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9918 Commits

Author SHA1 Message Date
Ricardo Wurmus f7c4dc2f55 gnu: Add XML::LibXML::Simple. 
* gnu/packages/xml.scm (perl-xml-libxml-simple): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus 8aad646637 gnu: Add File::Slurp::Tiny. 
* gnu/packages/perl.scm (perl-file-slurp-tiny): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus a05996e000 gnu: Add HTML::Template. 
* gnu/packages/web.scm (perl-html-template): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus b494a5f1bd gnu: Add XML::Compile. 
* gnu/packages/xml.scm (perl-xml-compile): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus 649e1676bc gnu: Add XML::Compile::Tester. 
* gnu/packages/xml.scm (perl-xml-compile-tester): New variable.
 2015-12-24 10:10:40 +01:00
Ricardo Wurmus dd686c0838 gnu: Add Log::Report. 
* gnu/packages/perl.scm (perl-log-report): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus fc2448bf89 gnu: Add Log::Report::Optional. 
* gnu/packages/perl.scm (perl-log-report-optional): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus c47b85de0c gnu: Add String::Print. 
* gnu/packages/perl.scm (perl-string-print): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus e92468d803 gnu: Add Unicode::LineBreak. 
* gnu/packages/perl.scm (perl-unicode-linebreak): New variable.
 2015-12-24 10:10:39 +01:00
Ricardo Wurmus 55932aeee1 gnu: Add MIME::Charset. 
* gnu/packages/perl.scm (perl-mime-charset): New variable.
 2015-12-24 10:10:39 +01:00
Leo Famulari 8f1640ed8f gnu: gusb: Update home-page. 
* gnu/packages/gnome.scm (gusb)[home-page]: Update home-page.
 2015-12-24 02:16:57 -05:00
Mark H Weaver 097190417f gnu: icecat: Update to 38.5.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch,
  gnu/packages/patches/icecat-CVE-2015-7205.patch,
  gnu/packages/patches/icecat-CVE-2015-7210.patch,
  gnu/packages/patches/icecat-CVE-2015-7212.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7214.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch,
  gnu/packages/patches/icecat-freetype-2.6.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1.
  [source]: Remove patches.
 2015-12-23 18:19:59 -05:00
Mark H Weaver bba5de0e43 gnu: nss: Update to 3.20.2. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.20.2.
 2015-12-23 18:19:59 -05:00
Ben Woodcroft 1b9d4e2e20 gnu: ruby-nokogiri: Upgrade to 1.6.7.1. 
* gnu/packages/ruby.scm (ruby-nokogiri): Upgrade to 1.6.7.1.
 2015-12-23 14:02:10 -05:00
Ben Woodcroft d000fc92b1 gnu: Add ruby-mini-portile-2. 
* gnu/packages/ruby.scm (ruby-mini-portile-2): New variable.
 2015-12-23 14:02:06 -05:00
Ricardo Wurmus 4de7aede50 gnu: icedtea7: Update to 2.6.3. 
* gnu/packages/java.scm (icedtea7): Update to 2.6.3.
 2015-12-23 14:57:58 +01:00
Ricardo Wurmus e7173df87a gnu: icedtea6: Update to 1.13.9. 
* gnu/packages/java.scm (icedtea6): Update to 1.13.9.
 2015-12-23 14:57:58 +01:00
Efraim Flashner a9257a873f gnu: libmicrohttpd: Update to 0.9.48. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.48.
 2015-12-22 22:50:58 +02:00
Efraim Flashner 0877ef4342 gnu: parallel: Update to 20151222. 
* gnu/packages/parallel.scm (parallel): Update to 20151222.
 2015-12-22 22:47:44 +02:00
Efraim Flashner 419fa59b17 gnu: sipwitch: Update to 1.9.15. 
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.15.
 2015-12-22 22:45:41 +02:00
Efraim Flashner 99e6f9c828 gnu: ucommon: Update to 7.0.0. 
* gnu/packages/telephony.scm (ucommon): Update to 7.0.0.
[inputs]: Add gnutls.
 2015-12-22 22:39:48 +02:00
Mark H Weaver e54465ff85 gnu: isc-dhcp: Disable parallel build. 
* gnu/packages/admin.scm (isc-dhcp)[arguments]: Disable parallel build.
 2015-12-22 10:45:13 -05:00
Mark H Weaver 6548b1e122 gnu: isc-dhcp: Update to 4.3.3; update bundled bind to 9.9.8-P2. 
Fixes CVE-2015-8000 and CVE-2015-8461.

* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3.
  [inputs]: Add 'bind-source-tarball'.
  [arguments]: Use modify-phases.  Add 'replace-bundled-bind' phase.
  In 'post-configure' phase, avoid hard-coding version numbers of
  bundled bind.
 2015-12-21 19:47:27 -05:00
Mark H Weaver f9a5b18897 gnu: bind-utils: Update to 9.10.3-P2. 
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P2.
  [source]: Use HTTP URI instead of FTP.
 2015-12-21 19:47:26 -05:00
Ludovic Courtès ab64483f64 file-systems: The 'device' field can be a UUID (bytevector). 
Previously a wrong-type-arg error would be raised when a file system
with a UUID (bytevector) field was encountered.

