12:59:32 +01:00
54262c5435
gnu: python-pysam: Run tests in parallel.
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* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
2017-03-22 12:33:28 +01:00
71dbf592c4
gnu: python-pysam: Run tests before installation.
...
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
2017-03-22 12:33:28 +01:00
879b521cd0
gnu: python-pysam: Update to 0.10.0.
...
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
2017-03-22 12:33:24 +01:00
0e7c3ba1c0
gnu: perl-mojolicious: Update to 7.29.
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* gnu/packages/perl-web.scm (perl-mojolicious): Update to 7.29.
2017-03-22 12:56:23 +02:00
c70b50efb9
gnu: perl-io-compress: Update to 2.074.
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* gnu/packages/compression.scm (perl-io-compress): Update to 2.074.
[propagated-inputs]: Update minimum versions to 2.074.
2017-03-22 12:50:36 +02:00
c0b7b797a2
gnu: perl-compress-raw-bzip2: Update to 2.074.
...
* gnu/packages/compression.scm (perl-compress-raw-bzip2): Update to 2.074.
2017-03-22 12:45:55 +02:00
02b067d782
gnu: perl-compress-raw-zlib: Update to 2.074.
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* gnu/packages/compression.scm (perl-compress-raw-zlib): Update to 2.074.
2017-03-22 12:40:05 +02:00
d8be338f16
gnu: openssh: Update to 7.5p1.
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* gnu/packages/ssh.scm (openssh): Update to 7.5p1.
2017-03-22 02:37:31 -04:00
22f25392cf
gnu: ntp: Update to 4.2.8p10 [security fixes].
...
Fixes CVE-2016-9042 and CVE-2017-{6451,6452,6455,6458,6459,6460,6462,6463,6464}
and others. See 'NEWS' in the source code for more information.
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p10.
2017-03-22 01:41:41 -04:00
8e71896340
gnu: python-psycopg2: Update to 2.6.2.
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* gnu/packages/python.scm (python-psycopg2): Update to 2.6.2.
2017-03-22 02:03:35 +01:00
35e1a0f1a7
gnu: python-zope-component: Update to 4.3.0.
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* gnu/packages/python.scm (python-zope-component): Update to 4.3.0.
[source]: Use pypi-uri.
2017-03-22 02:03:35 +01:00
c56ad5e291
gnu: python-atomicwrites: Update to 1.1.5.
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* gnu/packages/python.scm (python-atomicwrites): Update to 1.1.5.
2017-03-22 02:03:34 +01:00
4c4d4df393
gnu: python-texttable: Update to 0.8.7.
...
* gnu/packages/python.scm (python-texttable): Update to 0.8.7.
2017-03-22 02:03:34 +01:00
d5c183d134
gnu: python-feedgenerator: Update to 1.9.
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* gnu/packages/python.scm (python-feedgenerator): Update to 1.9.
2017-03-22 02:03:34 +01:00
d25bee2600
gnu: python-wrapt: Update to 1.10.8.
...
* gnu/packages/python.scm (python-wrapt): Update to 1.10.8.
[source]: Use pypi-uri.
2017-03-22 02:03:33 +01:00
b9463fdba2
gnu: python-py: Update to 1.4.32.
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* gnu/packages/python.scm (python-py): Update to 1.4.32.
2017-03-22 02:03:33 +01:00
5095bc7d71
gnu: python-sphinx-cloud-sptheme: Update to 1.8.0.
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* gnu/packages/python.scm (python-sphinx-cloud-sptheme): Update to 1.8.0.
2017-03-22 02:03:33 +01:00
9e59478f8d
gnu: python-wcwidth: Update to 0.1.7.
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* gnu/packages/python.scm (python-wcwidth): Update to 0.1.7.
[source]: Use pypi-uri.
2017-03-22 02:03:32 +01:00
4ffbe8c6d7
gnu: python-markdown: Update to 2.6.8.
...
* gnu/packages/python.scm (python-markdown): Update to 2.6.8.
2017-03-22 02:03:32 +01:00
2d431b0130
gnu: dns: Return #t instead of something undefined.
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* gnu/packages/dns.scm (yadifa, knot)[arguments]: Return #t after calling
‘substitute*’.
(knot)[source]: Return #t after calling ‘delete-file-recursively’.
