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Author SHA1 Message Date
Oleg Pykhalov e44de1d2fb
services: zabbix-front-end: Show location in messages. 
* gnu/services/monitoring.scm (zabbix-front-end-config): Show location in
messages.
 2019-03-10 21:32:38 +03:00
Oleg Pykhalov d132d9f96b
services: configuration: Add '%location'. 
* gnu/services/configuration.scm (define-configuration): Add '%location'.
 2019-03-10 21:32:38 +03:00
Marius Bakke a4de1a651e
gnu: double-conversion: Update to 3.1.3. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.3.
[source](uri): Adjust for version tag prefix.
 2019-03-10 18:38:51 +01:00
Marius Bakke 55f80e1592
gnu: libvdpau: Update to 1.2. 
* gnu/packages/video.scm (libvdpau): Update to 1.2.
[source](uri): Adjust for new URL.
 2019-03-10 18:38:51 +01:00
Marius Bakke 792737e9ab
gnu: subversion: Update to 1.10.4 [fixes CVE-2018-11803]. 
* gnu/packages/version-control.scm (subversion): Update to 1.10.4.
 2019-03-10 18:38:51 +01:00
Marius Bakke 1c4724634c
gnu: libuninameslist: Update to 20190305. 
* gnu/packages/fontutils.scm (libuninameslist): Update to 20190305.
 2019-03-10 18:38:50 +01:00
Marius Bakke 8c5533b582
Merge branch 'master' into staging 2019-03-10 18:38:25 +01:00
Marius Bakke 41ce92501b
gnu: xfd: Update to 1.1.3. 
* gnu/packages/xorg.scm (xfd): Update to 1.1.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 06e3ed5d19
gnu: xprop: Update to 1.2.4. 
* gnu/packages/xorg.scm (xprop): Update to 1.2.4.
 2019-03-10 18:30:51 +01:00
Marius Bakke df8dbfb30b
gnu: notmuch: Update to 0.28.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 2c0cf9eec7
gnu: xapian: Update to 1.4.11. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.11.
 2019-03-10 18:30:51 +01:00
Marius Bakke 511930c294
gnu: libmspack: Update to 0.10.1. 
* gnu/packages/compression.scm (libmspack): Update to 0.10.1.
 2019-03-10 18:30:50 +01:00
Marius Bakke 755226e9c2
gnu: python-dask: Update to 1.1.4. 
* gnu/packages/python-xyz.scm (python-dask): Update to 1.1.4.
 2019-03-10 18:30:50 +01:00
Marius Bakke f1fff66be5
gnu: elogind: Update to 239.4. 
* gnu/packages/freedesktop.scm (elogind): Update to 239.4.
 2019-03-10 18:30:50 +01:00
Tobias Geerinckx-Rice 6845ab5204
gnu: Import (gnu packages image) in (gnu packages scanner). 
This is a follow-up to commit 10bd2889d2.

* gnu/packages/scanner.scm: #:use-module (gnu packages image).
 2019-03-10 17:12:16 +01:00
Tobias Geerinckx-Rice 10bd2889d2
gnu: sane-backends: Support PNG scanimage output. 
* gnu/packages/scanner.scm (sane-backends)[inputs]: Add libpng.
 2019-03-10 16:33:55 +01:00
Ricardo Wurmus ca32afacf9
gnu: Add btanks. 
* gnu/packages/games.scm (btanks): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus d7764d42e4
gnu: Add libsmpeg-with-sdl1. 
* gnu/packages/video.scm (libsmpeg-with-sdl1): New variable.
(libsmpeg)[version]: Change to 0.4.5-401.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 8ada024ba6
gnu: Add 4dtris. 
* gnu/packages/games.scm (4dtris): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus c06709b8a4
gnu: Add slingshot. 
* gnu/packages/games.scm (slingshot): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 05487ed8e6
gnu: scons: Update to 3.0.4. 
* gnu/packages/python-xyz.scm (scons): Update to 3.0.4.
[arguments]: Remove second instance of "imp.load_module" (bug 34236).
 2019-03-10 14:04:28 +01:00
Tobias Geerinckx-Rice 4eb57ca883
gnu: Add opensmtpd-next. 
* gnu/packages/mail.scm (opensmtpd-next): New public variable.
 2019-03-10 13:37:18 +01:00
Tobias Geerinckx-Rice 380384e419
gnu: ibus: Update Unicode data to 12.0.0. 
* gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for
Unicode data and update hashes.
 2019-03-10 13:37:18 +01:00
Pierre Neidhardt 2b613a1a5d
gnu: hyperledger-fabric: Fix description, set supported system and parallel build. 
* gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase
into something less marketing-ish.
[arguments]: Build with multiple jobs.
[supported-systems]: Support x86_64-linux only.
 2019-03-09 12:30:24 +01:00
Ricardo Wurmus 7d4cab7473
gnu: Add openfst. 
* gnu/packages/machine-learning.scm (openfst): New variable.
 2019-03-09 10:43:37 +01:00
Pierre Neidhardt 983550692d
gnu: Add hyperledger-fabric. 
* gnu/local.mk (hyperledger): New variable.
 2019-03-09 10:15:46 +01:00
Ricardo Wurmus 2b0c755d19
gnu: gnome-shell: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.28.2.
