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338 Commits (032a2760eef6dc64fa36f2fb3a211b755d5124bb)

Author SHA1 Message Date
Kei Kebreau 4a652c78d4
gnu: maxima: Update to 5.39.0. 
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
 2016-12-18 12:57:09 -05:00
Tobias Geerinckx-Rice bea3cf4b90
gnu: gsl: Update to 2.3. 
* gnu/packages/maths.scm (gsl): Update to 2.3.
 2016-12-12 22:08:45 +01:00
Paul Garlick f81c6a4932
gnu: gmsh: Update to 2.15.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-09 19:14:21 +01:00
Eric Bavier a4b0bfb195
gnu: netcdf: Upgrade to 4.4.1.1. 
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this.  Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
 2016-12-01 23:50:09 -06:00
Leo Famulari dcd9d1637a
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}]. 
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
 2016-11-30 11:16:18 -05:00
Ludovic Courtès 62126576fc
gnu: hdf5: Build the C++ interface. 
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
 2016-11-24 21:43:47 +01:00
Petter daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-21 14:39:54 -05:00
Efraim Flashner f5a077b10f
gnu: octave: Update to 4.2.0. 
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
 2016-11-15 15:21:15 +02:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Paul Garlick 1c79e0861a
gnu: gmsh: Update to 2.14.1 
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-11-10 18:57:57 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Kei Kebreau ccbc575824
gnu: maxima: Update to 5.38.1. 
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
 2016-11-03 16:14:05 -04:00
Leo Famulari 062c7e43ed
Merge branch 'master' into core-updates 2016-10-29 21:44:44 -04:00
Eric Bavier fba78d18c2
gnu: mumps: Upgrade to 5.0.2. 
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
 2016-10-28 15:53:32 -05:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0. 
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
 2016-10-26 16:23:25 +02:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries. 
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-25 14:56:37 +02:00
Thomas Danckaert d91025e3d0
gnu: Add coda. 
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2. 
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:05:20 +02:00
Mark H Weaver d2478b4cdd
Merge branch 'master' into core-updates 2016-10-19 10:54:36 -04:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures. 
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
 2016-10-18 21:15:43 +02:00
Mark H Weaver 061d7f3bd2
Merge branch 'master' into core-updates 2016-10-13 05:53:07 -04:00
Thomas Danckaert becbbefc9b
gnu: Add hdf4 
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-12 23:35:43 +02:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5. 
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-06 18:14:45 +02:00
Leo Famulari b19c7989b7
Merge branch 'master' into core-updates 2016-10-05 19:15:25 -04:00
Leo Famulari 517318adf0
gnu: Add Vc. 
* gnu/packages/maths.scm (vc): New variable.
 2016-10-05 12:49:41 -04:00
Ludovic Courtès ab2cc5cde1
gnu: gsl: Disable failing tests on i686. 
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
 2016-10-05 15:11:08 +02:00
Ludovic Courtès 8c82e1c9d3
gnu: gsl: Update to 2.2.1. 
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
 2016-10-04 16:37:59 +02:00
Ludovic Courtès 0f7cd95b81
gnu: gctp: 'license' field now has a <license> value. 
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
 2016-10-03 23:20:23 +02:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Alex Kost b94a6ca074
gnu: Add and use gettext-minimal. 
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this.  Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
 2016-09-28 17:54:50 +03:00
Thomas Danckaert 32f70e1f86
gnu: Add gctp. 
* gnu/packages/maths.scm (gctp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:37:46 -04:00
Efraim Flashner 538c0e3b69
gnu: openlibm: Remove support for mips. 
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
 2016-09-21 22:36:52 +03:00
Leo Famulari 883d0a7d25
gnu: openblas: Update to 0.2.19. 
* gnu/packages/maths.scm (openblas): Update to 0.2.19.
 2016-09-13 00:50:13 -04:00
Ricardo Wurmus 5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus ccd9b1511e
gnu: r-pracma: Update to 1.9.5. 
* gnu/packages/maths.scm (r-pracma): Update to 1.9.5.
