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Author SHA1 Message Date
Fis Trivial 112c2c010b
gnu: Add lightgbm. 
* gnu/packages/machine-learning.scm (lightgbm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-14 23:34:59 +02:00
Ludovic Courtès baed923682
self: Add 'guix-daemon' to the result. 
* gnu/packages/package-management.scm (guix-daemon): New variable.
* guix/self.scm (whole-package): Add #:daemon and honor it.
(compiled-guix): Pass #:daemon to 'whole-package'.
 2018-06-14 23:34:59 +02:00
Gábor Boskovits 0effadcad5
gnu: libressl: Update to 2.7.4 [fixes CVE-2018-{0495,0732}]. 
* gnu/packages/tls.scm (libressl): Update to 2.7.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-06-14 17:11:17 -04:00
Leo Famulari e3173fe18e
gnu: botan: Update to 2.6.0 [fixes CVE-2018-{9127,9860}]. 
* gnu/packages/crypto.scm (botan): Update to 2.6.0.
 2018-06-14 16:02:52 -04:00
Leo Famulari a4bae9af00
gnu: vdirsyncer: Update to 0.6.6. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.6.6.
[arguments]: Simplify the man-page building.
 2018-06-14 15:51:57 -04:00
Leo Famulari 44d1b9569b
gnu: python-click-log: Update to 0.3.2. 
* gnu/packages/python.scm (python-click-log): Update to 0.3.2.
 2018-06-14 15:51:56 -04:00
Leo Famulari b6c675c693
gnu: GnuPG 1.4: Update to 1.4.23. 
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.23.
[source]: Remove patch.
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-06-14 15:35:23 -04:00
Tobias Geerinckx-Rice ef0d765605
gnu: python-freezegun: Update to 0.3.10. 
* gnu/packages/check.scm (python-freezegun): Update to 0.3.10.
 2018-06-14 18:55:52 +02:00
Tobias Geerinckx-Rice 19611b7a0a
gnu: python-freezegun: Return #t from phase. 
* gnu/packages/check.scm (python-freezegun)[arguments]: Substitute
INVOKE for SYSTEM*.
 2018-06-14 18:55:52 +02:00
Tobias Geerinckx-Rice d518261f05
gnu: cppcheck: Update to 1.84. 
* gnu/packages/check.scm (cppcheck): Update to 1.84.
 2018-06-14 18:55:51 +02:00
Tobias Geerinckx-Rice 6dd5f2ea63
gnu: qrencode: Update to 4.0.2. 
* gnu/packages/aidc.scm (qrencode): Update to 4.0.2.
 2018-06-14 18:55:51 +02:00
Tobias Geerinckx-Rice f71619648c
gnu: perl-dbi: Update to 1.641. 
* gnu/packages/databases.scm (perl-dbi): Update to 1.641.
 2018-06-14 18:55:51 +02:00
Tobias Geerinckx-Rice 1ba7a62362
gnu: python-nose-timer: Update to 0.7.2. 
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.2.
[source]: Remove patch...
* gnu/packages/patches/python-nose-timer-drop-ordereddict.patch:
...delete file...
* gnu/local.mk (dist_patch_DATA): ...and remove it.
 2018-06-14 18:55:46 +02:00
Rutger Helling ecbac51a0c
gnu: openrct2: Downgrade to 0.1.1. 
* gnu/packages/games.scm (openrct2): Downgrade to 0.1.1 due to audio not
working on 0.1.2+. Needs fixing before upgrade.
[arguments]: Add "-DDOWNLOAD_TITLE_SEQUENCES=OFF" configure-flag. Remove
'fixgcc7 and 'get-rid-of-errors phases.
[native-inputs]: Remove gcc@7.
 2018-06-14 18:14:30 +02:00
Clément Lassieur 43fa239717
gnu: emacs-password-store: Update to 1.7.2. 
* gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.2.
[propagated-inputs]: Add emacs-with-editor.
 2018-06-14 17:37:04 +02:00
Clément Lassieur ab6f400531
gnu: password-store: Update to 1.7.2. 
* gnu/packages/password-utils.scm (password-store): Update to 1.7.2.
[source]: Remove 'password-store-gnupg-compat.patch'.
* gnu/packages/patches/password-store-gnupg-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-06-14 17:36:59 +02:00
Ricardo Wurmus f715f102e0
gnu: fio: Update to 3.7. 
* gnu/packages/benchmark.scm (fio): Update to 3.7.
 2018-06-14 15:41:09 +02:00
Ricardo Wurmus 53131eab2d
gnu: Add minimap2. 