[source]: Update snippet.
[build-system]: Use meson-build-system.
[arguments]: Disable systemd; add build phases "fix-keysdir" and "pre-check";
remove "rebuild-css" phase; remove custom "install" phase; wrap also with
LD_LIBRARY_PATH.
[native-inputs]: Add desktop-file-utils, sassc, and xorg-server.
[inputs]: Remove readline.
 2019-03-09 08:48:25 +01:00
Tobias Geerinckx-Rice 373abfb398
gnu: lynis: Update to 2.7.2. 
* gnu/packages/admin.scm (lynis): Update to 2.7.2.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7b957a3344
gnu: youtube-viewer: Update to "3.5.4. 
* gnu/packages/video.scm (youtube-viewer): Update to "3.5.4.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 37fc44eab9
gnu: dovecot: Avoid unnecessary patching. 
* gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’
patching with custom ‘make install sysconfdir=…’.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice f762e49f28
gnu: dovecot: Indent arguments. 
* gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7969751f54
gnu: i3lock-color: Update to 2.12.c. 
* gnu/packages/wm.scm (i3lock-color): Update to 2.12.c.
[inputs]: Add xcb-util-xrm.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice f45cc966ba
gnu: i3lock-color: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice a48db08afe
gnu: i3lock-fancy: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Ludovic Courtès d429878daf
activation: Shared system home directories are now 555 and root-owned. 
Fixes <https://bugs.gnu.org/34788>.
Reported by Jack Hill <jackhill@jackhill.us>.

Regression introduced by the combination of
8bb76f3d44 and
0ae735bcc8ff7fdc89d67b492bdee9091ee19e86: /var/empty would be 700 and
owned by one of the system accounts (thus inaccessible to others), and
/var/run/dbus would be 700 as well, thereby preventing D-Bus clients
from connecting to the daemon.

* gnu/build/activation.scm (duplicates): New procedure.
(activate-users+groups)[system-accounts]: New variable.
Use it.  Make shared system account home directories #o555 and
root-owned.
* gnu/services/dbus.scm (dbus-activation): Make /var/run/dbus #o755.
* gnu/tests/base.scm (run-basic-test): Test the ownership and
permissions of /var/empty.
 2019-03-08 23:21:59 +01:00
Ricardo Wurmus 74c2339fff
gnu: Add java-eclipse-jdt-compiler-apt. 
* gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable.
 2019-03-08 23:18:56 +01:00
Ricardo Wurmus 8b6acb1f20
gnu: blast+: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-08 23:00:07 +01:00
Ricardo Wurmus f87dcb4d75
gnu: Add texlive-latex-pdfx. 
* gnu/packages/tex.scm (texlive-latex-pdfx): New variable.
 2019-03-08 21:49:25 +01:00
Ricardo Wurmus cafd4d387b
gnu: Add texlive-latex-xmpincl. 
* gnu/packages/tex.scm (texlive-latex-xmpincl): New variable.
 2019-03-08 21:48:19 +01:00
Ricardo Wurmus 847768b9cc
gnu: Add translate2geda. 
* gnu/packages/engineering.scm (translate2geda): New variable.
 2019-03-08 21:45:29 +01:00
Ricardo Wurmus a734da8675
gnu: Add rkrlv2. 
* gnu/packages/music.scm (rkrlv2): New variable.
 2019-03-08 21:02:49 +01:00
Danny Milosavljevic eb6ef893e8
gnu: fc-host-tools: Update to 10. 
* gnu/packages/embedded.scm (fc-host-tools): Update to 10.
[arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX.
 2019-03-08 19:33:04 +01:00
Efraim Flashner 606c198788
gnu: crawl: Find all the included headers. 
* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
change the path for some headers.
 2019-03-08 17:22:29 +02:00
Efraim Flashner b89284407f
gnu: crawl: Don't assume system architecture. 
This allows crawl to build on non-Intel architectures.

* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
remove x86* specific CFLAGS.
 2019-03-08 17:22:29 +02:00
Efraim Flashner fc7d6bc60d
gnu: crawl: Build with python3-wrapper. 
* gnu/packages/games.scm (crawl)[native-inputs replace python with
python-wrapper.
[arguments]: Remove custom 'patch-python phase.
 2019-03-08 17:22:26 +02:00
Vagrant Cascadian fb0aeaacea
gnu: u-boot: Remove openssl input. 
Fixes <https://bugs.gnu.org/34717>.

* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
  (u-boot-tools): Disable FIT_SIGNATURES in tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-08 12:31:37 +01:00
Rutger Helling 75f0bda71a
gnu: flatpak: Add more dependencies. 
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
 2019-03-08 11:50:56 +01:00
Ricardo Wurmus daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
 2019-03-08 09:30:00 +01:00
Ricardo Wurmus 183b6575e7
gnu: r-mzr: Update to 2.16.2. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 6453d7aecc
gnu: r-gviz: Update to 1.26.5. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 101dcc29d3
gnu: r-ensembldb: Update to 2.6.7. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d3713237c5
gnu: r-annotationhub: Update to 2.14.4. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 53e7f028ed
gnu: r-rhtslib: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d493043daf
gnu: r-rtracklayer: Update to 1.42.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 57f40dc220
gnu: r-rsamtools: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 58209b1e21
gnu: r-biocparallel: Update to 1.16.6. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 8972989e10
gnu: r-dexseq: Update to 1.28.2. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
 2019-03-08 09:14:00 +01:00
Tobias Geerinckx-Rice 792d3ed7eb
gnu: man-pages: Update to 5.00. 
* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
 2019-03-08 01:35:42 +01:00
Tobias Geerinckx-Rice 13b1fb5c92
gnu: dovecot: Update to 2.3.5. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
 2019-03-08 01:34:41 +01:00
Tobias Geerinckx-Rice 2fa1a3a808
gnu: dovecot: Don't use NAME in source URI. 
* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
 2019-03-08 01:34:40 +01:00
Ricardo Wurmus 933dad9156
gnu: Add mruby. 
* gnu/packages/ruby.scm (mruby): New variable.
 2019-03-08 00:07:45 +01:00
Ricardo Wurmus 20662a3020
gnu: r-ggmap: Update to 3.0.0. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 8f37f53837
gnu: r-readxl: Update to 1.3.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus f544ab3379
gnu: r-sys: Update to 3.0. 
* gnu/packages/cran.scm (r-sys): Update to 3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 790db519f4
gnu: r-servr: Update to 0.13. 
* gnu/packages/cran.scm (r-servr): Update to 0.13.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus e89d54278d
gnu: r-flextable: Update to 0.5.1. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.1.
[propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and
r-stringr.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus e190d9af6c
gnu: r-proxy: Update to 0.4-23. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-23.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus bef78244de
gnu: r-haven: Update to 2.1.0. 
* gnu/packages/cran.scm (r-haven): Update to 2.1.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 59c513422c
gnu: r-emdbook: Update to 1.3.11. 
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.11.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 937e15571c
gnu: r-rmysql: Update to 0.10.17. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.17.
[native-inputs]: Remove pkg-config.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 2170a36c3b
gnu: r-gower: Update to 0.2.0. 
* gnu/packages/cran.scm (r-gower): Update to 0.2.0.
[native-inputs]: Remove r-knitr.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 6e4a9b8365
gnu: r-ggsignif: Update to 0.5.0. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus 532b359865
gnu: r-jomo: Update to 2.6-7. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-7.
 2019-03-07 23:52:43 +01:00
Ricardo Wurmus d2cd541cc7
gnu: r-mice: Update to 3.4.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.4.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 22777c8657
gnu: r-xfun: Update to 0.5. 
* gnu/packages/cran.scm (r-xfun): Update to 0.5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 87bb1b8c9e
gnu: r-metap: Update to 1.1. 
* gnu/packages/cran.scm (r-metap): Update to 1.1.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus d8787b3387
gnu: r-ifultools: Update to 2.0-5. 
* gnu/packages/cran.scm (r-ifultools): Update to 2.0-5.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus cb40b6eb9b
gnu: r-radiant-data: Update to 0.9.9. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9.
[propagated-inputs]: Add r-stringi; remove r-summarytools.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 00fb320392
gnu: r-later: Update to 0.8.0. 
* gnu/packages/cran.scm (r-later): Update to 0.8.0.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus 8b2c80b8a3
gnu: r-vim: Update to 4.8.0. 
* gnu/packages/cran.scm (r-vim): Update to 4.8.0.
[propagated-inputs]: Add r-ranger.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus b9b1041324
gnu: r-fnn: Update to 1.1.3. 
* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.
 2019-03-07 23:52:42 +01:00
Ricardo Wurmus ea010aa31e
gnu: r-arules: Update to 1.6-3. 
* gnu/packages/cran.scm (r-arules): Update to 1.6-3.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus f5ce1dcce2
gnu: r-zip: Update to 2.0.0. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.0.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus bbe9421174
gnu: r-maptools: Update to 0.9-5. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-5.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus d3f22f0aea
gnu: r-reticulate: Update to 1.11.1. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.11.1.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus fd1a17a522
gnu: r-officer: Update to 0.3.3. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.3.
[propagated-inputs]: Add r-rlang.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 7754557090
gnu: r-prediction: Update to 0.3.6.2. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 3d5bcae0c2
gnu: r-abjutils: Update to 0.2.3. 
* gnu/packages/cran.scm (r-abjutils): Update to 0.2.3.
[propagated-inputs]: Add r-furrr, r-future, r-readr, and r-rlang; remove
r-plyr.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus 1007b1b6d2
gnu: r-slam: Update to 0.1-45. 
* gnu/packages/cran.scm (r-slam): Update to 0.1-45.
 2019-03-07 23:52:41 +01:00
Ricardo Wurmus a431c38166
gnu: r-hash: Update to 2.2.6.1. 
* gnu/packages/cran.scm (r-hash): Update to 2.2.6.1.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus a6a87db8ce
gnu: r-dvmisc: Update to 1.1.3. 
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.3.
[propagated-inputs]: Add r-cubature, r-data-table, r-dplyr, r-ggplot2,
r-mvtnorm, r-pracma, r-purrr, and r-survey.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 5093cbdc04
gnu: r-summarytools: Update to 0.9.2. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.2.
[propagated-inputs]: Add r-checkmate, r-dplyr, r-magick, and r-tidyr.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus b1f39e8c38
gnu: r-multcomp: Update to 1.4-10. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-10.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus e0f861649c
gnu: r-emmeans: Update to 1.3.3. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.3.
