40b114c0bb
gnu: dealii: Upgrade to 9.0.1.
...
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch.
[arguments]: Use new MPI configuration flags.
2019-02-13 22:39:12 -06:00
6901878894
Merge branch 'master' into staging
2019-02-14 00:20:28 +01:00
6d433d6ef7
gnu: Add ELPA.
...
* gnu/packages/maths.scm (elpa, elpa-openmpi): New variables.
2019-02-13 14:08:19 -06:00
aa94524052
gnu: petsc: Upgrade to 3.10.3.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.10.3.
2019-02-13 14:08:19 -06:00
f73750e6f4
gnu: scalapack: Remove use of deprecated MPI1 symbols.
...
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scalapack)[source]: Use it.
2019-02-13 14:08:19 -06:00
602a5ef9f3
gnu: OpenBLAS: Update to 0.3.5.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.5.
2019-02-10 21:04:23 +01:00
50a93adc05
Merge branch 'staging'
2019-02-09 15:14:59 +01:00
4714b00e7a
gnu: Add dune-pdelab.
...
* gnu/packages/maths.scm (dune-pdelab): New variable.
2019-02-08 19:15:03 +01:00
85b9371cbe
gnu: Add dune-functions.
...
* gnu/packages/maths.scm (dune-functions): New variable.
2019-02-08 18:29:30 +01:00
0e50630f15
gnu: Add dune-typetree.
...
* gnu/packages/maths.scm (dune-typetree): New variable.
2019-02-08 17:58:32 +01:00
ab03d899ca
gnu: Add dune-alugrid.
...
* gnu/packages/maths.scm (dune-alugrid): New variable.
2019-02-08 17:52:47 +01:00
5a70aa7d69
gnu: Add dune-localfunctions.
...
* gnu/packages/maths.scm (dune-localfunctions): New variable.
2019-02-08 16:26:20 +01:00
ea51d3578c
gnu: Add dune-istl.
...
* gnu/packages/maths.scm (dune-istl): New variable.
2019-02-08 16:26:20 +01:00
ef6e69fdec
gnu: Add dune-grid.
...
* gnu/packages/maths.scm (dune-grid): New variable.
2019-02-08 16:26:20 +01:00
7b84610e21
gnu: hdf5: Upgrade to 1.8.21.
...
* gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21.
[source]: Make version manipulations more readable using match.
2019-02-07 21:20:47 -06:00
7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols.
...
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
2019-02-07 21:20:47 -06:00
2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols.
...
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
2019-02-07 21:20:23 -06:00
242dbd8e5d
gnu: Add dune-geometry.
...
* gnu/packages/maths.scm (dune-geometry): New variable.
2019-02-07 22:36:01 +01:00
3847d1f22f
gnu: Add dune-common.
...
* gnu/packages/maths.scm (dune-common): New variable.
2019-02-07 22:36:01 +01:00
d11840b43e
gnu: wxmaxima: Update to 19.01.3.
...
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
2019-02-06 12:52:27 -05:00
a4362fba0e
gnu: maxima: Update to 5.42.2.
...
* gnu/packages/maths.scm (maxima): Update to 5.42.2.
2019-02-06 12:52:27 -05:00
0747328e31
Merge branch 'master' into staging
2019-01-31 23:32:56 +01:00
fc9c47bd7c
gnu: maxima: Patch hardcoded paths.
...
* gnu/packages/maths.scm: (maxima): Patch hardcoded paths.
[arguments]: Add the phase 'patch-paths' to replace references to sed,
dirname, and head with direct references to the store.
[inputs]: Add sed.
2019-01-26 11:04:23 -05:00
7e309e8a8d
gnu: dealii-openmpi: Setup MPI for tests.
...
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
2019-01-25 13:10:05 -06:00
6161141e91
superlu-dist: Upgrade to 6.1.0.
...
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer
sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ...
[inputs]: ...here. Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags. Add
'set-c++-standard' and 'omp-setup' phases. Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
2019-01-25 13:10:05 -06:00
fd3733432b
scotch: Upgrade to 6.0.6.
...
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
2019-01-25 13:10:05 -06:00
a6b9ebc2fc
gnu: Add Combinatorial BLAS.
...
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
2019-01-25 13:09:47 -06:00
3e2d4e69c3
Merge branch 'master' into staging
2019-01-20 22:12:10 +01:00
6654f8c144
gnu: z3: Update to 4.8.4.
