f69a1d04a1
gnu: Add java-eclipse-jetty-xml.
...
* gnu/packages/web.scm (java-eclipse-jetty-xml): New variable.
2018-06-16 13:17:39 +02:00
c099f6a716
gnu: java-eclipse-jetty-security-9.2: Ignore test error.
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* gnu/packages/web.scm (java-eclipse-jetty-security-9.2)[arguments]:
Ignore one failing test.
2018-06-16 13:17:19 +02:00
901bcb7815
gnu: pigx-chipseq: Update to 0.0.16.
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* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.16.
2018-06-16 12:11:09 +02:00
12e530ba63
gnu: BIND: Fix CVE-2018-5738.
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* gnu/packages/patches/bind-CVE-2018-5738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dns.scm (isc-bind)[source]: Use it.
2018-06-15 16:41:16 -04:00
a7c8716928
gnu: grub: Fix build on i686.
...
Fixes <https://bugs.gnu.org/31380 >.
* gnu/packages/bootloaders.scm (grub)[native-inputs]: Add "ld-wrapper"
and "binutils".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15 16:41:52 +02:00
4ce4fc5010
system: Add os-with-u-boot.
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* gnu/system/install.scm (os-with-u-boot): New procedure.
* gnu/packages/bootloaders.scm (make-u-boot-package): Export.
* doc/guix.texi (Building the Installation Image for ARM Boards): New
subsection.
2018-06-15 14:16:37 +02:00
0017e55f89
gnu: Add shadowsocks.
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* gnu/packages/networking.scm (shadowsocks): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15 10:04:59 +02:00
7b0449712e
hydra: Make sure we add an absolute file name to the load path.
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Previously, under Cuirass, we'd add "build-aux/cuirass/../hydra/../..".
But then, commit c45477d2a1
2018-06-15 10:04:59 +02:00
265048cc89
offload: Fix error message in 'guix offload test'.
...
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>
in <https://bugs.gnu.org/31824 >.
* guix/scripts/offload.scm (assert-node-has-guix): Fix typo in failure
message; add missing argument.
2018-06-15 10:04:59 +02:00
ad21323c96
gnu: cpuid: Update to 20180519.
...
* gnu/packages/linux.scm (cpuid): Update to 20180519.
2018-06-15 09:57:17 +02:00
d41a5f826d
gnu: light: Return #t from phase.
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* gnu/packages/linux.scm (light)[arguments]: End ‘patch-makefile’ phase
with #t.
2018-06-15 09:57:17 +02:00
a756fa5ac0
gnu: light: Update to 1.1.
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* gnu/packages/linux.scm (light): Update to 1.1.
[source]: Switch to GIT-FETCH.
2018-06-15 09:57:17 +02:00
14b0c49670
gnu: f2fs-tools: Update to 1.10.0.
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* gnu/packages/linux.scm (f2fs-tools): Update to 1.10.0.
2018-06-15 09:57:16 +02:00
52d5b73fc4
gnu: spice-protocol: Update to 0.12.14.
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* gnu/packages/spice.scm (spice-protocol): Update to 0.12.14.
2018-06-15 09:57:16 +02:00
0ce92d74a2
gnu: python-pyrfc3339: Update to 1.1.
...
* gnu/packages/time.scm (python-pyrfc3339): Update to 1.1.
2018-06-15 09:57:16 +02:00
5bc4188ffd
gnu: gource: Update to 0.49.
...
* gnu/packages/version-control.scm (gource): Update to 0.49.
2018-06-15 09:57:16 +02:00
d21fb90a27
gnu: perl-xml-libxml-simple: Update to 0.99.
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* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.99.
2018-06-15 09:57:16 +02:00
914c6f621e
gnu: fcitx-configtool: Update to 0.4.10.
...
* gnu/packages/fcitx.scm (fcitx-configtool): Update to 0.4.10.
2018-06-15 09:57:15 +02:00
50ca5fb332
gnu: fcitx: Update to 4.2.9.6.
...
* gnu/packages/fcitx.scm (fcitx): Update to 4.2.9.6.
[native-inputs]: Add extra-cmake-modules.
2018-06-15 09:57:15 +02:00
657bed34f4
gnu: fcitx: Use HTTPS home page.
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* gnu/packages/fcitx.scm (fcitx)[home-page]: Use HTTPS.
2018-06-15 09:57:15 +02:00
26d66a518c
gnu: perl-xml-xpath: Update to 1.42.
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* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.42.
2018-06-15 09:57:15 +02:00
9332d70602
gnu: perl-xml-xpath: Propagate inputs.
...
* gnu/packages/xml.scm (perl-xml-xpath)[inputs]: Rename this...
[propagated-inputs]: ...to this.
2018-06-15 09:57:14 +02:00
50632f0a8d
gnu: perl-xml-atom: Propagate inputs.
...
* gnu/packages/xml.scm (perl-xml-atom)[inputs]: Rename to...
[propagated-inputs]: ...this, and...
[native-inputs]: ...remove duplicate packages from here.
2018-06-15 09:57:14 +02:00
beb2d4be84
gnu: nickle: Update to 2.81.
...