2017-03-22 02:03:31 +01:00
7dbd75b3cf
file-systems: Add missing docstring.
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* gnu/system/file-systems.scm (file-system-type-predicate): Add
docstring.
2017-03-21 22:33:07 +01:00
278d486b0c
file-systems: Do not use (gnu packages …).
...
Fixes a regression introduced in
7208995426
2017-03-21 22:33:07 +01:00
4f7a9e0bff
gnu: vapoursynth: Update to 37.
...
* gnu/packages/video.scm (vapoursynth): Update to 37.
2017-03-21 22:36:33 +02:00
60092c181c
gnu: zimg: Update to 2.5.
...
* gnu/packages/image.scm (zimg): Update to 2.5.
2017-03-21 22:35:32 +02:00
36f666c63d
tests: ssh: Add a test for SFTP.
...
* gnu/tests/ssh.scm (run-ssh-test): Introduce "SFTP file writing and reading".
Make 'sftp?' a keyword parameter.
(%test-openssh): Pass #:sftp? #t to 'run-ssh-test'.
2017-03-21 20:49:26 +01:00
cfaf4d1165
tests: ssh: Abstract session connection and authentication.
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* gnu/tests/ssh.scm (run-ssh-test): Introduce make-session-for-test,
call-with-connected-session and call-with-connected-session/auth.
(run-ssh-test)["connect"]: Rename to "shell command". Abstract its session
connection and authentication work into the above three functions.
2017-03-21 20:49:26 +01:00
12723370e5
services: openssh: Add 'subsystems' option.
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* gnu/services/ssh.scm (openssh-config-file): Add it.
(<openssh-configuration>)[subsystems]: Add it.
* doc/guix.texi (Networking Services): Document it.
2017-03-21 20:49:26 +01:00
4ca3e9b7b6
services: openssh: Cosmetic changes.
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* gnu/services/ssh.scm (<openssh-configuration>): Reformat to fit in 80
columns.
2017-03-21 20:49:26 +01:00
a42619e5e2
gnu: Add lmms.
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* gnu/packages/music.scm (lmms): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:37:29 -04:00
0b608ec4ce
gnu: Add megaglest.
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* gnu/packages/games.scm (megaglest): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
fb731c9232
gnu: Add megaglest-data.
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* gnu/packages/games.scm (megaglest-data): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
8ea71f2005
gnu: ots: Use 'modify-phases' syntax.
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* gnu/packages/ots.scm (ots)[arguments]: Use 'modify-phases' syntax.
2017-03-21 20:58:52 +02:00
b1d3e0a93b
gnu: ots: Add download mirror.
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* gnu/packages/ots.scm (ots)[source]: Add Debian mirror.
2017-03-21 20:58:51 +02:00
4b0e636701
gnu: Adjust asciidoc-related build options.
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Commits 9099a457923078821d13
2017-03-21 11:15:08 -04:00
ed428a58ec
gnu: Add swaks.
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* gnu/packages/mail.scm (swaks): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 15:42:44 +01:00
3411937b15
gnu: git: Update to 2.12.1.
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* gnu/packages/version-control.scm (git): Update to 2.12.1.
2017-03-21 13:45:57 +01:00
6330ece9e3
gnu: Add perl-ole-storage-lite.
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* gnu/packages/perl.scm (perl-ole-storage-lite): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:47 +01:00
2b9d2df799
gnu: Add perl-crypt-rc4.
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* gnu/pakages/perl.scm (perl-crypt-rc4): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:43 +01:00
4b9a5bd990
gnu: kodi: Wrap executable so it finds libcurl.
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* gnu/packages/kodi.scm (kodi)[arguments]: Add 'wrap' phase.
2017-03-21 12:37:41 +01:00
3b4efb1f45
gnu: dtc: Update to 1.4.4.
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* gnu/packages/bootloaders.scm (dtc): Update to 1.4.4.
[source]: Use mirror://kernel.org.
2017-03-21 01:13:06 +01:00
d3d92ec2ba
gnu: greenisland: Update to 0.9.0.1.
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* gnu/packages/display-managers.scm (greenisland): Update to 0.9.0.1.
2017-03-21 01:13:06 +01:00
38190ea5ef
gnu: vim: Update to 8.0.0494.
...
* gnu/packages/patches/vim-CVE-2017-5953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0494.