* gnu/packages/bioinformatics.scm (minimap2): New variable.
 2018-06-14 13:51:15 +02:00
Ricardo Wurmus ce573b1128
gnu: pigx-bsseq: Update to 0.0.9. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.9.
 2018-06-14 12:56:49 +02:00
Ludovic Courtès ea0a06cee2
Remove 'guix-register' and its traces. 
* Makefile.am (SH_TESTS): Remove tests/guix-register.sh.
* build-aux/pre-inst-env.in (GUIX_REGISTER): Remove.
* gnu/build/install.scm (directives): Remove outdated comment.
* gnu/build/vm.scm (root-partition-initializer): Update comment.
* gnu/packages/package-management.scm (guix-register): Remove.
* guix/config.scm.in (%sbindir, %guix-register-program): Remove.
* guix/scripts/system.scm (install): Adjust docstring.
* guix/self.scm (make-config.scm): Remove #:guix.  Do not generate
%sbindir and %guix-register-program.
(specification->package): Remove "guix".
* nix/guix-register/guix-register.cc: Remove.
* nix/libstore/store-api.cc (decodeValidPathInfo): Remove.
* nix/libstore/store-api.hh (decodeValidPathInfo): Remove declaration.
* nix/local.mk (sbin_PROGRAMS, guix_register_SOURCES)
(guix_register_CPPFLAGS, guix_register_LDFLAGS): Remove.
* tests/guix-register.sh: Remove.
 2018-06-14 11:17:00 +02:00
Ludovic Courtès eb9fe97495
database: Allow for deterministic database construction. 
Fixes <https://bugs.gnu.org/21073>.

* guix/store/database.scm (sqlite-register): Add #:time.
(%epoch): New variable.
(register-items): Add #:registration-time.  Pass #:time to
'sqlite-register'.
* gnu/build/install.scm (register-closure): Pass #:registration-time.
 2018-06-14 11:17:00 +02:00
Ludovic Courtès 078c2329c0
install: Use 'reset-timestamps' from (guix store database). 
* gnu/build/install.scm (reset-timestamps): Remove.
* gnu/build/vm.scm: Use 'reset-timestamps' from (guix store database).
 2018-06-14 11:17:00 +02:00
Ludovic Courtès 31a63be878
database: Add 'register-items'. 
* guix/build/store-copy.scm (store-info): Export.
* guix/store/database.scm (register-items): New procedure.
(register-path): Implement in terms of 'register-items'.
* gnu/build/install.scm (register-closure): Use 'register-items' instead
of 'for-each' and 'register-path'.
 2018-06-14 11:17:00 +02:00
Ludovic Courtès c45477d2a1
install: Use (guix store database) instead of 'guix-register'. 
* gnu/build/install.scm (register-closure): Add #:reset-timestamps? and
and #:schema; honor them.  Rewrite in terms of 'register-path'.
(populate-single-profile-directory): Add #:schema and honor it.  Make
/var/guix/profiles and /var/guix/gcroots.
* gnu/build/vm.scm (root-partition-initializer): Pass
 #:reset-timestamps? to 'register-closure'.
* gnu/system/vm.scm (not-config?): New procedure.
(guile-sqlite3&co): New variable.
(expression->derivation-in-linux-vm)[config]: New variable.
[builder]: Use 'with-extensions'.
(iso9660-image)[schema, config]: New variables.
Wrap build expression in 'with-extensions'; add 'sql-schema' call.
Remove GUIX from INPUTS.
(qemu-image)[schema, config]: New variables.
Wrap body in 'with-extensions'.
(system-docker-image)[not-config?]: Remove.
[config]: Use 'make-config.scm'.
[schema]: New variable.
[build]: Use 'with-extensions'.  Add call to 'sql-schema'.  Remove GUIX
from INPUTS.
* gnu/system/file-systems.scm (%store-prefix): Check whether
'%store-prefix' is defined.
* guix/scripts/pack.scm (self-contained-tarball)[not-config?]
[libgcrypt, schema]: New variables.
[build]: Wrap in 'with-extensions'.  Adjust imported module list to use
'make-config.scm' for (guix config).
 2018-06-14 11:16:59 +02:00
Ludovic Courtès be43c08b17
vm: 'expression->derivation-in-linux-vm' code can now use dlopen. 
* gnu/system/vm.scm (expression->derivation-in-linux-vm)
[user-builder]: Define in non-monadic style as 'program-file'.
[loader]: Likewise, and 'execl' USER-BUILDER instead of loading it.
