6acdff5875
gnu: r-rsamtools: Update to 1.26.2.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.2.
2017-04-09 13:34:53 +02:00
dc8ebe43af
gnu: r-biocparallel: Update to 1.8.2.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.2.
2017-04-09 13:34:53 +02:00
3420ed32d8
gnu: r-jsonlite: Update to 1.4.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.4.
2017-04-09 13:34:52 +02:00
c8ce351afc
gnu: linux-libre: Update to 4.10.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.9.
(%linux-libre-hash): Update hash.
2017-04-09 06:01:31 -04:00
0ab8ff138c
gnu: linux-libre@4.9: Update to 4.9.21.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.21.
2017-04-09 06:00:47 -04:00
3ca1c5e2ec
gnu: linux-libre@4.4: Update to 4.4.60.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.60.
2017-04-09 06:00:00 -04:00
482cd367c6
Revert "gnu: Add python-openid."
...
This reverts commit ccda568866
2017-04-09 03:50:40 -04:00
f3cf25c3c2
gnu: torsocks: Patch references to 'getcap' and 'which'.
...
* gnu/packages/tor.scm (torsocks)[inputs,arguments]: New fields.
2017-04-08 22:20:06 -05:00
a3c57693e4
gnu: qjackctl: Build with modular Qt.
...
* gnu/packages/audio.scm (qjackctl)[source]: Use sourceforge mirror.
[inputs]: Remove qt, add qtbase, qtx11extras.
2017-04-09 05:31:39 +03:00
dde5831c00
gnu: leafpad: Fix home-page URL.
...
* gnu/packages/text-editors.scm (leafpad)[home-page]: Fix URL.
2017-04-08 21:33:59 -04:00
0bf11648fc
gnu: Add leafpad.
...
* gnu/packages/text-editors.scm (leafpad): New variable.
2017-04-08 21:30:26 -04:00
ea240de4af
screen: Fix info page build failure.
...
* gnu/packages/patches/screen-fix-info-syntax-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/screen.scm (screen)[source]: Use it.
2017-04-08 15:53:00 -04:00
b496bfea41
gnu: lz4: Update to 1.7.5.
...
* gnu/packages/compression.scm (lz4): Update to 1.7.5.
[source]: Update source URL. Use patch 'lz4-fix-test-failures.patch'.
[home-page]: Update URL.
* gnu/packages/patches/lz4-fix-test-failures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-04-08 15:36:53 -04:00
b0eb2af2e6
gnu: Add alpine.
...
* gnu/packages/mail.scm (alpine): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-08 13:46:58 -04:00
f26d6e4e9c
gnu: certbot: Share python-acme's arguments.
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* gnu/packages/tls.scm (certbot)[arguments]: Use substitute-keyword-arguments to
inherit from python-acme.
2017-04-08 13:24:36 -04:00
f0e9fda6be
gnu: certbot, python-acme: Update to 0.13.0.
...
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.13.0.
[arguments]: Add 'patch-dependency' phase.
2017-04-08 13:24:31 -04:00
99a8c8bd7d
gnu: python-django-mailman3: Balance parentheses for inputs.
...
* gnu/packages/mail.scm (python-django-mailman3)[inputs]: Balance them.
2017-04-08 12:56:53 -04:00
d99a2add28
gnu: Add postorius.
...
* gnu/packages/mail.scm (postorius): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-08 12:40:28 -04:00
8a3741e61b
gnu: Add python-django-mailman3.
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* gnu/packages/mail.scm (python-django-mailman3): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-08 12:40:23 -04:00
14d8f6538f
gnu: Add python-django-gravatar2.
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* gnu/packages/django.scm (python-django-gravatar2): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-08 12:40:20 -04:00
e1f06e1192
gnu: Add python-django-allauth.
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* gnu/packages/django.scm (python-django-allauth): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-08 12:40:16 -04:00
ccda568866
gnu: Add python-openid.
...
* gnu/packages/python.scm (python-openid): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-08 12:40:11 -04:00
d2b51c08fd
gnu: Add python-defusedxml.