* gnu/packages/nickle.scm (nickle): Update to 2.81.
2018-06-15 09:57:14 +02:00
752ff6e9aa
gnu: r-cubature: Update to 1.4.
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* gnu/packages/cran.scm (r-cubature): Update to 1.4.
2018-06-15 09:57:14 +02:00
abde01f27d
gnu: neofetch: Update to 4.0.2.
...
* gnu/packages/admin.scm (neofetch): Update to 4.0.2.
2018-06-15 09:18:13 +02:00
cf9a29b24c
gnu: Add r-genomicinteractions.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
2018-06-15 09:14:01 +02:00
a32279ffb6
gnu: Add r-interactionset.
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* gnu/packages/bioconductor.scm (r-interactionset): New variable.
2018-06-15 09:14:01 +02:00
056402220e
gnu: innoextract: Update to 1.7.
...
* gnu/packages/compression.scm (innoextract): Update to 1.7.
2018-06-15 09:10:35 +02:00
6ffdfe6a01
gnu: Add r-riboseqr.
...
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
2018-06-15 07:43:23 +02:00
0490f9de88
gnu: Add r-riboprofiling.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
2018-06-15 07:43:22 +02:00
609f4ad12f
gnu: Add r-chipcomp.
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* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
2018-06-15 07:43:22 +02:00
2bece692a6
gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked.
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* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New
variable.
2018-06-15 07:43:22 +02:00
6fbd759b13
gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked.
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New
variable.
2018-06-15 07:43:22 +02:00
dfac7eb917
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked.
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* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked):
New variable.
2018-06-15 07:43:22 +02:00
bb15b581f7
gnu: Add r-bayseq.
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* gnu/packages/bioconductor.scm (r-bayseq): New variable.
2018-06-15 07:43:22 +02:00
b494bbe466
gnu: certbot, python-acme: Update to 0.25.1.
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* gnu/packages/tls.scm (certbot): Update 0.25.1.
(python-acme): Update to 0.25.1.
[native-inputs]: Add python-pytest.
[propagated-inputs]: Add python-requests-toolbelt.
2018-06-14 19:38:56 -04:00
9297fc61cc
gnu: Go 1.10: Update to 1.10.3.
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* gnu/packages/golang.scm (go-1.10): Update to 1.10.3.
2018-06-14 17:49:56 -04:00
96fd9a0e62
gnu: Go 1.9: Update to 1.9.7.
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* gnu/packages/golang.scm (go-1.9): Update to 1.9.7.
2018-06-14 17:49:53 -04:00
411959bef3
linux-initrd: Module check correctly handles hyphen vs. underscore.
...
Fixes <https://bugs.gnu.org/31714 >.
Reported by Vagrant Cascadian <vagrant@debian.org>
and Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Pass
LINUX-MODULES through 'normalize-module-name'.
* gnu/build/linux-modules.scm (normalize-module-name): Export.
2018-06-14 23:34:59 +02:00
a9a685cc00
offload: Gracefully handle invalid results from 'machines.scm'.
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* guix/scripts/offload.scm (build-machines): Check the result of FILE.
Ignore it if it's not a list of <build-machine>.
2018-06-14 23:34:59 +02:00
565af91acc
gnu: emacs-racket-mode: Update and bug fix.
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* gnu/packages/emacs.scm (emacs-racket-mode): Update and bug fix.
- Update to the current commit
- Bug fix: include Racket files in addition to Emacs Lisp files
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
a8fb82a8ab
gnu: Add vowpal-wabbit.
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* gnu/packages/machine-learning.scm (vowpal-wabbit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
112c2c010b
gnu: Add lightgbm.
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* gnu/packages/machine-learning.scm (lightgbm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
baed923682
self: Add 'guix-daemon' to the result.
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* gnu/packages/package-management.scm (guix-daemon): New variable.
* guix/self.scm (whole-package): Add #:daemon and honor it.
(compiled-guix): Pass #:daemon to 'whole-package'.
2018-06-14 23:34:59 +02:00
0effadcad5
gnu: libressl: Update to 2.7.4 [fixes CVE-2018-{0495,0732}].
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* gnu/packages/tls.scm (libressl): Update to 2.7.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-06-14 17:11:17 -04:00
e3173fe18e
gnu: botan: Update to 2.6.0 [fixes CVE-2018-{9127,9860}].
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* gnu/packages/crypto.scm (botan): Update to 2.6.0.
2018-06-14 16:02:52 -04:00
af09bed7dc
guix: ui: Allow translation of dates.
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* guix/ui.scm (display-generation): Allow translation of dates.
The format string will show dates as month day year, but some languages use a
different convention.
2018-06-14 21:53:12 +02:00
a4bae9af00
gnu: vdirsyncer: Update to 0.6.6.
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* gnu/packages/dav.scm (vdirsyncer): Update to 0.6.6.
[arguments]: Simplify the man-page building.
2018-06-14 15:51:57 -04:00
44d1b9569b
gnu: python-click-log: Update to 0.3.2.
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* gnu/packages/python.scm (python-click-log): Update to 0.3.2.
2018-06-14 15:51:56 -04:00
Julien Lepiller