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4260 Commits

Author SHA1 Message Date
Andreas Enge a7fd7b68a6 gnu: Rename module gnutls to tls. 
* gnu/packages/gnutls.scm: Rename to...
* gnu/packages/tls.scm: ... this.  Change module name accordingly.
* gnu/packages/{admin.scm, cups.scm, curl.scm, dc.scm, dns.scm, emacs.scm,
  ftp.scm, gnome.scm, gnunet.scm, gnupg.scm, gsasl.scm, lynx.scm,
  mail.scm, messaging.scm, package-management.scm, shishi.scm,
  task-management.scm, version-control.scm, video.scm, vpn.scm,
  webkit.scm, weechat.scm, wget.scm, wine.scm, xml.scm}: Adapt module
  import to new name.
* gnu-system.am (GNU_SYSTEM_MODULES): Rename gnutls module to tls.
 2015-07-05 17:09:42 +02:00
Andreas Enge a351c7c157 gnu: avidemux: Drop version 2.5. 
* gnu/packages/video.scm (avidemux-2.5): Delete variable.
 2015-07-05 12:23:12 +02:00
Ben Woodcroft af86047537 gnu: Add prodigal. 
* gnu/packages/bioinformatics.scm (prodigal): New variable.
 2015-07-05 02:56:53 -04:00
Ricardo Wurmus 151714ca8c gnu: shogun: Build with install RPATH. 
* gnu/packages/bioinformatics.scm (shogun)[arguments]: Add configure flag to
  build with install RPATH.
 2015-07-04 17:55:30 +02:00
Ludovic Courtès e4fef9df27 gnu: englightenment: Use https URLs. 
* gnu/packages/enlightenment.scm (efl, elementary, emotion-generic-players,
  terminology, enlightenment): Use https instead of http since the latter
  redirects to the former.
 2015-07-04 17:08:53 +02:00
Efraim Flashner c4f8a7aacc gnu: enlightenment: Update to 0.19.5. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.5.
 2015-07-04 16:50:18 +02:00
Efraim Flashner 88988b41a2 gnu: emotion-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (emotion-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:42 +02:00
Efraim Flashner 7b09969b2e gnu: evas-generic-loaders: Update to 1.14.0. 
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update
  to 1.14.0.
 2015-07-04 16:49:07 +02:00
Efraim Flashner 0179686d13 gnu: elementary: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.14.2.
 2015-07-04 16:48:26 +02:00
Efraim Flashner 7e22d6fee9 gnu: efl: Update to 1.14.2. 
* gnu/packages/enlightenment.scm (efl): Update to 1.14.2.
 2015-07-04 16:47:42 +02:00
pjotrp 022170dca1 gnu: Add ruby-rake-compiler. 
* gnu/packages/ruby.scm (ruby-rake-compiler): New variable.
 2015-07-04 09:47:33 -04:00
Ricardo Wurmus 80e907fe57 gnu: eigen: Update to 3.2.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.5.
 2015-07-04 13:32:52 +02:00
Mark H Weaver 4463c0d216 gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}. 
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-2735.patch,
  gnu/packages/patches/icecat-CVE-2015-2736.patch,
  gnu/packages/patches/icecat-CVE-2015-2738.patch,
  gnu/packages/patches/icecat-CVE-2015-2739.patch,
  gnu/packages/patches/icecat-CVE-2015-2740.patch,
  gnu/packages/patches/icecat-CVE-2015-2743.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-07-04 05:44:10 -04:00
Andreas Enge 257b6c4375 gnu: unrtf: Fix download location. 
* gnu/packages/unrtf.scm (unrtf): Fix download location.
 2015-07-03 22:54:51 +02:00
Ricardo Wurmus b05d1c68bc gnu: r: Replace "atlas" with "openblas". 
* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas".
 2015-07-03 18:45:14 +02:00
Ludovic Courtès 606c638016 gnu: gnutls: Move man3 pages to "doc" output. 
* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 4b0f2ef743 gnu: qt-4: Remove reference from "out" to "doc". 
* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag.
  Add 'move-doc' phase.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ff1989a599 gnu: qt-4: Use a more standard directory layout. 
* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir,
  -plugindir, and -translationdir.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès cba632c4a8 gnu: qt-4: Use 'modify-phases'. 
* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of
  'alist-replace'.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès ef2f51a445 gnu: cups-filter: Install backends and filters under lib/cups. 
This ensures that they are stripped during the 'strip' phase, thereby removing
references to GCC and linux-libre-headers that would otherwise be found in
debugging symbols.