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* gnu/packages/xml.scm (python-defusedxml): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-08 12:40:06 -04:00
72fa66674d
gnu: Add you-get.
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* gnu/packages/video.scm (you-get): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 15:32:23 +02:00
181170c6ee
gnu: octave: Build with gl2ps support.
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* gnu/packages/maths.scm (octave)[inputs]: Add gl2ps.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 15:24:37 +02:00
725d8d2c08
gnu: Add gl2ps.
...
* gnu/packages/gl.scm (gl2ps): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 15:23:41 +02:00
1d65b5379b
gnu: r-vegan: Update to 2.4-3.
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* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-3.
[arguments]: Remove build phase "revert-test-deletion".
[native-inputs]: Remove "r-vegan-delete-tests-patch".
2017-04-08 10:25:50 +02:00
1c8ee3fcc2
gnu: r-stringi: Update to 1.1.5.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.5.
2017-04-08 10:25:50 +02:00
4653341b23
gnu: khal: Update to 0.9.5.
...
* gnu/packages/calendar.scm (khal): Update to 0.9.5.
2017-04-07 22:04:51 -04:00
cf47a8a51d
gnu: dovecot-trees: Update to 2.1.0.
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* gnu/packages/mail.scm (dovecot-trees): Update to 2.1.0.
(source): Change to use 'url-fetch'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-07 23:30:38 +02:00
d10fa5c7ff
gnu: Add intel-gpu-tools.
...
* gnu/packages/admin.scm (intel-gpu-tools): New variable.
2017-04-07 23:00:53 +02:00
d71b758f3a
gnu: emacs-symon: Update to 20160630.
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* gnu/packagages/emacs.scm (emacs-symon): Update to 20160630 (this is
the latest tag available from the upstream).
[source]: Use github instead of melpa.
[home-page]: Update.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-04-07 20:22:29 +03:00
350cfccb06
gnu: Add emacs-adaptive-wrap.
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Suggested-by Ivan Vilata i Balaguer <ivan@selidor.net>.
Fixes <https://bugs.gnu.org/26367 >.
* gnu/packages/emacs.scm (emacs-adaptive-wrap): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-04-07 20:22:29 +03:00
b0dd3436ed
gnu: emacs-debbugs: Update to 0.14.
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* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.14.
2017-04-07 20:22:29 +03:00
b25d3bd973
gnu: perf: Add support for C++ symbol demangling.
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* gnu/packages/linux.scm (perf)[inputs]: Add libiberty.
2017-04-07 17:37:46 +02:00
f214d470d7
gnu: ratpoison: Update to 1.4.9.
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* gnu/packages/ratpoison.scm (ratpoison): Update to 1.4.9.
[inputs]: Remove libxinerama. Add libxrandr.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-04-07 10:01:54 -04:00
6cfb860a7a
gnu: guitarix: Disable webkit features.
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The only version of webkit supported by guitarix is unmaintained and contains a
large number of security vulnerabilities, and should be removed from Guix.
* gnu/packages/audio.scm (guitarix)[inputs]: Remove webkitgtk/gtk+-2.
2017-04-07 09:37:14 -04:00
d5a3e8f019
gnu: myrepos: Use 'modify-phases' syntax.
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* gnu/packages/version-control.scm (myrepos)[arguments]: Use
'modify-phases' syntax.
2017-04-07 16:16:14 +03:00
d46e9fcb2c
gnu: myrepos: Update to 1.20170129.
...
* gnu/packages/version-control.scm (myrepos): Update to 1.20170129.
[source]: Source tarballs have been removed from Github, use
git-download to download from upstream repository.
[home-page]: Use https.
2017-04-07 16:16:13 +03:00
ecc39b3f55
gnu: gnubik: Update to 2.4.3.
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* gnu/packages/games.scm (gnubik): Update to 2.4.3.
2017-04-07 16:16:13 +03:00
37982693ca
gnu: vsearch: Update to 2.4.3.
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* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.3.
2017-04-07 21:35:07 +10:00
fbd6fb1a9d
gnu: qemu: Update to 2.8.1 [security fixes].