...
* gnu/packages/maths.scm (z3): Update to 4.8.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-18 11:12:59 -05:00
44d10b1f72
gnu: Separate Python core packages from the rest.
...
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
2019-01-15 14:46:44 +01:00
6764f94317
Merge branch 'master' into staging
2019-01-13 01:40:04 +01:00
0aad198e2b
gnu: r-pracma: Update to 2.2.2.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
2019-01-12 23:35:11 +01:00
0e28967250
Merge remote-tracking branch 'origin/master' into staging
2019-01-09 10:52:41 +02:00
59a075047d
gnu: Move OCaml packages away from maths.scm.
...
This removes (gnu packages ocaml) and related build system modules from
the closure of (gnu packages maths).
* gnu/packages/maths.scm (ocaml-gsl, ocaml4.01-gsl, cubicle): Move to...
* gnu/packages/ocaml.scm: ... here.
2019-01-07 14:41:00 +01:00
b18b9d2042
gnu: octave: Fix makeinfo path configuration.
...
* gnu/packages/maths.scm (octave-cli)[arguments]: Fix makeinfo path
configuration in configure-makeinfo phase.
2019-01-05 23:49:59 +05:30
02bf685d00
Merge branch 'master' into staging
2018-12-23 23:26:04 +01:00
fa574a6d43
gnu: z3: Update to 4.8.3 and provide python3 bindings
...
* gnu/packages/maths.scm (z3): Update to 4.8.3.
[build-system]: Switch from cmake to make, and use the current
scripts/mk_make.py build script instead of the now-deprecated
contrib/cmake/bootstrap.py.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-23 22:14:15 +01:00
f30830b2e6
Merge branch 'master' into staging
2018-12-22 15:26:30 +01:00
5c0b6d1b1d
gnu: elemental: Don't use unstable tarball.
...
* gnu/packages/maths.scm (elemental)[source]: Download source using
git-fetch.
2018-12-17 12:08:06 +02:00
3b42e2be92
gnu: elemental: Fix indentation.
...
* gnu/packages/maths.scm (elemental): Fix indentation of the package
definition.
2018-12-17 12:08:06 +02:00
ad6c6a5be5
gnu: z3: Fix building on non-Intel machines.
...
* gnu/packages/maths.scm (z3)[arguments]: Add phase to remove
unnecessary include statement.
2018-12-17 12:08:06 +02:00
2d7b99b3c6
gnu: z3: Declare source-file-name.
...
* gnu/packages/maths.scm (z3)[source]: Add missing 'file-name.
2018-12-17 12:08:05 +02:00
9b405aeaa2
gnu: hypre: Replace texlive input with minimal texlive-union.
...
* gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive with minimal
texlive-union.
2018-12-14 23:32:39 +01:00
12878d12ac
Merge branch 'master' into staging
2018-12-12 22:00:52 +01:00
72f95783f1
gnu: petsc-openmpi: Ensure compatibility of SCOTCH dependency.
...
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Replace pt-scotch
with pt-scotch32 in order to prevent 'incompatible pointer' warnings
being generated in the 'build' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-10 00:28:11 +01:00
fbb7b04a85
Merge branch 'master' into staging
2018-12-09 00:18:32 +01:00
e0ae7e7374
gnu: Rename "qtoctave" to "octave".
...
* gnu/packages/maths.scm (qtoctave): Define in terms of 'deprectated-package'.
(octave): New variable, formerly known as "qtoctave".
2018-12-08 13:18:24 -05:00
5537603fbf
gnu: Rename "octave" to "octave-cli".
...
* gnu/packages/maths.scm (octave): Rename to...
(octave-cli): ...this.
[name]: Change to "octave-cli".
(qtoctave): Inherit from octave-cli.
(flann)[inputs]: Adjust accordingly.
* gnu/packages/engineering.scm (qucs)[inputs]: Likewise.
(qucs-s)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (shogun)[inputs]: Likewise.
2018-12-08 13:17:31 -05:00
16b940a079
gnu: OpenBLAS: Update to 0.3.4.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.4.
2018-12-04 20:05:21 +01:00
af5236739e
gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.
...
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi.
[arguments]: Add 'with-hypre=1' flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 10:58:50 +01:00
25ca46985c
Merge branch 'master' into core-updates
2018-11-29 15:56:49 +01:00
a5d474d798
gnu: maxima: Update to 5.42.1.
