Marius Bakke
641e387ac3
gnu: xf86-input-mouse: Update to 1.9.3.
...
* gnu/packages/xorg.scm (xf86-input-mouse): Update to 1.9.3.
2018-06-19 13:37:22 +02:00
Marius Bakke
80a1dfac1c
gnu: libxaw3d: Update to 1.6.3.
...
* gnu/packages/xorg.scm (libxaw3d): Update to 1.6.3.
2018-06-19 13:37:22 +02:00
Ricardo Wurmus
951375bab3
gnu: guitarix: Update to 0.37.1.
...
* gnu/packages/audio.scm (guitarix): Update to 0.37.1.
2018-06-19 10:48:14 +02:00
Leo Famulari
bc19a68c5c
gnu: QEMU: Fix CVE-2018-11806.
...
* gnu/packages/patches/qemu-CVE-2018-11806.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2018-06-19 01:19:35 -04:00
Pierre Neidhardt
92d581a0fd
gnu: emacs-image+: Don't propagate inputs.
...
* gnu/packages/emacs.scm (emacs-image+)[propagated-inputs]: Remove imagemagick
[Inputs]: Add imagemagick
[arguments]: Substitute path to imagemagick commands
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-18 23:19:51 +02:00
Pierre Neidhardt
a749040ad7
gnu: emacs-gif-screencast: Update URL.
...
* gnu/packages/emacs.scm (emacs-gif-screencast): Update URL.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-18 23:19:51 +02:00
Ludovic Courtès
a854525a34
system: Have /run/setuid-programs first in $PATH.
...
Fixes <https://bugs.gnu.org/31814 >.
Reported by Clément Lassieur <clement@lassieur.org>.
* gnu/system.scm (operating-system-etc-service)["profile"]: Arrange so
that /run/setuid-programs comes first in $PATH.
2018-06-18 23:19:51 +02:00
Kei Kebreau
3fe43df716
gnu: schismtracker: Update to 20180523.
...
* gnu/packages/music.scm (schismtracker): Update to 20180523.
[arguments]: Use 'invoke' in the 'autoconf' phase.
2018-06-18 13:46:46 -04:00
Efraim Flashner
a181e858c7
gnu: gnu-pw-mgr: Update to 2.3.1.
...
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.3.1.
[arguments]: Add phase to patch more shebangs.
2018-06-18 20:02:39 +03:00
Leo Famulari
bfc810ca13
gnu: w3m: Update source URL.
...
* gnu/packages/w3m.scm (w3m)[source]: Update URL.
2018-06-18 12:32:22 -04:00
George Clemmer
067a113a31
gnu: emacs-graphviz-dot-mode: Update for Emacs 26.1
...
* gnu/packages/emacs.scm (emacs-graphviz-dot-mode): Update to 0.3.11 for
compatibility with Emacs 26.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-06-18 12:18:04 -04:00
Leo Famulari
f49d6909e3
gnu: restic: Update the comment about the bundled dependencies.
...
* gnu/packages/backup.scm (restic): Update the comment.
2018-06-18 12:15:27 -04:00
Leo Famulari
9f162c0ab4
gnu: OpenSSL 1.1.0: Fix CVE-2018-{0495,0732}.
...
* gnu/packages/patches/openssl-1.1.0-CVE-2018-0495.patch,
gnu/packages/patches/openssl-1.1.0-CVE-2018-0732.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/tls.scm (openssl-next)[source]: Use them.
2018-06-18 12:04:49 -04:00
Leo Famulari
b8ea0db3ae
gnu: OpenSSL 1.0.2: Fix CVE-2018-{0495,0732}.
...
* gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch,
gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl/fixed): New variable.
2018-06-18 12:04:49 -04:00
Mark H Weaver
d06352d9dc
gnu: linux-libre: Update to 4.17.2.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.2.
(%linux-libre-hash): Update hash.
2018-06-18 03:39:51 -04:00
Mark H Weaver
3b682b2ba7
gnu: linux-libre@4.14: Update to 4.14.50.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.50.
(%linux-libre-4.14-hash): Update hash.
2018-06-18 03:38:50 -04:00
Mark H Weaver
d5ce3594f6
gnu: linux-libre@4.9: Update to 4.9.109.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.109.
2018-06-18 03:38:11 -04:00
Mark H Weaver
021d6296d8
gnu: linux-libre@4.4: Update to 4.4.138.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.138.
2018-06-18 03:37:14 -04:00
Pierre Neidhardt
47de00af16
gnu: encfs: Update to 1.9.5.
...
* gnu/packages/crypto.scm (encfs): Update to 1.9.5.
[source](snippet): Adjust paths. Remove two bundled libraries.
[native-inputs]: Add googletest-source.
[arguments]: Add 'unpack-googletest' and 'make-unittests' phases.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-06-17 21:59:51 -04:00
Arun Isaac
b4eae997fe
gnu: texlive-bin: Use absolute path to ghostscript executable "gs".
...
* gnu/packages/tex.scm (texlive-bin)[arguments]: Rename fix-unix-detection
phase to configure-ghostscript-executable. Replace "gs" in epstopdf.pl with
the absolute path to "gs" in the store.
2018-06-17 21:29:07 +05:30
宋文武
33f61dc1b5
gnu: Remove Mr. Rescue.
...
It's not compatible with love-11.1.
* gnu/packages/game.scm (mrrescue): Remove variable.
2018-06-17 20:23:42 +08:00
Kei Kebreau
c5829179ca
gnu: clusterssh: Update to 4.13.2.
...
* gnu/packages/admin.scm (clusterssh): Update to 4.13.2.
[build-system]: Switch to perl-build-system.
[arguments]: Remove 'set-load-paths' phase.
[inputs]: Remove perl.
[native-inputs]: Add perl-cpan-changes, perl-file-slurp, perl-file-which,
perl-module-build, perl-readonly, perl-test-differences,
perl-test-distmanifest, perl-test-perltidy, perl-test-pod,
perl-test-pod-coverage, perl-test-trap and perltidy.
[propagated-inputs]: Add perl-exception-class, perl-try-tiny and
perl-x11-protocol-other.
2018-06-16 20:52:43 -04:00
Kei Kebreau
469e82715e
gnu: perltidy: Update to 20180220.
...
* gnu/packages/perl.scm (perltidy): Update to 20180220.
2018-06-16 20:52:43 -04:00
Kei Kebreau
0943b0b534
gnu: Add perl-test-perltidy.
...
* gnu/packages/perl-check.scm (perl-test-perltidy): New variable.
2018-06-16 20:52:37 -04:00
Kei Kebreau
32315df9c7
gnu: Add perl-file-finder.
...
* gnu/packages/perl.scm (perl-file-finder): New variable.
2018-06-16 20:42:27 -04:00
Kei Kebreau
52b1551bff
gnu: Add perl-test-distmanifest.
...
* gnu/packages/perl-check.scm (perl-test-distmanifest): New variable.
2018-06-16 20:41:16 -04:00
Kei Kebreau
048657cccd
gnu: Add perl-module-manifest.
...
* gnu/packages/perl.scm (perl-module-manifest): New variable.
2018-06-16 20:40:25 -04:00
Kei Kebreau
b2d5b00d42
gnu: Add perl-cpan-changes.
...