[propagated-inputs]: Add "r-quadprog".
 2016-09-12 17:44:40 +02:00
Ricardo Wurmus 2d047896f9
gnu: Add r-quadprog. 
* gnu/packages/maths.scm (r-quadprog): New variable.
 2016-09-12 17:44:40 +02:00
Mark H Weaver bb76ef9d8b
Revert "gnu: gsl: Update to 2.2." 
This reverts commit b16b16e6c2.

Rationale: gsl-2.2 consistently fails its test suite on i686.  Inkscape
depends on gsl, and the grub background image is converted using
inkscape, so i686 systems can no longer be built.
 2016-09-01 20:17:01 -04:00
Efraim Flashner b16b16e6c2
gnu: gsl: Update to 2.2. 
* gnu/packages/maths.scm (gsl): Update to 2.2.
 2016-08-30 08:39:09 +03:00
Efraim Flashner b3d2be945d
Merge remote-tracking branch 'origin/master' into core-updates 2016-08-29 23:46:33 +03:00
Kei Kebreau aa127019b5
gnu: octave: Update to 4.0.3. 
* gnu/packages/maths.scm (octave): Update to 4.0.3.
[inputs]: Remove unnecessary curl, cyrus-sasl and openssl dependencies.
 2016-08-27 08:04:21 +02:00
Efraim Flashner 3c98ac0240
gnu: atlas: Update to 3.10.3. 
* gnu/packages/maths.scm (atlas): Update to 3.10.3.
 2016-08-22 10:56:03 +03:00
Efraim Flashner e5b4b96b8c
gnu: atlas: Use 'modify-phases'. 
* gnu/packages/maths.scm (atlas)[arguments]: Use 'modify-phases'.
 2016-08-19 17:41:09 +03:00
Ricardo Wurmus e04ae27bcf
gnu: openblas: Update to 0.2.18. 
* gnu/packages/maths.scm (openblas): Update to 0.2.18.
 2016-08-14 17:35:32 +02:00
Mark H Weaver 536fc5f8cd
Merge branch 'core-updates' 2016-08-04 08:17:05 -04:00
Mark H Weaver 0832787e5c
Revert "Merge branch 'core-updates'" 
This reverts commit 455859a50f.
 2016-08-04 08:16:38 -04:00
ng0 b7194849ad
Rename references to (gnu packages tcsh). 
* gnu/packages/algebra.scm, gnu/packages/boost.scm,
gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm:
Change broken references to module (gnu packages tcsh) to (gnu packages
shells).
 2016-08-03 16:22:31 +02:00
Ludovic Courtès 455859a50f
Merge branch 'core-updates' 2016-08-01 23:30:52 +02:00
Mark H Weaver 3d337bbc39
Merge branch 'master' into core-updates 2016-07-31 23:27:03 -04:00
Ludovic Courtès 5e74529271
gnu: units: Update to 2.13. 
* gnu/packages/maths.scm (units): Update to 2.13.
 2016-08-01 01:11:57 +02:00
Andreas Enge 101e847294
gnu: dealii: Update to 8.4.1. 
* gnu/packages/maths.scm (dealii): Update to 8.4.1.
* gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
 2016-07-31 15:22:41 +02:00
Mark H Weaver 0bab3af078
Merge branch 'master' into core-updates 2016-07-29 14:18:07 -04:00
Ludovic Courtès a3947cb1b8
gnu: Sync GNU descriptions with upstream. 
From 'guix lint -c gnu-description'.

* gnu/packages/gnunet.scm (gnunet): Adjust description.
* gnu/packages/marst.scm (marst): Likewise.
* gnu/packages/maths.scm (c-graph): Likewise.
* gnu/packages/networking.scm (macchanger): Likewise.
 2016-07-29 10:13:12 +02:00
Ludovic Courtès 5dbfbef729
gnu: lpsolve: Fix compilation issue. 
Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html>.

* gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
 2016-07-26 00:43:52 +02:00
Ludovic Courtès 6689d09457
gnu: lpsolve: Fail as early as possible. 
* gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check
the return value of 'system*' and honor it.
 2016-07-26 00:43:52 +02:00
Efraim Flashner 430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
 2016-07-22 18:24:22 +03:00
Leo Famulari d7cff656df
gnu: muparser: Update source URL. 
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
 2016-07-21 18:25:20 -04:00
Leo Famulari de67e92288
gnu: Update URLs for sourceforge.net. 
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
 2016-07-21 18:09:40 -04:00
Efraim Flashner a9c64810cd
gnu: gnuplot: Update to 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
 2016-07-21 13:56:51 +03:00
Eric Bavier 2908087013
gnu: superlu-dist: Remove non-free source. 
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
 2016-07-20 21:16:25 -05:00
Eric Bavier 8787c555d9
gnu: slepc: Update to 3.7.1. 
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
 2016-07-20 21:16:25 -05:00
Eric Bavier fafd623e49
gnu: petsc: Update to 3.7.2. 
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
 2016-07-20 21:16:24 -05:00
Eric Bavier b730b43770
gnu: petsc: Make header generation reproducible. 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
  petscmachineinfo.h header.
 2016-07-20 21:16:24 -05:00
Eric Bavier 64dcc28963
gnu: petsc: Use modify-phases. 
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
 2016-07-20 21:16:24 -05:00
Eric Bavier 995a09e055
gnu: superlu: Update to 5.2.1. 
* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
 2016-07-20 18:31:16 -05:00
Eric Bavier d721c83a63
gnu: Add libhilbert. 
* gnu/packages/maths.scm (libhilbert): New variable.
 2016-07-20 18:31:16 -05:00
Ludovic Courtès 8e9ba611cb
gnu: atlas: Use @example in description. 
* gnu/packages/maths.scm (atlas)[description]: Use "@example".
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice d97c429a34
gnu: atlas: Use cpupower in description. 
* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector'
with its replacement 'cpupower --governor'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Ricardo Wurmus 7b569b01d3
gnu: lapack: Build the LAPACKE library. 
* gnu/packages/maths.scm (lapack)[arguments]: Add "-DLAPACKE=ON".
 2016-07-17 11:09:31 +02:00
Efraim Flashner 49f54a7454
gnu: openspecfun: Update to 0.5.2. 
* gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
 2016-07-03 10:14:16 +03:00
Efraim Flashner 26f6e565a9
gnu: openlibm: Update to 0.5.1. 
* gnu/packages/maths.scm (openlibm): Update to 0.5.1.
 2016-07-03 10:07:17 +03:00
Ludovic Courtès 468e0b18d1
gnu: ceres-solver: Propagate GLOG. 
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here.  New field.
 2016-06-29 16:08:46 +02:00
Ludovic Courtès bc3a2e3503
gnu: ceres-solver: Depend on glog. 
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
 2016-06-29 12:01:05 +02:00
Ludovic Courtès ad1c453731
gnu: ipopt: Use libblas from LAPACK, and fix 'Libs' in 'ipopt.pc'. 
* gnu/packages/maths.scm (ipopt)[inputs]: Remove OPENBLAS.
[arguments]: New field.
 2016-06-03 14:37:26 +02:00
Ludovic Courtès f9940ef1e8
gnu: Add ceres-solver. 
* gnu/packages/maths.scm (ceres): New variable.
 2016-06-03 13:54:39 +02:00
Ludovic Courtès 005c787d59
gnu: Add IpOpt. 
* gnu/packages/maths.scm (ipopt): New variable.
 2016-06-02 19:11:14 +02:00
宋文武 de477809d7
gnu: wxmaxima: Wrap with GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS. 
Fixes <http://bugs.gnu.org/22709> and <http://bugs.gnu.org/23260>.

* gnu/packages/math.scm (wxmaxima)[arguments]: Wrap with
GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS.
 2016-05-28 07:29:10 +08:00
Roel Janssen 8f9ac90182
gnu: Rename texlive module to tex. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm.
