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Author SHA1 Message Date
Ricardo Wurmus c4ec1ae010
gnu: samba: Update to 4.6.4 [security fixes]. 
Fixes CVE-2017-7494.

* gnu/packages/samba.scm (samba): Update to 4.6.4.
 2017-05-24 16:39:31 +02:00
Ricardo Wurmus d1a914082b
Merge branch 'master' into core-updates 2017-05-24 12:05:47 +02:00
José Miguel Sánchez García 80f78e8f6f
gnu: python-cairocffi: Update to 0.8.0. 
* gnu/packages/python.scm (python-cairocffi): Update to 0.8.0.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-05-24 15:12:31 +05:30
José Miguel Sánchez García 3015d4556f
gnu: python-cairocffi: Update source and home-page URIs. 
* gnu/packages/python.scm (python-cairocffi)[source]: Update URI.
[home-page]: Update URI.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-05-24 15:12:31 +05:30
nee ae54843433
gnu: Add crawl-tiles. 
* gnu/packages/games.scm (crawl-tiles): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-05-24 05:15:21 +05:30
Jelle Licht ea584538ac
gnu: node: Use unbundled dependencies. 
* gnu/packages/node.scm (node)[inputs]: Add c-ares and http-parser.
[arguments]: Add configure flags for using system libraries.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-23 18:27:35 +02:00
Jelle Licht 1fdb883082
gnu: node: Update to 7.10.0. 
* gnu/packages/node.scm (node): Update to 7.10.0.
(node)[arguments]: Disabled more tests.
* gnu/packages/patches/node-9077.patch: Delete incompatible patch file.
Recreate patch file from node pull request 9077.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-23 17:55:59 +02:00
Nicolas Goaziou a7a7186ce6
gnu: Add MuseScore. 
* gnu/packages/music.scm (musescore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-23 13:35:44 +02:00
Arun Isaac b1d32ec0e2
gnu: emacs-auctex: Add arguments to work with new `install' phase. 
* gnu/packages/emacs.scm (emacs-auctex)[arguments]: Add #:include and
  #:exclude arguments.
 2017-05-23 06:12:49 +05:30
Arun Isaac e8cefe1103
gnu: emacs-slime: Add arguments to work with new `install' phase. 
* gnu/packages/emacs.scm (emacs-slime)[arguments]: Add #:include and #:exclude
  arguments.
 2017-05-23 06:12:49 +05:30
Ben Woodcroft b608765a2c
gnu: diamond: Update to 0.9.1. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.1.
 2017-05-22 21:17:41 +01:00
Marius Bakke 657fb6c947
gnu: sqlite: Update to 3.19.0. 
* gnu/packages/databases.scm (sqlite): Update to 3.19.0.
 2017-05-22 20:42:51 +02:00
Marius Bakke 9b5fccbc48
gnu: libidn2: Update to 2.0.2. 
* gnu/packages/libidn.scm (libidn2): Update to 2.0.2.
[source]: The tarball is now ".lz" compressed.
[native-inputs]: Add LZIP.
 2017-05-22 20:42:50 +02:00
Ricardo Wurmus 9117448e76
gnu: Remove GCJ. 
* gnu/packages/patches/gcj-arm-mode.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Delete it.
* gnu/packages/gcc.scm (javac.in, gcj, ecj-bootstrap): Remove variables.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus e441fc564b
gnu: ant: Implement in terms of ant/java8. 
* gnu/packages/java.scm (ant): Inherit from ant/java8.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus 8bbd040840
gnu: Add ant/java8. 
* gnu/packages/java.scm (ant/java8): New variable.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus 5c7952fbf4
gnu: ant: Move after bootstrap packages. 
* gnu/packages/java.scm (ant): Move package.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus e7a5d73ea9
gnu: ant: Delete bundled jars. 
* gnu/packages/java.scm (ant)[source]: Delete bundled jars in a snippet.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus fded0c69dd
gnu: ant: Inherit from ant-bootstrap. 
