67c05f587a
gnu: python-git-review: Update to 1.27.0.
...
* gnu/packages/openstack.scm (python-git-review): Update to 1.27.0.
[arguments]: Get the 'wrap-program' phase to return #t.
2019-01-15 10:49:18 +01:00
104e1d55c7
gnu: prosody: Update to 0.11.2.
...
* gnu/packages/messaging.scm (prosody): Update to 0.11.2.
2019-01-15 10:49:18 +01:00
38f18309e1
gnu: youtube-dl: Update to 2019.01.10.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.10.
[source]: Update uri.
2019-01-15 09:42:17 +02:00
e98c354d1a
gnu: guile-ssh: Use 'git-fetch'.
...
* gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
2019-01-14 23:43:49 +01:00
a8b0556ea1
gnu: libssh: Update to 0.8.6.
...
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.8.6.
[source](patches): Remove.
[arguments]: Add #:phases.
(guile-ssh)[source](modules, snippet]: New fields.
2019-01-14 23:43:49 +01:00
152d4076a4
gnu: guile-json: Add 3.1.0.
...
* gnu/packages/guile.scm (guile-json-3): New variable.
2019-01-14 23:43:49 +01:00
21b41a79fe
gnu: Move Perl compression packages to new module.
...
* gnu/packages/compression.scm (perl-compress-raw-bzip2,
perl-compress-raw-zlib, perl-io-compress, perl-archive-zip,
perl-archive-extract): Move from here...
* gnu/packages/perl-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm:
Adjust references.
2019-01-14 18:12:54 +01:00
b80ecc5a63
gnu: texlive-latex-fontspec: Propagate l3packages.
...
* gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove
texlive-latex-l3kernel.
[propagated-inputs]: Add texlive-latex-l3packages.
2019-01-14 15:42:32 +01:00
2fea7041a3
gnu: texlive-latex-l3packages: Propagate l3kernel.
...
* gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move
texlive-latex-l3kernel from here...
[propagated-inputs]: ...to here.
2019-01-14 15:39:22 +01:00
73635e3f69
gnu: Add texlive-latex-changepage.
...
* gnu/packages/tex.scm (texlive-latex-changepage): New variable.
2019-01-14 14:13:21 +01:00
6309d21579
gnu: Add texlive-generic-babel-german.
...
* gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
2019-01-14 14:13:21 +01:00
d68c8017f1
gnu: texlive-latex-base: Install configuration files.
...
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all
configuration files.
[native-inputs]: Move texlive-generic-hyph-utf8 from here...
[propagated-inputs]: ...to here.
2019-01-14 14:13:21 +01:00
6c56e9c493
gnu: opencv: Use 'git-fetch'.
...
* gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'.
[native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib.
Remove unzip.
[arguments]: Update custom 'unpack-submodule-sources accordingly. Update
paths in configure-flags, 'diable-broken-tests phase.
2019-01-14 15:07:42 +02:00
7b28210531
gnu: python-django-filter: Use 'invoke'.
...
* gnu/packages/django.scm (python-django-filter)[arguments]: Use
'invoke'.
2019-01-14 15:07:42 +02:00
8e21fa0bd3
gnu: opencv: Loosen test suite failures.
...
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch
to opencv-contrib.
[arguments]: Update 'unpack-submodule-sources phase.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-14 15:07:42 +02:00
fdeb2def6a
gnu: opencv: Update configure flags.
...
* gnu/packages/image-processing.scm (opencv)[arguments]: Don't use
precompiled headers. Enable all available CPU optimizations.
2019-01-14 15:07:42 +02:00
b5baf9529e
gnu: opencv: Don't hardcode build directories.
...
* gnu/packages/image-processing.scm (opencv)[arguments]: Change
OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd'
instead of hardcoding the build path.
2019-01-14 15:07:41 +02:00
6949f45c10
gnu: opencv: Fix building on non-x86_64 systems.
...
* gnu/packages/image-processing.scm (opencv)[arguments]: Add
configure-flag to disable carotene. Don't require x86_64 CPU
except on x86_64. Fix typo.
2019-01-14 15:07:41 +02:00
c5c42f0a9c
gnu: gnurl: Update to 7.63.0.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
2019-01-14 13:57:49 +02:00
6e46be066a
gnu: emacs-pass: Update to 1.8.
...
* gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
2019-01-14 12:33:46 +01:00
478040d4fb
gnu: dosbox: Update to 0.74-2.
...
* gnu/packages/emulators.scm (dosbox): Update to 0.74-2.
[arguments]: Use invoke in 'autogen.sh phase.
2019-01-14 09:08:04 +01:00
72b308364f
gnu: linux-libre: Update to 4.20.2.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2.
(%linux-libre-hash): Update hash.
2019-01-14 01:29:47 -05:00
8fa75a2266
gnu: linux-libre@4.19: Update to 4.19.15.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15.
(%linux-libre-4.19-hash): Update hash.
