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416 Commits

Author SHA1 Message Date
Ricardo Wurmus 191c710139 gnu: Add crossmap. 
* gnu/packages/bioinformatics.scm (crossmap): New variable.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-03-02 17:23:56 +01:00
Mark H Weaver 8830740643 gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 
* gnu/packages/patches/icecat-CVE-2015-0822.patch,
  gnu/packages/patches/icecat-CVE-2015-0827-pt-1.patch,
  gnu/packages/patches/icecat-CVE-2015-0827-pt-2.patch,
  gnu/packages/patches/icecat-CVE-2015-0827-pt-3.patch,
  gnu/packages/patches/icecat-CVE-2015-0831-pt-1.patch,
  gnu/packages/patches/icecat-CVE-2015-0831-pt-2.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-01.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-02.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-03.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-04.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-05.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-06.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-07.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-08.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-09.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-10.patch,
  gnu/packages/patches/icecat-CVE-2015-0836-pt-11.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-02-26 00:39:31 -05:00
Mark H Weaver 5be2f8844d gnu: luajit: Fix patch file names in gnu-system.am. 
* gnu-system.am (dist_patch_DATA): Fix patch file names.
 2015-02-25 21:00:43 -05:00
Tomáš Čech dcaf2511d7 gnu: Fix luajit installation 
* gnu/packages/lua.scm (luajit): Apply 2 patches.
* gnu-system.am (dist_patch_DATA): Register 2 patches.
* gnu/packages/patches/luajit-no_ldconfig.patch: New file.
* gnu/packages/patches/luajit-symlinks.patch: New file.
 2015-02-26 00:43:02 +01:00
Ludovic Courtès cab6a2535a gnu: Add OpenEXR and IlmBase. 
* gnu/packages/graphics.scm (ilmbase, openexr): New variables.
* gnu/packages/patches/openexr-missing-samples.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-02-25 16:58:50 +01:00
Taylan Ulrich Bayırlı/Kammer e6caa52d85 gnu: Add cpufrequtils. 
* gnu/packages/linux.scm (cpufrequtils): New variable.
* gnu/packages/patches/cpufrequtils-fix-aclocal.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-02-25 15:27:48 +01:00
Andreas Enge da71f145c6 gnu: Add python2-rdflib. 
* gnu/packages/rdf.scm (python2-rdflib): New variable.
  (python-rdflib): Add patch.
* gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2015-02-25 00:58:20 +01:00
David Thompson 61452a5ab1 gnu: Add pumpa. 
* gnu/packages/pumpio.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-24 18:00:31 -05:00
Taylan Ulrich Bayırlı/Kammer 927b6728f0 gnu: Add wxwidgets. 
* gnu/packages/wxwidgets.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-23 21:56:41 +01:00
Andreas Enge 8cc91fa041 gnu: Add weex. 
* gnu/packages/ftp.scm (weex): New variable.
* gnu/packages/patches/weex-vacopy.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2015-02-21 19:24:54 +01:00
Andreas Enge a34816ef6e gnu: chmlib: Patch for compilation on mips. 
* gnu/packages/patches/chmlib-inttypes.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/ebook.scm (chmlib): Apply patch.
 2015-02-21 10:17:10 +01:00
Andreas Enge 5078e98a61 gnu: Add aarddict. 
* gnu/packages/aarddict.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-16 21:52:58 +01:00
Ricardo Wurmus cb7e486797 gnu: Add R. 
* gnu/packages/statistics.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it
* guix/download.scm (%mirrors): Add CRAN mirrors.
 2015-02-16 16:35:41 +01:00
Andreas Enge 0b0e11a9d8 gnu: Add xdg-utils. 
* gnu/packages/freedesktop.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-14 19:57:23 +01:00
Taylan Ulrich Bayırlı/Kammer 8d872ae001 gnu: Add moreutils. 
* gnu/packages/moreutils.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-14 12:43:56 +01:00
Andreas Enge cf053a4f06 gnu: Add certdata2pem Python script. 
* gnu/packages/certs.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-13 11:19:37 +01:00
Ludovic Courtès aee6180c10 gnu: Add glibc-locales. 
* gnu/packages/patches/glibc-locales.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc-locales): New variable.
 2015-02-11 11:19:29 +01:00
Andreas Enge 947ae54559 gnu: Add chmlib. 
* gnu/packages/ebook.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-07 20:12:36 +01:00
Mark H Weaver 7747c4ca3d gnu: wicd: Fix curses client to work with urwid 1.3. 
* gnu/packages/patches/wicd-urwid-1.3.patch: New file.
* gnu-system (dist_patch_DATA): Add it.
* gnu/packages/wicd.scm (wicd): Add patch.
 2015-02-06 15:26:56 -05:00
Taylan Ulrich Bayırlı/Kammer ea119a288f gnu: Add ngircd. 
