Commit Graph

14513 Commits

Author SHA1 Message Date
Ricardo Wurmus ce54f5db7d
gnu: gfortran-5: Move definition before "gfortran".
This is a follow-up to commit cb4805e34c.

* gnu/packages/gcc.scm (gfortran-5): Move definition.
2017-03-23 16:34:17 +01:00
Ricardo Wurmus cb4805e34c
gnu: gfortran: Change default version to gfortran-5.
* gnu/packages/gcc.scm (gfortran): Point to gfortran-5.
2017-03-23 15:37:24 +01:00
Efraim Flashner 0371b345e8
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-23 14:53:33 +02:00
Efraim Flashner 8be563a5a3
gnu: dtc: Build with flex-2.6.1.
* gnu/packages/bootloaders.scm (dtc)[native-inputs]: Use flex-2.6.1 and
not flex.
2017-03-23 14:40:40 +02:00
Peter Mikkelsen c53af0016e
gnu: idris: Update to 0.99.1.
* gnu/packages/idris.scm (idris): Update to 0.99.1.
[inputs]: Add ghc-code-page.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-23 12:59:03 +01:00
Peter Mikkelsen df7309fc6e
gnu: Add ghc-code-page.
* gnu/packages/haskell.scm (ghc-code-page): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-23 12:59:03 +01:00
Ricardo Wurmus 939b6b113b
gnu: star: Update to 2.5.3a.
* gnu/packages/bioinformatics.scm (star): Update to 2.5.3a.
2017-03-23 11:21:08 +01:00
Efraim Flashner d5ceeb5a2d
gnu: scotch: Build with flex-2.6.1.
* gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not
flex.
2017-03-23 07:32:31 +02:00
Efraim Flashner 5302eba611
gnu: libffcall: Remove aarch64-linux from supported systems.
* gnu/packages/libffcall.scm (libffcall)[supported-systems]: New field,
remove aarch64-linux.
[home-page]: Use https.
2017-03-23 07:32:26 +02:00
Tobias Geerinckx-Rice b27bd0b057
gnu: youtube-dl: Update to 2017.03.22.
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.22.
2017-03-23 02:53:18 +01:00
Tobias Geerinckx-Rice a06cd95ab0
gnu: python-natsort: Update to 5.0.2.
* gnu/packages/python.scm (python-natsort): Update to 5.0.2.
2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice e17a12482b
gnu: python2-futures: Update to 3.0.5.
* gnu/packages/python.scm (python2-futures): Update to 3.0.5.
2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 06fe79f263
gnu: python-rauth: Update to 0.7.3.
* gnu/packages/python.scm (python-rauth): Update to 0.7.3.
2017-03-23 02:53:17 +01:00
Tobias Geerinckx-Rice 36e0d9db90
gnu: python-ipaddress: Update to 1.0.18.
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.18.
2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 543782e1ff
gnu: python-appdirs: Update to 1.4.3.
* gnu/packages/python.scm (python-appdirs): Update to 1.4.3.
2017-03-23 02:53:16 +01:00
Tobias Geerinckx-Rice 80e8d8517a
gnu: python-beautifulsoup4: Update to 4.5.3.
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.5.3.
2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 7c4279322e
gnu: python-drmaa: Update to 0.7.7.
* gnu/packages/python.scm (python-drmaa): Update to 0.7.7.
2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice fd2662e950
gnu: python-sqlalchemy-utils: Update to 0.32.13.
* gnu/packages/python.scm (python-sqlalchemy-utils): Update to 0.32.13.
2017-03-23 02:53:15 +01:00
Tobias Geerinckx-Rice 745d85b7db
gnu: python-pafy: Update to 0.5.3.1.
* gnu/packages/python.scm (python-pafy): Update to 0.5.3.1.
2017-03-23 02:53:14 +01:00
Leo Famulari e20dafd0a1
gnu: gpsbabel: Fix a build failure with GCC 5.
* gnu/packages/gps.scm (gpsbabel)[arguments]: Add -fPIC to #:configure-flags.
2017-03-22 17:04:46 -04:00
Efraim Flashner 283f04b053
gnu: libffcall: Set source file-name.
* gnu/packages/libffcall.scm (libffcall)[source]: Add file-name field.
[home-page]: Use https.
2017-03-22 22:36:43 +02:00
Kei Kebreau 359e9c4215
gnu: chicken: Update to 4.12.0.
* gnu/packages/scheme.scm (chicken): Update to 4.12.0.