2019-01-14 01:28:02 -05:00
8b2aabd9d9
gnu: linux-libre@4.14: Update to 4.14.93.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93.
(%linux-libre-4.14-hash): Update hash.
2019-01-14 01:26:21 -05:00
e724e1543a
gnu: linux-libre@4.9: Update to 4.9.150.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
2019-01-14 01:25:28 -05:00
0dd2a4f324
gnu: linux-libre@4.4: Update to 4.4.170.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
2019-01-14 01:24:40 -05:00
64d25f0be2
gnu: Add ocaml-merlin.
...
* gnu/packages/ocaml.scm (ocaml-merlin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
cc353cc067
gnu: Add emacs-tldr.
...
* gnu/packages/emacs.scm (emacs-tldr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
5144df2c6c
system: Add sudoedit to %setuid-programs.
...
* gnu/system.scm (%setuid-programs): Add sudoedit.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
24a23bea20
gnu: Add python-miniboa.
...
python2-miniboa is required for the linkchecker testsuite.
* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
2019-01-13 20:47:40 +00:00
c4aa1ebc81
gnu: python-pillow: Update to 5.4.1.
...
I'm looking at this, as this release fixes an issue with the Django testsuite:
https://github.com/python-pillow/Pillow/pull/3525
* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
2019-01-13 17:09:52 +00:00
14bba460ab
gnu: r-biocgenerics: Move to bioconductor.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
2019-01-13 13:04:18 +01:00
7097c7009d
gnu: r-annotate: Move to bioconductor.
...
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
2019-01-13 13:04:18 +01:00
c80fb90f4a
gnu: r-vegan: Move from bioinformatics to cran.
...
* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
2019-01-13 13:04:18 +01:00
d691e96657
gnu: conda: Use 'invoke'.
...
* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
2019-01-13 12:44:03 +02:00
675e7bba3e
gnu: python-conda: All phases return #t.
...
* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
2019-01-13 12:44:03 +02:00
e227f248a6
gnu: python-conda: Fix test suite.
...
* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
2019-01-13 12:44:00 +02:00
82acd43cbd
gnu: Add r-raster.
...
* gnu/packages/cran.scm (r-raster): New variable.
2019-01-13 11:14:44 +01:00
104e7c3c92
gnu: r-ggformula: Update to 0.9.1.
...
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
2019-01-13 11:14:43 +01:00
3fe45dda0a
gnu: r-tibble: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
2019-01-13 11:14:43 +01:00
523762e332
gnu: r-psych: Update to 1.8.12.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
2019-01-13 11:14:43 +01:00
d5fa25a5a0
gnu: bitshuffle: Fix build on armhf-linux.
...
* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
2019-01-13 11:31:04 +02:00
15d2cebf45
gnu: wine-staging: Update to 4.0-rc6.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
2019-01-13 10:14:49 +01:00
c8d8925647
gnu: Sort package module references in (gnu packages graphviz).
...
* gnu/packages/graphviz.scm: Sort package module references; delete
duplicates.
2019-01-13 10:07:06 +01:00
8b1c0dab45
gnu: Add python-pygraphviz.
...
* gnu/packages/graphviz.scm (python-pygraphviz): New variable.
2019-01-13 10:07:06 +01:00
9e7f55de45
gnu: Add python-doctest-ignore-unicode.
...
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
2019-01-13 10:07:06 +01:00
c016e390bf
gnu: Add graphviz-2.38.
...
* gnu/packages/graphviz.scm (graphviz-2.38): New variable.
2019-01-13 10:07:06 +01:00
1710ffa4c7
gnu: sudo: Update to 1.8.27.
...
* gnu/packages/admin.scm (sudo): Update to 1.8.27.
2019-01-13 01:25:18 +01:00
cb3e055f86
gnu: libassuan: Update to 2.5.2.
...
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
2019-01-13 01:25:17 +01:00
66470a5ad0
gnu: libgxps: Update to 0.3.1.
...
* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
2019-01-13 01:25:17 +01:00
ad55c19211
gnu: libqmi: Update to 1.22.0.
...
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
2019-01-13 01:25:17 +01:00
de261ace27
gnu: libmbim: Update to 1.18.0.
...
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
2019-01-13 01:25:17 +01:00
8bcae1e60c
gnu: libsodium: Update to 1.0.17.
...
* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
2019-01-13 01:25:17 +01:00
0b014776c9
gnu: exempi: Update to 2.5.0.
...
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
2019-01-13 01:25:17 +01:00
00262db23a
gnu: seabios: Update to 1.12.0.
...
* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
2019-01-13 01:25:17 +01:00
b2e765de4c
gnu: httpd: Update to 2.4.37.
...
* gnu/packages/web.scm (httpd): Update to 2.4.37.
2019-01-13 01:25:17 +01:00
1d7fbe0947
gnu: nasm: Update license.
...
* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
2019-01-13 01:25:16 +01:00
80459f5a21
gnu: nasm: Update home page.
...
* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
2019-01-13 01:25:16 +01:00
9f1448b74a
gnu: libgphoto2: Update to 2.5.22.
