b1096f3dbb
gnu: Add perl-net-smtp-ssl.
...
* gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
2015-06-30 05:01:42 -05:00
d2e3caba5d
gnu: curl: Disable test that fails on Hydra.
...
* gnu/packages/curl.scm (arguments): Disable test 1510.
2015-06-30 00:17:00 -04:00
4617c2e383
gnu: curl: Update to 7.43.0.
...
* gnu/packages/curl.scm (curl): Update to 7.43.0.
2015-06-30 00:17:00 -04:00
a17d45641b
gnu: Add deal.II.
...
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
a7f0141452
gnu: Add SLEPc.
...
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
(slepc-complex-openmpi): New variables.
2015-06-29 15:34:36 -05:00
8c94c886f6
gnu: Add arpack-ng-openmpi.
...
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
2015-06-29 15:34:36 -05:00
9a899cceab
gnu: petsc: Upgrade to 3.6.0.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29 15:34:36 -05:00
cec86422b7
gnu: Add MUMPS.
...
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
(mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
aa75ad0097
gnu: Add METIS.
...
* gnu/packages/maths.scm (metis): New variable.
2015-06-29 15:34:36 -05:00
700ff22219
gnu: Add p4est.
...
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
2015-06-29 15:34:36 -05:00
e1ff597a64
gnu: Add ScaLAPACK.
...
* gnu/packages/maths.scm (scalapack): New variable.
2015-06-29 15:34:36 -05:00
cf0ec6c46e
gnu: scotch, pt-scotch: Build esmumps libraries.
...
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
phase. Install esmumps libraries and headers in 'install phase.
(pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add
make parallelism.
2015-06-29 15:34:36 -05:00
d6602ee9d4
gnu: scotch, pt-scotch: Use modify-phases.
...
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
2015-06-29 15:34:36 -05:00
6c7985408f
gnu: Update scotch to 6.0.4.
...
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
[arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
38f0a2bade
gnu: openmpi: Upgrade to 1.8.5.
...
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
[native-inputs]: Add perl.
[arguments]: Add configure flags for thread support.
2015-06-29 15:34:36 -05:00
579f5c8a58
gnu: hwloc: Move numactl to inputs.
...
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
[inputs]: ...to here.
[arguments]: New 'refine-libnuma' phase.
2015-06-29 15:34:36 -05:00
ce7d9c989d
gnu: hwloc: Upgrade to 1.10.1.
...
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
[source]: Use patch.
[propagated-inputs]: Remove libpci.
[inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
2015-06-29 15:34:36 -05:00
7362371da5
gnu: python-mccabe: Fix license field.
...
* gnu/packages/python.scm (python-mccabe)[license]: 'expat' ->
'license:expat'.
2015-06-29 15:34:35 -05:00
e8df8f476e
gnu: Add python-flake8.
...
* gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
2015-06-30 00:07:56 +02:00
a59e017cb1
gnu: Add python-mccabe.
...
* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
2015-06-30 00:07:56 +02:00
e31d7f4420
gnu: Add python-pyflakes.
...
* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
2015-06-30 00:07:55 +02:00
d889e6c4d9
gnu: Add python-pep8.
...
* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
2015-06-30 00:07:55 +02:00
fe36d84eae
doc: Add 'guix environment' examples.
...
* doc/environment-gdb.scm: New file.
* doc.am (EXTRA_DIST): Add it.
* doc/guix.texi (Invoking guix environment): Clarify wording of the first
example. Add a --ad-hoc example upfront. Add an example for '-e', and one
for '-l'.
2015-06-29 23:08:36 +02:00
2573410865
gnu: withershins: Use new "libiberty" package.
...
* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
[arguments]: Simplify "find-libiberty" phase.
2015-06-29 21:01:13 +02:00
2b6b6d13e7
gnu: Add libiberty.
...
* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
2015-06-29 21:01:13 +02:00
74e03fccd3
gnu: r: Update to 3.2.1.
...
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29 16:13:28 +02:00
82c370dea1
gnu: Add Blast+.
...
* gnu/packages/bioinformatics.scm (blast+): New variable.
2015-06-29 16:13:28 +02:00
11906b2c38
gnu: global: Update to 6.5.