* gnu/packages/texlive.scm: Rename file to tex.scm.
* gnu/packages/tex.scm: Renamed from texlive.scm.
* gnu/packages/algebra.scm: Adjust accordingly.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/gettext.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/lisp.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
 2016-05-26 10:22:05 +02:00
Ricardo Wurmus 813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 945eef85c5
gnu: armadillo: Update to 6.700.7. 
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
 2016-05-20 15:18:23 +02:00
Ludovic Courtès 9684e30b9b
gnu: flann: Do not install .a files. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
 2016-05-19 14:51:21 +02:00
Ludovic Courtès 39b3033731
gnu: flann: Strip .mex file. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
 2016-05-19 14:51:21 +02:00
Kei Yamashita b7b27a8f28
gnu: octave: Update to 4.0.2. 
* gnu/packages/maths.scm (octave): Update to 4.0.2.
[inputs]: Added cyrus-sasl, openssl.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-19 04:32:23 +03:00
Efraim Flashner 66395a6157
gnu: gmsh: Add missing inputs. 
* gnu/packages/maths.scm (gmsh)[inputs]: Add fontconfig, libxft.
 2016-05-16 10:18:43 +03:00
宋文武 e6a905070a gnu: wxmaxima: Update to 16.04.2. 
* gnu/packages/maths.scm (wxmaxima): Update to 16.04.2.
 2016-05-15 15:49:35 +08:00
Eric Bavier 889187a464 gnu: Add NetCDF. 
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): New variables.
 2016-05-12 19:59:53 +00:00
Eric Bavier 6c90e183cf gnu: Add Matio. 
* gnu/packages/maths.scm (matio): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier 00775104ee gnu: Add h5check. 
* gnu/packages/maths.scm (h5check): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier c8378eea10 gnu: Add hdf5-openmpi. 
* gnu/packages/maths.scm (hdf5-openmpi): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier b8d9c93bde gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH. 
* gnu/packages/patches/hdf5-config-date.patch: New patch.
* gnu/packages/maths.scm (hdf5)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-05-12 19:59:52 +00:00
Eric Bavier f622e2123b gnu: hdf5: Patch output references to zlib. 
* gnu/packages/maths.scm (hdf5)[arguments]: Use modify-phases.  Add
'patch-references' phase.
 2016-05-12 19:59:52 +00:00
Eric Bavier 04b7a7cd10 gnu: hdf5: Update to 1.8.17. 
* gnu/packages/maths.scm (hdf5): Update to 1.8.17.
 2016-05-12 19:59:52 +00:00
Eric Bavier 528bb46436 gnu: Add HYPRE. 
* gnu/packages/maths.scm (hypre, hypre-openmpi): New variables.
* gnu/packages/patches/hypre-doc-tables.patch,
gnu/packages/patches/hypre-ldflags.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Roel Janssen 1b39a196f8
gnu: Add nlopt. 
* gnu/packages/maths.scm (nlopt): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 21:57:05 +02:00
Ricardo Wurmus c5ad883b16 gnu: r-rcpparmadillo: Update to 0.6.700.3.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 458b47e31b gnu: armadillo: Update to 6.700.4. 
* gnu/packages/maths.scm (armadillo): Update to 6.700.4.
 2016-04-20 14:21:30 +02:00
Alex Kost fc1adab148 gnu: packages: Use 'search-patches' everywhere. 
* gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/algebra.scm: Likewise.
* gnu/packages/animation.scm: Likewise.
* gnu/packages/apr.scm: Likewise.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/autotools.scm: Likewise.
* gnu/packages/avahi.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bash.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/ci.scm: Likewise.
* gnu/packages/cmake.scm: Likewise.
* gnu/packages/cpio.scm: Likewise.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/dico.scm: Likewise.
* gnu/packages/doxygen.scm: Likewise.
* gnu/packages/ebook.scm: Likewise.
* gnu/packages/elf.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/ftp.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gawk.scm: Likewise.
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/gd.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/gnuzilla.scm: Likewise.