...
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
2019-01-13 01:25:16 +01:00
ef61969c52
gnu: re2: Update to 2019-01-01.
...
* gnu/packages/regex.scm (re2): Update to 2019-01-01.
2019-01-13 01:25:16 +01:00
c06ef010e3
gnu: libsecret: Update to 0.18.7.
...
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
[native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
2019-01-13 01:25:16 +01:00
48d5818a0e
gnu: fluidsynth: Update to 2.0.3.
...
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
2019-01-13 01:25:16 +01:00
bf135622bd
gnu: rofi: Update to 1.5.2.
...
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
2019-01-13 01:25:16 +01:00
2bb187c484
gnu: xscreensaver: Update to 5.42.
...
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42.
[arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
2019-01-13 01:25:16 +01:00
0c4cee13b2
gnu: libcmis: Update to 0.5.2.
...
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2.
[source](uri): Use XZ-compressed tarball.
[arguments]: Remove #:phases. Don't pass "--disable-werror" in #:configure-flags.
2019-01-13 01:25:15 +01:00
48a51af9d2
gnu: http-parser: Update to 2.9.0.
...
* gnu/packages/web.scm (http-parser): Update to 2.9.0.
2019-01-13 01:25:15 +01:00
304db09257
gnu: http-parser: Download from git.
...
* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
2019-01-13 01:25:15 +01:00
9c2094785d
gnu: libetonyek: Adjust inputs.
...
* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG.
Move GLM and MDDS to ...
[inputs]: ... here.
[propagated-inputs]: Add LIBLANGTAG and ZLIB.
2019-01-13 01:25:15 +01:00
7c3acfcb69
gnu: libetonyek: Update to 0.1.9.
...
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9.
[arguments]: Remove #:phases.
2019-01-13 01:25:15 +01:00
b1d2e0b4e0
gnu: libcdr: Update to 0.1.5.
...
* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5.
[source](uri): Download over HTTPS.
[arguments]: Remove.
2019-01-13 01:25:15 +01:00
5b9c2690af
gnu: tintin++: Update to 2.01.5.
...
* gnu/packages/games.scm (tintin++): Update to 2.01.5.
2019-01-12 18:37:38 -05:00
c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
2019-01-12 23:35:19 +01:00
c86fc96987
gnu: r-inspect: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
2019-01-12 23:35:19 +01:00
d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
2019-01-12 23:35:19 +01:00
cad6fb2dec
gnu: Add r-plgem.
...
* gnu/packages/bioconductor.scm (r-plgem): New variable.
2019-01-12 23:35:19 +01:00
45dcd7dcfd
gnu: r-rots: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
0b469ee225
gnu: r-glimma: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
7f2b1c4af0
gnu: r-goseq: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
add2b19561
gnu: r-chippeakanno: Update to 3.16.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
2019-01-12 23:35:18 +01:00
c476edc2cd
gnu: r-rtracklayer: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.1.
2019-01-12 23:35:18 +01:00
1e107b0960
gnu: r-scater: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
0f268bb275
gnu: r-singlecellexperiment: Update to 1.4.1.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.1.
2019-01-12 23:35:18 +01:00
a0224bd4f6
gnu: r-rhdf5lib: Update to 1.4.2.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.2.
2019-01-12 23:35:18 +01:00
40561d0249
gnu: r-hdf5array: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
ad10b3979d
gnu: r-qvalue: Update to 2.14.1.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.1.
2019-01-12 23:35:18 +01:00
19cacb5a2d
gnu: r-gviz: Update to 1.26.4.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.4.
2019-01-12 23:35:18 +01:00
c80595935d
gnu: r-biovizbase: Update to 1.30.1.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.1.
2019-01-12 23:35:18 +01:00
27194effd7
gnu: r-ensembldb: Update to 2.6.3.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.3.
2019-01-12 23:35:18 +01:00
43931ff72f
gnu: r-dirichletmultinomial: Update to 1.24.1.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.1.
2019-01-12 23:35:18 +01:00
15d89fe9f8
gnu: r-gage: Update to 2.32.1.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.1.
2019-01-12 23:35:18 +01:00
4615cf9f1a
gnu: r-annotationhub: Update to 2.14.2.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.2.
2019-01-12 23:35:18 +01:00
ab4a862ab8
gnu: r-edaseq: Update to 2.16.3.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.3.
[propagated-inputs]: Add r-biocmanager.
2019-01-12 23:35:18 +01:00
3bdc41b352
gnu: r-deseq: Update to 1.34.1.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
9abf344f8b
gnu: r-msnid: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.1.
2019-01-12 23:35:17 +01:00
880ed11e9f
gnu: r-msnbase: Update to 2.8.3.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.3.
2019-01-12 23:35:17 +01:00
6451af78e1
gnu: r-mzid: Update to 1.20.1.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.1.
2019-01-12 23:35:17 +01:00
a4f038dc97
gnu: r-mzr: Update to 2.16.1.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.1.