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Fixes CVE-2016-{9602,9603} and CVE-2017-{2615,2620,2630,5667,5931}.
* gnu/packages/qemu.scm (qemu): Update to 2.8.1.
* gnu/packages/patches/qemu-CVE-2017-2615.patch,
gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch,
gnu/packages/patches/qemu-CVE-2017-5667.patch,
gnu/packages/patches/qemu-CVE-2017-5931.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-04-07 00:53:02 -04:00
0715c0e69c
gnu: surf: Update to 2.0.
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* gnu/packages/suckless.scm (surf): Update to 2.0.
[inputs]: Replace webkitgtk/gtk+-2 with webkitgtk.
2017-04-06 22:44:07 -04:00
6b6aca9b36
gnu: flann: Move .mex file to a separate "octave" output.
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That way the closure of flann:out is down from 1 GiB
to 290 MiB.
* gnu/packages/maths.scm (flann)[outputs]: New field.
[arguments]: Add 'set-octave-directory' phase.
2017-04-07 00:17:16 +02:00
3be437398e
gnu: webkitgtk: Update to 2.16.1.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.1.
2017-04-06 17:24:57 -04:00
fe418cc5b2
gnu: armadillo: Change license to ASL 2.0.
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Armadillo versions 7.800 and onwards are licensed under the Apache License
2.0.
* gnu/packages/maths.scm (armadillo)[license]: Change to ASL 2.0.
2017-04-06 15:42:18 +02:00
2aa78c8f04
gnu: re2: Update to 2017-04-01.
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* gnu/packages/regex.scm (re2): Update to 2017-04-01.
2017-04-06 15:07:55 +02:00
fdcc9163d5
gnu: feh: Update to 2.18.3.
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* gnu/packages/image-viewers.scm (feh): Update to 2.18.3.
2017-04-06 15:05:40 +02:00
2c273a82f3
gnu: libusb: Update to 1.0.21.
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* gnu/packages/libusb.scm (libusb): Update to 1.0.21.
[home-page]: Update to new URL.
2017-04-06 15:03:07 +02:00
05b662663d
gnu: libmtp: Update to 1.1.13 [security fixes].
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* gnu/packages/libusb.scm (libmtp): Update to 1.1.13.
2017-04-06 14:58:05 +02:00
c9dccf7917
gnu: r-sourcetools: Update to 0.1.6.
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* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.6.
2017-04-06 14:39:23 +02:00
e18c731ba0
gnu: r-seqinr: Update to 3.3-6.
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* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-6.
2017-04-06 14:39:22 +02:00
498d2553ed
gnu: Remove armadillo-for-rcpparmadillo.
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This package is no longer useful, because upstream does not keep the tarballs
of older releases. We use the bundled armadillo sources in the
r-rccparmadillo package instead.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
2017-04-06 14:39:22 +02:00
0685fe3c86
gnu: r-rcpparmadillo: Update to 0.7.700.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
2017-04-06 14:39:22 +02:00
133cba8cb5
gnu: armadillo: Update to 7.800.2.
...
* gnu/packages/maths.scm (armadillo): Update to 7.800.2.
2017-04-06 14:39:22 +02:00
a3656b11d2
gnu: r-annotationforge: Update to 1.16.1.
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* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.1.
2017-04-06 14:39:22 +02:00
e0d7b31820
gnu: r-shortread: Update to 1.32.1.
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* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.1.
2017-04-06 14:39:21 +02:00
2cea968e41
gnu: r-s4vectors: Update to 0.12.2.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.2.
2017-04-06 14:39:21 +02:00
7d05eb2dcc
gnu: r-iranges: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.2.
2017-04-06 14:39:21 +02:00
e89cf15091
gnu: r-variantannotation: Update to 1.20.3.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.3.
2017-04-06 14:39:21 +02:00
3506a62762
gnu: r-limma: Update to 3.30.13.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.13.
2017-04-06 14:39:21 +02:00
4cd4721dbb
gnu: r-genomicranges: Update to 1.26.4.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.4.
2017-04-06 14:39:20 +02:00
69b356efce
gnu: r-annotationdbi: Update to 1.36.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.2.