...
* gnu/packages/maths.scm (maxima): Update to 5.42.1.
2018-11-28 11:42:08 -05:00
c93b77ad37
gnu: wxmaxima: Update to 18.11.4.
...
* gnu/packages/maths.scm (wxmaxima): Update to 18.11.4.
[source]: Switch to git-fetch.
2018-11-27 22:11:48 -05:00
4d8f4a3f00
Merge branch 'master' into core-updates
2018-11-24 01:58:18 +01:00
57d30004e5
gnu: python-slepc4py: Update to 3.10.0.
...
* gnu/packages/maths.scm (python-slepc4py): Update to 3.10.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
cd3681a237
gnu: python-petsc4py: Update to 3.10.0.
...
* gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
e93da160ca
gnu: slepc: Update to 3.10.1.
...
* gnu/packages/maths.scm (slepc): Update to 3.10.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
e6951e4ee0
gnu: petsc: Update to 3.10.2
...
* gnu/packages/maths.scm (petsc): Update to 3.10.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
c491f7f8de
gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.
...
* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of
'system*'. Add 'mpi-setup' phase.
(pt-scotch32)[arguments]: Likewise.
2018-11-23 18:44:47 +01:00
4f70db97a0
Merge branch 'master' into core-updates
2018-11-20 01:14:12 +01:00
4a4f3e771b
gnu: z3: Update to 4.8.1.
...
* gnu/packages/maths.scm (z3): Update to 4.8.1.
2018-11-20 00:57:48 +01:00
fb525bfd83
gnu: z3: Fetch source using git.
...
* gnu/packages/maths.scm (z3)[source]: Change to GIT-FETCH.
2018-11-20 00:57:48 +01:00
564cf93f2a
gnu: ocaml: Update to 4.7.0.
...
Update ocaml to the latest version and fixes dependent packages by
updating them or by adding new inputs, such as ocaml-num and ocamlbuild,
that were removed from the core ocaml package. Rename packages that
cannot be built with the new compiler with an ocaml4.02 prefix. Add
ocaml4.02 dependencies.
* gnu/packages/ocaml.scm (ocaml): Update to 4.7.0.
(ocaml-4.02, ocamlbuild, camlp4-4.02, ocaml-num, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit, ocaml4.02-camlzip)
(ocaml4.02-ocamlmod, ocaml4.02-zarith, ocaml4.02-qcheck, ocaml4.02-qtest)
(ocaml4.02-stringext, ocaml4.02-bisect, dune, ocaml-migrate-parsetree)
(ocaml-ppx-tools-versioned, ocaml-ppx-tools-versioned)
(ocaml4.02-bitstring, ocaml4.02-result, ocaml4.02-topkg, ocaml4.02-rresult)
(ocaml4.02-sqlite3, ocaml4.02-csv, ocaml4.02-mtime, ocaml4.02-cmdliner)
(ocaml4.02-fmt, ocaml4.02-astring, ocaml4.02-alcotest, ocaml4.02-ppx-tools)
(ocaml4.02-react, ocaml4.02-ssl, ocaml4.02-lwt, ocaml-lwt-log)
(ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath, ocaml4.02-bos)
(ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar, ocaml4.02-uutf)
(ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64, ocaml4.02-omake)
(ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-cppo, ocaml-seq, ocaml4.02-seq)
(ocaml4.02-re, ocaml4.02-ocplib-endian, ocaml4.02-easy-format)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): New packages.
(opam): Update to 2.0.0.
(camlp4): Update to 4.07+1.
(camlp5): Update to 7.06.
(hevea): Update to 2.32.
(coq)[inputs]: Add ocaml-num.
(emacs-tuareg): Update to 2.2.0.
(ocaml-menhir)[native-inputs]: Add ocamlbuild.
(ocaml-lablgtk): Update to 2.18.6.
(unison)[inputs]: Use ocaml-4.02.
(ocaml-findlib): Update to 1.8.0.
(ocaml-ounit)[native-inputs]: Add ocamlbuild.
(ocamlmod): Update to 0.0.9.
(ocaml-frontc)[arguments]: Use ocaml-4.02.
(ocaml-qcheck)[native-inputs]: Add ocamlbuild.