[source]: Remove patch.
(vim-full)[arguments]: Add two phases to drop tests and start xorg.
[native-inputs]: Add XORG-SERVER.
2017-03-20 23:35:39 +01:00
f69e20341f
gnu: kodi: Update to 18.0_alpha-0-b35147e.
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* gnu/packages/kodi.scm (libdvdnav/kodi, libdvdread/kodi, libdvdcss/kodi): New
variables.
(kodi): Update to 18.0_alpha-0-b35147e.
[source]: Download from git. Unbundle more stuff.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flag to disable nonfree components. Rework phases
to patch bundled software and bootstrap more libraries.
[native-inputs]: Remove CMAKE, DOXYGEN, GAWK and WHICH. Add LIBDVDCSS/KODI,
LIBDVDNAV/KODI and LIBDVDREAD/KODI.
[inputs]: Remove BOOST, BZIP2, ENCA, GPERF, JASPER, LIBMODPLUG, LIBSAMPLERATE,
LIBXMU, LIBXT, MESA-UTILS, SDL2 and UNZIP. Add FMT, GIFLIB, LCMS and LIBDRM.
[license]: Update for remaining software bundles.
2017-03-20 23:35:39 +01:00
0a15ee7b63
gnu: Add fmt.
...
* gnu/packages/pretty-print.scm (fmt): New variable.
2017-03-20 23:35:39 +01:00
6809d9377b
gnu: ngircd: Use HTTPS.
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* gnu/packages/messaging.scm (ngircd)[source, home-page]: Use HTTPS.
2017-03-20 22:44:06 +01:00
07b7a66526
gnu: ngircd: Use the phrase ‘IRC’ in its description.
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* gnu/packages/messaging.scm (ngircd)[description]: Use ‘IRC’ with @dfn.
2017-03-20 22:44:06 +01:00
341ed63f47
gnu: ngircd: Use ‘modify-phases’ syntax.
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* gnu/packages/messaging.scm (ngircd)[arguments]: Use ‘modify-phases’.
2017-03-20 22:44:06 +01:00
4fd95d9170
gnu: ngircd: Update to 24.
...
* gnu/packages/messaging.scm (ngircd): Update to 24.
[source]: Remove upstreamed DNS lookup patch.
* gnu/packages/patches/ngircd-no-dns-in-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-20 22:44:06 +01:00
500fc65b5b
gnu: znc: Run test suite.
...
* gnu/packages/messaging.scm (znc)[arguments]: Enable tests. Add an
‘unpack-googletest’ phase and add ‘--with-gtest=’ to #:configure-flags.
[native-inputs]: Add googletest source.
2017-03-20 22:44:05 +01:00
f0bce02664
gnu: simple-scan: Update to 3.24.0.
...
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.0.
2017-03-20 22:44:05 +01:00
e2c4fe7c62
gnu: Add r-cairo.
...
* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
94e24d8124
gnu: Add comments on why setting QT_QPA_PLATFORM for tests.
...
* gnu/packages/astronomy.scm (stellarium): Add comment.
* gnu/packages/display-managers.scm (greenisland): dito.
* gnu/packages/kde-frameworks.scm (kguiaddons, kwidgetsaddons,
kcompletion, baloo, kbookmarks, kconfigwidgtes, kdesignerplugin,
kemoticons, kglobalaccel, kiconthemes, kio, knewstuff, kparts,
kpeople, krunner, kservice, ktexteditor, ktextwidgets, kxmlgui,
plasma-framework): dito.
* gnu/packages/qt.scm (qtsvg): dito.
2017-03-20 20:56:49 +01:00
0b5d078f8b
gnu: Add freedoom.
...
* gnu/packages/games.scm (freedoom): New variable.
2017-03-20 14:29:44 -04:00
6f9ba4c91c
gnu: Remove wxwidgets@2.8.
...
* gnu/packages/wxwidgets.scm (wxwidgets@2.8): Remove variable.
2017-03-20 18:33:30 +02:00
36e17ab417
gnu: audacity: Use gtk+@3.
...
* gnu/packages/audacity.scm (audacity)[inputs]: Remove wxwidgets-gtk2,
gtk+@2, add wxwidgets and gtk+.
2017-03-20 18:04:01 +02:00
2314474b01
gnu: wxwidgets: Build with webkitgtk.