(system-docker-image): Pass BUILD as the second
argument to 'expression->derivation-in-linux-vm'.
(make-iso9660-image, qemu-image): Remove call to 'reboot'.
 2018-06-14 11:16:59 +02:00
Ludovic Courtès c5a2e1ffcb
build: Require Guile-SQLite3. 
The next commits make (sqlite3) an indirect dependency of (gnu build
install), which is itself used by (guix scripts system), hence this new
requirement.

* configure.ac: Error out when $guix_cv_have_recent_guile_sqlite3 is
false.  Remove HAVE_GUILE_SQLITE3 Automake conditional.
* Makefile.am (MODULES, SCM_TESTS): Remove HAVE_GUILE_SQLITE3 conditions.
* doc/guix.texi (Requirements): Add Guile-SQLite3.
* README: Ditto.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-SQLITE3.
[arguments]: In 'wrap-program' phase, take guile-sqlite3 into account.
 2018-06-14 11:16:58 +02:00
Ludovic Courtès 6892f0a247
store-copy: 'read-reference-graph' returns a list of records. 
The previous implementation of 'read-reference-graph' was good enough
for many use cases, but it discarded the graph structure, which is
useful information in some cases.

* guix/build/store-copy.scm (<store-info>): New record type.
(read-reference-graph): Rewrite to return a list of <store-info>.
(closure-size, populate-store): Adjust accordingly.
* gnu/services/base.scm (references-file): Adjust accordingly.
* gnu/system/vm.scm (system-docker-image): Likewise.
* guix/scripts/pack.scm (squashfs-image, docker-image): Likewise.
* tests/gexp.scm ("gexp->derivation #:references-graphs"): Likewise.
 2018-06-14 11:16:58 +02:00
Efraim Flashner 03439df66f
gnu: libgcrypt: Fix CVE-2018-0495. 
* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New package.
 2018-06-14 11:06:48 +03:00
Clément Lassieur 85d79a79e4
gnu: Add python-dns-lexicon. 
* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
 2018-06-14 08:18:06 +02:00
Clément Lassieur b863b50d80
gnu: Add python-pynamecheap. 
* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
 2018-06-14 08:18:02 +02:00
Clément Lassieur f4adbe7405
gnu: Add python-tldextract. 
* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
 2018-06-14 08:17:59 +02:00
Clément Lassieur 0dc572380b
gnu: Add python-requests-file. 
* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
 2018-06-14 08:17:55 +02:00
Arun Isaac 40c1b61aac
gnu: Add tmate. 
* gnu/packages/terminals.scm (tmate): New variable.
 2018-06-14 11:20:31 +05:30
Tobias Geerinckx-Rice 0975ca3fd4
services: tor: Mark end of auto-generated configuration block. 
* gnu/services/networking.scm (tor-configuration->torrc): Clearly
demarcate auto-generated lines.
 2018-06-14 05:21:35 +02:00
Tobias Geerinckx-Rice 0b5c16c07f
Fix typo in (gnu packages gtk) header. 
* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
 2018-06-14 04:30:50 +02:00
Tobias Geerinckx-Rice b262aba733
gnu: python-gnupg: Return #t from phase. 
* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-06-14 04:02:14 +02:00
Tobias Geerinckx-Rice ff76a1e9ca
gnu: python-gnupg: Update to 0.4.3. 
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
 2018-06-14 04:01:21 +02:00
Tobias Geerinckx-Rice 2b78360138
gnu: sssd: Update to 1.16.2. 
* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
 2018-06-14 00:52:30 +02:00
Ricardo Wurmus 844cc1c8f3
gnu: pigx-scrnaseq: Update to 0.0.5. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
 2018-06-13 22:30:55 +02:00
Nicolas Goaziou 4bf474b243
gnu: emacs-orgalist: Update to 1.8. 
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
 2018-06-13 21:38:18 +02:00
Kei Kebreau 935cb931b5
gnu: emacspeak: Update to 48.0. 
* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'.  In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
 2018-06-13 14:44:13 -04:00
Ricardo Wurmus 6ccd88e8cb
gnu: r-factoextra: Fix syntax error. 
* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
 2018-06-13 16:42:29 +02:00
Ricardo Wurmus 13b8dcf589
gnu: r-seurat: Update to 2.3.2. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b2a339e19
gnu: r-s4vectors: Update to 0.18.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b730eba3e
gnu: r-biocviews: Update to 1.48.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus c812f46817
gnu: r-rjson: Update to 0.2.20. 
* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 242ffd6c80
gnu: r-zoo: Update to 1.8-2. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 6221de1879
gnu: r-rmarkdown: Update to 1.10. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d086829d39
gnu: r-highr: Update to 0.7. 
* gnu/packages/statistics.scm (r-highr): Update to 0.7.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 26a53dd957
gnu: r-stringi: Update to 1.2.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 3399dc97fc
gnu: r-munsell: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0357db53c8
gnu: r-rgooglemaps: Update to 1.4.2. 
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1df9a0cf47
gnu: r-reticulate: Update to 1.8. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus fa7236f1b3
gnu: r-later: Update to 0.7.3. 
* gnu/packages/cran.scm (r-later): Update to 0.7.3.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 36dc359186
gnu: r-radiant-data: Update to 0.9.5. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 014818b691
gnu: r-cubature: Update to 1.3-13. 
* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 8d2f8aeddf
gnu: r-extradistr: Update to 1.8.9. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1268a995da
gnu: r-statnet-common: Update to 4.1.2. 
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 2bce7795c1
gnu: r-stringdist: Update to 0.9.5.1. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d0396c8ea1
gnu: r-rcpproll: Update to 0.3.0. 
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus a151f1e60a
gnu: r-extremes: Update to 2.0-9. 
* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus d87130cb2e
gnu: r-sp: Update to 1.3-1. 
* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5fa9be1118
gnu: r-getoptlong: Update to 0.1.7. 
* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 7b60ab3df7
gnu: r-circlize: Update to 0.4.4. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 693b4d0ba5
gnu: r-globaloptions: Update to 0.1.0. 
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 846325a8d8
gnu: Add r-writexl. 
* gnu/packages/cran.scm (r-writexl): New variable.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 546fc4aa55
gnu: Add r-hdf5r. 
* gnu/packages/cran.scm (r-hdf5r): New variable.
 2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0c9868aa5b
gnu: Add r-nbclust. 
* gnu/packages/cran.scm (r-nbclust): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus f22bfee945
gnu: Add r-factoextra. 
* gnu/packages/cran.scm (r-factoextra): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus e83841a296
gnu: Add r-factominer. 
* gnu/packages/cran.scm (r-factominer): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus cbf6017d83
gnu: Add r-flashclust. 
* gnu/packages/cran.scm (r-flashclust): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 141e43bd4e
gnu: Add r-ellipse. 
* gnu/packages/cran.scm (r-ellipse): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5cbaaee83f
gnu: Add r-ggpubr. 
* gnu/packages/cran.scm (r-ggpubr): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5219c5c585
gnu: Add r-ggsignif. 
* gnu/packages/cran.scm (r-ggsignif): New variable.
 2018-06-13 11:51:28 +02:00
Ricardo Wurmus 85df1a8631
gnu: Add r-ggsci. 
* gnu/packages/cran.scm (r-ggsci): New variable.
 2018-06-13 11:51:28 +02:00
Rutger Helling 0c6ade0be6
gnu: openrct2: Update to 0.2.0. 
* gnu/packages/games.scm (openrct2-title-sequences): New variable.
* gnu/packages/games.scm (openrct2-objects): New variable.
* gnu/packages/games.scm (openrct2): Update to 0.2.0.
[arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and
'get-rid-of-errors.
[inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences.
[native-inputs]: Add gcc@7.
 2018-06-13 11:33:03 +02:00
Clément Lassieur c24b15472b
tests: Honor the return value of 'start-service'. 
Since commit dc7b3e5633, 'start-service' returns
the Shepherd's representation of the service as a sexp, and '#f' if the
service fails to start.  Also, it doesn't throw an exception when the service
fails to start, so relying on an exception instead of relying on its return
value is a false positive.

* gnu/tests/base.scm (run-nss-mdns-test): Split tests so to check the return
value of 'start-service'.
(run-mcron-test, run-nss-mdns-test): Use 'test-assert' with the return value
of 'start-service'.
* gnu/tests/admin.scm (run-tailon-test): Idem.
* gnu/tests/dict.scm (run-dicod-test): Idem.
* gnu/tests/mail.scm (run-opensmtpd-test, run-exim-test, run-dovecot-test):
Idem.
* gnu/tests/messaging.scm (run-xmpp-test, run-bitlbee-test): Idem.
* gnu/tests/nfs.scm (run-nfs-test): Idem.
* gnu/tests/rsync.scm (run-rsync-test): Idem.
* gnu/tests/ssh.scm (run-ssh-test): Idem.