* gnu/packages/java.scm (ant)[build-system]
[home-page][synopsis][description][license]: Remove fields.
[arguments]: Adapt arguments of ant-bootstrap package.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus fc6e27271d
gnu: clojure: Move below bootstrap packages. 
* gnu/packages/java.scm (clojure): Move package.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 5490480c42
gnu: java-swt: Move below the bootstrap packages. 
* gnu/packages/java.scm (java-swt): Move the package.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus e2098e2d58
gnu: icedtea-7: Use icedtea-6 for bootstrapping. 
* gnu/packages/java.scm (icedtea-7)[source]: Remove Makefile.in patch to link
with GCJ libs.
[arguments]: Remove (ice-9 rdelim) module; adjust configure flags; do not add
GCJ headers to CPATH in build phase "set-additional-paths".
[native-inputs]: Remove gcj and ant; add icedtea-6 and ant-bootstrap.  Remove
autoconf and automake.
(icedtea-8)[native-inputs]: Delete "icedtea" from the inherited inputs, not
"gcj".
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 9841931668
gnu: Add icedtea-6. 
* gnu/packages/java.scm (icedtea-6): New variable.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 1bf56c7233
gnu: Add ecj-javac-on-jamvm-wrapper-final. 
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper-final): New variable.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 8c6091e3a6
gnu: Add jamvm. 
* gnu/packages/java.scm (jamvm): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 72885a4c8f
gnu: Add classpath-devel. 
* gnu/packages/java.scm (classpath-devel): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 7292d69419
gnu: Add ecj-javac-on-jamvm-wrapper. 
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 04d7cae2c4
gnu: Add classpath-jamvm-wrappers. 
* gnu/packages/java.scm (classpath-jamvm-wrappers): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 5f4402c7a3
gnu: Add jamvm-bootstrap. 
* gnu/packages/java.scm (jamvm-bootstrap): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus d3551e861e
gnu: Add classpath. 
* gnu/packages/java.scm (classpath): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 6a5829d995
gnu: Add ecj-javac-wrapper. 
* gnu/packages/java.scm (ecj-javac-wrapper): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 5461721fa0
gnu: Add ecj-bootstrap. 
* gnu/packages/java.scm (ecj-bootstrap): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 5783bd7730
gnu: Add ant-bootstrap. 
* gnu/packages/java.scm (ant-bootstrap): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 57f6c50db1
gnu: Add sablevm. 
* gnu/packages/java.scm (sablevm): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 2551fee8a0
gnu: Add sablevm-classpath. 
* gnu/packages/java.scm (sablevm-classpath): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus e1ae3587d2
gnu: Add jikes. 
* gnu/packages/java.scm (jikes): New variable.
 2017-05-22 18:55:34 +02:00
Ricardo Wurmus 296b3c631c
gnu: Add r-edaseq. 
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
 2017-05-22 18:54:59 +02:00
Ricardo Wurmus 7b46532779
gnu: Add r-deseq. 
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
 2017-05-22 18:54:59 +02:00
Ricardo Wurmus d4b83651d1
gnu: Add r-aroma-light. 
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
 2017-05-22 18:54:58 +02:00
Marius Bakke fd3782d13b
Merge branch 'version-0.13.0' 2017-05-22 18:25:01 +02:00
Marius Bakke 52d2a2be1f
gnu: vte-ng: Update to 0.48.3.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a.
 2017-05-22 15:28:59 +02:00
Marius Bakke b7c0c756da
gnu: gexiv2: Update to 0.10.6. 
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6.
 2017-05-22 15:17:12 +02:00
Marius Bakke 123e816816
gnu: dconf-editor: Update to 3.22.3. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3.
 2017-05-22 15:17:08 +02:00
Marius Bakke e6a36cf2f3
gnu: aisleriot: Update to 3.22.2. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2.
 2017-05-22 15:17:01 +02:00
Marius Bakke f2da7c861b
gnu: vte: Update to 0.48.3. 