* gnu/system.scm (other-file-system-services)[device-mappings]: Check
whether FS's device is a string.
 2015-12-22 00:29:43 +01:00
Ludovic Courtès be21979d85 file-systems: Add a 'mount?' field. 
Fixes <http://bugs.gnu.org/22176>.
Reported by Florian Paul Schmidt <mista.tapas@gmx.net>.

* gnu/system/file-systems.scm (<file-system>)[mount?]: New field.
(file-system->spec): Adjust accordingly.
* gnu/services/base.scm (file-system-dmd-service): Return the empty list
when FILE-SYSTEM has 'mount?' set to false.
(user-processes-service): Select the subset of FILE-SYSTEMS that matches
'file-system-mount?'.
* doc/guix.texi (File Systems): Document it.
 2015-12-22 00:29:21 +01:00
Ludovic Courtès e43e84ba7a services: Add 'fstab-service-type'. 
* gnu/services/base.scm (file-system->fstab-entry)
(file-systems->fstab): New procedures.
(fstab-service-type): New variable.
* gnu/services/base.scm (file-system-dmd-service): New procedure, taken
from...
(file-system-service-type): ... here.
* gnu/system.scm (essential-services): Add FSTAB-SERVICE-TYPE instance.
 2015-12-22 00:04:36 +01:00
Ricardo Wurmus 12d38e8d43 build: Add bioconductor-uri procedure. 
* guix/build-system/r.scm (bioconductor-uri): New procedure.
 2015-12-21 22:32:01 +01:00
Ricardo Wurmus 8e92cfb101 gnu: Add vmpk. 
* gnu/packages/music.scm (vmpk): New variable.
 2015-12-21 22:09:47 +01:00
Ricardo Wurmus bf76d7802c gnu: Add drumstick. 
* gnu/packages/music.scm (drumstick): New variable.
 2015-12-21 22:09:47 +01:00
Leo Famulari ef9006451f gnu: letsencrypt and acme: Update to 0.1.1. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.1.1.
[source]: Use pypi-uri.
* gnu/packages/tls.scm (acme): Update to 0.1.1.
[source]: Use pypi-uri.
 2015-12-21 14:35:58 -05:00
Efraim Flashner 704989660f gnu: ffmpeg: Update to 2.8.4. 
* gnu/packages/video.scm (ffmpeg): Update to 2.8.4.
 2015-12-21 21:30:46 +02:00
Leo Famulari d12717cba0 doc: Be more explicit in example of file-systems configuration. 
* gnu/system/examples/bare-bones.tmpl (file-systems): Change device
label.
* gnu/system/examples/desktop.tmpl (file-systems): Likewise.
 2015-12-21 13:12:07 -05:00
Leo Famulari dd81635571 doc: Explain significance of partition labels. 
* doc/guix.texi (Preparing for Installation): Point out relationship
between partition labels and the file-system configuration.
 2015-12-21 12:53:12 -05:00
Leo Famulari f0150f8724 gnu: grub: Add fix for CVE-2015-8730. 
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
 2015-12-21 12:33:55 -05:00
Ricardo Wurmus e2cd1d0fb9 gnu: Add GenomicRanges. 
* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 0e7d5560de gnu: Add XVector. 
* gnu/packages/bioinformatics.scm (r-xvector): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus bf7764b74f gnu: Add GenomeInfoDb. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 78addcb0eb gnu: Add IRanges. 
* gnu/packages/bioinformatics.scm (r-iranges): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 7485129e4f gnu: Add S4Vectors. 
* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus d29b25c490 gnu: Add BiocGenerics. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
 2015-12-21 17:22:16 +01:00
Ricardo Wurmus 9fba89e829 gnu: Add r-acsnminer. 
* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus 9e47f30b08 gnu: Add r-gridextra. 
* gnu/packages/statistics.scm (r-gridextra): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus b73751c8ff gnu: Add r-gtable. 
* gnu/packages/statistics.scm (r-gtable): New variable.
 2015-12-21 17:21:26 +01:00
Ricardo Wurmus 77bdb276e9 gnu: Add r-rmarkdown. 
* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
  prevent circular package module imports.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus 4c1f2705b5 gnu: Add r-catools. 
* gnu/packages/statistics.scm (r-catools): New variable.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus bb6d2dadf7 gnu: Add r-bitops. 
* gnu/packages/statistics.scm (r-bitops): New variable.
 2015-12-21 17:13:44 +01:00
Ricardo Wurmus 8406138b72 gnu: Add AdaptiveSparsity. 
* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
 2015-12-21 16:05:38 +01:00
Ricardo Wurmus e22d4ca4c4 gnu: Add r-rcpparmadillo. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
 2015-12-21 16:05:37 +01:00
Ricardo Wurmus b15e47f9e6 gnu: Add armadillo. 
* gnu/packages/maths.scm (armadillo): New variable.
 2015-12-21 15:47:40 +01:00