* gnu/tests/version-control.scm (run-cgit-test, run-git-http-test): Idem.
* gnu/tests/web.scm (run-php-fpm-test): Idem.
 2018-06-13 09:11:45 +02:00
Rutger Helling 14618a1ebb
gnu: vkquake: Update to 1.00.0. 
* gnu/packages/games.scm (vkquake): Update to 1.00.0.
 2018-06-13 08:47:14 +02:00
Rutger Helling 4b3480d62f
gnu: cheese: Update to 3.28.0. 
* gnu/packages/gnome.scm (cheese): Update to 3.28.0.
 2018-06-13 08:44:02 +02:00
Leo Famulari 3a30ae05ae
gnu: openimageio: Update to 1.7.19. 
* gnu/packages/graphics.scm (openimageio): Update to 1.7.19.
 2018-06-13 00:31:58 -04:00
Tobias Geerinckx-Rice 502a822dfd
gnu: tor: Update to 0.3.3.7. 
* gnu/packages/tor.scm (tor): Update to 0.3.3.7.
 2018-06-12 22:59:29 +02:00
Hartmut Goebel b5792b9cb8
gnu: Add qtwebglplugin. 
* gnu/packages/qt.scm (qtwebglplugin): New variable.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
 2018-06-12 22:47:01 +02:00
Hartmut Goebel 359e30c9ea
gnu: Add qtwebview. 
* gnu/packages/qt.scm (qtwebview): New variable.
 2018-06-12 22:47:01 +02:00
Christopher Baines 25e071ead9
services: nginx: Support extra content in the http block. 
This helpful when adding content to the nginx configuration file, which isn't
supported by the record type used for the configuration.  For example, like
adding proxy_cache_path configuration.

* gnu/packages/web.scm (<nginx-configuration>): Add new extra-content field.
  (nginx-configuration-extra-content): New field accessor.
  (default-nginx-config): Add support for the extra-content field.
* doc/guix.texi (NGINX): Document the new extra-content field.
 2018-06-12 21:18:10 +01:00
Leo Famulari bea07c7f55
gnu: python-llfuse: Update to 1.3.3. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
 2018-06-12 15:30:30 -04:00
Jan Nieuwenhuizen 67cb662a31
gnu: mes: Update to 0.15. 
* gnu/packages/mes.scm (mes): Update to 0.15.
 2018-06-12 19:21:10 +02:00
Efraim Flashner 6921e95ae8
gnu: mame: Fix renaming executable. 
* gnu/packages/emulators.scm (mame)[arguments]: Only rename 'mame64' to
'mame' when 'mame64' exists.
 2018-06-12 19:08:47 +03:00
Mathieu Othacehe a9e7d6564b
gnu: multipath-tools: Fix build. 
(multipath-tools)[arguments]: Pass -n to gzip to avoid timestamp related
warnings causing build failures.
 2018-06-12 16:13:16 +02:00
Ludovic Courtès 8d09bfe218
system: Move ~/.config/guix/current first in PATH and INFOPATH. 
Fixes <https://bugs.gnu.org/31770>.
Reported by iyzsong@member.fsf.org (宋文武).

* gnu/system.scm (operating-system-etc-service)["profile"]: Arrange so
that ~/.config/guix/current comes first in PATH and INFOPATH.
 2018-06-12 15:23:34 +02:00
Ludovic Courtès 90977eb55e
gnu: guile-bytestructures: Update to 1.0.3. 
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.3.
(guile-git)[arguments]: Remove.  The workaround for
<https://github.com/TaylanUB/scheme-bytestructures/issues/30> is no
longer needed.
 2018-06-12 15:23:34 +02:00
Ludovic Courtès b5edc47912
gnu: flann: Fix builds with CMake >= 3.11. 
* gnu/packages/patches/flann-cmake-3.11.patch: New file.
* gnu/packages/maths.scm (flann)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-06-12 15:23:34 +02:00
宋文武 feed5194b1
gnu: python-urwid, python2-urwid: Update to 2.0.1. 
* gnu/packages/python.scm (python-urwid, python2-urwird): Update to 2.0.1.
 2018-06-12 20:51:32 +08:00
Leo Famulari 66266d3290
gnu: borg: Update to 1.1.6. 
* gnu/packages/backup.scm (borg): Update to 1.1.6.
[arguments]: Remove the 'adjust-msgpack-dependency' phase because it has been
adopted upstream.
 2018-06-12 08:28:21 -04:00
Ben Sturmfels e68e4a906f
gnu: fabric: Disable problematic tests. 