[propagated-inputs]: Add r-numderiv.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus e2fee46f04
gnu: r-afex: Update to 0.23-0. 
* gnu/packages/cran.scm (r-afex): Update to 0.23-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus f18ca07eef
gnu: r-lmertest: Update to 3.1-0. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-0.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 91f0b745f6
gnu: r-ks: Update to 1.11.4. 
* gnu/packages/cran.scm (r-ks): Update to 1.11.4.
[propagated-inputs]: Remove r-misc3d.
 2019-03-07 23:52:40 +01:00
Ricardo Wurmus 0b14b100a2
gnu: r-tidytree: Update to 0.2.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 4bc5d45144
gnu: r-bigrquery: Update to 1.1.0. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.1.0.
[propagated-inputs]: Add r-bit64.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 8a05d17037
gnu: r-gmp: Update to 0.5-13.4. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 7706a98cda
gnu: r-huge: Update to 1.3.0. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.0.
[propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus f59cdeaf25
gnu: r-igraph: Update to 1.2.4. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus ed494a0acd
gnu: r-dplyr: Update to 0.8.0.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1.
[native-inputs]: Move r-rcpp and r-bh from here...
[propagated-inputs]: ...to here; remove r-bindrcpp.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6caf80fbaf
gnu: r-lme4: Update to 1.1-21. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-21.
[native-inputs]: Move r-rcpp and r-rcppeigen from here...
[propagated-inputs]: ...to here; add r-boot.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 34a98f79d7
gnu: r-forcats: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.4.0.
[propagated-inputs]: Add r-ellipsis.
 2019-03-07 23:52:39 +01:00
Ricardo Wurmus 6a0a2342dd
gnu: r-r6: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.4.0.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 4b16c00e9a
gnu: r-formatr: Update to 1.6. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.6.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 1f7a76a0c1
gnu: r-evaluate: Update to 0.13. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.13.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 48a4b775b9
gnu: r-mgcv: Update to 1.8-27. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-27.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 71fe7f9d21
gnu: r-stringi: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.3.1.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 605fcf8a23
gnu: r-stringr: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.0.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 17abcd521a
gnu: r-ranger: Update to 0.11.2. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus 9066534d4c
gnu: r-openssl: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
 2019-03-07 23:52:38 +01:00
Ricardo Wurmus a1d9387d82
gnu: r-catools: Update to 1.17.1.2. 
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 4fadef3ba0
gnu: r-xml: Update to 3.98-1.19. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus bc7895e1cf
gnu: r-flexmix: Update to 2.3-15. 
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 6be62a5a72
gnu: r-irlba: Update to 2.3.3. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus b22a20405a
gnu: r-registry: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 3db71d065c
gnu: r-r-utils: Update to 2.8.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 21886e730b
gnu: r-r-rsp: Update to 0.43.1. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus ed4100dc96
gnu: r-mvtnorm: Update to 1.0-10. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus ebd37b49f9
gnu: r-tidyr: Update to 0.8.3. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3.
 2019-03-07 23:52:37 +01:00
Ricardo Wurmus 84840deb95
gnu: r-purrr: Update to 0.3.1. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus b58220f599
gnu: r-pbapply: Update to 1.4-0. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus e51096b2ea
gnu: r-vgam: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-1.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus aeb11b7549
gnu: r-ggthemes: Update to 4.1.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus d235cf7268
gnu: r-shiny: Update to 1.2.0. 
* gnu/packages/cran.scm (r-shiny): Update to 1.2.0.
[arguments]: Adjust processing of minified JavaScript.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 83ef38b038
gnu: r-epi: Update to 2.35. 
* gnu/packages/cran.scm (r-epi): Update to 2.35.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 75cbc80037
gnu: r-network: Update to 1.14-377. 
* gnu/packages/cran.scm (r-network): Update to 1.14-377.
[propagated-inputs]: Add r-magrittr and r-tibble.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus fadc49c6e5
gnu: r-vegan: Update to 2.5-4. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-4.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus d1c2fd8eeb
gnu: r-future-apply: Update to 1.2.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.2.0.
 2019-03-07 23:52:36 +01:00
Ricardo Wurmus 6e8b38d3e8
gnu: Add r-furrr. 
* gnu/packages/cran.scm (r-furrr): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus f0bff69873
gnu: Add r-survey. 
* gnu/packages/cran.scm (r-survey): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus dab3e92c94
gnu: Add r-magick. 
* gnu/packages/cran.scm (r-magick): New variable.
 2019-03-07 23:52:35 +01:00
Ricardo Wurmus 3f22a115bd
gnu: Add r-ellipsis. 
* gnu/packages/cran.scm (r-ellipsis): New variable.
 2019-03-07 23:52:35 +01:00
Pierre Neidhardt d748cb5f47
gnu: Add autorandr. 
* gnu/packages/xdisorg.scm (autorandr): New variable.
 2019-03-07 22:23:38 +01:00
Julien Lepiller 945723be97
gnu: php: Update to 7.3.3. 
* gnu/packages/php.scm (php): Update to 7.3.3.
 2019-03-07 21:18:30 +01:00
Efraim Flashner dcf4d01f30
gnu: libmicrohttpd: Enable parallel tests. 
* gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable
parallel tests.
 2019-03-07 22:00:53 +02:00
Efraim Flashner c4bfce994e
gnu: libmicrohttpd: Update to 0.9.63. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63.
[arguments]: Remove custom phase to add missing LDFLAGS.
 2019-03-07 22:00:53 +02:00
Efraim Flashner 0ef54303f3
gnu: c-graph: Update to 2.0.1. 
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
 2019-03-07 22:00:52 +02:00
Ludovic Courtès 0ae735bcc8
activation: Build account databases with (gnu build accounts). 
* gnu/build/activation.scm (enumerate, current-users, current-groups)
(add-group, add-user, modify-user, ensure-user): Remove.
(activate-users+groups)[touch, activate-user]: Remove.
[make-home-directory]: New procedure.
Rewrite in terms of 'user+group-databases', 'write-group', etc.
* gnu/build/install.scm (directives): Remove "/root".
* gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...)
expression, which is now unneeded.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès ec600e4544
Add (gnu build accounts). 
* gnu/build/accounts.scm, tests/accounts.scm: New files.
* Makefile.am (SCM_TESTS): Add tests/accounts.scm.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès 6061d01512
activation: Operate on <user-account> and <user-group> records. 
* gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New
procedures.
* gnu/system/shadow.scm (account-activation): Call them in the arguments
to 'activate-users+groups'.
(account-shepherd-service): Likewise.
* gnu/build/activation.scm (activate-users+groups): Expect a list of
<user-account> and a list of <user-group>.  Replace uses of 'match' on
tuples with calls to record accessors.
(activate-user-home): Likewise.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès f6f67b87c0
system: Add (gnu system accounts). 
The (gnu system accounts) module is meant to be used both on the build-
and on the host-side.

* gnu/system/shadow.scm <top level>: Call 'default-shell'.
(<user-account>, <user-group>): Move to...
* gnu/system/accounts.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
 2019-03-07 20:04:02 +01:00
Pierre Neidhardt b60e9fb82f
gnu: fuseiso: Fix typo in description. 
* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
 2019-03-07 17:12:46 +01:00
Tobias Geerinckx-Rice 1e1142d8cb
gnu: Add nullmailer. 
* gnu/packages/mail.scm (nullmailer): New public variable.
 2019-03-07 15:39:46 +01:00
Ricardo Wurmus 4d0e085bea
gnu: gnome-settings-daemon: Ensure RUNPATH contains library subdir. 
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Pass configure
flag to add $out/lib/gnome-settings-daemon-3.0 to RUNPATH.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 34c44a34ab
gnu: eog: Ensure RUNPATH contains output library directory. 
* gnu/packages/gnome.scm (eog)[arguments]: Pass configure flag to add
$out/lib/eog to RUNPATH.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus a6d378e2e7
gnu: cups-filters: Fix build with newer version of poppler. 
* gnu/packages/cups.scm (cups-filters)[arguments]: Add build phase
"patch-for-poppler".
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 294ff39d27
gnu: dconf-editor: Update to 3.28.0. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.28.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin and vala.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 9f475e3c3f
gnu: network-manager-applet: Update to 1.8.14. 
* gnu/packages/gnome.scm (network-manager-applet): Update to 1.8.14.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 0310eb966b
gnu: network-manager-openvpn: Update to 1.8.4. 
* gnu/packages/gnome.scm (network-manager-openvpn): Update to 1.8.4.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus fc984c8596
gnu: gnome-online-accounts: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.28.0.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus bb10e7c817
gnu: evolution-data-server: Update to 3.28.3. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.28.3.
 2019-03-07 13:44:25 +01:00
Ricardo Wurmus 0a76f2bd3b
gnu: gdm: Update to 3.28.2. 
* gnu/packages/gnome.scm (gdm): Update to 3.28.2.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus 59dac02602
gnu: gnome-control-center: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.28.2.
[build-system]: Use meson-build-system.
[arguments]: Add configure flags.
[native-inputs]: Add gkt+:bin.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus caf6c3637b
gnu: nautilus: Update to 3.28.1. 
* gnu/packages/gnome.scm (nautilus): Update to 3.28.1.
[inputs]: Add gexiv2.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus fd3b117173
gnu: gnome-bluetooth: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-bluetooth): Update to 3.28.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus c8bdf589c9
gnu: tracker: Update to 2.0.4. 
* gnu/packages/gnome.scm (tracker): Update to 2.0.4.
[arguments]: Add phases "disable-broken-tests" and "pre-check"; enable tests.
[inputs]: Remove nettle, add python.
 2019-03-07 13:44:24 +01:00
Ricardo Wurmus 8356aefafc
gnu: gnome-screenshot: Update to 3.26.0. 
* gnu/packages/gnome.scm (gnome-screenshot): Update to 3.26.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin, desktop-file-utils, and appstream-glib.
 2019-03-07 13:43:17 +01:00
Ricardo Wurmus 80d1e4c0f7
gnu: gnome-clocks: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-clocks): Update to 3.28.0.
 2019-03-07 13:43:17 +01:00
Ricardo Wurmus 9f3c6c8825
gnu: gnome-todo: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-todo): Update to 3.28.1.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gnome-todo-libical-compat.patch: Remove file.