* gnu/packages/messaging.scm (ngircd): New variable.
* gnu/packages/patches/ngircd-no-dns-in-tests.patch: New file.
* gnu/packages/patches/ngircd-handle-zombies.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2015-02-05 17:08:39 +01:00
Mark H Weaver 10b60c0430 gnu: Add wicd. 
Based on preliminary work by Pierre-Antoine Rault <par@rigelk.eu>

* gnu/packages/wicd.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-02-04 18:20:17 -05:00
Ludovic Courtès 996ed73948 system: Add bindings to configure libc's NSS. 
* gnu/system/nss.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu.scm (%public-modules): Add it.
* gnu/system.scm (<operating-system>)[name-service-switch]: New field.
  (etc-directory): Add #:nss parameter and honor it.
  (operating-system-etc-directory): Adjust call accordingly.
* doc/guix.texi (operating-system Reference): Document
  'name-service-switch'.
  (Name Service Switch): New section.
 2015-02-04 22:49:35 +01:00
Mark H Weaver f5844fde7d gnu: Add libffcall. 
* gnu/packages/libffcall.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.

Co-Authored-By: Joshua S. Grant <jgrant@parenthetical.io>
 2015-02-04 01:51:21 -05:00
宋文武 93dc836f9d gnu: Add librep. 
* gnu/packages/sawfish.scm: New file.
* gnu/packages/patches/librep-rules.mk.patch: New file.
* gnu-system.am: Add them.
 2015-02-03 22:13:00 +08:00
Mark H Weaver 3b02429c8a gnu: libvpx: Apply bug fixes. 
Fixes build on armhf.

* gnu/packages/patches/libvpx-fix-armhf-link.patch,
  gnu/packages/patches/libvpx-fix-ssse3-quantize.patch,
  gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/video.scm (libvpx): Add patches.  On armhf, add additional
  configure flags to avoid requiring support for NEON.
 2015-02-02 03:54:42 -05:00
Taylan Ulrich Bayırlı/Kammer dd2efd3d5b gnu: Add dnsmasq. 
* gnu-system.am (GNU_SYSTEM_MODULES): Add dnsmasq.scm.
* gnu/packages/dnsmasq.scm: New file.
 2015-02-01 17:53:36 -05:00
Mark H Weaver 582100a0c0 gnu: icecat: Update to 31.4.0. 
* gnu/packages/patches/icecat-CVE-2014-1587-bug-1042567.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1072847.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1079729.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1080312.patch,
  gnu/packages/patches/icecat-CVE-2014-1587-bug-1089207.patch,
  gnu/packages/patches/icecat-CVE-2014-1590.patch,
  gnu/packages/patches/icecat-CVE-2014-1592.patch,
  gnu/packages/patches/icecat-CVE-2014-1593.patch,
  gnu/packages/patches/icecat-CVE-2014-1594.patch,
  gnu/packages/patches/icecat-CVE-2014-8634-pt1.patch,
  gnu/packages/patches/icecat-CVE-2014-8634-pt2.patch,
  gnu/packages/patches/icecat-CVE-2014-8638-pt1.patch,
  gnu/packages/patches/icecat-CVE-2014-8638-pt2.patch,
  gnu/packages/patches/icecat-CVE-2014-8639.patch,
  gnu/packages/patches/icecat-CVE-2014-8641.patch,
  gnu/packages/patches/icecat-armhf-xpcom.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm: Update to 31.4.0.  Remove patches.
 2015-01-30 10:54:41 -05:00
Ricardo Wurmus 241e122193 gnu: bowtie: fix build errors 
* gnu/packages/bioinformatics.scm (bowtie): Add 'supported-systems' field and
  add Makefile patch.
* gnu/packages/patches/bowtie-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-01-30 10:45:27 +01:00
Ricardo Wurmus 8c6c91fead gnu: Add Threading Building Blocks. 
* gnu/packages/tbb.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-01-29 11:40:06 +01:00
Ricardo Wurmus 0760e3a1aa gnu: Add IcedTea 6 
* gnu/packages/java.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-01-29 10:32:42 +01:00
Federico Beffa 18a5a9a17a gnu: Add libupnp. 
* gnu/packages/libupnp.scm: New file.
* gnu-system.am: Add the new file.
 2015-01-28 16:09:57 +01:00
Alex Kost 6256553cc1 gnu: Add sxiv. 
* gnu/packages/sxiv.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-01-27 18:02:45 +03:00
Ricardo Wurmus 74574fd1e3 gnu: Add GCJ 
* gnu/packages/gcc.scm (gcj-4.8, ecj-bootstrap-4.8): New variables.
* gnu/packages/javac.in: New file.
* gnu-system.am (MISC_DISTRO_FILES): Add it.
* Makefile.am (nobase_dist_guilemodule_DATA): Add MISC_DISTRO_FILES.