Reported by Ricardo Wurmus <rekado@elephly.net> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=26647#8>.

* gnu/packages/admin.scm (fabric): Add custom check phase to disable two tests.
 2018-06-12 19:47:12 +08:00
宋文武 7714a06943
gnu: Add skopeo. 
* gnu/packages/virtualization.scm (skopeo): New variable.
 2018-06-12 19:31:18 +08:00
宋文武 efdaf8def0
gnu: Add umoci. 
* gnu/packages/virtualization.scm (umoci): New variable.
 2018-06-12 19:30:52 +08:00
宋文武 3d39130926
gnu: Add libostree. 
* gnu/packages/package-management.scm (libostree): New variable.
 2018-06-12 19:28:18 +08:00
Efraim Flashner c71cc133ec
gnu: vim-syntastic: Update to 3.9.0. 
* gnu/packages/vim.scm (vim-syntastic): Update to 3.9.0.
[source]: Switch to git checkout.
 2018-06-12 11:16:06 +03:00
Efraim Flashner 261348e20d
gnu: vim-fugitive: Update to 2.3. 
* gnu/packages/vim.scm (vim-fugitive): Update to 2.3.
 2018-06-12 11:16:06 +03:00
Efraim Flashner 35a7e5742f
gnu: vim-airline: Update to 0.9. 
* gnu/packages/vim.scm (vim-airline): Update to 0.9.
[source]: Switch to git checkout.
 2018-06-12 11:16:05 +03:00
Efraim Flashner b37404740e
gnu: speedtest-cli: Update to 2.0.2. 
* gnu/packages/networking.scm (speedtest-cli): Update to 2.0.2.
[source]: Switch to a git checkout.
 2018-06-12 11:16:05 +03:00
Efraim Flashner 5b47ea9462
gnu: font-gnu-unifont: Update to 11.0.01. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.01.
 2018-06-12 11:16:02 +03:00
Rutger Helling 14cb7966ba
gnu: wine-staging: Update to 3.10. 
* gnu/packages/wine.scm (wine-staging): Update to 3.10.
 2018-06-12 10:15:03 +02:00
Rutger Helling 32872458a6
gnu: wine-staging-patchset-data: Update to 3.10. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.10.
 2018-06-12 10:15:03 +02:00
Mark H Weaver 95d9d95a04
gnu: linux-libre: Update to 4.17.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.1.
(%linux-libre-hash): Update hash.
 2018-06-12 02:57:20 -04:00
Mark H Weaver f3ad05efd9
gnu: linux-libre@4.14: Update to 4.14.49. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.49.
(%linux-libre-4.14-hash): Update hash.
 2018-06-12 02:56:19 -04:00
Christopher Baines 2c5f8aad92
gnu: Add emacs-puppet-mode. 
* gnu/packages/emacs.scm (emacs-puppet-mode): New variable.
 2018-06-12 07:49:42 +01:00
Christopher Baines e7a25d2ae7
gnu: elixir: Enable more tests and remove patch. 
Previously, due to issues in the erlang package, many tests would fail, and
the package would also nondeterministically fail to build. This is now
fixed (by patching occurrences of /bin/sh in the erlang package), so all the
tests can be run.

* gnu/packages/elixir.scm (elixir)[source]: Remove patches.
[arguments]: Remove the fix-or-disable-tests phase. Add a new set-home phase
to set the HOME environment variable prior to running the tests.
* gnu/packages/patches/elixir-disable-failing-tests.patch: Delete this file.
* gnu/local.mk: Remove now deleted patch.
 2018-06-12 07:46:18 +01:00
Christopher Baines b5453aa7c3
gnu: erlang: Patch occurrences of /bin/sh in the source. 
Previously, the elixir package would often fail to build, as running :os:cmd
would fail, as /bin/sh doesn't exist when building the elixir package. These
changes fix that issue.

* gnu/packages/erlang.scm (erlang)[arguments]: Add new patch-/bin/sh phase to
replace hardcoded references to /bin/sh with a file in the store.
 2018-06-12 07:44:05 +01:00
Christopher Baines 9b25e1d124
gnu: erlang: Delete the bootstrap phase. 
This fails for the erlang package, as the gnu build system attempts to execute
the bootstrap directory.

* gnu/packages/erlang.scm (erlang)[arguments]: Delete the bootstrap phase.
 2018-06-12 07:43:59 +01:00
Marius Bakke 6321ce42ab
gnu: xf86-video-vmware: Update to 13.3.0. 