 2019-03-07 13:43:17 +01:00
Ricardo Wurmus a286b5ebda
gnu: gnome-calendar: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-calendar): Update to 3.28.2.
[inputs]: Add libdazzle, libgweather, and geoclue.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 100f625b83
gnu: gnome-shell-extensions: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-shell-extensions): Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Adjust.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 4a3f6e02a1
gnu: libgnomekbd: Update to 3.26.0. 
* gnu/packages/gnome.scm (libgnomekbd): Update to 3.26.0.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 112e908323
gnu: gnome-calculator: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.28.2.
[inputs]: Add glib and libxml2; replace gtksourceview with gtksourceview-3.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus c60063ea56
gnu: gucharmap: Update to 10.0.4. 
* gnu/packages/gnome.scm (gucharmap): Update to 10.0.4.
[arguments]: Add phase "prepare-unicode-data".
[native-inputs]: Add unicode files.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 4985d9aa93
gnu: gnome-system-monitor: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-system-monitor): Update to 3.28.2.
[native-inputs]: Add polkit.
[inputs]: Add libwnck.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 84548bd7fa
gnu: python-pyatspi: Update to 2.26.0. 
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.26.0.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 5055d385ff
gnu: mutter: Update to 3.28.2. 
* gnu/packages/gnome.scm (mutter): Update to 3.28.2.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus f8e2b57781
gnu: zenity: Update to 3.28.1. 
* gnu/packages/gnome.scm (zenity): Update to 3.28.1.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus df27807185
gnu: gnome-session: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-session): Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Adjust "pre-configure" phase; update configure flags.
[native-inputs]: Add libxml2, docbook-xsl, docbook-xml, and xmlto.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 45f80fce92
gnu: network-manager: Update to 1.10.10. 
* gnu/packages/gnome.scm (network-manager): Update to 1.10.10.
[arguments]: Add phase "delete-failing-tests"; use INVOKE in the install
phase.
 2019-03-07 13:42:30 +01:00
Ricardo Wurmus 6a19f03e8b
gnu: cheese: Propagate more inputs. 
* gnu/packages/gnome.scm (cheese)[inputs]: Move clutter, libcanberra, and
gstreamer from here...
[propagated-inputs]: ...to here.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 870a4e70ec
gnu: orca: Update to 3.28.1. 
* gnu/packages/gnome.scm (orca): Update to 3.28.1.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 7271781738
gnu: gjs: Update to 1.52.3. 
* gnu/packages/gnome.scm (gjs): Update to 1.52.3.
[propagated-inputs]: Replace mozjs-38 with mozjs-52.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 5dd12afcfb
gnu: devhelp: Update to 3.28.1. 
* gnu/packages/gnome.scm (devhelp): Update to 3.28.1.
[native-inputs]: Add itstool.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 8c0fab36d8
gnu: gnome-mines: Update to 3.28.0. 
* gnu/packages/gnome.scm (gnome-mines): Update to 3.28.0.
[build-system]: Use meson-build-system.
[arguments]: Delete "bootstrap" phase; remove "patch-/bin/true" phase.
[native-inputs]: Add glib:bin, vala, yeld, and appstream-glib; remove libxml2.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus d953418aee
gnu: librsvg: Build Vala bindings. 
* gnu/packages/gnome.scm (librsvg)[arguments]: Enable building of Vala
bindings.
[native-inputs]: Add vala.
 2019-03-07 13:42:29 +01:00
Ricardo Wurmus 0ab9f949da
gnu: gvfs: Update to 1.36.2. 
* gnu/packages/gnome.scm (gvfs): Update to 1.36.2.
[arguments]: Add phase "remove-broken-autogen-script".
[native-inputs]: Add autoconf, automake, gettext-minimal, gtk-doc, and
libtool.
[inputs]: Add libimobiledevice.
 2019-03-07 13:41:29 +01:00
Ricardo Wurmus ab35cc6e5b
gnu: gnome-keyring: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.28.2.
[arguments]: Replace "pre-check" phase with "fix-/bin/sh-reference".
[inputs]: Add openssh.
 2019-03-07 13:41:29 +01:00
Ricardo Wurmus dd7a244614
gnu: libgnome-games-support: Update to 1.4.1. 
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.4.1.
 2019-03-07 13:41:29 +01:00
Ricardo Wurmus b78f511817
gnu: libgudev: Update to 232. 
* gnu/packages/gnome.scm (libgudev): Update to 232.
[arguments]: Add configure flags to cut recursive dependency.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus 61fb581fbb
gnu: eog: Update to 3.28.2. 
* gnu/packages/gnome.scm (eog): Update to 3.28.2.
[build-system]: Use meson-build-system.
[native-inptus]: Add gtk+:bin.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus 1e9b19dd1f
gnu: totem-pl-parser: Update to 3.26.1. 
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.26.1.
[build-system]: Use meson-build-system.
[inputs]: Move libarchive and libgcrypt from here...
[propagated-inputs]: ...to here.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus e644f9fa49
gnu: gnome-settings-daemon: Update to 3.28.1. 
* gnu/packages/gnome.scm (gnome-settings-daemon): Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Override udev rules directory with configure flags.
[native-inputs]: Add glib:bin.
[inputs]: Add alsa-lib, colord, and wayland.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus cf6cbc34f5
gnu: libgweather: Update to 3.28.2. 