...
* gnu/packages/code.scm (global): Update to 6.5.
2015-06-29 14:42:10 +02:00
622a616e33
gnu: help2man: Update to 1.47.1.
...
* gnu/packages/man.scm (help2man): Update to 1.47.1.
2015-06-29 14:42:10 +02:00
b1f5fe0eb7
gnu: parallel: Update to 20150622.
...
* gnu/packages/parallel.scm (parallel): Update to 20150622.
2015-06-29 14:42:10 +02:00
dd138fc856
gnu: screen: Update to 4.3.1.
...
* gnu/packages/screen.scm (screen): Update to 4.3.1.
2015-06-29 14:42:10 +02:00
ce1e4bd58d
gnu: texinfo: Add version 6.0.
...
* gnu/packages/texinfo.scm (texinfo-6): New variable.
2015-06-29 14:42:10 +02:00
ab5f49cf6a
gnu: gcc-4.8: Update to 4.8.5.
...
* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
2015-06-29 14:42:10 +02:00
7ce216110c
doc: Add quote about running a monadic value.
...
* doc/guix.texi (The Store Monad): Add funny quote about "running" a monadic
value.
2015-06-29 14:42:10 +02:00
cc6ed47737
gnu: Add plink.
...
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
2015-06-29 12:54:48 +02:00
5c852e085d
gnu: synergy: Upgrade to 1.7.3.
...
* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
[source]: Use github for source download. Add snippet to remove
bundled source and binaries.
[inputs]: Add openssl.
[arguments]: Copy example configuration files to out during 'install
phase.
2015-06-28 12:03:30 -05:00
b5ad1659ba
gnu: Add sfarkxtc.
...
* gnu/packages/compression.scm (sfarkxtc): New variable.
2015-06-28 19:39:48 +02:00
646898b358
gnu: Add sfarklib.
...
* gnu/packages/compression.scm (sfarklib): New variable.
2015-06-28 19:39:48 +02:00
fcbeb00b70
gnu: Add Guitarix.
...
* gnu/packages/audio.scm (guitarix): New variable.
2015-06-28 18:59:57 +02:00
fb029d463d
gnu: ardour: Update to 4.1.
...
* gnu/packages/audio.scm (ardour): Update to 4.1.
2015-06-28 14:34:08 +02:00
58593975b0
gnu: Add libtar.
...
* gnu/packages/compression.scm (libtar): New variable.
2015-06-28 12:38:46 +02:00
1d642af987
Add Claes Wallin to 'AUTHORS'.
2015-06-27 20:26:06 +03:00
60def646bb
gnu: Add pv.
...
* gnu/package/pv.scm (pv): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Alex Kost <alezost@gmail.com>
2015-06-27 17:27:49 +03:00
c92f1c0a33
gnu: Refer to 'gcc' instead of 'gcc-4.9'.
...
* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
(cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
%gcc-static, %gcc-stripped): Likewise.
2015-06-26 17:06:30 +02:00
744985761a
gnu: youtube-dl: Update to 2015.06.25.
...
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
2015-06-26 16:56:43 +02:00
3a1bfe186d
gnu: Add python2-fastlmm.
...
* gnu/packages/python.scm (python2-fastlmm): New variable.
2015-06-26 15:29:01 +02:00
0dde623211
gnu: Add python2-pysnptools.
...
* gnu/packages/python.scm (python2-pysnptools): New variable.
2015-06-26 15:29:01 +02:00
74cc67372e
emacs: Add 'guix-root-map'.
...
* emacs/guix-base.el (guix-define-buffer-type): Move common key bindings
from here...
(guix-root-map): ... to here. New variable.
* emacs/guix-info.el (guix-info-mode-map): Use it.
* emacs/guix-list.el (guix-list-mode-map): Use it.
* doc/emacs.texi (Emacs Keymaps): Document it.
2015-06-26 16:15:45 +03:00
1c080cb68a
gnu: nettle: Disable ifunc method of library initialization.
...
* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
phase.
2015-06-25 16:47:59 -04:00
19afbea136
gnu: Replace versioned gfortran inputs with just "gfortran".
...
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
2015-06-25 18:28:54 +02:00
Eric Bavier