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.3.0.
 2018-06-11 23:23:10 +02:00
Marius Bakke 4276b0dc1e
gnu: xf86-input-evdev: Update to 2.10.6. 
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.6.
 2018-06-11 23:15:36 +02:00
Marius Bakke 7b7e30ca29
gnu: xf86-input-synaptics: Update to 1.9.1. 
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.1.
 2018-06-11 23:13:26 +02:00
Marius Bakke 8cfcb6ba2a
gnu: xf86-video-fbdev: Update to 0.5.0. 
* gnu/packages/xorg.scm (xf86-video-fbdev): Update to 0.5.0.
 2018-06-11 23:10:04 +02:00
Ludovic Courtès b19950a184
system: Default .bashrc now sources /etc/bashrc. 
This is a followup to commit 1382bde93c,
which disabled automatic sourcing of /etc/bashrc by interactive shell.
The noticeable effect of the change would be that Bash completion would
only work in login shells.

* gnu/system/shadow.scm (default-skeletons)["bashrc"]: Source
/etc/bashrc.
 2018-06-11 18:23:24 +02:00
Ludovic Courtès b63f6c0192
gnu: python2: Deprecate "python@2". 
* gnu/packages/python.scm (python2-called-python): New variable.
 2018-06-11 18:23:24 +02:00
Rutger Helling 4d65c1c304
gnu: wine-staging: Add vkd3d support. 
* gnu/packages/wine.scm (wine-staging)[inputs]: Add vkd3d.
 2018-06-11 18:22:10 +02:00
Rutger Helling 85c7f29a25
gnu: Add vkd3d. 
* gnu/packages/vulkan.scm (vkd3d): New variable.
 2018-06-11 18:22:10 +02:00
Rutger Helling 7f54065487
gnu: shaderc: Update to be8e087. 
* gnu/packages/vulkan.scm (shaderc): Update to be8e087.
[arguments]: Enable tests.
[inputs]: Add googletest.
 2018-06-11 18:22:10 +02:00
Rutger Helling fcfef82592
gnu: glslang: Update to 32d3ec3. 
* gnu/packages/vulkan.scm (glslang): Update to 32d3ec3.
 2018-06-11 18:22:10 +02:00
Rutger Helling ba10e0b8e1
gnu: spirv-tools: Update to fe2fbee. 
* gnu/packages/vulkan.scm (spirv-tools): Update to fe2fbee.
[arguments]: Disable tests. Remove "-DCMAKE_INSTALL_LIBDIR" configure-flag.
 2018-06-11 18:22:10 +02:00
Rutger Helling c7c86de669
gnu: spirv-headers: Update to 3ce3e49. 
* gnu/packages/vulkan.scm (spirv-headers): Update to 3ce3e49. Use INVOKE.
 2018-06-11 18:22:10 +02:00
Efraim Flashner 6da97043ea
gnu: Add ovmf-arm. 
* gnu/packages/firmware.scm (ovmf-arm): New variable.
 2018-06-11 19:16:23 +03:00
Efraim Flashner cb97be5f83
gnu: Add ovmf-aarch64. 
* gnu/packages/firmware.scm (ovmf-aarch64): New variable.
 2018-06-11 19:16:23 +03:00
Marius Bakke ff3fd83969
gnu: libraw: Update to 0.18.12 [security fixes]. 
* gnu/packages/photo.scm (libraw): Update to 0.18.12.
 2018-06-11 18:08:21 +02:00
Marius Bakke 9526d86141
gnu: libndp: Update to 1.7. 
* gnu/packages/networking.scm (libndp): Update to 1.7.
 2018-06-11 18:05:54 +02:00
Marius Bakke f24cfb6cc3
gnu: webkitgtk: Update to 2.20.3 [security fixes]. 
Fixes CVE-2018-4190, CVE-2018-4199, CVE-2018-4218, CVE-2018-4222,
CVE-2018-4232, CVE-2018-4233, CVE-2018-4246 and CVE-2018-11646.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.3.
 2018-06-11 17:56:56 +02:00
Marius Bakke 6e5a6e641a
gnu: efivar: Update to 36. 
* gnu/packages/linux.scm (efivar): Update to 36.
 2018-06-11 17:54:31 +02:00
Marius Bakke 21a21c20da
gnu: ldb: Delete bundled libraries from the source. 
* gnu/packages/samba.scm (ldb)[source](snippet): New field.
 2018-06-11 17:54:30 +02:00
Marius Bakke 4ee30d6aa2
gnu: ldb: Update to 1.4.0. 