* gnu/packages/perl.scm (perl-cpan-changes): New variable.
2018-06-16 20:39:35 -04:00
Kei Kebreau
f82fe68f99
gnu: Add perl-x11-protocol-other.
...
* gnu/packages/xorg.scm (perl-x11-protocol-other): New variable.
2018-06-16 20:38:32 -04:00
Ludovic Courtès
f3a34b9de8
gnu: gsl: Update to 2.5.
...
* gnu/packages/maths.scm (gsl): Update to 2.5.
2018-06-17 01:40:14 +02:00
Ludovic Courtès
554eaae4a0
gnu: diffoscope: Update to 96.
...
* gnu/packages/package-management.scm (diffoscope): Update to 96.
2018-06-17 01:40:14 +02:00
Ludovic Courtès
6710206881
gnu: magit: Update to 2.13.0.
...
* gnu/packages/emacs.scm (magit): Update to 2.13.0.
2018-06-17 01:40:14 +02:00
Pierre Neidhardt
3348e9f371
gnu: emacs-fish-completion: Don't propagate inputs.
...
* gnu/packages/emacs.scm (emacs-fish-completion)[propagated-inputs]: Remove fish
[inputs]: Add fish.
[arguments]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-17 01:40:14 +02:00
Pierre Neidhardt
a14de83213
gnu: upx: Fix CVE-2017-15056.
...
* gnu/packages/patches/upx-protect-against-bad-crafted-input.patch: New file.
* gnu/packages/compression.scm (upx)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-17 01:40:13 +02:00
Marius Bakke
ed2ae0dc7f
gnu: strace: Update to 4.23.
...
* gnu/packages/linux.scm (strace): Update to 4.23.
[source]: Remove obsolete patch.
* gnu/packages/patches/strace-kernel-4.16.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-06-16 21:35:26 +02:00
Marius Bakke
4c0df1a870
gnu: offlineimap: Update to 7.2.1.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.2.1.
2018-06-16 21:35:26 +02:00
Marius Bakke
ec8cdd0ec6
gnu: maim: Update to 5.5.2.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.5.2.
2018-06-16 21:35:26 +02:00
Marius Bakke
30e26b6af3
gnu: ffmpeg: Update to 4.0.1.
...
* gnu/packages/video.scm (ffmpeg): Update to 4.0.1.
2018-06-16 21:35:25 +02:00
Marius Bakke
259341cf93
gnu: ldb: Fix build on 32-bit systems.
...
* guix/utils.scm (target-64bit?): New procedure.
* gnu/packages/samba.scm (ldb)[inputs]: Only add LMDB on 64-bit systems.
[arguments]: Make #:tests? conditional on LMDB availability.
2018-06-16 21:35:25 +02:00
Marius Bakke
406c83f78d
gnu: perl: Fix CVE-2018-12015.
...
* gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/perl.scm (perl-5.26.2)[source](patches): Use it.
2018-06-16 21:35:25 +02:00
Marius Bakke
57b1dba116
gnu: libedit: Update to 20180525-3.1.
...
* gnu/packages/libedit.scm (libedit): Update to 20180525-3.1.
2018-06-16 21:35:25 +02:00
Marius Bakke
7727f91f44
gnu: openal: Update to 0.18.2.
...
* gnu/packages/audio.scm (openal): Update to 0.18.2.
2018-06-16 21:35:25 +02:00
Marius Bakke
cdbcfc113b
gnu: linux-libre: Fix build on AArch64.
...
* gnu/packages/patches/binutils-aarch64-symbol-relocation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (binutils/fixed): New public variable.
* gnu/packages/linux.scm (make-linux-libre)[native-inputs]: On aarch64, define
new ld-wrapper with the above binutils and use it.
2018-06-16 21:35:24 +02:00
Oleg Pykhalov
f77886c1c5
gnu: Add restic.
...
* gnu/packages/backup.scm (restic): New variable.
2018-06-16 21:52:40 +03:00
Clément Lassieur
e8b3a15849
gnu: Add dehydrated.
...
* gnu/packages/tls.scm (dehydrated): New variable.
2018-06-16 20:45:56 +02:00
宋文武
806f599c5b
gnu: wesnoth: Update to 1.14.3.
...
* gnu/packages/games.scm (wesnoth): Update to 1.14.3.
2018-06-16 22:16:39 +08:00
Julien Lepiller
697a9d0d06
gnu: groovy: Add groovy-xml to the closure.
...
* gnu/packages/groovy.scm (groovy)[inputs]: Add groovy-xml.
[arguments]: Add groovy-xml to the list of classes available for class
loading.
2018-06-16 14:09:40 +02:00
Julien Lepiller
8c2c105c12
gnu: Add maven.
...
* gnu/packages/maven.scm (maven): New variable.
2018-06-16 13:18:25 +02:00
Julien Lepiller
0c1e98eb92
gnu: Add maven-compat.
...
* gnu/packages/maven.scm (maven-compat): New variable.
2018-06-16 13:18:19 +02:00
Julien Lepiller
19126bba4e
gnu: Add maven-resolver-transport-wagon.
...
* gnu/packages/maven.scm (maven-resolver-transport-wagon): New variable.
2018-06-16 13:18:17 +02:00
Julien Lepiller
aa06dd0f7d
gnu: Add maven-wagon-http.
...
* gnu/packages/maven.scm (maven-wagon-http): New variable.
2018-06-16 13:18:15 +02:00
Julien Lepiller
c3f5ec6ec7
gnu: Add maven-wagon-http-shared.
...
* gnu/packages/maven.scm (maven-wagon-http-shared): New variable.
2018-06-16 13:18:13 +02:00
Julien Lepiller
53360e488d
gnu: Add maven-wagon-tck-http.
...
* gnu/packages/maven.scm (maven-wagon-tck-http): New variable.
2018-06-16 13:18:11 +02:00
Julien Lepiller
0d1b3b39bc
gnu: Add maven-wagon-file.
...
* gnu/packages/maven.scm (maven-wagon-file): New variable.
2018-06-16 13:18:09 +02:00
Julien Lepiller
f216a9f99a
gnu: Add maven-wagon-provider-test.
...
* gnu/packages/maven.scm (maven-wagon-provider-test): New variable.
2018-06-16 13:18:07 +02:00
Julien Lepiller
ff7a0fcff3
gnu: Add maven-wagon-provider-api.
...
* gnu/packages/maven.scm (maven-wagon-provider-api): New variable.
2018-06-16 13:18:04 +02:00
Julien Lepiller
e2c7d32995
gnu: Add maven-embedder.
...
* gnu/packages/maven.scm (maven-embedder): New variable.
2018-06-16 13:18:02 +02:00
Julien Lepiller
b822544cfe
gnu: Add maven-core.
...
* gnu/packages/maven.scm (maven-core): New variable.
2018-06-16 13:18:00 +02:00
Julien Lepiller
9f25cba65a
gnu: Add java-plexus-component-metadata.
...
* gnu/packages/maven.scm (java-plexus-component-metadata): New variable.
2018-06-16 13:17:58 +02:00
Julien Lepiller
a59d5f3542
gnu: Add maven-plugin-annotations.
...
* gnu/packages/maven.scm (maven-plugin-annotations): New variable.
2018-06-16 13:17:56 +02:00
Julien Lepiller
7a42f05869
gnu: Add maven-core-bootstrap.