(ocaml-qtest)[native-inputs]: Remove ocaml-findlib and add ocamlbuild.
(ocaml-stringext)[native-inputs]: Add ocamlbuild.
(ocaml-bisect): Update to 1.3.1.
(ocaml4.01-bisect): Downgrade to 1.3.
(ocaml-bitstring): Update to 3.1.0.
(ocaml-topkg)[native-inputs]: Add ocamlbuild.
(ocaml-rresult)[native-inputs]: Add ocamlbuild.
(ocaml-sqlite3)[native-inputs]: Add ocamlbuild.
(ocaml-csv)[native-inputs]: Add ocamlbuild.
(ocaml-mtime)[native-inputs]: Add ocamlbuild.
(ocaml-cmdliner)[native-inputs]: Add ocamlbuild.
(ocaml-fmt)[native-inputs]: Add ocamlbuild.
(ocaml-astring)[native-inputs]: Add ocamlbuild.
(ocaml-alcotest)[native-inputs]: Add ocamlbuild.
(ocaml-ppx-tools)[native-inputs]: Add ocamlbuild.
(ocaml-react)[native-inputs]: Add ocamlbuild.
(ocaml-ssl)[arguments]: Return #t in phases.
(ocaml-lwt): Update to 4.1.0.
(ocaml-logs)[native-inputs]: Add ocamlbuild.
(ocaml-fpath)[native-inputs]: Add ocamlbuild.
(ocaml-bos)[native-inputs]: Add ocamlbuild.
(ocaml-xmlm): Update to 1.3.0.
(ocaml-ulex): Update to 1.2.0.
(ocaml-uchar)[native-inputs]: Add ocamlbuild.
(ocaml-uutf): Update to 1.0.1.
(ocaml-jsonm): Update to 1.0.1.
(ocaml-ocurl): Update to 0.8.2.
(ocaml-base64)[native-inputs]: Add ocamlbuild.
(ocamlify)[native-inputs]: Use ocaml-4.02.
(omake): Update to 0.10.3.
(ocaml-batteries): Update to 2.9.0.
(ocaml-pcre)[native-inputs]: Add ocamlbuild.
(ocaml-expect): Update 0.0.6.
(ocaml4.02-fileutils): Update to 0.5.3.
(ocaml-oasis): Update 0.4.11.
(ocaml-js-build-tools)[native-inputs]: Add ocamlbuild.
(ocaml-bin-prot): Rename to ocaml4.02-bin-prot.
(ocaml-fieldslib): Rename to ocaml4.02-fieldslib.
(ocaml-ppx-core): Rename to ocaml4.02-ppx-core.
(ocaml-ppx-optcomp): Rename to ocaml4.02-ppx-optcomp.
(ocaml-ppx-driver): Rename to ocaml4.02-ppx-driver.
(ocaml-cppo): Update to 1.6.5.
(ocaml-ppx-deriving): Rename to ocaml4.02-ppx-deriving.
(ocaml-ppx-type-conv): Rename to ocaml4.02-ppx-type-conv.
(ocaml-ppx-inline-test): Rename to ocaml4.02-ppx-inline-test.
(ocaml-ppx-bench): Rename to ocaml4.02-ppx-bench.
(ocaml-ppx-compare): Rename to ocaml4.02-ppx-compare.
(ocaml-sexplib): Rename to ocaml4.02-sexplib.
(ocaml-typerep): Rename to ocaml4.02-typerep.
(ocaml-variantslib): Rename to ocaml4.02-variantslib.
(ocaml-ppx-sexp-conv): Rename to ocaml4.02-ppx-sexp-conv.
(ocaml-ppx-variants-conv): Rename to ocaml4.02-ppx-variants-conv.
(ocaml-ppx-here): Rename to ocaml4.02-ppx-here.
(ocaml-ppx-assert): Rename to ocaml4.02-ppx-assert.
(ocaml-ppx-enumerate): Rename to ocaml4.02-ppx-enumerate.
(ocaml-ppx-let): Rename to ocaml4.02-ppx-let.
(ocaml-ppx-typerep-conv): Rename to ocaml4.02-ppx-typerep-conv.
(ocaml-ppx-sexp-value): Rename to ocaml4.02-ppx-sexp-value.
(ocaml-ppx-pipebang): Rename to ocaml4.02-ppx-pipebang.
(ocaml-ppx-bin-prot): Rename to ocaml4.02-ppx-bin-prot.