2017-03-22 15:31:17 -04:00
Efraim Flashner 44cba47e93
gnu: wine: Build with flex-2.6.1.
* gnu/packages/wine.scm (wine)[native-inputs]: Use flex-2.6.1 and not
flex.
2017-03-22 21:06:46 +02:00
Efraim Flashner 575a6f0f8a
gnu: binutils-vc4: Build with flex-2.6.1.
* gnu/packages/embedded.scm (binutils-vc4)[native-inputs]: Use
flex-2.6.1 and not flex.
2017-03-22 19:27:00 +02:00
Leo Famulari 112d645ffa
gnu: dovecot: Update to 2.2.28.
* gnu/packages/mail.scm (dovecot): Update to 2.2.28.
2017-03-22 13:04:29 -04:00
Danny Milosavljevic 9b7a9580d4
gnu: rustc: Honor max line length.
* gnu/packages/rust.scm (rustc)[arguments]: patch-tests: Honor max line
length.
2017-03-22 17:41:44 +01:00
Ludovic Courtès 61a3137bdd
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 73a4645.
2017-03-22 16:05:46 +01:00
Efraim Flashner 493ae57eca
gnu: binutils-vc4: Set source file-name.
* gnu/packages/embedded.scm (binutils-vc4)[source]: Add file-name field.
2017-03-22 16:10:45 +02:00
Ricardo Wurmus dc8a34ed46
gnu: freeimage: Fix build with GCC 5.
* gnu/packages/patches/freeimage-fix-build-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
2017-03-22 14:45:44 +01:00
Efraim Flashner aeb6fe5fa0
gnu: autoconf-archive: Update to 2017.03.21.
* gnu/packages/autotools.scm (autoconf-archive): Update to 2017.03.21.
2017-03-22 15:35:59 +02:00
Ludovic Courtès 5cd074ea32
gnu: guile: Add 'guile-next' as a deprecated alias.
This is a followup to f6396d862f.

* gnu/packages/guile.scm (guile-next): New variable.
2017-03-22 14:05:58 +01:00
Danny Milosavljevic 326249bab8
gnu: rustc: End resultless phases in #t.
* gnu/packages/rust.scm (rustc): End resultless phases in #t.
2017-03-22 12:59:32 +01:00
Ricardo Wurmus 54262c5435
gnu: python-pysam: Run tests in parallel.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
2017-03-22 12:33:28 +01:00
Ricardo Wurmus 71dbf592c4
gnu: python-pysam: Run tests before installation.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
2017-03-22 12:33:28 +01:00
Ricardo Wurmus 879b521cd0
gnu: python-pysam: Update to 0.10.0.
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
2017-03-22 12:33:24 +01:00
Ricardo Wurmus d553cd6015
gnu: python-pysam: Run tests in parallel.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nose tests in
parallel.
2017-03-22 12:21:39 +01:00
Ricardo Wurmus 611154efc8
gnu: python-pysam: Run tests before installation.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust check
phase to be run before installation.
2017-03-22 12:21:39 +01:00
Ricardo Wurmus 9488776a18
gnu: python-pysam: Update to 0.10.0.
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.10.0.
2017-03-22 12:21:38 +01:00
Efraim Flashner 378de69c59
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-22 12:57:37 +02:00
Efraim Flashner 0e7c3ba1c0
gnu: perl-mojolicious: Update to 7.29.
* gnu/packages/perl-web.scm (perl-mojolicious): Update to 7.29.
2017-03-22 12:56:23 +02:00
Efraim Flashner c70b50efb9
gnu: perl-io-compress: Update to 2.074.
* gnu/packages/compression.scm (perl-io-compress): Update to 2.074.
[propagated-inputs]: Update minimum versions to 2.074.
2017-03-22 12:50:36 +02:00
Efraim Flashner c0b7b797a2
gnu: perl-compress-raw-bzip2: Update to 2.074.
* gnu/packages/compression.scm (perl-compress-raw-bzip2): Update to 2.074.
2017-03-22 12:45:55 +02:00
Efraim Flashner 02b067d782
gnu: perl-compress-raw-zlib: Update to 2.074.
* gnu/packages/compression.scm (perl-compress-raw-zlib): Update to 2.074.
2017-03-22 12:40:05 +02:00
Leo Famulari d8be338f16
gnu: openssh: Update to 7.5p1.
* gnu/packages/ssh.scm (openssh): Update to 7.5p1.