* gnu/packages/gnome.scm (vte): Update to 0.48.3.
 2017-05-22 15:16:40 +02:00
Ben Woodcroft 74297231be
gnu: fraggenescan: Update to 1.30. 
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure.  Add new test
case.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft 7569613076
gnu: roary: Update to 3.8.2. 
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft 3cbfc149c3
gnu: taxtastic: Update to 0.6.4. 
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
 2017-05-22 11:44:19 +01:00
Roel Janssen b458413721
gnu: r-mutationalpatterns: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
 2017-05-22 09:44:08 +02:00
Marius Bakke f1d1ef71ea
gnu: v4l-utils: Update to 1.12.5. 
* gnu/packages/video.scm (v4l-utils): Update to 1.12.5.
 2017-05-21 17:12:48 +02:00
Marius Bakke cfa7473c2b
gnu: x265: Update to 2.4. 
* gnu/packages/video.scm (x265): Update to 2.4.
 2017-05-21 17:12:48 +02:00
Marius Bakke 3bc45ad460
gnu: vlc: Update to 2.2.5.1. 
* gnu/packages/video.scm (vlc): Update to 2.2.5.1.
[source]: Remove obsolete snippet.
 2017-05-21 17:12:48 +02:00
Marius Bakke ba58886a8c
gnu: libaacs: Update to 0.9.0. 
* gnu/packages/video.scm (libaacs): Update to 0.9.0.
 2017-05-21 17:12:48 +02:00
Ben Woodcroft ef81341f0e
gnu: diamond: Update to 0.9.0. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0.
[license]: Change to AGPL3+.
 2017-05-21 16:08:03 +01:00
Ludovic Courtès e9c53359e7
gnu: guix: Update to a6d728b. 2017-05-21 16:59:04 +02:00
Ludovic Courtès a6d728b7aa
gnu: guix: Update to 0.13.0. 2017-05-21 16:58:53 +02:00
Ben Woodcroft 88682c9a72
gnu: fasttree: Update to 2.1.10. 
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
 2017-05-21 15:42:08 +01:00
Ben Woodcroft abc08cbae6
gnu: python-biom-format: Update to 2.1.6. 
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
 2017-05-21 15:42:08 +01:00
Ben Woodcroft c522f57e22
gnu: python-future: Update to 0.16.0. 
* gnu/packages/python.scm (python-future): Update to 0.16.0.
 2017-05-21 15:42:08 +01:00
Marius Bakke 1d0aa4d8c2
gnu: ccid: Update to 1.4.27. 
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
 2017-05-21 16:37:54 +02:00
Marius Bakke 20d2e1faa9
gnu: fio: Update to 2.20. 
* gnu/packages/benchmark.scm (fio): Update to 2.20.
[arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
 2017-05-21 16:33:42 +02:00
Marius Bakke 31044e6ff2
gnu: nano: Update to 2.8.4. 
* gnu/packages/nano.scm (nano): Update to 2.8.4.
 2017-05-21 16:17:01 +02:00
Marius Bakke 18f61e002b
gnu: vim: Update to 8.0.0600. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
 2017-05-21 14:34:45 +02:00
Marius Bakke 8b1ff6f0ab
gnu: vim-full: Disable failing test. 
* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
 2017-05-21 14:34:45 +02:00
Mark H Weaver 718448e176
gnu: linux-libre: Update to 4.11.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2.
(%linux-libre-hash): Update hash.
 2017-05-21 02:03:32 -04:00
Mark H Weaver a08691dfbb
gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations. 
This removes support for the "shared memory communications over RDMA" (SMC-R)
networking protocol, which was added in 4.11 without the knowledge of the RDMA
maintainers, and which is thought to contain significant security flaws.  For
details, see <https://lwn.net/Articles/723081> and
<https://lwn.net/Articles/723070>.

* gnu/packages/aux-files/linux-libre/4.11-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC.