2017-04-06 14:39:20 +02:00
5cc3b7a548
gnu: r-genomicalignments: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.10.1.
2017-04-06 14:39:20 +02:00
25d8854723
gnu: r-rtracklayer: Update to 1.34.2.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.2.
2017-04-06 14:39:20 +02:00
9ce6cb082e
gnu: r-genomicfeatures: Update to 1.26.4.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.4.
2017-04-06 14:39:20 +02:00
57ac1d2f03
gnu: r-seqminer: Update to 5.7.
...
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 5.7.
2017-04-06 14:39:19 +02:00
e8bec95e69
gnu: r-maldiquant: Update to 1.16.2.
...
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.2.
2017-04-06 14:39:19 +02:00
20e97759bf
gnu: r-ranger: Update to 0.7.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.7.0.
2017-04-06 14:39:19 +02:00
da2260f96c
gnu: r-pbkrtest: Update to 0.4-7.
...
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.4-7.
2017-04-06 14:39:19 +02:00
4328bad2cd
gnu: r-rcppeigen: Update to 0.3.2.9.1.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.2.9.1.
2017-04-06 14:39:19 +02:00
a977576780
gnu: r-mclust: Update to 5.2.3.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.2.3.
2017-04-06 14:39:18 +02:00
0007e645d9
gnu: r-ggthemes: Update to 3.4.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.0.
2017-04-06 14:39:18 +02:00
47f37fd169
gnu: r-statmod: Update to 1.4.29.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.29.
2017-04-06 14:39:18 +02:00
4c7ab0309a
gnu: r-vipor: Update to 0.4.5.
...
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.5.
2017-04-06 14:39:18 +02:00
2fe41e0fad
gnu: r-pracma: Update to 2.0.4.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
2017-04-06 14:39:18 +02:00
2f44ef97a5
gnu: r-mixtools: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0.
[propagated-inputs]: Remove "r-boot", add "r-survival".
2017-04-06 14:39:17 +02:00
7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
82b281fe12
gnu: r-e1071: Update to 1.6-8.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
1d1fbb7336
gnu: r-sparsem: Update to 1.76.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
0def707ad8
gnu: r-rmarkdown: Update to 1.4.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
ac5e810205
gnu: r-bbmisc: Update to 1.11.
...
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
f1870aef99
gnu: r-backports: Update to 1.0.5.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
c6e40db528
gnu: r-ade4: Update to 1.7-6.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
9e8fac0c45
gnu: r-chron: Update to 2.3-50.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
7267f358a0
gnu: r-stringr: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
5beda28f6b
gnu: r-stringi: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
9948b8e24c
gnu: r-digest: Update to 0.6.12.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
344e4741a1
gnu: r-survival: Update to 2.41-3.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
9704bda1b3
gnu: r-matrix: Update to 1.2-8.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
e15f962fef
gnu: r-htmltable: Update to 1.9.
...
* gnu/packages/web.scm (r-htmltable): Update to 1.9.
[propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets".
2017-04-06 14:39:11 +02:00
d3812fb233
gnu: r-curl: Update to 2.4.
...
* gnu/packages/web.scm (r-curl): Update to 2.4.
2017-04-06 14:39:11 +02:00
4cd07e487e
gnu: r-genomeinfodb: Update to 1.10.3.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3.
[propagated-inputs]: Add "r-rcurl".
2017-04-06 14:39:11 +02:00
acbeb2d56b
gnu: r-xvector: Update to 0.14.1.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1.
2017-04-06 14:39:11 +02:00
da250f733a
gnu: r-bioccheck: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1.
[propagated-inputs]: Remove "r-knitr" and "r-devtools".
2017-04-06 14:39:11 +02:00
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
bf6dcf59eb
gnu: Add r-commonmark.
...
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
1cbb07a8e4
gnu: Add r-desc.
...
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
67deeea41b
gnu: r-readr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
aad7808526
gnu: r-jsonlite: Update to 1.3.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.3.
2017-04-06 14:39:09 +02:00
538bce2472
gnu: ldc-bootstrap: Delete failing test.
...
* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in
build phase.
2017-04-06 14:34:12 +02:00
cb5be6df91
gnu: guile-aspell: Switch to Guile 2.2.
...
* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
2017-04-06 10:45:55 +02:00
7295087eb1
gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).
...
* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove
#:configure-flags. Add 'set-guilesitedir' phase.
2017-04-06 10:42:51 +02:00
234ea3d653
gnu: guile-aspell: Update to 0.4.
...
* gnu/packages/guile.scm (guile-aspell): Update to 0.4.
[arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source
tree layout.
2017-04-06 10:37:52 +02:00
79f912c710
Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."
...
This reverts commit 01fe019166
2017-04-05 22:45:41 +02:00
b28187cd0c
Revert "gnu: bc: Update to 1.07."
...
This reverts commit dfee7daedb
2017-04-05 21:23:41 +02:00
cd381c317b
gnu: Move audacity to audio.scm.
...
* gnu/packages/audacity.scm: Remove file and move audacity...
* gnu/packages/audio.scm: ...here.
* gnu/local.mk: Remove reference to removed file.
2017-04-05 15:08:14 -04:00
1108a920bd
gnu: sra-tools: Fix glibc naming conflict.
...
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase
"patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25.
2017-04-05 18:06:51 +02:00
beebe43176
gnu: sra-tools: Use "modify-phases" syntax.
...
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases"
syntax.
2017-04-05 18:06:51 +02:00
fc5b12879f
gnu: diamond: Update to 0.8.37.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37.
2017-04-05 22:49:01 +10:00
52b2d666ca
gnu: kdevelop: Update to 5.1.0.
...
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0.
2017-04-05 12:12:34 +02:00
dfee7daedb
gnu: bc: Update to 1.07.
...
* gnu/packages/algebra.scm (bc): Update to 1.07.
[native-inputs]: Add ed and texinfo.
[arguments]: Use default ‘configure’ phase.
2017-04-05 03:31:58 +02:00
f0bacad682
gnu: bc: Actually use readline.
...
* gnu/packages/algebra.scm (bc)[arguments]: Add ‘--with-readline’
to #:configure-flags.
2017-04-05 03:31:58 +02:00
5894b60491
gnu: algebra: Re-order imports.
...
* gnu/packages/algebra.scm: Order imports alphabetically.
2017-04-05 03:31:58 +02:00
01fe019166
gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'.
...
* gnu/packages/graphics.scm (openexr)[arguments]: Add
'set-ilmbase-directory-in-pc-file' phase.
2017-04-05 00:53:03 +02:00
8db947169f
gnu: icecat: Use bundled ICU to avoid crashes.
...
* gnu/packages/gnuzilla.scm (icecat)[arguments] <#:configure-flags>:
Temporarily comment out "--with-system-icu".
2017-04-04 20:18:38 +02:00
cca906754d
gnu: icecat: Re-enable parallel build.
...
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Re-enable parallel build.
2017-04-04 20:18:38 +02:00
33b2520175
gnu: python-django: Specify CPE name.
...
* gnu/packages/django.scm (python-django, python2-django)[properties]: Add
"cpe-name".
2017-04-04 18:30:52 +02:00
dcc9b6abc7
gnu: python-django: Update to 1.10.7 [fixes CVE-2017-7233 and CVE-2017-7234].
...
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.7.
2017-04-04 18:01:32 +02:00
4dc12417d2
gnu: gnupg: Update to 2.1.20.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.20.
[source]: Remove patch.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-04-04 17:46:28 +02:00
a3dea99107
gnu: python2-cython: Fix build on 32-bit platforms.
...
* gnu/packages/python.scm (python-cython, python2-cython)[source]: Add patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-04-04 17:46:28 +02:00
6beaa5a02a
gnu: moc: Add Ogg Vorbis support.
...
* gnu/packages/music.scm (moc)[inputs]: Add libogg and libvorbis.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-04-04 15:16:25 +02:00
0d78e37746
gnu: Add qjackctl.
...
* gnu/packages/audio.scm (qjackctl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 14:30:00 +02:00
b7506f74df
gnu: glog: Fix name demangling for GCC 5.