2019-01-12 23:35:17 +01:00
46508c3a92
gnu: r-sva: Update to 3.30.1.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.1.
2019-01-12 23:35:17 +01:00
c20426ec5c
gnu: r-methylkit: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.1.
2019-01-12 23:35:17 +01:00
5c72ebafeb
gnu: r-copywriter: Update to 2.14.1.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.1.
2019-01-12 23:35:17 +01:00
86162c767e
gnu: r-rhdf5: Update to 2.26.2.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.2.
2019-01-12 23:35:17 +01:00
4c7b9222dd
gnu: r-tximport: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.1.
2019-01-12 23:35:17 +01:00
4bfde52178
gnu: r-genomicalignments: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.1.
2019-01-12 23:35:17 +01:00
1fa12b2f06
gnu: r-biostrings: Update to 2.50.2.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.2.
2019-01-12 23:35:17 +01:00
d4fc834cf7
gnu: r-biocparallel: Update to 1.16.5.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.5.
2019-01-12 23:35:17 +01:00
52c977a05b
gnu: r-limma: Update to 3.38.3.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.3.
2019-01-12 23:35:17 +01:00
3fd48846eb
gnu: r-variantannotation: Update to 1.28.8.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.8.
2019-01-12 23:35:17 +01:00
a619850930
gnu: r-edger: Update to 3.24.3.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.3.
2019-01-12 23:35:17 +01:00
00f105fe20
gnu: r-biocviews: Update to 1.50.10.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.10.
2019-01-12 23:35:16 +01:00
9c1b2b2ae0
gnu: r-systempiper: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.1.
2019-01-12 23:35:16 +01:00
3b8c884285
gnu: r-rbgl: Update to 1.58.1.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.1.
2019-01-12 23:35:16 +01:00
ffe16ef33c
gnu: r-dexseq: Update to 1.28.1.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.1.
2019-01-12 23:35:16 +01:00
f7e95c50b8
gnu: r-deseq2: Update to 1.22.2.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.2.
2019-01-12 23:35:16 +01:00
feb561f721
gnu: r-scran: Update to 1.10.2.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.2.
2019-01-12 23:35:16 +01:00
fd7301676e
gnu: r-sjplot: Update to 2.6.2.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.2.
2019-01-12 23:35:16 +01:00
e45f4a4dab
gnu: r-sjmisc: Update to 2.7.7.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.7.
2019-01-12 23:35:16 +01:00
5e8282a4a0
gnu: r-rmpi: Update to 0.6-9.
...
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.
2019-01-12 23:35:16 +01:00
80c4e75b87
gnu: r-seqminer: Update to 7.1.
...
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 7.1.
2019-01-12 23:35:16 +01:00
3bc0667f3c
gnu: r-bookdown: Update to 0.9.
...
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.9.
2019-01-12 23:35:16 +01:00
c3e5b456be
gnu: r-protviz: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-protviz): Update to 0.4.0.
2019-01-12 23:35:16 +01:00
209e504bb1
gnu: r-ontologyindex: Update to 2.5.
...
* gnu/packages/cran.scm (r-ontologyindex): Update to 2.5.
2019-01-12 23:35:16 +01:00
e041740289
gnu: r-chemometricswithr: Update to 0.1.13.
...
* gnu/packages/cran.scm (r-chemometricswithr): Update to 0.1.13.
2019-01-12 23:35:16 +01:00
9ad5f4ba19
gnu: r-grimport: Update to 0.9-1.1.
...
* gnu/packages/cran.scm (r-grimport): Update to 0.9-1.1.
2019-01-12 23:35:16 +01:00
16d296bbd1
gnu: r-shades: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-shades): Update to 1.3.1.
2019-01-12 23:35:15 +01:00
6eab52e0dd
gnu: r-ggeffects: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-ggeffects): Update to 0.8.0.
2019-01-12 23:35:15 +01:00
de7631b278
gnu: r-slam: Update to 0.1-44.
...
* gnu/packages/cran.scm (r-slam): Update to 0.1-44.
2019-01-12 23:35:15 +01:00
2652e2534f
gnu: r-refgenome: Update to 1.7.3.1.
...
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.3.1.
2019-01-12 23:35:15 +01:00
f0867a0e8b
gnu: r-findpython: Update to 1.0.4.
...
* gnu/packages/cran.scm (r-findpython): Update to 1.0.4.
2019-01-12 23:35:15 +01:00
12502bf4e8
gnu: r-prediction: Update to 0.3.6.1.
...
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.1.
2019-01-12 23:35:15 +01:00
fbd263cd4a
gnu: r-abn: Update to 1.3.
...
* gnu/packages/cran.scm (r-abn): Update to 1.3.
2019-01-12 23:35:15 +01:00
1b1444012b
gnu: r-sjstats: Update to 0.17.3.
...
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.3.
2019-01-12 23:35:15 +01:00
9df469a1d4
gnu: r-emmeans: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.1.