2018-06-16 13:17:54 +02:00
Julien Lepiller
8f5caf9366
gnu: Add maven-plugin-api.
...
* gnu/packages/maven.scm (maven-plugin-api): New variable.
2018-06-16 13:17:52 +02:00
Julien Lepiller
ab621bf142
gnu: Add java-qdox.
...
* gnu/packages/java.scm (java-qdox): New variable.
2018-06-16 13:17:50 +02:00
Julien Lepiller
7d65489ffe
gnu: Add java-plexus-cli.
...
* gnu/packages/java.scm (java-plexus-cli): New variable.
2018-06-16 13:17:48 +02:00
Julien Lepiller
087583a7db
gnu: Add java-eclipse-jetty-webapp-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-webapp-9.2): New variable.
2018-06-16 13:17:46 +02:00
Julien Lepiller
d736511864
gnu: Add java-eclipse-jetty-webapp.
...
* gnu/packages/web.scm (java-eclipse-jetty-webapp): New variable.
2018-06-16 13:17:44 +02:00
Julien Lepiller
38b57575c1
gnu. Add java-eclipse-jetty-xml-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-xml-9.2): New variable.
2018-06-16 13:17:42 +02:00
Julien Lepiller
f69a1d04a1
gnu: Add java-eclipse-jetty-xml.
...
* gnu/packages/web.scm (java-eclipse-jetty-xml): New variable.
2018-06-16 13:17:39 +02:00
Julien Lepiller
c099f6a716
gnu: java-eclipse-jetty-security-9.2: Ignore test error.
...
* gnu/packages/web.scm (java-eclipse-jetty-security-9.2)[arguments]:
Ignore one failing test.
2018-06-16 13:17:19 +02:00
Ricardo Wurmus
901bcb7815
gnu: pigx-chipseq: Update to 0.0.16.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.16.
2018-06-16 12:11:09 +02:00
Leo Famulari
12e530ba63
gnu: BIND: Fix CVE-2018-5738.
...
* gnu/packages/patches/bind-CVE-2018-5738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dns.scm (isc-bind)[source]: Use it.
2018-06-15 16:41:16 -04:00
Mark H Weaver
a7c8716928
gnu: grub: Fix build on i686.
...
Fixes <https://bugs.gnu.org/31380 >.
* gnu/packages/bootloaders.scm (grub)[native-inputs]: Add "ld-wrapper"
and "binutils".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15 16:41:52 +02:00
Danny Milosavljevic
4ce4fc5010
system: Add os-with-u-boot.
...
* gnu/system/install.scm (os-with-u-boot): New procedure.
* gnu/packages/bootloaders.scm (make-u-boot-package): Export.
* doc/guix.texi (Building the Installation Image for ARM Boards): New
subsection.
2018-06-15 14:16:37 +02:00
fis
0017e55f89
gnu: Add shadowsocks.
...
* gnu/packages/networking.scm (shadowsocks): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15 10:04:59 +02:00
Tobias Geerinckx-Rice
ad21323c96
gnu: cpuid: Update to 20180519.
...
* gnu/packages/linux.scm (cpuid): Update to 20180519.
2018-06-15 09:57:17 +02:00
Tobias Geerinckx-Rice
d41a5f826d
gnu: light: Return #t from phase.
...
* gnu/packages/linux.scm (light)[arguments]: End ‘patch-makefile’ phase
with #t.
2018-06-15 09:57:17 +02:00
Tobias Geerinckx-Rice
a756fa5ac0
gnu: light: Update to 1.1.
...
* gnu/packages/linux.scm (light): Update to 1.1.
[source]: Switch to GIT-FETCH.
2018-06-15 09:57:17 +02:00
Tobias Geerinckx-Rice
14b0c49670
gnu: f2fs-tools: Update to 1.10.0.
...
* gnu/packages/linux.scm (f2fs-tools): Update to 1.10.0.
2018-06-15 09:57:16 +02:00
Tobias Geerinckx-Rice
52d5b73fc4
gnu: spice-protocol: Update to 0.12.14.
...
* gnu/packages/spice.scm (spice-protocol): Update to 0.12.14.
2018-06-15 09:57:16 +02:00
Tobias Geerinckx-Rice
0ce92d74a2
gnu: python-pyrfc3339: Update to 1.1.
...
* gnu/packages/time.scm (python-pyrfc3339): Update to 1.1.
2018-06-15 09:57:16 +02:00
Tobias Geerinckx-Rice
5bc4188ffd
gnu: gource: Update to 0.49.
...
* gnu/packages/version-control.scm (gource): Update to 0.49.
2018-06-15 09:57:16 +02:00
Tobias Geerinckx-Rice
d21fb90a27
gnu: perl-xml-libxml-simple: Update to 0.99.
...
* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.99.
2018-06-15 09:57:16 +02:00
Tobias Geerinckx-Rice
914c6f621e
gnu: fcitx-configtool: Update to 0.4.10.
...
* gnu/packages/fcitx.scm (fcitx-configtool): Update to 0.4.10.
2018-06-15 09:57:15 +02:00
Tobias Geerinckx-Rice
50ca5fb332
gnu: fcitx: Update to 4.2.9.6.
...
* gnu/packages/fcitx.scm (fcitx): Update to 4.2.9.6.
[native-inputs]: Add extra-cmake-modules.
2018-06-15 09:57:15 +02:00
Tobias Geerinckx-Rice
657bed34f4
gnu: fcitx: Use HTTPS home page.
...
* gnu/packages/fcitx.scm (fcitx)[home-page]: Use HTTPS.
2018-06-15 09:57:15 +02:00
Tobias Geerinckx-Rice
26d66a518c
gnu: perl-xml-xpath: Update to 1.42.
...
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.42.
2018-06-15 09:57:15 +02:00
Tobias Geerinckx-Rice
9332d70602
gnu: perl-xml-xpath: Propagate inputs.
...
* gnu/packages/xml.scm (perl-xml-xpath)[inputs]: Rename this...
[propagated-inputs]: ...to this.
2018-06-15 09:57:14 +02:00
Tobias Geerinckx-Rice
50632f0a8d
gnu: perl-xml-atom: Propagate inputs.
...
* gnu/packages/xml.scm (perl-xml-atom)[inputs]: Rename to...
[propagated-inputs]: ...this, and...
[native-inputs]: ...remove duplicate packages from here.
2018-06-15 09:57:14 +02:00
Tobias Geerinckx-Rice
beb2d4be84
gnu: nickle: Update to 2.81.
...
* gnu/packages/nickle.scm (nickle): Update to 2.81.
2018-06-15 09:57:14 +02:00
Tobias Geerinckx-Rice
752ff6e9aa
gnu: r-cubature: Update to 1.4.
...
* gnu/packages/cran.scm (r-cubature): Update to 1.4.
2018-06-15 09:57:14 +02:00
Rutger Helling
abde01f27d
gnu: neofetch: Update to 4.0.2.
...
* gnu/packages/admin.scm (neofetch): Update to 4.0.2.
2018-06-15 09:18:13 +02:00
Ricardo Wurmus
cf9a29b24c
gnu: Add r-genomicinteractions.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
2018-06-15 09:14:01 +02:00
Ricardo Wurmus
a32279ffb6
gnu: Add r-interactionset.