723#	0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
 2017-05-21 01:47:09 -04:00
Mark H Weaver 519fd6c367
gnu: linux-libre@4.9: Update to 4.9.29. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
 2017-05-21 01:45:21 -04:00
Mark H Weaver ec8d69ebfe
gnu: linux-libre@4.4: Update to 4.4.69. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
 2017-05-21 01:44:25 -04:00
Ludovic Courtès 324499184a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable. 
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
 2017-05-21 01:17:11 +02:00
Ludovic Courtès 9f8d6eb24a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable. 
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
 2017-05-21 01:14:51 +02:00
Leo Famulari fda33e495b
gnu: ghostscript: Add TODO comment about bundled jbig2dec. 
* gnu/packages/ghostscript.scm (ghostscript): Add comment.
 2017-05-20 16:26:29 -04:00
Leo Famulari 10cb88f85c
gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}. 
* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jbig2dec)[source]: Use them.
 2017-05-20 16:26:29 -04:00
Marius Bakke fefd4c197f
gnu: pcsc-lite: Update to 1.8.21. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
 2017-05-20 21:42:58 +02:00
Leo Famulari 12eecbf0bb
gnu: icedtea@3: Add aarch32-drop. 
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
 2017-05-20 14:57:22 -04:00
Leo Famulari db531f734a
gnu: icedtea@3: Update to 3.4.0 [security fixes]. 
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
 2017-05-20 14:57:22 -04:00
Leo Famulari b17bd261b0
gnu: imagemagick: Update to 6.9.8-6. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
 2017-05-20 14:06:20 -04:00
Ludovic Courtès 82ce81ba06
gnu: guix: Add 'guile2.0-guix'. 
* gnu/packages/package-management.scm (guile2.0-guix): New variable.
 2017-05-20 20:00:53 +02:00
Ludovic Courtès 74460d1121
gnu: libssh, guile-ssh: Add a "debug" output. 
* gnu/packages/ssh.scm (libssh)[outputs]: New field.
(guile-ssh)[outputs]: New field.
 2017-05-20 19:49:36 +02:00
Leo Famulari 7dccad95b6
gnu: icedtea@2: Update to 2.6.10 [security fixes]. 
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
 2017-05-20 14:39:50 +02:00
Leo Famulari 6a9defd747
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}]. 
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
 2017-05-20 14:39:50 +02:00
Ludovic Courtès c383dc520f
gnu: guile-ssh: Fix potential double-free/use-after-free issue. 
Fixes <http://bugs.gnu.org/26976>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
 2017-05-20 10:17:49 +02:00
Ludovic Courtès 56a03975eb
gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR. 
See <https://bugs.gnu.org/25836> for background.

* gnu/packages/patches/aspell-default-dict-dir.patch: New file.
* gnu/packages/aspell.scm (aspell)[source](patches): New field.
[native-search-paths]: New field.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-05-20 10:16:14 +02:00
Leo Famulari c90fd5564c
gnu: qemu: Fix CVE-2017-7493. 
* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu)[source]: Use it.
 2017-05-20 10:15:53 +02:00
Ricardo Wurmus d03b34cf19
gnu: glibc/hurd: Do not apply i686 patch. 
This is a follow-up to commit c2e4f14ac8.

* gnu/packages/base.scm (glibc/hurd)[arguments]: Override pre-configure phase
with a copy that does not include the patch application.
 2017-05-20 10:15:31 +02:00
Ricardo Wurmus 5d6e38a6c3
gnu: glibc/hurd: Use modify-phases syntax. 
* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax.
 2017-05-20 10:15:28 +02:00
Efraim Flashner ed5e3ab8ab
gnu: tor: Update to 0.3.0.7. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.7.
 2017-05-20 10:15:00 +02:00
Leo Famulari d30ce4a7e2
gnu: icedtea@2: Update to 2.6.10 [security fixes]. 