2019-01-12 23:35:15 +01:00
1afe56444e
gnu: r-glmmtmb: Update to 0.2.3.
...
* gnu/packages/cran.scm (r-glmmtmb): Update to 0.2.3.
2019-01-12 23:35:15 +01:00
1417d5f1d5
gnu: r-rio: Update to 0.5.16.
...
* gnu/packages/cran.scm (r-rio): Update to 0.5.16.
2019-01-12 23:35:15 +01:00
962304c31c
gnu: r-arules: Update to 1.6-2.
...
* gnu/packages/cran.scm (r-arules): Update to 1.6-2.
2019-01-12 23:35:15 +01:00
f2fc34f241
gnu: r-fnn: Update to 1.1.2.2.
...
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.2.
2019-01-12 23:35:15 +01:00
f0fe1a5a45
gnu: r-shinyace: Update to 0.3.3.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.3.
2019-01-12 23:35:15 +01:00
5f1f11049f
gnu: r-cubature: Update to 2.0.3.
...
* gnu/packages/cran.scm (r-cubature): Update to 2.0.3.
2019-01-12 23:35:15 +01:00
7abb15f2bb
gnu: r-tseries: Update to 0.10-46.
...
* gnu/packages/cran.scm (r-tseries): Update to 0.10-46.
2019-01-12 23:35:15 +01:00
9d83132757
gnu: r-statnet-common: Update to 4.2.0.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.2.0.
2019-01-12 23:35:14 +01:00
7e9e9c9c46
gnu: r-tinytex: Update to 0.10.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.10.
2019-01-12 23:35:14 +01:00
fc00a1f0fc
gnu: r-pillar: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.3.1.
2019-01-12 23:35:14 +01:00
111516f9d6
gnu: r-gclus: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-gclus): Update to 1.3.2.
2019-01-12 23:35:14 +01:00
ed46a05c75
gnu: r-laeken: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-laeken): Update to 0.5.0.
2019-01-12 23:35:14 +01:00
fc74de42da
gnu: r-ddalpha: Update to 1.3.8.
...
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.8.
2019-01-12 23:35:14 +01:00
221b3b164d
gnu: r-rmysql: Update to 0.10.16.
...
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.16.
2019-01-12 23:35:14 +01:00
1c6d199ee8
gnu: r-mitml: Update to 0.3-7.
...
* gnu/packages/cran.scm (r-mitml): Update to 0.3-7.
2019-01-12 23:35:14 +01:00
5703991841
gnu: r-recipes: Add missing input.
...
* gnu/packages/cran.scm (r-recipes)[propagated-inputs]: Add r-withr.
2019-01-12 23:35:14 +01:00
77f97229c9
gnu: r-dimred: Add missing input.
...
* gnu/packages/cran.scm (r-dimred)[propagated-inputs]: Add r-magrittr.
2019-01-12 23:35:14 +01:00
8f88701491
gnu: r-lava: Update to 1.6.4.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.4.
2019-01-12 23:35:14 +01:00
397dba01c6
gnu: r-powerlaw: Update to 0.70.2.
...
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.2.
2019-01-12 23:35:14 +01:00
72c4987506
gnu: r-circlize: Update to 0.4.5.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.5.
2019-01-12 23:35:14 +01:00
422dea1774
gnu: r-ps: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-ps): Update to 1.3.0.
2019-01-12 23:35:14 +01:00
dcf89cc0cf
gnu: r-haven: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-haven): Update to 2.0.0.
2019-01-12 23:35:14 +01:00
69aad34ae0
gnu: r-feather: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-feather): Update to 0.3.2.
2019-01-12 23:35:13 +01:00
1add168ab5
gnu: r-htmltable: Update to 1.13.1.
...
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.1.
2019-01-12 23:35:13 +01:00
37349c717e
gnu: r-httpuv: Update to 1.4.5.1.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.4.5.1.
2019-01-12 23:35:13 +01:00
0c025a7f79
gnu: r-clipr: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-clipr): Update to 0.5.0.
2019-01-12 23:35:13 +01:00
2e4fc4ac62
gnu: r-caret: Update to 6.0-81.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-81.
2019-01-12 23:35:13 +01:00
aa72d7f7f5
gnu: r-quantreg: Update to 5.38.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.38.
2019-01-12 23:35:13 +01:00
9b7df80b9b
gnu: r-rcppeigen: Update to 0.3.3.5.0.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.5.0.
2019-01-12 23:35:13 +01:00
bcc17f7f11
gnu: r-rrcov: Update to 1.4-7.
...
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-7.
2019-01-12 23:35:13 +01:00
70ee5ab137
gnu: r-cowplot: Update to 0.9.4.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.4.
2019-01-12 23:35:13 +01:00
7213ef07c6
gnu: r-rann: Update to 2.6.1.
...
* gnu/packages/statistics.scm (r-rann): Update to 2.6.1.
2019-01-12 23:35:13 +01:00
2c8594d963
gnu: r-sfsmisc: Update to 1.1-3.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-3.