...
* gnu/packages/bioconductor.scm (r-interactionset): New variable.
2018-06-15 09:14:01 +02:00
Rutger Helling
056402220e
gnu: innoextract: Update to 1.7.
...
* gnu/packages/compression.scm (innoextract): Update to 1.7.
2018-06-15 09:10:35 +02:00
Ricardo Wurmus
6ffdfe6a01
gnu: Add r-riboseqr.
...
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
2018-06-15 07:43:23 +02:00
Ricardo Wurmus
0490f9de88
gnu: Add r-riboprofiling.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
2018-06-15 07:43:22 +02:00
Ricardo Wurmus
609f4ad12f
gnu: Add r-chipcomp.
...
* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
2018-06-15 07:43:22 +02:00
Ricardo Wurmus
2bece692a6
gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New
variable.
2018-06-15 07:43:22 +02:00
Ricardo Wurmus
6fbd759b13
gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New
variable.
2018-06-15 07:43:22 +02:00
Ricardo Wurmus
dfac7eb917
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked):
New variable.
2018-06-15 07:43:22 +02:00
Ricardo Wurmus
bb15b581f7
gnu: Add r-bayseq.
...
* gnu/packages/bioconductor.scm (r-bayseq): New variable.
2018-06-15 07:43:22 +02:00
Leo Famulari
b494bbe466
gnu: certbot, python-acme: Update to 0.25.1.
...
* gnu/packages/tls.scm (certbot): Update 0.25.1.
(python-acme): Update to 0.25.1.
[native-inputs]: Add python-pytest.
[propagated-inputs]: Add python-requests-toolbelt.
2018-06-14 19:38:56 -04:00
Leo Famulari
9297fc61cc
gnu: Go 1.10: Update to 1.10.3.
...
* gnu/packages/golang.scm (go-1.10): Update to 1.10.3.
2018-06-14 17:49:56 -04:00
Leo Famulari
96fd9a0e62
gnu: Go 1.9: Update to 1.9.7.
...
* gnu/packages/golang.scm (go-1.9): Update to 1.9.7.
2018-06-14 17:49:53 -04:00
Ludovic Courtès
411959bef3
linux-initrd: Module check correctly handles hyphen vs. underscore.
...
Fixes <https://bugs.gnu.org/31714 >.
Reported by Vagrant Cascadian <vagrant@debian.org>
and Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Pass
LINUX-MODULES through 'normalize-module-name'.
* gnu/build/linux-modules.scm (normalize-module-name): Export.
2018-06-14 23:34:59 +02:00
Konrad Hinsen
565af91acc
gnu: emacs-racket-mode: Update and bug fix.
...
* gnu/packages/emacs.scm (emacs-racket-mode): Update and bug fix.
- Update to the current commit
- Bug fix: include Racket files in addition to Emacs Lisp files
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
Fis Trivial
a8fb82a8ab
gnu: Add vowpal-wabbit.
...
* gnu/packages/machine-learning.scm (vowpal-wabbit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
Fis Trivial
112c2c010b
gnu: Add lightgbm.
...
* gnu/packages/machine-learning.scm (lightgbm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
Ludovic Courtès
baed923682
self: Add 'guix-daemon' to the result.
...
* gnu/packages/package-management.scm (guix-daemon): New variable.
* guix/self.scm (whole-package): Add #:daemon and honor it.
(compiled-guix): Pass #:daemon to 'whole-package'.
2018-06-14 23:34:59 +02:00
Gábor Boskovits
0effadcad5
gnu: libressl: Update to 2.7.4 [fixes CVE-2018-{0495,0732}].
...
* gnu/packages/tls.scm (libressl): Update to 2.7.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-06-14 17:11:17 -04:00
Leo Famulari
e3173fe18e
gnu: botan: Update to 2.6.0 [fixes CVE-2018-{9127,9860}].
...
* gnu/packages/crypto.scm (botan): Update to 2.6.0.
2018-06-14 16:02:52 -04:00
Leo Famulari
a4bae9af00
gnu: vdirsyncer: Update to 0.6.6.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.6.6.
[arguments]: Simplify the man-page building.
2018-06-14 15:51:57 -04:00
Leo Famulari
44d1b9569b
gnu: python-click-log: Update to 0.3.2.
...
* gnu/packages/python.scm (python-click-log): Update to 0.3.2.
2018-06-14 15:51:56 -04:00
Leo Famulari
b6c675c693
gnu: GnuPG 1.4: Update to 1.4.23.
...
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.23.
[source]: Remove patch.
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-06-14 15:35:23 -04:00
Tobias Geerinckx-Rice
ef0d765605
gnu: python-freezegun: Update to 0.3.10.
...
* gnu/packages/check.scm (python-freezegun): Update to 0.3.10.
2018-06-14 18:55:52 +02:00
Tobias Geerinckx-Rice
19611b7a0a
gnu: python-freezegun: Return #t from phase.
...
* gnu/packages/check.scm (python-freezegun)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-06-14 18:55:52 +02:00
Tobias Geerinckx-Rice
d518261f05
gnu: cppcheck: Update to 1.84.
...
* gnu/packages/check.scm (cppcheck): Update to 1.84.
2018-06-14 18:55:51 +02:00
Tobias Geerinckx-Rice
6dd5f2ea63
gnu: qrencode: Update to 4.0.2.
...
* gnu/packages/aidc.scm (qrencode): Update to 4.0.2.
2018-06-14 18:55:51 +02:00
Tobias Geerinckx-Rice
f71619648c
gnu: perl-dbi: Update to 1.641.
...
* gnu/packages/databases.scm (perl-dbi): Update to 1.641.
2018-06-14 18:55:51 +02:00
Tobias Geerinckx-Rice
1ba7a62362
gnu: python-nose-timer: Update to 0.7.2.
...
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.2.
[source]: Remove patch...
* gnu/packages/patches/python-nose-timer-drop-ordereddict.patch:
...delete file...
* gnu/local.mk (dist_patch_DATA): ...and remove it.
2018-06-14 18:55:46 +02:00
Rutger Helling
ecbac51a0c
gnu: openrct2: Downgrade to 0.1.1.
...
* gnu/packages/games.scm (openrct2): Downgrade to 0.1.1 due to audio not
working on 0.1.2+. Needs fixing before upgrade.
[arguments]: Add "-DDOWNLOAD_TITLE_SEQUENCES=OFF" configure-flag. Remove
'fixgcc7 and 'get-rid-of-errors phases.
[native-inputs]: Remove gcc@7.
2018-06-14 18:14:30 +02:00
Clément Lassieur
43fa239717
gnu: emacs-password-store: Update to 1.7.2.
...
* gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.2.
[propagated-inputs]: Add emacs-with-editor.
2018-06-14 17:37:04 +02:00
Clément Lassieur
ab6f400531
gnu: password-store: Update to 1.7.2.
...
* gnu/packages/password-utils.scm (password-store): Update to 1.7.2.
[source]: Remove 'password-store-gnupg-compat.patch'.
* gnu/packages/patches/password-store-gnupg-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-06-14 17:36:59 +02:00
Ricardo Wurmus
f715f102e0
gnu: fio: Update to 3.7.
...
* gnu/packages/benchmark.scm (fio): Update to 3.7.