* gnu/packages/graphics.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/icu4c.scm: Likewise.
* gnu/packages/idutils.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/imagemagick.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/ldc.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libevent.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libunwind.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/llvm.scm: Likewise.
* gnu/packages/lsh.scm: Likewise.
* gnu/packages/lua.scm: Likewise.
* gnu/packages/lxqt.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/mit-krb5.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/multiprecision.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ninja.scm: Likewise.
* gnu/packages/nvi.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/orpheus.scm: Likewise.
* gnu/packages/ots.scm: Likewise.
* gnu/packages/parallel.scm: Likewise.
* gnu/packages/patchutils.scm: Likewise.
* gnu/packages/pcre.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/polkit.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/qemu.scm: Likewise.
* gnu/packages/qt.scm: Likewise.
* gnu/packages/ratpoison.scm: Likewise.
* gnu/packages/rdf.scm: Likewise.
* gnu/packages/readline.scm: Likewise.
* gnu/packages/rush.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/sdl.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/tcsh.scm: Likewise.
* gnu/packages/texinfo.scm: Likewise.
* gnu/packages/tls.scm: Likewise.
* gnu/packages/tor.scm: Likewise.
* gnu/packages/tv.scm: Likewise.
* gnu/packages/valgrind.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/vtk.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/xiph.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
* gnu/packages/zip.scm: Likewise.
 2016-04-14 10:38:21 +03:00
Roel Janssen ec8c7e4734 gnu: Add r-pracma. 
* gnu/packages/maths.scm (r-pracma): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-12 14:55:10 -04:00
John Darrington 9c45c51992 gnu: Add c-graph. 
* gnu/packages/maths.scm (c-graph): New variable.
 2016-04-09 09:16:48 +02:00
Andreas Enge 53696f10c1 gnu: Add cddlib. 
* gnu/packages/maths.scm (cddlib): New variable.
 2016-04-05 19:22:36 +02:00
Andreas Enge b146763a86 gnu: Add 4ti2. 
* gnu/packages/maths.scm (4ti2): New variable.
 2016-04-05 18:48:02 +02:00
John Darrington 0b65f1a013 gnu: Move pspp from maths.scm to statistics.scm 
* gnu/packages/maths.scm (pspp): Deleted.
* gnu/packages/statistics.scm (pspp): New variable.
 2016-04-04 07:15:14 +02:00
Efraim Flashner fd7575d479 gnu: pspp: Update to 0.10.1. 
* gnu/packages/maths.scm (pspp): Update to 0.10.1.
 2016-04-03 08:47:35 +03:00
Efraim Flashner f04433773d gnu: glpk: Update to 4.60. 
* gnu/packages/maths.scm (glpk): Update to 4.60.
 2016-04-01 16:52:54 +03:00
Efraim Flashner e12f047f75 gnu: pspp: Update to 0.10.0. 
* gnu/packages/maths.scm (pspp): Update to 0.10.0.
[inputs]: Switch gtk+-2 to gtk+, gtksourceview-2 to gtksourceview.
 2016-03-26 22:39:29 +03:00
Eric Bavier dfdf571688 gnu: petsc: Fix compiler configuration references. 
* gnu/packages/maths.scm (petsc)[arguments]: When patching compiler
  driver paths, do not assume they come from fortran input.
 2016-03-16 18:32:25 -05:00
Eric Bavier d588422e13 gnu: slepc: Set origin file-name. 
* gnu/packages/maths.scm (slepc)[source]: Add file-name.
 2016-03-16 18:32:25 -05:00
Efraim Flashner eb4f2cd7e3 gnu: glpk: Update to 4.59. 
* gnu/packages/maths.scm (glpk): Update to 4.59.
 2016-03-12 23:07:09 +02:00
Andreas Enge 289adba7a3 gnu: gnuplot: Use texlive-minimal instead of texlive-bin. 
* gnu/packages/maths.scm (gnuplot)[inputs]: Replace texlive-bin by
  texlive-minimal.