...
* gnu/packages/patches/glog-gcc-5-demangling.patch: New file.
* gnu/packages/logging.scm (glog)[sources]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-04-04 14:30:00 +02:00
f49ced6827
gnu: youtube-dl: Update to 2017.04.03.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.04.03.
2017-04-04 00:17:58 +02:00
f751b7596d
gnu: perl-email-simple: Update to 2.213.
...
* gnu/packages/mail.scm (perl-email-simple): Update to 2.213.
2017-04-04 00:17:58 +02:00
e26f2c67d6
gnu: perl-email-mime: Update to 1.940.
...
* gnu/packages/mail.scm (perl-email-mime): Update to 1.940.
2017-04-04 00:17:57 +02:00
153ea992e8
gnu: perl-lingua-en-tagger: Update to 0.28.
...
* gnu/packages/language.scm (perl-lingua-en-tagger): Update to 0.28.
2017-04-04 00:17:29 +02:00
5b5b4edfcc
gnu: perl-lingua-en-number-isordinal: Update to 0.05.
...
* gnu/packages/language.scm (perl-lingua-en-number-isordinal): Update to 0.05.
2017-04-04 00:17:29 +02:00
e2fb341f8f
gnu: perl-lingua-en-inflect-number: Update to 1.12.
...
* gnu/packages/language.scm (perl-lingua-en-inflect-number): Update to 1.12.
2017-04-04 00:17:29 +02:00
3581c3571a
gnu: perl-lingua-en-inflect: Update to 1.901.
...
* gnu/packages/language.scm (perl-lingua-en-inflect): Update to 1.901.
2017-04-04 00:17:28 +02:00
84f06e540c
gnu: perl-lingua-en-findnumber: Update to 1.32.
...
* gnu/packages/language.scm (perl-lingua-en-findnumber): Update to 1.32.
2017-04-04 00:17:28 +02:00
dd0cfb37da
gnu: perl-db-file: Update to 1.840.
...
* gnu/packages/databases.scm (perl-db-file): Update to 1.840.
2017-04-04 00:17:28 +02:00
2273b75154
gnu: perl-dbd-sqlite: Update to 1.54.
...
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.54.
2017-04-04 00:17:28 +02:00
4d40c6aab0
gnu: perl-dbd-pg: Update to 3.5.3.
...
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.5.3.
2017-04-04 00:17:28 +02:00
b98d4ec0aa
gnu: Add python-mando-0.3.1
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* gnu/packages/python.scm (python-mando-0.3.1): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 00:10:00 +02:00
b4dcfce51b
gnu: Add cifs-utils.
...
* gnu/packages/samba.scm (cifs-utils): New variable.
2017-04-03 21:45:53 +02:00
350a30845c
gnu: python-pexpect: Use python-pytest@3.0.
...
* gnu/packages/python.scm (python-pexpect, python2-pexpect)[native-inputs]:
Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
2017-04-03 19:25:57 +02:00
26bad5d7eb
gnu: nss, nss-certs: Update to 3.30.
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* gnu/packages/gnuzilla.scm (nss): Update to 3.30.
* gnu/packages/certs.scm (nss-certs): Update to 3.30.
* gnu/packages/patches/nss-increase-test-timeout.patch: Adjust patch context.
2017-04-03 19:25:57 +02:00
cd158a2b77
gnu: python-cython: Update to 0.25.2.
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* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.25.2.
2017-04-03 19:25:56 +02:00
9a49129651
gnu: audacity: Update to 2.1.3.
...
* gnu/packages/audacity.scm (audacity): Update to 2.1.3.
[source]: Fetch gzipped tar archive instead of a zip archive; remove
unnecessary patch.
[native-inputs]: Add autoconf, automake and libtool.
[arguments]: Add autoreconf phase to detect system libraries.
* gnu/packages/patches/audacity-fix-ffmpeg-binding.patch: Delete patch.
* gnu/local.mk: Remove reference to removed patch.
2017-04-03 11:51:52 -04:00
568f977f9c
gnu: emacs-elfeed: Enable tests.