2018-06-14 15:41:09 +02:00
Ricardo Wurmus
53131eab2d
gnu: Add minimap2.
...
* gnu/packages/bioinformatics.scm (minimap2): New variable.
2018-06-14 13:51:15 +02:00
Ricardo Wurmus
ce573b1128
gnu: pigx-bsseq: Update to 0.0.9.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.9.
2018-06-14 12:56:49 +02:00
Ludovic Courtès
ea0a06cee2
Remove 'guix-register' and its traces.
...
* Makefile.am (SH_TESTS): Remove tests/guix-register.sh.
* build-aux/pre-inst-env.in (GUIX_REGISTER): Remove.
* gnu/build/install.scm (directives): Remove outdated comment.
* gnu/build/vm.scm (root-partition-initializer): Update comment.
* gnu/packages/package-management.scm (guix-register): Remove.
* guix/config.scm.in (%sbindir, %guix-register-program): Remove.
* guix/scripts/system.scm (install): Adjust docstring.
* guix/self.scm (make-config.scm): Remove #:guix. Do not generate
%sbindir and %guix-register-program.
(specification->package): Remove "guix".
* nix/guix-register/guix-register.cc: Remove.
* nix/libstore/store-api.cc (decodeValidPathInfo): Remove.
* nix/libstore/store-api.hh (decodeValidPathInfo): Remove declaration.
* nix/local.mk (sbin_PROGRAMS, guix_register_SOURCES)
(guix_register_CPPFLAGS, guix_register_LDFLAGS): Remove.
* tests/guix-register.sh: Remove.
2018-06-14 11:17:00 +02:00
Ludovic Courtès
eb9fe97495
database: Allow for deterministic database construction.
...
Fixes <https://bugs.gnu.org/21073 >.
* guix/store/database.scm (sqlite-register): Add #:time.
(%epoch): New variable.
(register-items): Add #:registration-time. Pass #:time to
'sqlite-register'.
* gnu/build/install.scm (register-closure): Pass #:registration-time.
2018-06-14 11:17:00 +02:00
Ludovic Courtès
078c2329c0
install: Use 'reset-timestamps' from (guix store database).
...
* gnu/build/install.scm (reset-timestamps): Remove.
* gnu/build/vm.scm: Use 'reset-timestamps' from (guix store database).
2018-06-14 11:17:00 +02:00
Ludovic Courtès
31a63be878
database: Add 'register-items'.
...
* guix/build/store-copy.scm (store-info): Export.
* guix/store/database.scm (register-items): New procedure.
(register-path): Implement in terms of 'register-items'.
* gnu/build/install.scm (register-closure): Use 'register-items' instead
of 'for-each' and 'register-path'.
2018-06-14 11:17:00 +02:00
Ludovic Courtès
c45477d2a1
install: Use (guix store database) instead of 'guix-register'.
...
* gnu/build/install.scm (register-closure): Add #:reset-timestamps? and
and #:schema; honor them. Rewrite in terms of 'register-path'.
(populate-single-profile-directory): Add #:schema and honor it. Make
/var/guix/profiles and /var/guix/gcroots.
* gnu/build/vm.scm (root-partition-initializer): Pass
#:reset-timestamps? to 'register-closure'.
* gnu/system/vm.scm (not-config?): New procedure.
(guile-sqlite3&co): New variable.
(expression->derivation-in-linux-vm)[config]: New variable.
[builder]: Use 'with-extensions'.
(iso9660-image)[schema, config]: New variables.
Wrap build expression in 'with-extensions'; add 'sql-schema' call.
Remove GUIX from INPUTS.
(qemu-image)[schema, config]: New variables.
Wrap body in 'with-extensions'.
(system-docker-image)[not-config?]: Remove.
[config]: Use 'make-config.scm'.
[schema]: New variable.
[build]: Use 'with-extensions'. Add call to 'sql-schema'. Remove GUIX
from INPUTS.
* gnu/system/file-systems.scm (%store-prefix): Check whether
'%store-prefix' is defined.
* guix/scripts/pack.scm (self-contained-tarball)[not-config?]
[libgcrypt, schema]: New variables.
[build]: Wrap in 'with-extensions'. Adjust imported module list to use
'make-config.scm' for (guix config).
2018-06-14 11:16:59 +02:00
Ludovic Courtès
be43c08b17
vm: 'expression->derivation-in-linux-vm' code can now use dlopen.
...
* gnu/system/vm.scm (expression->derivation-in-linux-vm)
[user-builder]: Define in non-monadic style as 'program-file'.
[loader]: Likewise, and 'execl' USER-BUILDER instead of loading it.
(system-docker-image): Pass BUILD as the second
argument to 'expression->derivation-in-linux-vm'.
(make-iso9660-image, qemu-image): Remove call to 'reboot'.
2018-06-14 11:16:59 +02:00
Ludovic Courtès
c5a2e1ffcb
build: Require Guile-SQLite3.
...
The next commits make (sqlite3) an indirect dependency of (gnu build
install), which is itself used by (guix scripts system), hence this new
requirement.
* configure.ac: Error out when $guix_cv_have_recent_guile_sqlite3 is
false. Remove HAVE_GUILE_SQLITE3 Automake conditional.
* Makefile.am (MODULES, SCM_TESTS): Remove HAVE_GUILE_SQLITE3 conditions.
* doc/guix.texi (Requirements): Add Guile-SQLite3.
* README: Ditto.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-SQLITE3.
[arguments]: In 'wrap-program' phase, take guile-sqlite3 into account.
2018-06-14 11:16:58 +02:00
Ludovic Courtès
6892f0a247
store-copy: 'read-reference-graph' returns a list of records.
...
The previous implementation of 'read-reference-graph' was good enough
for many use cases, but it discarded the graph structure, which is
useful information in some cases.
* guix/build/store-copy.scm (<store-info>): New record type.
(read-reference-graph): Rewrite to return a list of <store-info>.
(closure-size, populate-store): Adjust accordingly.
* gnu/services/base.scm (references-file): Adjust accordingly.
* gnu/system/vm.scm (system-docker-image): Likewise.
* guix/scripts/pack.scm (squashfs-image, docker-image): Likewise.
* tests/gexp.scm ("gexp->derivation #:references-graphs"): Likewise.
2018-06-14 11:16:58 +02:00
Efraim Flashner
03439df66f
gnu: libgcrypt: Fix CVE-2018-0495.
...
* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New package.
2018-06-14 11:06:48 +03:00
Clément Lassieur
85d79a79e4
gnu: Add python-dns-lexicon.
...
* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
2018-06-14 08:18:06 +02:00
Clément Lassieur
b863b50d80
gnu: Add python-pynamecheap.
...
* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
2018-06-14 08:18:02 +02:00
Clément Lassieur
f4adbe7405
gnu: Add python-tldextract.
...
* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
2018-06-14 08:17:59 +02:00
Clément Lassieur
0dc572380b
gnu: Add python-requests-file.
...
* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
2018-06-14 08:17:55 +02:00
Arun Isaac
40c1b61aac
gnu: Add tmate.
...
* gnu/packages/terminals.scm (tmate): New variable.
2018-06-14 11:20:31 +05:30
Tobias Geerinckx-Rice
0975ca3fd4
services: tor: Mark end of auto-generated configuration block.
...