 2016-03-09 22:36:45 +01:00
Efraim Flashner 723a6910ca gnu: glpk: Update to 4.58. 
* gnu/packages/maths.scm (glpk): Update to 4.58.
 2016-02-18 15:35:28 +02:00
Andreas Enge ec4130b7e7 gnu: gnuplot: Update to 5.0.2. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
 2016-02-13 13:37:49 +01:00
Eric Bavier c7b08410de gnu: gmsh: Update to 2.11.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
  [arguments]: Replace 'check phase.
 2016-01-06 10:49:23 -06:00
Fabian Harfert 45147b0caa gnu: Add xaos. 
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-12-31 11:29:43 +03:00
Ricardo Wurmus e22d4ca4c4 gnu: Add r-rcpparmadillo. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
 2015-12-21 16:05:37 +01:00
Ricardo Wurmus b15e47f9e6 gnu: Add armadillo. 
* gnu/packages/maths.scm (armadillo): New variable.
 2015-12-21 15:47:40 +01:00
Eric Bavier 97003b5ccc gnu: gnuplot: Update to 5.0.1. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
  (native-inputs): 'texlive' -> 'texlive-bin'.
 2015-11-24 11:41:46 -06:00
Eric Bavier 9cf5245497 gnu: slepc: Update to 3.6.2. 
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
  [arguments]: Append "/lib" to arpack configure flag.  Use 'inputs'
  rather than '%build-inputs' in 'configure phase.
 2015-11-20 11:58:40 -06:00
Eric Bavier 32187d99bb gnu: petsc: Update to 3.6.2. 
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
 2015-11-20 11:58:40 -06:00
Eric Bavier c69fa4380a gnu: mumps: Update to 5.0.1. 
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
 2015-11-20 11:58:40 -06:00
宋文武 a124bbd2f4 gnu: Adjust formatting as recommended by 'guix lint'. 
* gnu/packages/aidc.scm (barcode, qrencode),
  gnu/packages/bash.scm (bash, bash-completion),
  gnu/packages/busybox.scm (busybox),
  gnu/packages/cdrom.scm (cdparanoia),
  gnu/packages/cmake.scm (cmake),
  gnu/packages/conkeror.scm (conkeror),
  gnu/packages/cook.scm (cook),
  gnu/packages/curl.scm (curl),
  gnu/packages/docbook.scm (docbook-xsl),
  gnu/packages/enlightenment.scm (enlightenment),
  gnu/packages/games.scm (abbaye),
  gnu/packages/geeqie.scm (exiv2),
  gnu/packages/gimp.scm (gegl),
  gnu/packages/gl.scm (glu, freeglut, ftgl),
  gnu/packages/glib.scm (glib),
  gnu/packages/gnome.scm (orbit2, gconf, geocode-glib),
  gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base),
  gnu/packages/linux.scm (util-linux),
  gnu/packages/lisp.scm (gcl, ecl),
  gnu/packages/maths.scm (gnuplot, hdf5),
  gnu/packages/ssh.scm (dropbear),
  gnu/packages/web.scm (json-c): Remove tabulations and trailing
  white spaces or reformat to fit within 80 columns.
* gnu/packages/audio.scm (aubio),
  gnu/packages/emacs.scm (emacs-s),
  gnu/packages/engineering.scm (geda-gaf),
  gnu/packages/games.scm (dosbox),
  gnu/packages/gnome.scm (gusb),
  gnu/packages/gtk.scm (gtk+),
  gnu/packages/guile.scm (guile-wisp),
  gnu/packages/hurd.scm (hurd-headers),
  gnu/packages/wm.scm (i3-wm): Adjust synopsis or description.
 2015-11-13 23:45:55 +08:00
Efraim Flashner 0534dd93ce gnu: gsl: Update to 2.1. 
* gnu/packages/maths.scm (gsl): Update to 2.1.
 2015-11-12 16:53:43 +02:00
Efraim Flashner 295fc0829b gnu: pspp: Use gtksourceview-2. 
* gnu/packages/maths.scm (pspp)[inputs]: Use gtksourceview-2.