(ocaml-ppx-fail): Rename to ocaml4.02-ppx-fail.
(ocaml-ppx-custom-printf): Rename to ocaml4.02-ppx-custom-printf.
(ocaml-ppx-sexp-message): Rename to ocaml4.02-ppx-sexp-message.
(ocaml-ppx-fields-conv): Rename to ocaml4.02-ppx-fields-conv.
(ocaml-re): Update to 1.8.0.
(ocaml-ppx-expect): Rename to ocaml4.02-ppx-expect.
(ocaml-ppx-jane): Rename to ocaml4.02-ppx-jane.
(ocaml-core-kernel): Rename to ocaml4.02-core-kernel.
(ocaml-async-kernel): Rename to ocaml4.02-async-kernel.
(ocaml-async-rpc-kernel): Rename to ocaml4.02-async-rpc-kernel.
(ocaml-core): Rename to ocaml4.02-core.
(ocaml-async-unix): Rename to ocaml4.02-async-unix.
(ocaml-async-extra): Rename to ocaml4.02-async-extra.
(ocaml-async): Rename to ocaml4.02-async.
(ocaml-ocplib-endian)[native-inputs]: Update to 1.0.
(ocaml-cstruct): Rename to ocaml4.02-cstruct.
(ocaml-hex): Rename to ocaml4.02-hex.
(ocaml-ezjsonm): Rename to ocaml4.02-ezjsonm.
(ocaml-uri): Rename to ocaml4.02-uri.
(optcomp): Use ocaml-4.02.
(ocaml-piqilib): Update to 0.6.14.
(ocaml-uuidm)[native-inputs]: Add ocamlbuild.
(ocaml-graph): Update to 1.8.8.
(ocaml-piqi): Update to 0.7.6.
(bap): Update to 1.3.0.
(ocaml-camomile): Update to 1.0.1.
(ocaml-jbuilder): Use ocaml-4.02.
(ocaml-lambda-term): Update to 1.13.
(ocaml-utop): Update to 2.2.0.
(ocaml-integers)[native-inputs]: Add ocamlbuild.
(ocaml-ctypes): Update to 0.14.0.
(ocaml-ocb-stubblr)[native-inputs]: Add ocamlbuild.
(ocaml-tsdl)[native-inputs]: Add ocamlbuild.
* gnu/packages/machine-learning.scm (ocaml-mcl): Use ocaml-4.02.
* gnu/packages/maths.scm (cubicle): Update to 1.1.2.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
Update patch.
* guix/build-system/ocaml.scm: (default-ocaml4.02, default-ocaml4.02-findlib)
(package-with-ocaml4.02, strip-ocaml4.02-variant): New variables.
2018-11-18 18:51:08 +01:00
1472d19abf
gnu: maxima: Fix tests on i686 and x86_64.
...
* gnu/packages/maths.scm (maxima)[arguments]: Replace check phase.
2018-11-18 11:58:38 -05:00
6b5687d053
gnu: Add python-slepc4py.
...
* gnu/packages/maths.scm (python-slepc4py): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14 21:34:08 +01:00
90ff287401
gnu: Add python-petsc4py.
...
* gnu/packages/maths.scm (python-petsc4py): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14 21:34:08 +01:00
64461ba20a
Merge branch 'master' into core-updates
2018-11-09 17:02:08 +01:00
e4b62e229e
gnu: wxmaxima: Update to 18.10.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1.
[source]: Update URL and remove patch.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-11-09 01:09:06 -05:00
55174e668f
Merge branch 'master' into core-updates
2018-11-07 21:09:57 +01:00
bb47aca5e7
gnu: Add hdf5-1.10.
...
* gnu/packages/maths.scm (hdf5-1.10): New variable.
2018-11-07 12:26:33 +01:00
f4a5faa9dc
Merge branch 'master' into core-updates
2018-11-05 23:56:22 +01:00
66044a3698
gnu: glm: Update to 0.9.9.3.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
2018-11-05 23:46:38 +01:00
39528a5ee9
gnu: r-pracma: Update to 2.1.8.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8.
[propagated-inputs]: Remove r-quadprog.
2018-10-30 21:48:10 +01:00
4795e5e177
gnu: units: Update to 2.18.
...
* gnu/packages/maths.scm (units): Update to 2.18.