* gnu/services/networking.scm (tor-configuration->torrc): Clearly
demarcate auto-generated lines.
2018-06-14 05:21:35 +02:00
Tobias Geerinckx-Rice
0b5c16c07f
Fix typo in (gnu packages gtk) header.
...
* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
2018-06-14 04:30:50 +02:00
Tobias Geerinckx-Rice
b262aba733
gnu: python-gnupg: Return #t from phase.
...
* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-06-14 04:02:14 +02:00
Tobias Geerinckx-Rice
ff76a1e9ca
gnu: python-gnupg: Update to 0.4.3.
...
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
2018-06-14 04:01:21 +02:00
Tobias Geerinckx-Rice
2b78360138
gnu: sssd: Update to 1.16.2.
...
* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
2018-06-14 00:52:30 +02:00
Ricardo Wurmus
844cc1c8f3
gnu: pigx-scrnaseq: Update to 0.0.5.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
2018-06-13 22:30:55 +02:00
Nicolas Goaziou
4bf474b243
gnu: emacs-orgalist: Update to 1.8.
...
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
2018-06-13 21:38:18 +02:00
Kei Kebreau
935cb931b5
gnu: emacspeak: Update to 48.0.
...
* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'. In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
2018-06-13 14:44:13 -04:00
Ricardo Wurmus
6ccd88e8cb
gnu: r-factoextra: Fix syntax error.
...
* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
2018-06-13 16:42:29 +02:00
Ricardo Wurmus
13b8dcf589
gnu: r-seurat: Update to 2.3.2.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
5b2a339e19
gnu: r-s4vectors: Update to 0.18.3.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
5b730eba3e
gnu: r-biocviews: Update to 1.48.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
c812f46817
gnu: r-rjson: Update to 0.2.20.
...
* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
242ffd6c80
gnu: r-zoo: Update to 1.8-2.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
6221de1879
gnu: r-rmarkdown: Update to 1.10.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
d086829d39
gnu: r-highr: Update to 0.7.
...
* gnu/packages/statistics.scm (r-highr): Update to 0.7.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
26a53dd957
gnu: r-stringi: Update to 1.2.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
3399dc97fc
gnu: r-munsell: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
0357db53c8
gnu: r-rgooglemaps: Update to 1.4.2.
...
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
1df9a0cf47
gnu: r-reticulate: Update to 1.8.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
fa7236f1b3
gnu: r-later: Update to 0.7.3.
...
* gnu/packages/cran.scm (r-later): Update to 0.7.3.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
36dc359186
gnu: r-radiant-data: Update to 0.9.5.
...
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
014818b691
gnu: r-cubature: Update to 1.3-13.
...
* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
8d2f8aeddf
gnu: r-extradistr: Update to 1.8.9.
...
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
1268a995da
gnu: r-statnet-common: Update to 4.1.2.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
2bce7795c1
gnu: r-stringdist: Update to 0.9.5.1.
...
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
d0396c8ea1
gnu: r-rcpproll: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
a151f1e60a
gnu: r-extremes: Update to 2.0-9.
...
* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
d87130cb2e
gnu: r-sp: Update to 1.3-1.
...
* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
5fa9be1118
gnu: r-getoptlong: Update to 0.1.7.
...
* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
7b60ab3df7
gnu: r-circlize: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
693b4d0ba5
gnu: r-globaloptions: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
846325a8d8
gnu: Add r-writexl.
...
* gnu/packages/cran.scm (r-writexl): New variable.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
546fc4aa55
gnu: Add r-hdf5r.
...
* gnu/packages/cran.scm (r-hdf5r): New variable.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus
0c9868aa5b
gnu: Add r-nbclust.
...
* gnu/packages/cran.scm (r-nbclust): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus
f22bfee945
gnu: Add r-factoextra.
...
* gnu/packages/cran.scm (r-factoextra): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus
e83841a296
gnu: Add r-factominer.
...
* gnu/packages/cran.scm (r-factominer): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus
cbf6017d83
gnu: Add r-flashclust.
...
* gnu/packages/cran.scm (r-flashclust): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus
141e43bd4e
gnu: Add r-ellipse.
...
* gnu/packages/cran.scm (r-ellipse): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus
5cbaaee83f
gnu: Add r-ggpubr.
...
* gnu/packages/cran.scm (r-ggpubr): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus
5219c5c585
gnu: Add r-ggsignif.
...
* gnu/packages/cran.scm (r-ggsignif): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus
85df1a8631
gnu: Add r-ggsci.
...
* gnu/packages/cran.scm (r-ggsci): New variable.
2018-06-13 11:51:28 +02:00
Rutger Helling
0c6ade0be6
gnu: openrct2: Update to 0.2.0.
...
* gnu/packages/games.scm (openrct2-title-sequences): New variable.
* gnu/packages/games.scm (openrct2-objects): New variable.
* gnu/packages/games.scm (openrct2): Update to 0.2.0.
[arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and
'get-rid-of-errors.
[inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences.
[native-inputs]: Add gcc@7.
2018-06-13 11:33:03 +02:00
Clément Lassieur
c24b15472b
tests: Honor the return value of 'start-service'.
...
Since commit dc7b3e5633
, 'start-service' returns
the Shepherd's representation of the service as a sexp, and '#f' if the
service fails to start. Also, it doesn't throw an exception when the service
fails to start, so relying on an exception instead of relying on its return
value is a false positive.
* gnu/tests/base.scm (run-nss-mdns-test): Split tests so to check the return
value of 'start-service'.
(run-mcron-test, run-nss-mdns-test): Use 'test-assert' with the return value
of 'start-service'.
* gnu/tests/admin.scm (run-tailon-test): Idem.
* gnu/tests/dict.scm (run-dicod-test): Idem.
* gnu/tests/mail.scm (run-opensmtpd-test, run-exim-test, run-dovecot-test):
Idem.
* gnu/tests/messaging.scm (run-xmpp-test, run-bitlbee-test): Idem.
* gnu/tests/nfs.scm (run-nfs-test): Idem.
* gnu/tests/rsync.scm (run-rsync-test): Idem.
* gnu/tests/ssh.scm (run-ssh-test): Idem.
* gnu/tests/version-control.scm (run-cgit-test, run-git-http-test): Idem.
* gnu/tests/web.scm (run-php-fpm-test): Idem.
2018-06-13 09:11:45 +02:00
Rutger Helling
14618a1ebb
gnu: vkquake: Update to 1.00.0.
...
* gnu/packages/games.scm (vkquake): Update to 1.00.0.
2018-06-13 08:47:14 +02:00
Rutger Helling
4b3480d62f
gnu: cheese: Update to 3.28.0.
...
* gnu/packages/gnome.scm (cheese): Update to 3.28.0.
2018-06-13 08:44:02 +02:00
Leo Famulari
3a30ae05ae
gnu: openimageio: Update to 1.7.19.
...
* gnu/packages/graphics.scm (openimageio): Update to 1.7.19.
2018-06-13 00:31:58 -04:00
Tobias Geerinckx-Rice
502a822dfd
gnu: tor: Update to 0.3.3.7.
...
* gnu/packages/tor.scm (tor): Update to 0.3.3.7.
2018-06-12 22:59:29 +02:00
Hartmut Goebel
b5792b9cb8
gnu: Add qtwebglplugin.
...