2017-03-22 02:37:31 -04:00
Leo Famulari 22f25392cf
gnu: ntp: Update to 4.2.8p10 [security fixes].
Fixes CVE-2016-9042 and CVE-2017-{6451,6452,6455,6458,6459,6460,6462,6463,6464}
and others. See 'NEWS' in the source code for more information.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p10.
2017-03-22 01:41:41 -04:00
Tobias Geerinckx-Rice 8e71896340
gnu: python-psycopg2: Update to 2.6.2.
* gnu/packages/python.scm (python-psycopg2): Update to 2.6.2.
2017-03-22 02:03:35 +01:00
Tobias Geerinckx-Rice 35e1a0f1a7
gnu: python-zope-component: Update to 4.3.0.
* gnu/packages/python.scm (python-zope-component): Update to 4.3.0.
[source]: Use pypi-uri.
2017-03-22 02:03:35 +01:00
Tobias Geerinckx-Rice c56ad5e291
gnu: python-atomicwrites: Update to 1.1.5.
* gnu/packages/python.scm (python-atomicwrites): Update to 1.1.5.
2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice 4c4d4df393
gnu: python-texttable: Update to 0.8.7.
* gnu/packages/python.scm (python-texttable): Update to 0.8.7.
2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d5c183d134
gnu: python-feedgenerator: Update to 1.9.
* gnu/packages/python.scm (python-feedgenerator): Update to 1.9.
2017-03-22 02:03:34 +01:00
Tobias Geerinckx-Rice d25bee2600
gnu: python-wrapt: Update to 1.10.8.
* gnu/packages/python.scm (python-wrapt): Update to 1.10.8.
[source]: Use pypi-uri.
2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice b9463fdba2
gnu: python-py: Update to 1.4.32.
* gnu/packages/python.scm (python-py): Update to 1.4.32.
2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 5095bc7d71
gnu: python-sphinx-cloud-sptheme: Update to 1.8.0.
* gnu/packages/python.scm (python-sphinx-cloud-sptheme): Update to 1.8.0.
2017-03-22 02:03:33 +01:00
Tobias Geerinckx-Rice 9e59478f8d
gnu: python-wcwidth: Update to 0.1.7.
* gnu/packages/python.scm (python-wcwidth): Update to 0.1.7.
[source]: Use pypi-uri.
2017-03-22 02:03:32 +01:00
Tobias Geerinckx-Rice 4ffbe8c6d7
gnu: python-markdown: Update to 2.6.8.
* gnu/packages/python.scm (python-markdown): Update to 2.6.8.
2017-03-22 02:03:32 +01:00
Tobias Geerinckx-Rice 2d431b0130
gnu: dns: Return #t instead of something undefined.
* gnu/packages/dns.scm (yadifa, knot)[arguments]: Return #t after calling
‘substitute*’.
(knot)[source]: Return #t after calling ‘delete-file-recursively’.
2017-03-22 02:03:31 +01:00
Efraim Flashner 4f7a9e0bff
gnu: vapoursynth: Update to 37.
* gnu/packages/video.scm (vapoursynth): Update to 37.
2017-03-21 22:36:33 +02:00
Efraim Flashner 60092c181c
gnu: zimg: Update to 2.5.
* gnu/packages/image.scm (zimg): Update to 2.5.
2017-03-21 22:35:32 +02:00
Leo Famulari 049e02eaa2
gnu: libesmtp: Add alternate source URL.
* gnu/packages/mail.scm (libesmtp)[source]: Add alternate URL.
2017-03-21 16:33:08 -04:00
Leo Famulari a9681c74ca
gnu: python-pillow: Fix test failures with freetype-2.7.
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow, python2-pillow)[source]: Use it.
2017-03-21 16:20:10 -04:00
Efraim Flashner 83a3464793
gnu: openblas: Add support for aarch64.
* gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as
substitutable, build for target ARMv8.
2017-03-21 22:03:05 +02:00
Rodger Fox a42619e5e2
gnu: Add lmms.
* gnu/packages/music.scm (lmms): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:37:29 -04:00
Arun Isaac 0b608ec4ce
gnu: Add megaglest.
* gnu/packages/games.scm (megaglest): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
Arun Isaac fb731c9232
gnu: Add megaglest-data.
* gnu/packages/games.scm (megaglest-data): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
Efraim Flashner 8ea71f2005
gnu: ots: Use 'modify-phases' syntax.
* gnu/packages/ots.scm (ots)[arguments]: Use 'modify-phases' syntax.