2019-01-12 23:35:13 +01:00
54ebdf6f74
gnu: r-rmarkdown: Update to 1.11.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.11.
[propagated-inputs]: Remove r-rprojroot.
2019-01-12 23:35:13 +01:00
fb45934202
gnu: r-rstudioapi: Update to 0.9.0.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.9.0.
2019-01-12 23:35:13 +01:00
8f49d99a84
gnu: r-git2r: Update to 0.24.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.24.0.
2019-01-12 23:35:13 +01:00
c12e429348
gnu: r-httr: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-httr): Update to 1.4.0.
2019-01-12 23:35:13 +01:00
02c89c5812
gnu: r-commonmark: Update to 1.7.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.7.
2019-01-12 23:35:12 +01:00
fe8c44502b
gnu: r-checkmate: Update to 1.9.0.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.0.
2019-01-12 23:35:12 +01:00
ca4861c602
gnu: r-backports: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.3.
2019-01-12 23:35:12 +01:00
23347dc353
gnu: r-dbplyr: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.3.0.
2019-01-12 23:35:12 +01:00
f12ed3664d
gnu: r-tibble: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.0.
[propagated-inputs]: Add r-fansi and r-pkgconfig.
2019-01-12 23:35:12 +01:00
c668a95861
gnu: r-rlang: Update to 0.3.1.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.1.
2019-01-12 23:35:12 +01:00
495866a9d7
gnu: r-knitr: Update to 1.21.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.21.
[propagated-inputs]: Add r-xfun.
2019-01-12 23:35:12 +01:00
bf3aded0cf
gnu: r-markdown: Update to 0.9.
...
* gnu/packages/statistics.scm (r-markdown): Update to 0.9.
2019-01-12 23:35:12 +01:00
eae93bd3f2
gnu: r-bh: Update to 1.69.0-1.
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* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1.
2019-01-12 23:35:12 +01:00
b6e27673e6
gnu: r-pheatmap: Update to 1.0.12.
...
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12.
2019-01-12 23:35:12 +01:00
ca2bc7e037
gnu: r-mgcv: Update to 1.8-26.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26.
2019-01-12 23:35:12 +01:00
60f1bce09f
gnu: r-codetools: Update to 0.2-16.
...
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16.
2019-01-12 23:35:12 +01:00
3dbd87f504
gnu: r-class: Update to 7.3-15.
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* gnu/packages/statistics.scm (r-class): Update to 7.3-15.
2019-01-12 23:35:12 +01:00
35cf4874cc
gnu: r-survival: Update to 2.43-3.
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* gnu/packages/statistics.scm (r-survival): Update to 2.43-3.
2019-01-12 23:35:12 +01:00
11a36548d9
gnu: r-argparse: Update to 2.0.0.
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* gnu/packages/cran.scm (r-argparse): Update to 2.0.0.
[propagated-inputs]: Add r-r6; remove r-proto.
2019-01-12 23:35:12 +01:00
527c605598
gnu: r-callr: Update to 3.1.1.
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* gnu/packages/cran.scm (r-callr): Update to 3.1.1.
[propagated-inputs]: Remove r-base64enc.
2019-01-12 23:35:12 +01:00
b140569e18
gnu: r-readxl: Update to 1.2.0.
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* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
2019-01-12 23:35:11 +01:00
0aad198e2b
gnu: r-pracma: Update to 2.2.2.
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* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
2019-01-12 23:35:11 +01:00
44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
2019-01-12 23:35:11 +01:00
0e87bf0177
gnu: r-processx: Update to 3.2.1.
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* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
2019-01-12 23:35:11 +01:00
2766d3436a
gnu: r-sjlabelled: Update to 1.0.16.
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* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
2019-01-12 23:35:11 +01:00
813d9c51e3
gnu: r-broom: Update to 0.5.1.
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* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
2019-01-12 23:35:11 +01:00
25c67ecfc6
gnu: Add r-generics.
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* gnu/packages/cran.scm (r-generics): New variable.
2019-01-12 23:35:11 +01:00
646e1ef059
gnu: r-curl: Update to 3.3.
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* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2019-01-12 23:35:11 +01:00
ef91530362
gnu: r-readr: Update to 1.3.1.
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* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
2019-01-12 23:35:11 +01:00
48102ce123
gnu: r-mvabund: Update to 4.0.1.
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* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
2019-01-12 23:35:11 +01:00
04a18a81ae
gnu: r-writexl: Update to 1.1.
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* gnu/packages/cran.scm (r-writexl): Update to 1.1.
2019-01-12 23:35:11 +01:00
a2315c6702
gnu: r-jsonlite: Update to 1.6.
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* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
2019-01-12 23:35:11 +01:00
ea600ff709
gnu: python-pillow: Update homepage.
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* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
2019-01-12 16:39:26 -05:00
acbf312573
gnu: python-pillow: Update to 5.4.0
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* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
2019-01-12 16:38:36 -05:00
146c6b62bf
gnu: Sort package modules in (gnu packages guile).