* gnu/packages/qt.scm (qtwebglplugin): New variable.
Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-12 22:47:01 +02:00
Hartmut Goebel
359e30c9ea
gnu: Add qtwebview.
...
* gnu/packages/qt.scm (qtwebview): New variable.
2018-06-12 22:47:01 +02:00
Christopher Baines
25e071ead9
services: nginx: Support extra content in the http block.
...
This helpful when adding content to the nginx configuration file, which isn't
supported by the record type used for the configuration. For example, like
adding proxy_cache_path configuration.
* gnu/packages/web.scm (<nginx-configuration>): Add new extra-content field.
(nginx-configuration-extra-content): New field accessor.
(default-nginx-config): Add support for the extra-content field.
* doc/guix.texi (NGINX): Document the new extra-content field.
2018-06-12 21:18:10 +01:00
Leo Famulari
bea07c7f55
gnu: python-llfuse: Update to 1.3.3.
...
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
2018-06-12 15:30:30 -04:00
Jan Nieuwenhuizen
67cb662a31
gnu: mes: Update to 0.15.
...
* gnu/packages/mes.scm (mes): Update to 0.15.
2018-06-12 19:21:10 +02:00
Efraim Flashner
6921e95ae8
gnu: mame: Fix renaming executable.
...
* gnu/packages/emulators.scm (mame)[arguments]: Only rename 'mame64' to
'mame' when 'mame64' exists.
2018-06-12 19:08:47 +03:00
Mathieu Othacehe
a9e7d6564b
gnu: multipath-tools: Fix build.
...
(multipath-tools)[arguments]: Pass -n to gzip to avoid timestamp related
warnings causing build failures.
2018-06-12 16:13:16 +02:00
Ludovic Courtès
8d09bfe218
system: Move ~/.config/guix/current first in PATH and INFOPATH.
...
Fixes <https://bugs.gnu.org/31770 >.
Reported by iyzsong@member.fsf.org (宋文武).
* gnu/system.scm (operating-system-etc-service)["profile"]: Arrange so
that ~/.config/guix/current comes first in PATH and INFOPATH.
2018-06-12 15:23:34 +02:00
Ludovic Courtès
90977eb55e
gnu: guile-bytestructures: Update to 1.0.3.
...
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.3.
(guile-git)[arguments]: Remove. The workaround for
<https://github.com/TaylanUB/scheme-bytestructures/issues/30 > is no
longer needed.
2018-06-12 15:23:34 +02:00
Ludovic Courtès
b5edc47912
gnu: flann: Fix builds with CMake >= 3.11.
...
* gnu/packages/patches/flann-cmake-3.11.patch: New file.
* gnu/packages/maths.scm (flann)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-12 15:23:34 +02:00
宋文武
feed5194b1
gnu: python-urwid, python2-urwid: Update to 2.0.1.
...
* gnu/packages/python.scm (python-urwid, python2-urwird): Update to 2.0.1.
2018-06-12 20:51:32 +08:00
Leo Famulari
66266d3290
gnu: borg: Update to 1.1.6.
...
* gnu/packages/backup.scm (borg): Update to 1.1.6.
[arguments]: Remove the 'adjust-msgpack-dependency' phase because it has been
adopted upstream.
2018-06-12 08:28:21 -04:00
Ben Sturmfels
e68e4a906f
gnu: fabric: Disable problematic tests.
...
Reported by Ricardo Wurmus <rekado@elephly.net> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=26647#8 >.
* gnu/packages/admin.scm (fabric): Add custom check phase to disable two tests.
2018-06-12 19:47:12 +08:00
宋文武
7714a06943
gnu: Add skopeo.
...
* gnu/packages/virtualization.scm (skopeo): New variable.
2018-06-12 19:31:18 +08:00
宋文武
efdaf8def0
gnu: Add umoci.
...
* gnu/packages/virtualization.scm (umoci): New variable.
2018-06-12 19:30:52 +08:00
宋文武
3d39130926
gnu: Add libostree.
...
* gnu/packages/package-management.scm (libostree): New variable.
2018-06-12 19:28:18 +08:00
Efraim Flashner
c71cc133ec
gnu: vim-syntastic: Update to 3.9.0.
...
* gnu/packages/vim.scm (vim-syntastic): Update to 3.9.0.
[source]: Switch to git checkout.
2018-06-12 11:16:06 +03:00
Efraim Flashner
261348e20d
gnu: vim-fugitive: Update to 2.3.
...
* gnu/packages/vim.scm (vim-fugitive): Update to 2.3.
2018-06-12 11:16:06 +03:00
Efraim Flashner
35a7e5742f
gnu: vim-airline: Update to 0.9.
...
* gnu/packages/vim.scm (vim-airline): Update to 0.9.
[source]: Switch to git checkout.
2018-06-12 11:16:05 +03:00
Efraim Flashner
b37404740e
gnu: speedtest-cli: Update to 2.0.2.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 2.0.2.
[source]: Switch to a git checkout.
2018-06-12 11:16:05 +03:00
Efraim Flashner
5b47ea9462
gnu: font-gnu-unifont: Update to 11.0.01.
...
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.01.
2018-06-12 11:16:02 +03:00
Rutger Helling
14cb7966ba
gnu: wine-staging: Update to 3.10.
...
* gnu/packages/wine.scm (wine-staging): Update to 3.10.
2018-06-12 10:15:03 +02:00
Rutger Helling
32872458a6
gnu: wine-staging-patchset-data: Update to 3.10.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.10.
2018-06-12 10:15:03 +02:00
Mark H Weaver
95d9d95a04
gnu: linux-libre: Update to 4.17.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.1.
(%linux-libre-hash): Update hash.
2018-06-12 02:57:20 -04:00
Mark H Weaver
f3ad05efd9
gnu: linux-libre@4.14: Update to 4.14.49.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.49.
(%linux-libre-4.14-hash): Update hash.
2018-06-12 02:56:19 -04:00
Christopher Baines
2c5f8aad92
gnu: Add emacs-puppet-mode.
...
* gnu/packages/emacs.scm (emacs-puppet-mode): New variable.
2018-06-12 07:49:42 +01:00
Christopher Baines
e7a25d2ae7
gnu: elixir: Enable more tests and remove patch.
...
Previously, due to issues in the erlang package, many tests would fail, and
the package would also nondeterministically fail to build. This is now
fixed (by patching occurrences of /bin/sh in the erlang package), so all the
tests can be run.
* gnu/packages/elixir.scm (elixir)[source]: Remove patches.
[arguments]: Remove the fix-or-disable-tests phase. Add a new set-home phase
to set the HOME environment variable prior to running the tests.
* gnu/packages/patches/elixir-disable-failing-tests.patch: Delete this file.
* gnu/local.mk: Remove now deleted patch.
2018-06-12 07:46:18 +01:00
Christopher Baines
b5453aa7c3
gnu: erlang: Patch occurrences of /bin/sh in the source.
...
Previously, the elixir package would often fail to build, as running :os:cmd
would fail, as /bin/sh doesn't exist when building the elixir package. These
changes fix that issue.
* gnu/packages/erlang.scm (erlang)[arguments]: Add new patch-/bin/sh phase to
replace hardcoded references to /bin/sh with a file in the store.
2018-06-12 07:44:05 +01:00
Christopher Baines
9b25e1d124
gnu: erlang: Delete the bootstrap phase.