* gnu/packages/gnome.scm (libgweather): Update to 3.28.2.
[build-system]: Use meson-build-system.
[arguments]: Disable tests; adjust configure flags; remove custom build
phases.
[inputs]: Move libsoup and geocode-glib from here...
[propagated-inputs]: ...to here.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus a7dd0c02cc
gnu: geocode-glib: Update to 3.26.0. 
* gnu/packages/gnome.scm (geocode-glib): Update to 3.26.0.
[build-system]: Use meson-build-system.
[arguments]: Enable tests; add phase "set-locales".
[native-inputs]: Add glibc-locales, gettext-minimal, and gtk-doc.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus 83232ba2c8
gnu: five-or-more: Update to 3.28.0. 
* gnu/packages/gnome.scm (five-or-more): Update to 3.28.0.
 2019-03-07 13:41:28 +01:00
Ricardo Wurmus c6571adb09
gnu: glade3: Update to 3.22.1. 
* gnu/packages/gnome.scm (glade3): Update to 3.22.1.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 3b5d5b4a9f
gnu: adwaita-icon-theme: Update to 3.28.0. 
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 934cc5691a
gnu: gsettings-desktop-schemas: Update to 3.28.0. 
* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 0daf0efbe6
gnu: gcr: Update to 3.28.0. 
* gnu/packages/patches/gcr-disable-failing-tests.patch,
gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch:
Remove files.
* gnu/local.mk (dist_patch_DATA): Remove patches.
* gnu/packages/gnome.scm (gcr): Update to 3.28.0.
[arguments]: Add phase "disable-failing-tests"; rewrite "pre-check" phase.
[native-inputs]: Add libxml2.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 9863ce205d
gnu: gnome-desktop: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-desktop): Update to 3.28.2.
[inputs]: Add libseccomp.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 5ba1781915
gnu: libproxy: Remove network-manager. 
This is necessary to break a dependency cycle.

* gnu/packages/networking.scm (libproxy)[inputs]: Remove network-manager.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 78ac232e79
gnu: gnome-maps: Update to 3.28.2. 
* gnu/packages/geo.scm (gnome-maps): Update to 3.28.2.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 1258112a27
gnu: glibmm: Update to 2.56.0. 
* gnu/packages/glib.scm (glibmm): Update to 2.56.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus b54c22898d
gnu: gedit: Use gtksourceview-3. 
* gnu/packages/gnome.scm (gedit)[inputs]: Replace "gtksourceview" with
"gtksourceview-3".
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 0a500745c7
gnu: file-roller: Update to 3.28.0. 
* gnu/packages/gnome.scm (file-roller): Update to 3.28.0.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils, gtk+:bin, and glib:bin.
[arguments]: Remove.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 2089bca52a
gnu: yelp-tools: Update to 3.28.0. 
* gnu/packages/gnome.scm (yelp-tools): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus 7c2139005b
gnu: yelp-xsl: Update to 3.28.0. 
* gnu/packages/gnome.scm (yelp-xsl): Update to 3.28.0.
 2019-03-07 13:41:04 +01:00
Ricardo Wurmus ef7f084fe5
gnu: yelp: Update to 3.28.1. 
* gnu/packages/gnome.scm (yelp): Update to 3.28.1.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 8c5b884c34
gnu: at-spi2-core: Update to 2.28.0. 
* gnu/packages/gtk.scm (at-spi2-core): Update to 2.28.0.
[build-system]: Use meson-build-system.
[arguments]: Adjust configure-flags; add build phases: set-documentation-path,
prepare-doc-directory, move-documentation; move check phase after install.
[native-inputs]: Add gtk-doc and glib:bin.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 7a1bb44a5d
gnu: gtk-doc: Update to 1.28. 
* gnu/packages/gtk.scm (gtk-doc): Update to 1.28.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus c5989b03ea
gnu: Add gtksourceview-3. 
* gnu/packages/gtk.scm (gtksourceview-3): New variable.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 9dcb6fca41
gnu: gtksourceview: Update to 4.0.2. 
* gnu/packages/gtk.scm (gtksourceview): Update to 4.0.2.
 2019-03-07 13:41:03 +01:00
Ricardo Wurmus 3189fad217
gnu: neovim: Let build phase return #T. 
* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
 2019-03-07 13:39:45 +01:00
Ricardo Wurmus 3b296475bf
gnu: cd-hit: Support longer sequences. 
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
 2019-03-07 13:38:01 +01:00
Ricardo Wurmus 237ee6f2b2
gnu: python2-fastlmm: Disable tests. 
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable
tests.
 2019-03-07 13:37:58 +01:00
Rutger Helling 9fd6ad3e35
gnu: wireguard: Update to 0.0.20190227. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227.
[arguments]: Disable tests.
 2019-03-07 12:23:43 +01:00
Rutger Helling 9cb4bda222
gnu: nftables: Update to 0.9.0. 
* gnu/packages/linux.scm (nftables): Update to 0.9.0.
[arguments]: Add "--disable-man-doc" configure flag.
 2019-03-07 12:08:21 +01:00
Kei Kebreau ccf2446730
gnu: minetest: Update to 5.0.0. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
 2019-03-07 05:31:19 -05:00
Gábor Boskovits 0a10abf73e
gnu: neovim: Fix #34616. 