2018-10-27 04:47:56 +02:00
ffddb42d6c
Merge branch 'master' into core-updates
2018-10-21 18:06:02 +02:00
82cbe4e046
gnu: maxima: Update to 5.42.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
2018-10-20 14:38:45 -04:00
d02bb02f7d
Merge branch 'master' into core-updates
2018-10-17 20:47:11 +02:00
a8fa86c477
gnu: Add python-cvxopt.
...
* gnu/packages/maths.scm (python-cvxopt, python2-cvxopt): New variables.
2018-10-11 10:30:30 +02:00
cf6db76d2a
Merge branch 'master' into core-updates
2018-10-05 19:15:39 +02:00
9e2aa70bad
gnu: petsc-openmpi: Configure with support for MUMPS solver.
...
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase
ahead of 'configure' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-10-04 18:21:17 -04:00
6a0427af6c
Merge branch 'master' into core-updates
2018-09-26 01:11:32 +02:00
116af86f14
gnu: octave: Add a search path for CURLOPT_CAPATH.
...
* gnu/packages/maths.scm (octave)[native-search-paths]: New field.
2018-09-24 21:42:12 -04:00
45201bf245
gnu: hdf5-parallel-openmpi: Really enable parallel build.
...
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set
in the file H5pubconf.h.
* gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add
the "--enable-parallel" flag to the list of configure flags. Remove
the incompatible "--enable-cxx" flag. Add 'mpi-setup' phase.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-21 17:04:37 +02:00
b0d1e60fff
gnu: hdf5: Allow for absence of utility script.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split'
phase to check for existence of h5fc script.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-21 17:04:37 +02:00
2817ac3c18
Merge branch 'master' into core-updates
2018-09-20 13:37:58 +02:00
9923d5a40f
gnu: Use INVOKE & return #t from Ruby package phases.
...
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-20 04:17:04 +02:00
4d679255da
gnu: glm: Update to 0.9.9.2.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19 15:20:21 +02:00
f03c4ec649
gnu: arpack-ng: Update to 3.6.3.
...
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
2018-09-19 15:20:21 +02:00
622ef2b90a
gnu: arpack-ng: Don't use unstable tarball.
...
* gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
2018-09-19 15:20:21 +02:00
daa6036fda
gnu: Add openblas-ilp64.
...
* gnu/packages/maths.scm (openblas-ilp64): New variable.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-14 11:23:07 +02:00
d763940711
Merge branch 'master' into core-updates
2018-09-13 13:32:39 -04:00
bbe46a4af5
mpi: Factorize openmpi setup build phase.
...
* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-09-11 20:29:04 -05:00
aa82260bc0
gnu: arpack-ng-openmpi: Fix build.
...
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add
'set-test-environment phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:29 +02:00
b38827096f
gnu: mcrl2: Use HTTPS home page.
...
* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
2018-09-10 22:54:36 +02:00
02107081da
gnu: double-conversion: Update to 3.1.0.
...
* gnu/packages/maths.scm (double-conversion): Update to 3.1.0.
2018-09-10 01:41:29 +02:00
2bdc73fb26
gnu: double-conversion: Don't use unstable tarball.
...
* gnu/packages/maths.scm (double-conversion)[source]: Use GIT-FETCH.
2018-09-10 01:41:29 +02:00
9adaf1f408
gnu: OpenBLAS: Update to 0.3.3.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.3.
2018-09-09 17:59:35 +02:00
a617fd55df
gnu: OpenBLAS: Update source URI.
...
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable
SourceForge mirror.
2018-09-09 16:43:11 +02:00
e9c1492f66
gnu: glm: Update to 0.9.9.1.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
2018-09-09 16:43:10 +02:00
3f5e6ccf9b
slepc: Upgrade to 3.9.2.
...
* gnu/packages/maths.scm (slepc): Upgrade to 3.9.2.
2018-09-05 08:10:38 -05:00
c15be1280e
petsc: Upgrade to 3.9.3.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.9.3.
[arguments]: Remove unnecessary configure flags.
2018-09-05 08:10:37 -05:00
a3a99e27bb
petsc: Move example code to "examples" output.
...
* gnu/packages/maths.scm (petsc)[arguments]: New 'move-examples' phase.
2018-09-05 08:10:37 -05:00
b26e4f26ff
gnu: Add SUNDIALS.
...