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
 2017-05-19 21:40:26 -04:00
ng0 cc5a76a74c
gnu: Add loksh. 
* gnu/packages/shells.scm (loksh): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-20 02:42:04 +02:00
Leo Famulari 70f8242b13
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}]. 
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
 2017-05-19 20:32:26 -04:00
Brendan Tildesley 1326166ebe
gnu: calibre: Don't create uninstaller. 
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:21 +02:00
Brendan Tildesley affaf98f77
gnu: calibre: Add exhaustive license list. 
* gnu/packages/ebook.scm (calibre): Add exhaustive license list.
(chmlib)[license]: Use license: prefix.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:21 +02:00
Brendan Tildesley 9b7dcc2703
gnu: calibre: Add missing dependencies. 
* gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython,
and python2-pygments.
[arguments]: Remove old TODO comments. libwmf and psutil are no longer used.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:21 +02:00
Brendan Tildesley eeba7d3a07
gnu: calibre: Unbundle chardet. 
* gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet.
[inputs]: Add python2-chardet.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:21 +02:00
Brendan Tildesley b3399a0985
gnu: calibre: Unbundle liberation fonts. 
*gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files.
[native-inputs]: Add font-liberation.
[arguments]: Calibre still references the bundled fonts, so we install the
packaged fonts to the directory the bundled fonts would have been.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:21 +02:00
Brendan Tildesley 29ec085170
gnu: calibre: Unbundle python2-markdown. 
* gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to
bundled markdown with packaged. Remove markdown from source.
[inputs]: Add python2-markdown as a dependency.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:21 +02:00
Brendan Tildesley d94a99ec66
gnu: calibre: Import unbundle feedparser patch from debian. 
* gnu/packages/ebook.scm (calibre)[source]: Reference new patch file.
[inputs]: Add python2-feedparser as an input.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:20 +02:00
Brendan Tildesley 7010d231db
gnu: calibre: Import dont-load-icons patch from debian. 
* gnu/packages/patches/calibre-dont-load-remote-icons.patch: New file.
* gnu/packages/ebooks.scm (calibre)[source]: Add reference to patch file.
* gnu/local.mk (dist_path_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:20 +02:00
Brendan Tildesley cd6171c1b4
gnu: calibre: Update to 2.85.1. 
* gnu/packages/ebooks.scm (calibre): Update to 2.85.1.
* gnu/packages/patches/calibre-drop-unrar.patch: Delete incompatible patch
file. Recreate debian patch file from the latest calibre git revision.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-19 23:49:20 +02:00
Marius Bakke 41fa164aa0
gnu: python-pyqt@4: Update to 4.12. 
* gnu/packages/qt.scm (python-pyqt-4): Update to 4.12.
[source]: Adjust URI to file rename.
 2017-05-19 21:33:43 +02:00
Marius Bakke 5ac3a671d8
gnu: python-pyqt: Update to 5.8.2. 
* gnu/packages/qt.scm (python-pyqt): Update to 5.8.2.
 2017-05-19 21:24:11 +02:00
Marius Bakke f6da41b54d
gnu: python-sip: Update to 4.19.2. 
* gnu/packages/qt.scm (python-sip): Update to 4.19.2.
 2017-05-19 21:24:11 +02:00
Ludovic Courtès e7fbd49132
gnu: guile-ssh: Fix potential double-free/use-after-free issue. 
Fixes <http://bugs.gnu.org/26976>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
 2017-05-19 10:50:20 +02:00
Tobias Geerinckx-Rice acf82a1152
gnu: btrfs-progs: Update to 4.11. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.
 2017-05-18 18:55:11 +02:00
Tobias Geerinckx-Rice 4d2e1d1442
gnu: mcelog: Update to 150. 
* gnu/packages/linux.scm (mcelog): Update to 150.
 2017-05-18 18:55:11 +02:00
Efraim Flashner 8cf6a63382
gnu: nano: Update to 2.8.3. 