...
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Remove webkitgtk@2.4,
add webkitgtk.
2017-03-20 18:02:41 +02:00
4f9998c66f
gnu: snakemake: Add runtime dependencies.
...
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-wrapt and
python-requests.
2017-03-20 15:13:19 +01:00
0420e89682
gnu: mpd: Update to 0.20.6.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.6.
2017-03-19 21:55:09 -04:00
1a0c4437ab
gnu: Add deutex.
...
gnu/packages/game-development.scm (deutex): New variable.
2017-03-19 21:43:05 -04:00
f75b1400ee
gnu: obnam: Enable tests.
...
* gnu/packages/backup.scm (obnam)[arguments]: Replace 'check' phase with
custom function.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:32 +01:00
315944a393
gnu: Add python-pylint.
...
* gnu/packages/python.scm (python-pylint, python2-pylint): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
61550dedf3
gnu: Add python2-coverage-test-runner.
...
* gnu/packages/python.scm (python2-coverage-test-runner): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
23db3fc67d
gnu: Add python-configparser.
...
* gnu/packages/python.scm (python-configparser, python2-configparser): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
965a083ed2
gnu: Add python2-backports-functools-lru-cache.
...
* gnu/packages/python.scm (python2-backports-functools-lru-cache): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
6ba0af7960
gnu: Add python-isort.
...
* gnu/packages/python.scm (python-isort, python2-isort): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
d5ef113c05
gnu: Add python-astroid.
...
* gnu/packages/python.scm (python-astroid, python2-astroid): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
6fdbd86d0f
gnu: Add libircclient.
...
* gnu/packages/messaging.scm (libircclient): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 19:18:06 -04:00
e05fc441cd
gnu: Add pdfgrep.
...
* guix/gnu/packages/pdf.scm (pdfgrep): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 18:30:10 -04:00
8299c697af
gnu: linux-libre: Update to 4.10.4.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.4.
(%linux-libre-hash): Update hash.
2017-03-19 17:18:15 -04:00
92c42164a2
gnu: linux-libre@4.9: Update to 4.9.16.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.16.
2017-03-19 17:16:38 -04:00
9baf0171a4
gnu: linux-libre@4.4: Update to 4.4.55.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.55.
2017-03-19 17:14:56 -04:00
9970ef6134
services: Remove Tab character from source code whitespace.
...
* gnu/services/base.scm (file-system-shepherd-service): Remove Tab character
from source code whitespace.
2017-03-19 21:36:55 +01:00
fc1bfca253
gnu: u-boot: Update to 2017.03.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.03.
2017-03-19 21:35:17 +01:00
6191fef4e0
gnu: icecat: Add selected fixes from upstream mozilla-esr45.
...
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes from
the upstream mozilla-esr45 repository.
2017-03-19 15:55:06 -04:00
512fc6db7b
gnu: libevent@2.0: Add fix from upstream.
...
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.
* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
2017-03-19 15:54:58 -04:00
26e34e1e12
services: file-system-shepherd-service: Make it find the fsck programs.
...
Fixes <https://bugs.gnu.org/25917 >.
* gnu/services/base.scm (file-system-shepherd-service): Use
file-system-packages.
2017-03-19 18:49:30 +01:00
7c86c03109
gnu: guile-commonmark: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-commonmark)[inputs]: Replace GUILE-2.0
with GUILE-2.2.
(guile2.0-commonmark): New variable.
(guile2.2-commonmark): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-COMMONMARK.
2017-03-19 18:14:22 +01:00
bdf1022dec
gnu: guile-reader: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-reader)[inputs]: Change GUILE-2.0 to
GUILE-2.2.
(guile2.0-reader): New variable.
(guile2.2-reader): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-READER instead of
GUILE2.2-READER.
2017-03-19 18:14:22 +01:00
bd19f65a85
gnu: haunt: Default to Guile 2.2.
...
* gnu/packages/guile.scm (haunt)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
[propagated-inputs]: Replace GUILE-READER and GUILE-COMMONMARK with
their 2.2 variant.
(guile2.0-haunt): New variable.
(guile2.2-haunt): Mark as deprecated.
2017-03-19 18:14:22 +01:00
8f4acad71b
gnu: Add 'package-for-guile-2.0'.
...
* gnu/packages/guile.scm (guile-2.2-package-name): Rename to...