* gnu/packages/cups.scm (cups-filters)[source]: Change pkgbackenddir and
  pkgfilterdir to $(PREFIX)/lib/cups/{filter,backend}.
  (cups)[arguments]: Adjust accordingly.
 2015-07-03 15:28:07 +02:00
Ludovic Courtès 6a52df505a gnu: mysql: Remove unnecessary binaries. 
This saves ~42 MiB on x86_64.

* gnu/packages/databases.scm (mysql)[arguments]: Add 'remove-extra-binaries'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 3f289db69d gnu: mysql: Strip references and GCC and other build-time dependencies. 
* gnu/packages/databases.scm (mysql)[arguments]: Add 'strip-extra-references'
  phase.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès b5b08878b6 gnu: mutt: Don't retain reference to GCC. 
* gnu/packages/patches/mutt-store-references.patch: New file.
* gnu/packages/mail.scm (mutt)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-07-03 15:28:06 +02:00
Ludovic Courtès 9161ba818d gnu: ghostscript: Add "doc" output. 
* gnu/packages/ghostscript.scm (ghostscript)[source](snippet): New field.
  [outputs]: New field.
  [arguments]: Add 'remove-doc-reference' phase.
 2015-07-03 15:28:06 +02:00
Mark H Weaver 08fa45b190 gnu: gnupg: Enable TLS support. 
* gnu/packages/gnupg.scm (gnupg)[native-inputs]: Add pkg-config.
  [inputs]: Add gnutls.
  (gnupg-2.0, gnupg-1)[native-inputs]: Override inherited value to be '().
 2015-07-02 12:35:12 -04:00
Mark H Weaver 5e5fa28e76 gnu: gnupg: Update to 2.1.6. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.6.
 2015-07-02 12:35:12 -04:00
Ricardo Wurmus c61fe02cc0 gnu: Add WarpedLMM. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable.
 2015-07-02 11:16:46 +02:00
Ricardo Wurmus f4f4ced8dc gnu: r: Set default pager. 
* gnu/packages/statistics.scm (r)[arguments]: Add phase "set-default-pager" to
  avoid "false" as a default pager.
 2015-07-02 10:50:55 +02:00
Ricardo Wurmus d6902798d1 gnu: powertabeditor: Replace "gcc" with "libiberty". 
* gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with
  "libiberty".
 2015-07-01 21:52:08 +02:00
Ricardo Wurmus d231bb3575 gnu: Add Hydrogen. 
* gnu/packages/music.scm (hydrogen): New variable.
 2015-07-01 21:52:08 +02:00
Mark H Weaver 5135aed92b gnu: linux-libre: Update to 4.1.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.1.
 2015-07-01 00:12:39 -04:00
Eric Bavier 58c1806908 gnu: git: Add inputs for send-email. 
* gnu/packages/version-control.scm (package-transitive-propagated-labels*)
  (package-propagated-input-refs): New procedures.
  (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl.
  [outputs]: Add send-email output.
  [arguments]: Add #:modules argument with srfi-1.  In 'split phase, wrap
  git-send-email.
 2015-06-30 05:01:42 -05:00
Eric Bavier c6ee18abb6 gnu: Add perl-authen-sasl. 
* gnu/packages/web.scm (perl-authen-sasl): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier 9fe938c19f gnu: Add perl-gssapi. 
* gnu/packages/web.scm (perl-gssapi): New variable.
 2015-06-30 05:01:42 -05:00
Eric Bavier b1096f3dbb gnu: Add perl-net-smtp-ssl. 
* gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
 2015-06-30 05:01:42 -05:00
Mark H Weaver d2e3caba5d gnu: curl: Disable test that fails on Hydra. 
* gnu/packages/curl.scm (arguments): Disable test 1510.
 2015-06-30 00:17:00 -04:00
Mark H Weaver 4617c2e383 gnu: curl: Update to 7.43.0. 
* gnu/packages/curl.scm (curl): Update to 7.43.0.
 2015-06-30 00:17:00 -04:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier 8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier 6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier 38f0a2bade gnu: openmpi: Upgrade to 1.8.5. 
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
  [native-inputs]: Add perl.
  [arguments]: Add configure flags for thread support.
 2015-06-29 15:34:36 -05:00
Eric Bavier 579f5c8a58 gnu: hwloc: Move numactl to inputs. 
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
  [inputs]: ...to here.
  [arguments]: New 'refine-libnuma' phase.
 2015-06-29 15:34:36 -05:00