* gnu/packages/nano.scm (nano): Update to 2.8.3.
 2017-05-18 19:13:10 +03:00
Pjotr Prins 2b18ad054c
gnu: Add gemma. 
* gnu/packages/bioinformatics.scm (gemma): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-18 14:22:03 +02:00
Kyle Meyer f69c29f76d
gnu: Add emacs-helm-projectile. 
* gnu/packages/emacs.scm (emacs-helm-projectile): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-18 14:22:03 +02:00
Kyle Meyer 03cc1cf35b
gnu: Add emacs-helm-swoop. 
* gnu/packages/emacs.scm (emacs-helm-swoop): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-18 14:22:03 +02:00
Kyle Meyer 12e72d2a12
gnu: emacs-helm: Update to 2.7.0. 
* gnu/packages/emacs.scm (emacs-helm): Update to 2.7.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-18 14:22:03 +02:00
Kyle Meyer 51ef4af6b3
gnu: emacs-async: Update to 1.9.2. 
* gnu/packages/emacs.scm (emacs-async): Update to 1.9.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-18 14:22:02 +02:00
Efraim Flashner a20e00ddaf
gnu: qt: Update to 5.8.0. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2,
qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d,
qtcharts, qtdatavis3d, qtwebkit): Update to 5.8.0.
(qtdeclarative-render2d)[properties]: New field, package has been
absorbed by qtdeclarative and thus marked as superseded by it.
 2017-05-18 10:17:42 +03:00
Efraim Flashner 4e825e2da3
gnu: qtbase: Update configure flags. 
* gnu/packages/qt.scm (qtbase)[arguments]: Change the configure flags to
not use the precompiled headers. Enable x86_64 special hardware
instructions which have runtime detection.
 2017-05-18 09:55:28 +03:00
Efraim Flashner 04f8decf1f
gnu: qtbase: Don't use bundled double-conversion. 
* gnu/packages/qt.scm (qtbase)[inputs]: Add double-conversion.
 2017-05-18 09:52:49 +03:00
Efraim Flashner 45f5bc0e74
gnu: qtconnectivity: Fix building on armhf and aarch64. 
* gnu/packages/qt.scm (qtconnectivity)[arguments]: Add a phase to remove
a test which fails on arm hardware.
 2017-05-18 09:51:23 +03:00
Efraim Flashner 7c5cf7a29d
gnu: qtscript: Fix building on aarch64. 
* gnu/packages/patches/qtscript-disable-tests.patch: New file.
* gnu/packages/qt.scm (qtscript)[source]: Use it.
* gnu/local.am (dist_patch_DATA): Register it.
 2017-05-18 09:49:43 +03:00
Kei Kebreau b81b8943cf
gnu: openttd: Update to 1.7.0. 
* gnu/packages/games.scm (openttd): Update to 1.7.0.
 2017-05-17 21:55:01 -04:00
Leo Famulari 0be20a8353
gnu: gnupg: Update to 2.1.21. 
This release fixes a keyring corruption bug introduced in 2.1.20. See
<https://lists.gnupg.org/pipermail/gnupg-announce/2017q2/000405.html> for more
information.

* gnu/packages/gnupg.scm (gnupg): Update to 2.1.21.
 2017-05-17 21:48:29 -04:00
Leo Famulari 89c83e8c3e
gnu: npth: Update to 1.4. 
* gnu/packages/gnupg.scm (npth): Update to 1.4.
 2017-05-17 21:48:29 -04:00
Leo Famulari b193fb2851
gnu: shadow: Update to 4.5. 
This fixes a regression introduced by the fix for CVE-2017-2616.
See <https://github.com/shadow-maint/shadow/pull/72> for more information.

* gnu/packages/admin.scm (shadow): Update to 4.5.
[source]: Remove patches.
* gnu/packages/patches/shadow-4.4-su-snprintf-fix.patch,
gnu/packages/patches/shadow-CVE-2017-2616.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-05-17 21:20:29 -04:00
Kei Kebreau 6aa095f10c
gnu: manaplus: Update to 1.7.5.14. 