* gnu/packages/maths.scm (sundials, sundials-openmpi): New variables.
2018-09-05 08:10:31 -05:00
71ca16b58d
gnu: petsc-openmpi: Configure with support for hdf5 data format.
...
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add
hdf5-parallel-openmpi.
[arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib'
flags. Add 'set-test-environment' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-04 15:22:48 +02:00
c702749dfd
gnu: arpack-ng: Update to 3.6.2.
...
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.2.
2018-09-03 19:09:01 +02:00
91bb495b85
gnu: arpack-ng: Drop redundant phase.
...
* gnu/packages/maths.scm (arpack-ng)[arguments]: Remove.
2018-09-03 19:09:01 +02:00
220458b098
gnu: hypre: Update to 2.14.0.
...
* gnu/packages/maths.scm (hypre): Update to 2.14.0
2018-08-31 10:08:00 -05:00
e29bb27d88
gnu: r-pracma: Update to 2.1.5.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
2018-08-28 22:31:00 +02:00
a7bc1588e6
Merge branch 'staging'
2018-08-19 15:24:59 +02:00
b13ba3f1ba
gnu: gnuplot: Update to 5.2.4.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
2018-08-18 21:21:52 -04:00
7fe491fbc8
gnu: cddlib: Update to 0.94i.
...
* gnu/packages/maths.scm (cddlib): Update to 0.94i.
2018-08-18 12:04:54 -04:00
b66741edc9
gnu: octave: Update to 4.4.1.
...
* gnu/packages/maths.scm (octave): Update to 4.4.1.
(qtoctave)[source]: Remove obsolete patch.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-17 10:47:52 -04:00
f133e24481
gnu: armadillo: Update to 9.100.5.
...
* gnu/packages/maths.scm (armadillo): Update to 9.100.5.
2018-08-17 00:38:17 +02:00
df570bf271
Merge branch 'master' into staging
2018-08-16 20:56:38 +02:00
e405c0bcd9
gnu: armadillo: Update to 9.100.4.
...
* gnu/packages/maths.scm (armadillo): Update to 9.100.4.
2018-08-16 02:40:59 +02:00
df1bc82b69
gnu: ocaml-gsl: Update to 1.22.0.
...
* gnu/packages/maths.scm (ocaml-gsl): Update to 1.22.0.
2018-08-15 08:11:58 -04:00
9285f8bbae
gnu: coda: Update to 2.19.
...
* gnu/packages/maths.scm (coda): Update to 2.19.
2018-08-13 22:18:09 -04:00
869250809b
Merge branch 'master' into staging
2018-07-30 18:08:28 +02:00
f419abea22
gnu: openblas: Update to 0.3.2.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.2.
2018-07-30 15:32:10 +02:00
077d66ed42
gnu: mcrl2: Build with modular qt.
...
* gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
2018-07-29 20:00:30 +03:00
1af575f04d
Merge branch 'master' into staging
2018-07-28 18:34:59 +02:00
48d7ac175f
gnu: openlibm: Update to 0.6.0.
...
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
2018-07-28 18:12:13 +02:00
46bda5eb7a
gnu: glm: Update home page.
...
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
2018-07-28 17:56:59 +02:00
5ea4b5943d
gnu: glm: Update to 0.9.9.0.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
2018-07-28 17:55:04 +02:00
57ba8d0673
gnu: double-conversion: Update to 3.0.0.
...
* gnu/packages/maths.scm (double-conversion): Update to 3.0.0.
2018-07-22 18:23:43 +02:00
b343850ea3
gnu: double-conversion: Update home page.
...
* gnu/packages/maths.scm (double-conversion)[home-page]: Update to redirected.
2018-07-22 18:23:42 +02:00
c215fa2135
gnu: octave: Add qhull support.
...
* gnu/packages/maths.scm (octave)[inputs]: Add qhull.
2018-07-17 15:29:05 -04:00
d65f0661f3
gnu: Add qhull.
...
* gnu/packages/maths.scm (qhull): New variable.
2018-07-17 12:49:20 -04:00
19bb999a50
gnu: openblas: Update to 0.3.1.
...
* gnu/packages/patches/openblas-fix-tests-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/maths.scm (openblas): Update to 0.3.1.
[arguments, native-inputs]: Don't apply 'openblas-fix-tests-i686.patch'.