(guile-variant-package-name): ... this. Change to return a lambda.
(package-for-guile-2.2): Adjust accordingly.
(package-for-guile-2.0): New procedure.
2017-03-19 18:14:22 +01:00
f6396d862f
gnu: Rename "guile-next" to "guile".
...
* gnu/packages/guile.scm (guile-next): Rename to...
(guile-2.2): ... this. Update users.
[name]: Change to "guile".
[synopsis]: Remove.
[properties]: Remove 'upstream-name', 'ftp-server', and
'ftp-directory'.
* gnu/packages/bioinformatics.scm (rcas-web): Update accordingly.
* gnu/packages/tls.scm (gnutls/guile-2.2): Likewise.
* tests/guix-build.sh: Use 'guile@2.2' instead of 'guile-next'.
* doc/guix.texi (Package Transformation Options): Update examples that
referred to "guile-next".
2017-03-19 18:14:22 +01:00
8df672aad5
gnu: Add GNU Mach.
...
* gnu/packages/hurd.scm (gnumach): New variable.
Co-authored-by: Rene Saavedra <rennes@openmailbox.org>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-19 18:14:22 +01:00
f729a4d8b2
gnu: niftilib: Simplify build phases.
...
* gnu/packages/image.scm (niftilib)[arguments]: Use make-flags instead of
replacing "configure" phase; simplify "install" phase.
2017-03-19 14:26:33 +01:00
eba72e1716
gnu: apl: Update to 1.7.
...
* gnu/packages/apl.scm (apl): Update to 1.7.
[home-page]: Use https.
2017-03-18 21:28:20 +02:00
525acb6e82
gnu: guile-8sync: Update to 0.4.2.
...
* gnu/packages/guile.scm (guile-8sync): Update to 0.4.2.
2017-03-18 12:22:13 -05:00
57d0bdf8c6
gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH.
...
* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
prevent problems anymore.
2017-03-18 18:26:11 +01:00
7601b9f7ce
gnu: wine: Update to 2.4.
...
* gnu/packages/wine.scm (wine): Update to 2.4.
2017-03-18 17:26:02 +01:00
21122bd79e
gnu: Add niftilib.
...
* gnu/packages/image.scm (niftilib): New variable.
2017-03-18 15:25:59 +01:00
d54db52e7f
bug#26152: [PATCH] gnu: limnoria: Update to 20170110.
...
* gnu/packages/irc.scm (limnoria): Update to 20170110.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-18 11:51:21 +01:00
7208995426
file-systems: Factorize file-system-packages.
...
* gnu/system/linux-initrd.scm (base-initrd): Move helper-packages body to ...
* gnu/system/file-systems.scm (file-system-packages): ... here. New variable.
Also export it.
2017-03-18 10:38:51 +01:00
84aac61c81
gnu: rustc: Fix process test.
...
* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests. Add another substitution.
2017-03-18 10:37:02 +01:00
6d5f63b690
gnu: Add maxflow.
...
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
a53d6719bc
gnu: Add itpp.
...
* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
b6bd9a79d4
gnu: emacs-slime: Update to 2.19.
...
* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
2017-03-18 01:49:38 +01:00
55f7a27cee
gnu: ocaml-qtest: Update to 2.5.
...
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
2017-03-18 09:52:29 +10:00
7c78beb33c
gnu: libbluray: Update to 1.0.0.
...
* gnu/packages/video.scm (libbluray): Update to 1.0.0.
2017-03-17 20:41:16 +01:00
715dd13d8e
gnu: libx264: Update to 20170316-2245.
...
* gnu/packages/video.scm (libx264): Update to 20170316-2245.
2017-03-17 20:41:15 +01:00
2a047d59e0
gnu: libwebp: Update to 0.6.0.
...
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
cbef2796ed
gnu: ninja: Update to 1.7.2.
...
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
039601e097
gnu: btrfs-progs: Use @dfn in description.
...
* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
2017-03-17 20:39:58 +01:00
0d3ddd490b
gnu: btrfs-progs: Update to 4.10.1.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
2017-03-17 20:39:58 +01:00
893bc3f402
gnu: cargo: Use upstream cargo.
...
* gnu/packages/rust.scm (cargo): Use upstream cargo.