 2015-11-10 13:58:25 +02:00
Efraim Flashner d8c97beb06 gnu: Add wcalc. 
* gnu/packages/maths.scm (wcalc): New variable.
 2015-11-08 23:01:50 +02:00
Efraim Flashner 19659accef gnu: octave: Upgrade to 4.0.0. 
* gnu/packages/maths.scm (octave): Update to 4.0.0.
 2015-11-08 18:44:06 +02:00
Efraim Flashner 552cb93c0a gnu: glpk: Update to 4.57. 
* gnu/packages/maths.scm (glpk): Update to 4.57.
 2015-11-08 16:27:39 +02:00
Efraim Flashner 5adbe65fec gnu: gsl: Enable tests. 
* gnu/packages/maths.scm (gsl)[arguments]: Enable tests for i686-linux.
 2015-11-02 21:04:18 +02:00
Efraim Flashner f133955122 gnu: gsl: Update to 2.0. 
* gnu/packages/maths.scm (gsl): Update to 2.0.
  [source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
 2015-11-02 21:04:18 +02:00
Ricardo Wurmus bd0b4379b2 gnu: openblas: Make substitutable on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Make package
  substitutable when the system is MIPS.
 2015-10-30 17:47:54 +01:00
Ricardo Wurmus 8a637e79ed gnu: openblas: Set TARGET to SICORTEX on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Add "TARGET=SICORTEX" to
  make-flags when building for MIPS.
 2015-10-30 17:47:54 +01:00
Ricardo Wurmus 69851c59c7 gnu: openblas: Update to 0.2.15. 
* gnu/packages/maths.scm (openblas): Update to 0.2.15.
 2015-10-29 15:44:31 +01:00
Efraim Flashner cbe9505778 gnu: units: Update to 2.12. 
* gnu/packages/maths.scm (units): Update to 2.12.
 2015-10-20 09:41:54 +03:00
Andreas Enge 127cbd85c0 gnu: glpk: Update to 4.56. 
* gnu/packages/maths.scm (glpk): Update to 4.56.
 2015-10-02 20:07:17 +02:00
Andreas Enge 71923a91b1 gnu: openblas: Fix configure flags on armhf and take target system into account for cross building. 
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
  and enable runtime cpu detection only on x86 systems. Take the target
  system into account when cross compiling.
 2015-10-01 19:35:16 +02:00
Ludovic Courtès 75710da667 Merge branch 'master' into core-updates 2015-09-13 21:28:01 +02:00
Andreas Enge 194c7f95f1 gnu: Add FLANN. 
* gnu/packages/maths.scm (flann): New variable.
 2015-09-06 19:34:09 +02:00
Ludovic Courtès 96c4621056 gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases. 
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
  plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
  Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
 2015-08-29 01:25:08 +02:00
Ludovic Courtès c01876b1af gnu: pspp: Update to 0.8.5. 
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
  [native-inputs]: Add TEXINFO.
 2015-07-21 01:12:34 +02:00
Alex Kost e881752c39 gnu packages: Clean up synopses and descriptions. 
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
  gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
  gnu/packages/code.scm, gnu/packages/compression.scm,
  gnu/packages/databases.scm, gnu/packages/enchant.scm,
  gnu/packages/firmware.scm, gnu/packages/fonts.scm,
  gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
  gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
  gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
  gnu/packages/haskell.scm, gnu/packages/language.scm,
  gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
  gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
  gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
  gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
  gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
  gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
  gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
  gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
  gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
  gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
  gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
  gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
  Fix typos.  Trim long lines.  Add missing periods in the end of sentences.
  Use double spaces between sentences.  Remove trailing whitespaces.
 2015-07-18 13:05:01 +03:00
Alex Kost 7c125ce023 gnu packages: Avoid description lines with leading "(". 
* gnu/packages/curl.scm (curl): Reformat description to avoid a line
  beginning with "(" because such lines break font-lock highlighting
  in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
 2015-07-18 13:05:01 +03:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier 8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00