* gnu/packages/games.scm (manaplus): Update to 1.7.5.14.
[inputs]: Remove physfs.
 2017-05-17 21:06:59 -04:00
Kei Kebreau e28cb7a5f5
gnu: gamine: Update to 1.5. 
* gnu/packages/games.scm (gamine): Update to 1.5.
 2017-05-17 19:18:34 -04:00
ng0 45433bb03d
gnu: mc: Add unzip to inputs. 
* gnu/packages/mc.scm (mc)[inputs]: Add unzip.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-18 01:00:53 +02:00
Kei Kebreau 32199e9aa6
gnu: fizmo: Update to 0.8.4. 
* gnu/packages/games.scm (fizmo): Update to 0.8.4.
[inputs]: Add freetype; change sdl to sdl2.
 2017-05-17 17:35:38 -04:00
Kei Kebreau ec84c7870e
gnu: gnubg: Update to 1.05. 
* gnu/packages/games.scm (gnubg): Update to 1.05.
 2017-05-17 17:33:35 -04:00
Mark H Weaver 05bf7f507a
gnu: linux-libre: Update to 4.11.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.1.
(%linux-libre-hash): Update hash.
 2017-05-17 14:56:18 -04:00
Mark H Weaver d6a02184f4
gnu: linux-libre@4.9: Update to 4.9.28. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.28.
 2017-05-17 14:55:41 -04:00
Mark H Weaver 42ba7b6f2f
gnu: linux-libre@4.4: Update to 4.4.68. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.68.
 2017-05-17 14:54:53 -04:00
Christopher Baines e7ee50f2d2
gnu: bzip2: Patch bzip2 utilities. 
* gnu/packages/compression.scm (bzip2)[arguments]: Add patch-script phase to
  remove absolute reference to /bin/rm.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-17 16:57:05 +02:00
Christopher Baines 03bc86b8f4
gnu: bzip2: Use 'modify-phases' syntax. 
* gnu/packages/compression.scm (bzip2)[arguments]: Use 'modify-phases' syntax.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-17 16:56:53 +02:00
Christopher Baines 872a6fd988
gnu: tailon: Use absolute paths for commands. 
* gnu/packages/logging.scm (tailon)[arguments]: Patch commands.py to reference
  grep, awk, sed and tail by absolute paths.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-17 16:50:41 +02:00
Ludovic Courtès 411ba51189
gnu: Add gspell. 
* gnu/packages/patches/gspell-dash-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gspell): New variable.

Co-authored-by: humanitiesNerd <catonano@gmail.com>
 2017-05-17 16:20:06 +02:00
Ludovic Courtès 6d35b1c99c
gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR. 
See <https://bugs.gnu.org/25836> for background.

* gnu/packages/patches/aspell-default-dict-dir.patch: New file.
* gnu/packages/aspell.scm (aspell)[source](patches): New field.
[native-search-paths]: New field.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-05-17 16:20:06 +02:00
Nicolas Goaziou 102a0e88cd
gnu: emacs-org: Update to 20170515. 
* gnu/packages/emacs.scm (emacs-org): Update emacs-org.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-17 16:20:06 +02:00
Marius Bakke 5afc737363
gnu: mes: Don't fail when (%current-target-system) is #f. 
* gnu/packages/mes.scm (mes)[native-inputs]: Test string equality differently.
 2017-05-17 16:14:01 +02:00
Leo Famulari e7620b649c
gnu: qemu: Fix CVE-2017-7493. 
* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu)[source]: Use it.
 2017-05-17 07:45:01 -04:00
Ben Woodcroft 8d171471cf
gnu: ruby-rack: Update to 2.0.3. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.3.
 2017-05-17 10:29:38 +02:00
Leo Famulari 44a0591b2b
gnu: certbot, python-acme: Update to 0.14.1. 