...
* gnu/packages/emacs.scm (emacs-elfeed)[arguments]: Add a 'check' phase.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-02 23:08:55 -04:00
b53fa16f9c
gnu: brdf-explorer: Use HTTPS source URL.
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* gnu/packages/graphics.scm (brdf-explorer)[source]: Use HTTPS URL.
2017-04-02 20:00:52 -04:00
7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
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* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
9167488490
gnu: jbig2dec: Fix CVE-2016-9601.
...
* gnu/packages/patches/jbig2dec-CVE-2016-9601.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (jbig2dec)[source]: Use it.
2017-04-02 19:38:56 -04:00
2a0d5de5a9
Merge branch 'core-updates'
2017-04-03 00:13:06 +02:00
245575eaf3
gnu: guile-git: Install .go files to /site-ccache.
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* gnu/packages/guile.scm (guile-git)[arguments] <bootstrap>: Change
"/ccache" to "/site-ccache" in Makefile.am.
2017-04-03 00:12:51 +02:00
60f37e3cb1
gnu: sddm: Build without greenisland.
...
This Wayland compositor is currently abandonware and has known problems.
* gnu/packages/display-managers.scm (sddm)[inputs]: Remove GREENISLAND.
2017-04-02 23:42:56 +02:00
41f6d18fb6
gnu: guitarix: Update to 0.35.3.
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* gnu/packages/audio.scm (guitarix): Update to 0.35.3.
2017-04-02 18:30:42 +02:00
6800c79701
gnu: notmuch: Update to 0.24.1.
...
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-02 11:58:08 +02:00
cf1d581464
gnu: khmer: Build with gcc-4.
...
* gnu/packages/bioinformatics.scm (khmer)[inputs]: Add gcc-4.9.
2017-04-02 10:14:17 +10:00
800a7dd59e
gnu: ruby: Replace with ruby-2.3.4.
...
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.4): New variable.
2017-04-02 08:21:43 +10:00
22a494ec25
gnu: ruby-2.2: Update to 2.2.7.
...
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.7.
2017-04-02 08:20:41 +10:00
750e54ecbe
gnu: tuxguitar: Update to 1.4.
...
* gnu/packages/music.scm (tuxguitar): Update to 1.4.
[arguments]: Replace build phase "build-editor-utils" with "build-libraries";
install resources to the expected locations.
2017-04-02 17:25:05 +02:00
8723fe23fa
gnu: pd: Run autogen.sh script.
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* gnu/packages/music.scm (pd)[arguments]: Run autogen.sh instead of
plain autoreconf.
2017-04-02 17:25:05 +02:00
4712cbb0c7
gnu: pd: Fix indentation of phases.
...
* gnu/packages/music.scm (pd)[arguments]: Fix indentation.
2017-04-02 17:25:05 +02:00
037bf4f4a0
gnu: pd: Update to 0.47-1.
...
* gnu/packages/music.scm (pd): Update to 0.47-1.
2017-04-02 17:25:05 +02:00
f9b8b54e62
gnu: tuxguitar: Update home page URL.
...
* gnu/packages/music.scm (tuxguitar)[home-page]: Update URL.
2017-04-02 17:25:05 +02:00
8dbc5d2368
gnu: setbfree: Update to 0.8.4
...
* gnu/packages/music.scm (setbfree): Update to 0.8.4.
2017-04-02 17:25:05 +02:00
7175f4c2c1
gnu: amsynth: Build with LASH support.
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* gnu/packages/music.scm (amsynth)[inputs]: Add lash.
2017-04-02 17:25:04 +02:00
7e0befd45e
gnu: amsynth: Update to 1.7.1.
...
* gnu/packages/music.scm (amsynth): Update to 1.7.1.
[native-inputs]: Add intltool.
2017-04-02 17:25:04 +02:00
14fa5bde7e
gnu: samplv1: Update to 0.8.1.
...
* gnu/packages/music.scm (samplv1): Update to 0.8.1.
2017-04-02 17:25:04 +02:00
17ca1a39a6
gnu: drumkv1: Update to 0.8.1.