 2015-01-27 15:33:08 +01:00
rekado fb68469f13 gnu: Add JACK 
* gnu/packages/audio.scm: New file
* gnu-system.am (GNU_SYSTEM_MODULES): Add it
 2015-01-27 10:53:51 +01:00
Mark H Weaver 72c5ad8bae gnu: Add gobject-introspection patches to gnu-system.am. 
* gnu-system.am (dist_patch_DATA): Add
  'gobject-introspection-absolute-shlib-path.patch' and
  'gobject-introspection-girepository.patch'.
 2015-01-26 05:13:05 -05:00
Andreas Enge 014e7dd8f0 gnu: Add python-pyqt. 
* gnu/packages/qt.scm (python-pyqt, python2-pyqt): New variables.
* gnu/packages/patches/pyqt-configure.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2015-01-25 20:10:03 +01:00
Ludovic Courtès 9f533d60df gnu: util-linux: Update to 2.25.2. 
* gnu/packages/linux.scm (util-linux): Update to 2.25.2.  Remove
  util-linux-perl.patch, and add util-linux-tests.patch.  Adjust
  'snippet'.
  [arguments]: Remove 'patch-chkdupexe' phase.  Add 'pre-check' phase.
  [native-inputs]: Add NET-BASE.
* gnu/packages/patches/util-linux-perl.patch: Remove.
* gnu/packages/patches/util-linux-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-01-23 16:29:19 +01:00
Marek Benc 2baf46348f gnu: nvi: Fix Berkely DB compatability issues. 
* gnu/packages/patches/nvi-db4.patch: New file.
* gnu/packages/patches/nvi-dbpagesize-binpower.patch: New file.
* gnu/packages/nvi.scm (nvi): Make use of them.
* gnu-system.am (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-01-23 09:44:42 +01:00
Ludovic Courtès e9257d377a gnu: Add S-Lang. 
* gnu/packages/slang.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-01-21 15:16:10 +01:00
Andreas Enge 2dfed643aa gnu: Register patches for installation. 
* gnu-system.am (dist_patch_DATA): Add patches for aegis, clucene,
    libcanberra and lua-5.1.
 2015-01-20 23:25:12 +01:00
Ricardo Wurmus 510023184a gnu: Add CUPS. 
* gnu/packages/cups.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-01-19 12:38:43 +01:00
宋文武 c1b0c7d976 gnu: Add fvwm. 
* gnu/packages/fvwm.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-01-17 17:11:55 +08:00
Ludovic Courtès f327b36edb gnu: Add CGAL. 
* gnu/packages/graphics.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-01-16 21:11:55 +01:00
Mark H Weaver 2a666e9cfd gnu: icecat: Add fixes for CVE-2014-{8634,8638,8639,8641}. 
* gnu/packages/patches/icecat-CVE-2014-8634-pt1.patch,
  gnu/packages/patches/icecat-CVE-2014-8634-pt2.patch,
  gnu/packages/patches/icecat-CVE-2014-8638-pt1.patch,
  gnu/packages/patches/icecat-CVE-2014-8638-pt2.patch,
  gnu/packages/patches/icecat-CVE-2014-8639.patch,
  gnu/packages/patches/icecat-CVE-2014-8641.patch,
  gnu/packages/patches/icecat-armhf-xpcom.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2015-01-16 09:14:08 -05:00
Ludovic Courtès 57b7e1a62d Merge branch 'core-updates' 
Conflicts:
	gnu/packages/bootstrap.scm
 2015-01-16 13:27:03 +01:00
Mark H Weaver b01a0ba86e gnu: gd: Update to 2.1.1. 
* gnu/packages/patches/gd-mips64-deplibs-fix.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gd.scm (gd): Update to 2.1.1.  Update source URI.  Remove
  patch.  Remove 'chdir' phase.  Add pkg-config to native-inputs.
 2015-01-15 20:27:57 -05:00
宋文武 2b2f91ad87 gnu: ninja: Disable testcase SubprocessTest.InterruptChild. 
* gnu/packages/patches/ninja-tests.patch: New file.
* gnu/packages/ninja.scm (ninja): Add the patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-01-15 11:05:18 +08:00
Mark H Weaver a813710a5f Merge branch 'master' into core-updates 2015-01-13 12:14:08 -05:00
Ludovic Courtès ab69d9ac86 gnu: Move xlockmore to (gnu packages xdisorg). 
* gnu/packages/xlockmore.scm: Remove.
* gnu/packages/xdisorg.scm (xlockmore): New variable, from
  xlockmore.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove xlockmore.scm.
 2015-01-12 23:33:08 +01:00
Mark H Weaver 798e004538 gnu: sqlite: Update to 3.8.7.4. 
* gnu/packages/patches/sqlite-large-page-size-fix.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/databases.scm (sqlite): Update to 3.8.7.4.  Remove patch.
 2015-01-11 15:28:41 -05:00