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.14.1.
 2017-05-16 22:51:25 -04:00
Ben Woodcroft 21aecec1a9
gnu: ruby-concurrent: Update to 1.0.5. 
* gnu/packages/ruby.scm (ruby-concurrent): Update to 1.0.5.
* gnu/packages/patches/ruby-concurrent-test-arm.patch: Adjust accordingly.
 2017-05-17 00:28:56 +02:00
Ben Woodcroft 473f34cbdc
gnu: bundler: Update to 1.14.6. 
* gnu/packages/ruby.scm (bundler): Update to 1.14.6.
 2017-05-17 00:28:56 +02:00
Jan Nieuwenhuizen e0bb0a81ec
gnu: mes: Update to 0.6. 
* gnu/packages/mes.scm (mes): Update to 0.6.
 2017-05-17 00:00:05 +02:00
Julien Lepiller 16dcac5b26
gnu: php: Update to 7.1.5. 
* gnu/packages/php.scm (php): Update to 7.1.5.
[arguments]: Remove a no longer relevant test fix.
 2017-05-16 22:43:34 +02:00
Ricardo Wurmus 441e99d433
gnu: glibc/hurd: Do not apply i686 patch. 
This is a follow-up to commit c2e4f14ac8.

* gnu/packages/base.scm (glibc/hurd)[arguments]: Override pre-configure phase
with a copy that does not include the patch application.
 2017-05-16 22:37:31 +02:00
Ricardo Wurmus 711a0dcefa
gnu: glibc/hurd: Use modify-phases syntax. 
* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax.
 2017-05-16 22:37:31 +02:00
Kei Kebreau 231e48d6db
gnu: emacspeak: Update to 46.0. 
* gnu/packages/emacs.scm (emacspeak): Update to 46.0.
[source]: Add snippet to delete pre-compiled Emacs Lisp files.
[arguments]: Adjust phases for the update.
 2017-05-16 16:02:59 -04:00
Efraim Flashner ca05bc0e1e
gnu: tor: Update to 0.3.0.7. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.7.
 2017-05-16 22:26:22 +03:00
Ricardo Wurmus 6db77c7ca1
gnu: java-stringtemplate: Get closer to fixing tests. 
* gnu/packages/java.scm (java-stringtemplate)[arguments]: Set test-dir and
override default test target.  Keep tests disabled because they fail for
unknown reasons.
[inputs]: Add java-junit.
 2017-05-16 15:18:17 +02:00
Ricardo Wurmus 1345eeb03a
gnu: Rename stringtemplate4-4.0.6 to java-stringtemplate-4.0.6. 
* gnu/packages/java.scm (stringtemplate4-4.0.6): Rename this...
(java-stringtemplate-4.0.6): ...to this.
(antlr3)[propagated-inputs]: Adjust accordingly.
 2017-05-16 15:18:17 +02:00
Ricardo Wurmus 64b7efc0db
gnu: Rename stringtemplate4 to java-stringtemplate. 
* gnu/packages/java.scm (stringtemplate4): Rename this...
(java-stringtemplate): ...to this.
(stringtemplate4-4.0.6)[inherit]: Adjust accordingly.
(antlr3)[inputs]: Likewise.
 2017-05-16 15:18:17 +02:00
Ricardo Wurmus f4aa4cfe00
gnu: stringtemplate4: Prettify "generate-grammar" phase. 
* gnu/packages/java.scm (stringtemplate4)[arguments]: Rewrite
"generate-grammar" phase to use "with-directory-excursion" and to report
success or failure.
 2017-05-16 15:18:17 +02:00
Ricardo Wurmus 407df789cf
gnu: stringtemplate4: Inherit from java-stringtemplate-3. 
* gnu/packages/java.scm (stringtemplate4)[inherit]: Add
"java-stringtemplate-3" as parent.
[home-page, synopsis, description, license]: Inherit from parent.
 2017-05-16 15:18:17 +02:00