...
* gnu/packages/music.scm (drumkv1): Update to 0.8.1.
2017-04-02 17:25:04 +02:00
720de58bf7
gnu: synthv1: Update to 0.8.1.
...
* gnu/packages/music.scm (synthv1): Update to 0.8.1.
2017-04-02 17:25:04 +02:00
5feac7b04e
gnu: non-sequencer, non-session-manager: Update to 1.9.5-3.10c31e5.
...
* gnu/packages/music.scm (non-sequencer, non-session-manager): Update to
1.9.5-3.10c31e5.
2017-04-02 17:25:04 +02:00
57f1b3b8e7
gnu: lilypond: Update to 2.19.58.
...
* gnu/packages/music.scm (lilypond): Update to 2.19.58.
2017-04-02 17:25:03 +02:00
95708ed8d6
gnu: extempore: Update home page.
...
* gnu/packages/music.scm (extempore)[home-page]: Use new home page.
2017-04-02 17:25:03 +02:00
0a1513513a
gnu: aria-maestosa: Update to 1.4.13.
...
* gnu/packages/music.scm (aria-maestosa): Update to 1.4.13.
2017-04-02 17:25:03 +02:00
7f661d4909
gnu: btrfs-progs: Update to 4.10.2.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.2.
2017-04-01 16:13:02 +02:00
7070088a2d
gnu: yoshimi: Update to 1.5.1.
...
* gnu/packages/music.scm (yoshimi): Update to 1.5.1.
2017-04-02 11:37:11 +02:00
bacc1d26c6
gnu: linux-libre: Update to 4.10.8 [fixes CVE-2017-7184].
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.8.
(%linux-libre-hash): Update hash.
2017-03-31 18:20:54 -04:00
9554e5ae15
gnu: linux-libre@4.9: Update to 4.9.20 [fixes CVE-2017-7184].
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.20.
2017-03-31 18:20:20 -04:00
232be5bcd7
gnu: linux-libre@4.4: Update to 4.4.59 [fixes CVE-2017-7184].
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.59.
2017-03-31 18:19:13 -04:00
4299409018
gnu: guile-opengl: Build with Guile 2.2.
...
* gnu/packages/gl.scm (guile-opengl): Build with Guile 2.2.
2017-03-31 13:35:20 -04:00
b5b46f87bd
gnu: libtermkey: Update to 0.20.
...
gnu/packages/terminals.scm (libtermkey): Update to 0.20.
2017-03-31 15:33:16 +02:00
32ea65370e
gnu: xonsh: Update to 0.5.9.
...
* gnu/packages/shells.scm (xonsh): Update to 0.5.9.
2017-03-31 15:33:15 +02:00
a20d28bb7c
gnu: parallel: Update to 20170322.
...
* gnu/packages/parallel.scm (parallel): Update to 20170322.
2017-03-31 15:33:15 +02:00
80e138750d
gnu: tiled: Update to 0.18.2.
...
* gnu/packages/game-development.scm (tiled): Update to 0.18.2.
2017-03-31 09:25:51 -04:00
823354b2a8
gnu: nano: Update to 2.8.0.
...
* gnu/packages/nano.scm (nano): Update to 2.8.0.
2017-03-31 16:08:04 +03:00
ec23833267
gnu: hdparm: Use ‘modify-phases’ syntax.
...
* gnu/packages/linux.scm (hdparm): Use ‘modify-phases’.
2017-03-31 04:06:08 +02:00
02052b2c9b
gnu: hdparm: Expand synopsis and description.
...
* gnu/packages/linux.scm (hdparm)[synopsis, description]: Add some more
common uses, more examples, and more objective information.
2017-03-31 04:06:08 +02:00
0bea8ebe20
gnu: hdparm: Update to 9.51.
...
* gnu/packages/linux.scm (hdparm): Update to 9.51.
2017-03-31 04:06:08 +02:00
8e320dea30
gnu: goffice: Update to 0.10.34.
...
* gnu/packages/gnome.scm (goffice): Update to 0.10.34.
2017-03-31 04:06:07 +02:00
Ricardo Wurmus