2018-07-13 12:31:49 +02:00
873325b030
Merge branch 'master' into staging
2018-07-08 23:58:22 +02:00
6104f922ee
gnu: units: Update to 2.17.
...
* gnu/packages/maths.scm (units): Update to 2.17.
2018-07-02 21:12:55 -04:00
92af3ce417
Merge branch 'master' into staging
2018-07-02 12:18:58 +02:00
7a3772b374
gnu: qtoctave: Fix build for Qt 5.11.
...
* gnu/packages/maths.scm (qtoctave)[source]: Add patch.
[native-inputs]: Add texlive.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-30 20:05:58 -04:00
0f6dc120ca
gnu: slepc: Return #t from all phases.
...
* gnu/packages/maths.scm (slepc)[arguments]: Return #t rather than
undefined from phases.
2018-06-30 03:46:20 +02:00
b414cf523b
gnu: mumps: Use INVOKE.
...
* gnu/packages/maths.scm (mumps)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-06-30 03:46:20 +02:00
e02a9975b8
gnu: superlu-dist: Return #t from all phases.
...
* gnu/packages/maths.scm (superlu-dist)[arguments]: Return #t rather
than undefined from phases. Substitute INVOKE for SYSTEM*.
2018-06-30 03:46:20 +02:00
d67a7e9e8d
gnu: scotch: Return #t from all phases.
...
* gnu/packages/maths.scm (scotch)[arguments]: Return #t rather than undefined from phases. Substitute INVOKE for SYSTEM*.
2018-06-30 03:46:19 +02:00
49fdd357a2
gnu: petsc: Return #t from phases.
...
* gnu/packages/maths.scm (petsc)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-06-30 03:46:19 +02:00
b7a46ed227
gnu: openblas: Fix build on i686.
...
* gnu/packages/patches/openblas-fix-tests-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/maths.scm (openblas)[native-inputs]: Add it.
[arguments]: Add phase to apply it on i686 systems only.
2018-06-20 16:02:04 +02:00
6969c4de44
Merge branch 'master' into staging
2018-06-18 15:29:38 +02:00
73d18915b5
gnu: OpenBLAS: Update to 0.3.0.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.0.
2018-06-18 15:27:08 +02:00
f3a34b9de8
gnu: gsl: Update to 2.5.
...
* gnu/packages/maths.scm (gsl): Update to 2.5.
2018-06-17 01:40:14 +02:00
b5edc47912
gnu: flann: Fix builds with CMake >= 3.11.
...
* gnu/packages/patches/flann-cmake-3.11.patch: New file.
* gnu/packages/maths.scm (flann)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-12 15:23:34 +02:00
fc3c88ec9c
gnu: lapack-3.5: Delete package.
...
* gnu/packages/maths.scm (lapack-3.5): Delete package.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
c0d7c1244a
Merge branch 'master' into core-updates
2018-05-29 21:20:47 -04:00
de658cc2f8
gnu: octave: Update to 4.4.0.
...
* gnu/packages/maths.scm (octave): Update to 4.4.0.
2018-05-29 18:20:37 -04:00
1640f16e78
Merge branch 'master' into core-updates
2018-05-27 01:26:09 -04:00
6df2a50ac4
gnu: openmpi: Update to 3.0.1.
...
* gnu/packages/mpi.scm (openmpi): Update to 3.0.1.
[arguments]: In 'remove-absolute' phase, adjust romio file name.
* gnu/packages/maths.scm (scalapack)[arguments]: Add
'set-test-environment' phase.
(slepc-openmpi)[arguments]: Likewise.
(mumps-openmpi)[arguments]: Likewise.
(superlu-dist)[arguments]: In 'check' phase, set
'OMPI_MCA_plm_rsh_agent'.
(scotch)[arguments]: In 'build-esmumps', likewise.
(p4est)[arguments]: Add 'set-test-environment' phase.
(hypre-openmpi)[arguments]: Likewise.
2018-05-25 13:43:03 +02:00
0921eff2a8
gnu: superlu-dist: Update to 5.3.0.
...
* gnu/packages/maths.scm (superlu-dist): Update to 5.3.0.
[source](snippet): Adapt file name and function names to new version.
Remove 'delete-file' call.
2018-05-25 13:43:03 +02:00
539bf8f2c0
Merge branch 'master' into core-updates
2018-05-17 01:00:50 -04:00
Eric Bavier