...
This fails for the erlang package, as the gnu build system attempts to execute
the bootstrap directory.
* gnu/packages/erlang.scm (erlang)[arguments]: Delete the bootstrap phase.
2018-06-12 07:43:59 +01:00
Marius Bakke
6321ce42ab
gnu: xf86-video-vmware: Update to 13.3.0.
...
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.3.0.
2018-06-11 23:23:10 +02:00
Marius Bakke
4276b0dc1e
gnu: xf86-input-evdev: Update to 2.10.6.
...
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.6.
2018-06-11 23:15:36 +02:00
Marius Bakke
7b7e30ca29
gnu: xf86-input-synaptics: Update to 1.9.1.
...
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.1.
2018-06-11 23:13:26 +02:00
Marius Bakke
8cfcb6ba2a
gnu: xf86-video-fbdev: Update to 0.5.0.
...
* gnu/packages/xorg.scm (xf86-video-fbdev): Update to 0.5.0.
2018-06-11 23:10:04 +02:00
Ludovic Courtès
b19950a184
system: Default .bashrc now sources /etc/bashrc.
...
This is a followup to commit 1382bde93c
,
which disabled automatic sourcing of /etc/bashrc by interactive shell.
The noticeable effect of the change would be that Bash completion would
only work in login shells.
* gnu/system/shadow.scm (default-skeletons)["bashrc"]: Source
/etc/bashrc.
2018-06-11 18:23:24 +02:00
Ludovic Courtès
b63f6c0192
gnu: python2: Deprecate "python@2".
...
* gnu/packages/python.scm (python2-called-python): New variable.
2018-06-11 18:23:24 +02:00
Rutger Helling
4d65c1c304
gnu: wine-staging: Add vkd3d support.
...
* gnu/packages/wine.scm (wine-staging)[inputs]: Add vkd3d.
2018-06-11 18:22:10 +02:00
Rutger Helling
85c7f29a25
gnu: Add vkd3d.
...
* gnu/packages/vulkan.scm (vkd3d): New variable.
2018-06-11 18:22:10 +02:00
Rutger Helling
7f54065487
gnu: shaderc: Update to be8e087.
...
* gnu/packages/vulkan.scm (shaderc): Update to be8e087.
[arguments]: Enable tests.
[inputs]: Add googletest.
2018-06-11 18:22:10 +02:00
Rutger Helling
fcfef82592
gnu: glslang: Update to 32d3ec3.
...
* gnu/packages/vulkan.scm (glslang): Update to 32d3ec3.
2018-06-11 18:22:10 +02:00
Rutger Helling
ba10e0b8e1
gnu: spirv-tools: Update to fe2fbee.
...
* gnu/packages/vulkan.scm (spirv-tools): Update to fe2fbee.
[arguments]: Disable tests. Remove "-DCMAKE_INSTALL_LIBDIR" configure-flag.
2018-06-11 18:22:10 +02:00
Rutger Helling
c7c86de669
gnu: spirv-headers: Update to 3ce3e49.
...
* gnu/packages/vulkan.scm (spirv-headers): Update to 3ce3e49. Use INVOKE.
2018-06-11 18:22:10 +02:00
Efraim Flashner
6da97043ea
gnu: Add ovmf-arm.
...
* gnu/packages/firmware.scm (ovmf-arm): New variable.
2018-06-11 19:16:23 +03:00
Efraim Flashner
cb97be5f83
gnu: Add ovmf-aarch64.
...
* gnu/packages/firmware.scm (ovmf-aarch64): New variable.
2018-06-11 19:16:23 +03:00
Marius Bakke
ff3fd83969
gnu: libraw: Update to 0.18.12 [security fixes].
...
* gnu/packages/photo.scm (libraw): Update to 0.18.12.
2018-06-11 18:08:21 +02:00
Marius Bakke
9526d86141
gnu: libndp: Update to 1.7.
...
* gnu/packages/networking.scm (libndp): Update to 1.7.
2018-06-11 18:05:54 +02:00
Marius Bakke
f24cfb6cc3
gnu: webkitgtk: Update to 2.20.3 [security fixes].
...
Fixes CVE-2018-4190, CVE-2018-4199, CVE-2018-4218, CVE-2018-4222,
CVE-2018-4232, CVE-2018-4233, CVE-2018-4246 and CVE-2018-11646.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.3.
2018-06-11 17:56:56 +02:00
Marius Bakke
6e5a6e641a
gnu: efivar: Update to 36.
...
* gnu/packages/linux.scm (efivar): Update to 36.
2018-06-11 17:54:31 +02:00
Marius Bakke
21a21c20da
gnu: ldb: Delete bundled libraries from the source.
...
* gnu/packages/samba.scm (ldb)[source](snippet): New field.
2018-06-11 17:54:30 +02:00
Marius Bakke
4ee30d6aa2
gnu: ldb: Update to 1.4.0.
...
* gnu/packages/samba.scm (ldb): Update to 1.4.0.
[inputs]: Add LMDB.
2018-06-11 17:54:30 +02:00
Pierre Neidhardt
8bf7f741e9
gnu: Add Add emacs-wgrep-helm.
...
* gnu/packages/emacs.scm (emacs-wgrep-helm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
50a1f9264d
gnu: Add emacs-package-lint.
...
* gnu/packages/emacs.scm (emacs-package-lint): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
00f3774067
gnu: Add emacs-image+.
...
* gnu/packages/emacs.scm (emacs-image+): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
bdfebc4b74
gnu: Add emacs-helm-pass.
...
* gnu/packages/emacs.scm (emacs-helm-pass): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
2f3aa1d309
gnu: Add emacs-helm-mu.
...
* gnu/packages/emacs.scm (emacs-helm-mu): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
1e75852629
gnu: Add emacs-helm-ls-git.
...
* gnu/packages/emacs.scm (emacs-helm-ls-git): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Rouby Pierre-Antoine
76a2b27897
gnu: Add go-github-com-spf13-pflag.
...
* gnu/packages/golang.scm (go-github-com-spf13-pflag): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine
bcb2179085
gnu: Add go-github-com-jonboulle-clockwork.
...
* gnu/packages/golang.scm (go-github-com-jonboulle-clockwork): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine
e8cdf560b0
gnu: Add go-github-com-gorilla-mux.
...
* gnu/packages/golang.scm (go-github-com-gorilla-mux): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Tobias Geerinckx-Rice
14299d21f2
gnu: iproute2: Update to 4.17.0.
...
* gnu/packages/linux.scm (iproute): Update to 4.17.0.
2018-06-11 14:08:31 +02:00
Tobias Geerinckx-Rice
41ea698a4b
gnu: libfilezilla: Update to 0.12.3.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.3.
2018-06-11 14:08:24 +02:00
Oleg Pykhalov
e0cc7f669b
gnu: emacs-emacsql: Replace mysql with mariadb input.
...
* gnu/packages/emacs.scm (emacs-emacsql)[inputs]: Replace 'mysql' with
'mariadb'.
2018-06-11 11:47:50 +03:00
Ludovic Courtès
8b3aea9d9e
gnu: guix: Update to 77a1aac
.
...
* gnu/packages/package-management.scm (guix): Update to 77a1aac
.
2018-06-10 23:32:00 +02:00