* gnu/packages/samba.scm (ldb): Update to 1.4.0.
[inputs]: Add LMDB.
 2018-06-11 17:54:30 +02:00
Pierre Neidhardt 8bf7f741e9
gnu: Add Add emacs-wgrep-helm. 
* gnu/packages/emacs.scm (emacs-wgrep-helm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 50a1f9264d
gnu: Add emacs-package-lint. 
* gnu/packages/emacs.scm (emacs-package-lint): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 00f3774067
gnu: Add emacs-image+. 
* gnu/packages/emacs.scm (emacs-image+): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt bdfebc4b74
gnu: Add emacs-helm-pass. 
* gnu/packages/emacs.scm (emacs-helm-pass): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 2f3aa1d309
gnu: Add emacs-helm-mu. 
* gnu/packages/emacs.scm (emacs-helm-mu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Pierre Neidhardt 1e75852629
gnu: Add emacs-helm-ls-git. 
* gnu/packages/emacs.scm (emacs-helm-ls-git): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:02 +02:00
Rouby Pierre-Antoine 76a2b27897
gnu: Add go-github-com-spf13-pflag. 
* gnu/packages/golang.scm (go-github-com-spf13-pflag): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine bcb2179085
gnu: Add go-github-com-jonboulle-clockwork. 
* gnu/packages/golang.scm (go-github-com-jonboulle-clockwork): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine e8cdf560b0
gnu: Add go-github-com-gorilla-mux. 
* gnu/packages/golang.scm (go-github-com-gorilla-mux): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-11 15:19:01 +02:00
Tobias Geerinckx-Rice 14299d21f2
gnu: iproute2: Update to 4.17.0. 
* gnu/packages/linux.scm (iproute): Update to 4.17.0.
 2018-06-11 14:08:31 +02:00
Tobias Geerinckx-Rice 41ea698a4b
gnu: libfilezilla: Update to 0.12.3. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.3.
 2018-06-11 14:08:24 +02:00
Oleg Pykhalov e0cc7f669b
gnu: emacs-emacsql: Replace mysql with mariadb input. 
* gnu/packages/emacs.scm (emacs-emacsql)[inputs]: Replace 'mysql' with
'mariadb'.
 2018-06-11 11:47:50 +03:00
Ludovic Courtès 8b3aea9d9e
gnu: guix: Update to 77a1aac. 
* gnu/packages/package-management.scm (guix): Update to 77a1aac.
 2018-06-10 23:32:00 +02:00
宋文武 670a5e5430
gnu: keepalived: Install info documentation. 
* gnu/packages/cluster.scm (keepalived)[arguments]: Add phases 'build-info'
and 'install-info'.
[native-inputs]: Add texinfo.
 2018-06-10 23:42:14 +08:00
宋文武 af09dabf70
gnu: Add keepalived. 
* gnu/packages/cluster.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-06-10 22:57:01 +08:00
宋文武 4dd1fb79f7
gnu: Add libnfnetlink. 
* gnu/packages/linux.scm (libnfnetlink): New variable.
 2018-06-10 22:57:01 +08:00
Danny Milosavljevic fc51c11b9d
gnu: mumble: Fix build with Boost 1.66. 
Fixes <https://bugs.gnu.org/31775>.

* gnu/packages/patches/mumble-1.2.19-abs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/telephony.scm (mumble)[source]: Add it.
 2018-06-10 16:03:35 +02:00
宋文武 e6c8199b66
gnu: nix: Update to 2.0.4. 
* gnu/packages/package-management.scm (nix): Update to 2.0.4.
 2018-06-10 21:38:32 +08:00
Nicolas Goaziou 1bfde769f6
gnu: musescore: Fix build against Qt 5.11. 
* gnu/packages/music.scm (musescore)[arguments]: Remove Webkit support, since
  it is replaced with Qt WebEngine in Qt 5.11.  Add missing include line.
[inputs]: Remove "qtwekbit".
 2018-06-10 13:47:25 +02:00
Alex Vong 09b21b77cc
gnu: heimdal: Update to 7.5.0. 
* gnu/packages/kerberos.scm (heimdal): Update to 7.5.0.
[source]: Update source uri.  Remove patches.
[arguments]: Adjust #:configure-flags and build phases accordingly.
[inputs]: Add sqlite.
[native-inputs]: Add texinfo and unzip.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
  gnu/packages/patches/heimdal-CVE-2017-11103.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
 2018-06-10 16:00:45 +08:00