2017-03-17 16:48:08 +01:00
b0dcb529af
gnu: rust: Update to 1.15.0.
...
* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
2017-03-17 16:48:06 +01:00
8f98581613
gnu: libpng-apng: Remove unnecessary call to libtool.
...
* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
2017-03-17 11:36:27 -04:00
114a325e8f
gnu: Add libpng-apng.
...
* gnu/packages/image.scm (libpng-apng): New variable.
Co-authored-by: Kei Kebreau <kei@openmailbox.org>
2017-03-17 11:25:15 -04:00
0a3063d640
gnu: Add ocaml-mcl.
...
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
2017-03-17 21:43:27 +10:00
ba1be533ad
gnu: Add ocaml-gsl.
...
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
91df9eaefa
gnu: Add ocaml-csv.
...
* gnu/packages/ocaml.scm (ocaml-csv): New variable.
2017-03-17 21:43:13 +10:00
0c4dbdc23e
gnu: Add ocaml-sqlite3.
...
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
2017-03-17 21:19:23 +10:00
ef71ed8ffa
gnu: snakemake: Update to 3.11.2.
...
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
2017-03-17 10:14:03 +01:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
54d556bdd7
gnu: youtube-dl: Update to 2017.03.16.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
2017-03-17 03:11:35 +01:00
3078821d13
gnu: asciidoc: Use local docbook-xml package.
...
* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
2017-03-16 21:35:50 -04:00
f9cdf1c15b
gnu: Add knot.
...
* gnu/packages/dns.scm (knot): New variable.
2017-03-17 02:32:01 +01:00
754667f0eb
gnu: Add liburcu.
...
* gnu/packages/datastructures.scm (liburcu): New variable.
2017-03-17 02:32:00 +01:00
366efcb2fb
gnu: dns: Fix typo and use @dfn in descriptions.
...
* gnu/packages/dns.scm (bind)[description]: Use @dfn to expand acronyms.
(yadifa)[description]: Likewise, and fix a typo.
2017-03-17 02:32:00 +01:00
2ec5ba859f
gnu: linux-libre: Update to 4.10.3.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.3.
(%linux-libre-hash): Update hash.
2017-03-16 19:40:40 -04:00
2044306f05
gnu: linux-libre@4.4: Update to 4.4.54.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.54.
2017-03-16 19:40:39 -04:00
bcc5b74173
gnu: linux-libre@4.9: Update to 4.9.15.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.15.
2017-03-16 19:40:39 -04:00
49ac6dbb0a
gnu: qemu: Fix CVE-2017-{2620,2630}.
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* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
2017-03-16 19:40:08 -04:00
1e5b8beeff
gnu: virglrenderer: Fix CVE-2017-6386.
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* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
2017-03-16 19:39:55 -04:00
34d60c49cb
services: connman: Rework service.
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* gnu/services/networking.scm (connman-service): Remove.
(<connman-configuration>): New record specifying the package
to be used (connman) and whether vpn plugin shall be
disabled (disable-vpn?).
(connman-configuration): New exported variable.
(connman-configuration?): New exported variable.
(connman-service-type): Export it.
* doc/guix.texi (Networking Services): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-16 22:50:14 +01:00
2c715a9223
gnu: password-store: Fix compatibility with GnuPG 2.1.19.
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* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-16 19:58:43 +01:00
2441c28414
gnu: Add r-seurat.
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* gnu/packages/bioinformatics.scm (r-seurat): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-03-16 14:54:58 +01:00
79849358f8
gnu: sra-tools: Update to 2.8.2-1.
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* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
2017-03-16 13:40:36 +01:00
d5e1716239
gnu: ncbi-vdb: Install configuration files.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase
"install-configuration-files".
2017-03-16 13:39:53 +01:00
558e23074e
gnu: ncbi-vdb: Override search path for java-ngs.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl"
to ensure that java-ngs is found by the configure script; remove configure
flag "--with-ngs-java-prefix".
2017-03-16 13:38:39 +01:00
701111989e
gnu: ncbi-vdb: Use modify-phases syntax.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases
syntax.
2017-03-16 10:20:56 +01:00
5021f54787
gnu: ncbi-vdb: Update to 2.8.2.
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* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
2017-03-16 10:19:25 +01:00
6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0.
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* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
2017-03-16 10:18:48 +01:00
Alex Sassmannshausen