This fixes a segmentation fault in neovim, where an error return value
is passed in as a pointer.

* gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
 2019-03-07 11:08:31 +01:00
Rutger Helling 9776417246
gnu: vulkan-tools: Update to 1.1.102. 
* gnu/packages/vulkan.scm (vulkan-tools): Update to 1.1.102.
[arguments]: Remove "-DBUILD_ICD=OFF" configure flag.
 2019-03-07 10:42:27 +01:00
Gábor Boskovits 2702aa9136
gnu: unibilium: Update to 2.0.0. 
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0.
[native-inputs]: Add perl.
 2019-03-07 09:48:03 +01:00
Tobias Geerinckx-Rice abe6e670d3
gnu: sane-backends-minimal: Fix USB support. 
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace
libusb-compat with libusb.
[arguments]: Disable tests that require USB access.
 2019-03-07 02:13:26 +01:00
Mark H Weaver 274fa49100
gnu: linux-libre: Update to 5.0. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): Rename to ...
(%linux-libre-5.0-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2019-03-06 17:51:55 -05:00
Mark H Weaver 9870f3ec61
gnu: linux-libre@4.19: Update to 4.19.27. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27.
(%linux-libre-4.19-hash): Update hash.
 2019-03-06 17:51:12 -05:00
Mark H Weaver 1b1a6c028b
gnu: linux-libre@4.14: Update to 4.14.105. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105.
(%linux-libre-4.14-hash): Update hash.
 2019-03-06 17:50:21 -05:00
Mark H Weaver 7850fa891d
gnu: linux-libre@4.9: Update to 4.9.162. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162.
 2019-03-06 17:49:26 -05:00
Ricardo Wurmus fc240e7e05
gnu: synthv1: Update to 0.9.5. 
* gnu/packages/music.scm (synthv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus 6ef147bd1d
gnu: drumkv1: Update to 0.9.5. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus cf6195906c
gnu: samplv1: Update to 0.9.5. 
* gnu/packages/music.scm (samplv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus 4b159add6f
gnu: padthv1: Update to 0.9.5. 
* gnu/packages/music.scm (padthv1): Update to 0.9.5.
 2019-03-06 22:26:07 +01:00
Ricardo Wurmus d935f69b11
gnu: yoshimi: Update to 1.5.10.2. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.10.2.
 2019-03-06 22:26:06 +01:00
Vagrant Cascadian 01d8a2a3d9
gnu: electron-cash: Update to 3.3.6. 
* gnu/packages/finance (electron-cash): Update to 3.3.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-06 16:06:26 -05:00
Vagrant Cascadian 307603dd88
gnu: electrum: Update to 3.3.4. 
* gnu/packages/finance (electrum): Update to 3.3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-06 16:06:26 -05:00
Vagrant Cascadian 11599cff1e
gnu: diffoscope: Update to 113. 
* gnu/packages/package-management (diffoscope): Update to 113.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-06 22:05:07 +01:00
Ricardo Wurmus 61e265d294
gnu: Add multitime. 
* gnu/packages/benchmark.scm (multitime): New variable.
 2019-03-06 21:55:14 +01:00
Ricardo Wurmus 8035819f4c
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
 2019-03-06 21:43:33 +01:00
Ricardo Wurmus d56df35a25
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
 2019-03-06 21:42:39 +01:00
Ricardo Wurmus f8780e96ff
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
 2019-03-06 21:41:48 +01:00
Ricardo Wurmus 3a08940e1a
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
 2019-03-06 21:35:20 +01:00
Ricardo Wurmus 7bc5d1b0e1
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
 2019-03-06 21:33:17 +01:00
Ricardo Wurmus 13dabd6947
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
 2019-03-06 21:31:41 +01:00
Ricardo Wurmus 0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
 2019-03-06 21:30:30 +01:00
Ricardo Wurmus b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
 2019-03-06 21:29:20 +01:00
Ricardo Wurmus c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
 2019-03-06 21:26:54 +01:00
Ricardo Wurmus 5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
 2019-03-06 21:25:18 +01:00
Ricardo Wurmus fe0b76e215
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
 2019-03-06 21:23:42 +01:00
Ricardo Wurmus 40a6505711
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
 2019-03-06 21:23:20 +01:00
Ricardo Wurmus 66e35ce63b
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
 2019-03-06 21:16:33 +01:00
Ricardo Wurmus bfb93b4889
gnu: r-geneplotter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
 2019-03-06 21:13:38 +01:00
Ricardo Wurmus 9f8698ad1c
gnu: Add guile-stis-parser. 
* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable.
 2019-03-06 21:07:49 +01:00
Ricardo Wurmus 3d13b448e5
gnu: r-copynumber: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
* gnu/packages/bioconductor.scm (r-copynumber): ...to here.
 2019-03-06 21:07:49 +01:00
Ricardo Wurmus 6aa896d82e
gnu: Update copyright headers. 
This is a follow-up to commit 1fe9a36173.

* gnu/packages/bioconductor.scm: Update copyright header to account for moved
package.
 2019-03-06 21:07:49 +01:00
Efraim Flashner d2b38df62e
gnu: font-gnu-unifont: Update to 12.0.01. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01.
 2019-03-06 20:51:47 +02:00