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* gnu/packages/guile.scm: Sort list of gnu/packages modules.
2019-01-12 12:14:31 +01:00
7d8baff97b
gnu: impressive: Update to 0.12.0.
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* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
2019-01-12 12:14:31 +01:00
24155bf40d
gnu: Move Java compression packages to new module.
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* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
2019-01-12 12:14:28 +01:00
1704367719
gnu: Add Bochs.
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* gnu/packages/virtualization.scm (bochs): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-11 17:09:20 -05:00
81c64748ba
gnu: Stellarium: Update to 0.18.3.
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* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
2019-01-11 17:07:55 -05:00
1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found.
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* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
2019-01-11 19:48:00 +01:00
e0fa641380
gnu: opendht: Use jsoncpp and restbed.
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* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
2019-01-11 19:48:00 +01:00
362fba83dd
gnu: Add restbed.
...
* gnu/packages/networking.scm (restbed): New variable.
2019-01-11 19:48:00 +01:00
50e1843b3a
gnu: libupnp: Update to 1.6.25.
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* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
2019-01-11 19:48:00 +01:00
46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.
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Using LIBRARY_PATH was introduced in
16b8aff85b
2019-01-11 16:35:52 +01:00
5a26f879c3
Revert "gnu: emacs-ghub: Update to 3.2.0."
...
This change should be applied once we update our magit package.
This reverts commit b96f0e6ff9
2019-01-11 13:32:31 +01:00
88d7101798
gnu: Add emacs-general.
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[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]]
* gnu/packages/emacs.scm (emacs-general): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-11 12:14:38 +01:00
84a2de36a1
services: Deprecate a few more service procedures.
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These procedures were already either undocumented (and de facto
deprecated) or documented as deprecated or redundant.
* gnu/services/base.scm (guix-service, guix-publish-service): Mark as
deprecated.
* gnu/services/mcron.scm (mcron-service): Likewise.
* gnu/services/networking.scm (tor-service): Likewise.
* doc/guix.texi (Scheduled Job Execution): Remove 'mcron-service' and
adjust example.
(Networking Services): Remove 'tor-service'.
* gnu/tests/base.scm (%mcron-os): Use 'mcron-service-type' instead of
'mcron-service'.
* gnu/tests/networking.scm (%tor-os): Use 'tor-service-type' instead of
'tor-service'.
* tests/guix-system.sh: Likewise.
2019-01-11 12:14:38 +01:00
babfd9447d
tests: Nitpick on Docker test.
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This is a followup to 7d8a4eeacc
2019-01-11 12:14:37 +01:00
cb2ad4f508
gnu: wine-staging: Hard-code vulkan loader.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation.
* gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
2019-01-11 11:15:13 +01:00
e7c6bc45ed
gnu: jamm: Remove broken "build" phase.
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* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase.
2019-01-11 06:08:43 +01:00
9757b57f4e
services: docker: Update comment.
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* gnu/services/docker.scm (docker-shepherd-service): Update comment.
2019-01-11 02:53:28 +01:00
adf0b482eb
gnu: gexiv2: Update to 0.10.10.
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* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10.
2019-01-10 18:45:41 -05:00
d4d9a1ece0
gnu: Update texlive packages.
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* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
2019-01-10 22:43:09 +01:00
c954fe6622
gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882].
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* gnu/packages/irc.scm (irssi): Update to 1.1.2.
2019-01-10 16:05:42 -05:00
ffcd282702
gnu: docker: Booby-trap "Command" and "LookPath" calls.
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* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Booby-trap "Command" and "LookPath" calls.
2019-01-10 21:29:53 +01:00
6a6e5d84da
gnu: opendht: Update to 1.8.1.
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* gnu/packages/crypto.scm (opendht): Update to 1.8.1.
[source]: Remove snippet that deletes argon2, which is no longer bundled.
[arguments]: Add "--with-argon2" to use system argon2.
[license]: Update to GPLv3+ following the README and source headers.
2019-01-10 21:09:06 +01:00
6fe6840dab
gnu: Add libsecp256k1.
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* gnu/packages/crypto.scm (libsecp256k1): New variable.
2019-01-10 21:09:06 +01:00
35ac66eec1
gnu: crypto++: Update to 8.0.0.
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* gnu/packages/crypto.scm (crypto++): Update to 8.0.0.
[arguments]: Build shared library.
[arguments]: Generate .pc file.
2019-01-10 21:09:06 +01:00
8b0c174415
services: docker: Use more minimal service requrements.
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* gnu/services/docker.scm (docker-service-type)[requirement]: Add
file-system-/sys/fs/cgroup/blkio, file-system-/sys/fs/cgroup/cpu,
file-system-/sys/fs/cgroup/cpuset, file-system-/sys/fs/cgroup/devices,
file-system-/sys/fs/cgroup/memory. Remove elogind.
2019-01-10 19:17:49 +01:00
d3a0e74d6a
services: docker: Clarify service-extension shepherd-root-service-type.
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* gnu/services/docker.scm (docker-service-type)[extensions]: Clarify
service-extension shepherd-root-service-type.
2019-01-10 19:17:48 +01:00
dbd346ae88
gnu: sct: Correct license.
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* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:23 +01:00
65a67bf711
services: Use 'define-deprecated' for service procedures.
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* gnu/services/base.scm (urandom-seed-service, gpm-service): Define
using 'define-deprecated'.
* gnu/services/messaging.scm (bitlbee-service): Likewise.
* gnu/services/networking.scm (dhcp-client-service): Likewise.
(ntp-service): Likewise.
* gnu/services/xorg.scm (slim-service): Likewise.
(gdm-service): Likewise.
2019-01-10 14:59:23 +01:00
7d4b3e1e2b
gnu: Add pwsafe
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* gnu/packages/password-utils.scm (pwsafe): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:22 +01:00
01b3625df6
services: gdm: Add default value.
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* gnu/services/xorg.scm (<gdm-configuration>)[x-server]: Add default
value.
(gdm-service-type)[default-value, description]: New fields.
(gdm-service): Mark as deprecated.
2019-01-10 14:59:22 +01:00
394207c1ee
gnu: Add missing copyright line.
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* gnu/packages/video.scm: Add missing copyright line for commit 20b4aa6
2019-01-10 08:59:44 +01:00
1d591432c7
gnu: wlstream: Fix indentation.
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* gnu/packages/video.scm (wlstream): Fix indentation.
2019-01-10 08:53:36 +01:00
20b4aa6bab
gnu: Add wlstream.
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* gnu/packages/video.scm (wlstream): New variable.
2019-01-10 08:41:03 +01:00
1f61cc102e
gnu: ffmpeg: Add libdrm support.
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* gnu/packages/video.scm (ffmpeg): Add libdrm support.
2019-01-10 08:20:39 +01:00
6b6a25d4d2
gnu: docker: Fix more paths.
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* gnu/packages/docker.scm (docker)[inputs]: Add dbus, git.
[arguments]<#:phases>[patch-paths]: Use them.
2019-01-10 05:40:53 +01:00
f946a370ed
services: docker: Depend on elogind.
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* gnu/services/docker.scm (docker-shepherd-service)[requirement]: Add elogind.
2019-01-10 05:15:42 +01:00
dc4b4a38fa
tests: docker: Fix test.
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* gnu/tests/docker.scm (run-docker-test): Set memory and disk size.
(%docker-os): Add elogind service.
2019-01-10 05:15:41 +01:00
60893e5c84
gnu: linux-libre: Update to 4.20.1.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.1.
(%linux-libre-hash): Update hash.
2019-01-09 23:00:07 -05:00
f7ed0b1db5
gnu: linux-libre@4.19: Update to 4.19.14.
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* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.14.
(%linux-libre-4.19-hash): Update hash.
2019-01-09 23:00:05 -05:00
166c6ad39c
gnu: linux-libre@4.14: Update to 4.14.92.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.92.
(%linux-libre-4.14-hash): Update hash.
2019-01-09 23:00:03 -05:00
c37f52e3be
gnu: linux-libre@4.9: Update to 4.9.149.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.149.
2019-01-09 23:00:00 -05:00
28f6b27543
gnu: linux-libre: Enable pressure stall information.
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* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Enable CONFIG_PSI.
2019-01-09 22:59:58 -05:00
8cd958608c
gnu: docker: Disable tests requiring elevated permissions.
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* gnu/packages/docker.scm (docker)[arguments]<#:phases>[delete-failing-tests]:
Disable tests requiring elevated permissions.
2019-01-10 04:46:29 +01:00
8b487bf84f
gnu: containerd: Fix more paths.
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* gnu/packages/docker.scm (containerd)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:34:57 +01:00
58adcaa19f
gnu: docker: Fix more paths.
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* gnu/packages/docker.scm (docker)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:33:47 +01:00
f0bfd0fc21
services: docker: Specify log file for containerd.
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* gnu/services/docker.scm (containerd-shepherd-service): Specify log file
for containerd.
2019-01-10 03:54:28 +01:00
7d8a4eeacc
tests: Add Docker system test.
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* gnu/tests/docker.scm: New file.
2019-01-10 03:44:20 +01:00
65a7e35cb5
gnu: docker: Substitute LookPath of literals generally.
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* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Substitute LookPath of literals generally.
2019-01-10 03:12:32 +01:00
e9b316453e
gnu: Add docker-cli.
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* gnu/packages/docker.scm (docker-cli): New variable.
2019-01-10 03:01:12 +01:00
8af4c335e3
services: Add docker.
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* gnu/services/docker.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Miscellaneous Services): Document the service.
2019-01-10 03:00:55 +01:00
f87ea24a82
gnu: Add docker.
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* gnu/packages/docker.scm (docker): New variable.
* gnu/packages/patches/docker-engine-test-noinstall.patch: New file.
* gnu/packages/patches/docker-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-01-10 02:49:14 +01:00
Clément Lassieur