2017-03-21 20:58:52 +02:00
Efraim Flashner b1d3e0a93b
gnu: ots: Add download mirror.
* gnu/packages/ots.scm (ots)[source]: Add Debian mirror.
2017-03-21 20:58:51 +02:00
rennes 8e4b7b7514
gnu: xf86-video-vmware: Fix build failure due to missing LLVM.
* gnu/packages/xorg.scm (xf86-video-vmware)[inputs]: Add llvm.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 14:24:37 -04:00
Leo Famulari 7fc72c7731
gnu: libcmis: Update to 0.5.1.
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.1.
[source]: Use new source URL. Remove obsolete patch
'libcmis-fix-test-onedrive.patch'.
[home-page]: Update URL.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-21 13:38:13 -04:00
Efraim Flashner a160778cba
gnu: x265: Fix build on aarch64.
* gnu/packages/video.scm (x265)[arguments]: On aarch64 add a
configure-flag to enable PIC.
2017-03-21 18:01:05 +02:00
Kei Kebreau 4b0e636701
gnu: Adjust asciidoc-related build options.
Commits 9099a45792 and
3078821d13 make many package inputs and
build configurations related to asciidoc obsolete.

* gnu/packages/compton.scm (compton)[inputs]: Remove docbook-xml,
libxml2 and libxslt.
* gnu/packages/mail.scm (offlinemap)[native-inputs]: Remove libxslt.
* gnu/packages/linux.scm (btrfs-progs)[native-inputs]: Remove docbook-xml.
(perf)[inputs]: Remove docbook-xml and libxslt.
* gnu/packages/text-editors.scm (kakoune)[native-inputs]: Remove libxslt.
* gnu/packages/version-control.scm (cgit)[native-inputs]: Remove
docbook-xml, docbook-xsl, libxml2 and libxslt.
(cvs-fast-export)[native-inputs]: Remove docbook-xml, docbook-xsl,
libxml2 and libxslt.
* gnu/packages/web.scm (qutebrowser)[native-inputs]: Remove docbook-xml,
docbook-xsl, libxml2, and libxslt.
(tinyproxy)[native-inputs]: Remove docbook-xml, docbook-xsl, libxml2 and
libxslt.
* gnu/packages/wm.scm (awesome)[make-flags]: Remove XML_CATALOG_FILES flag.
(i3-wm)[inputs]: Remove docbook-xml.
[native-inputs]: Add libxml2.
2017-03-21 11:15:08 -04:00
Arun Isaac ed428a58ec
gnu: Add swaks.
* gnu/packages/mail.scm (swaks): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 15:42:44 +01:00
Marius Bakke 3411937b15
gnu: git: Update to 2.12.1.
* gnu/packages/version-control.scm (git): Update to 2.12.1.
2017-03-21 13:45:57 +01:00
humanitiesNerd 6330ece9e3
gnu: Add perl-ole-storage-lite.
* gnu/packages/perl.scm (perl-ole-storage-lite): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:47 +01:00
humanitiesNerd 2b9d2df799
gnu: Add perl-crypt-rc4.
* gnu/pakages/perl.scm (perl-crypt-rc4): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:43 +01:00
Marius Bakke 4b9a5bd990
gnu: kodi: Wrap executable so it finds libcurl.
* gnu/packages/kodi.scm (kodi)[arguments]: Add 'wrap' phase.
2017-03-21 12:37:41 +01:00
Leo Famulari f826c8c7ee
gnu: go@1.4, go@1.7: Skip test that fails with tzdata-2017a.
* gnu/packages/golang.scm (go-1.4, go-1.7)[arguments]: Disable the test
TestParseInLocation in 'prebuild' phase.
2017-03-21 01:30:39 -04:00
Marius Bakke 3b4efb1f45
gnu: dtc: Update to 1.4.4.
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.4.
[source]: Use mirror://kernel.org.
2017-03-21 01:13:06 +01:00
Marius Bakke d3d92ec2ba
gnu: greenisland: Update to 0.9.0.1.
* gnu/packages/display-managers.scm (greenisland): Update to 0.9.0.1.
2017-03-21 01:13:06 +01:00
Marius Bakke 38190ea5ef
gnu: vim: Update to 8.0.0494.
* gnu/packages/patches/vim-CVE-2017-5953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0494.
[source]: Remove patch.
(vim-full)[arguments]: Add two phases to drop tests and start xorg.
[native-inputs]: Add XORG-SERVER.
2017-03-20 23:35:39 +01:00
Marius Bakke f69e20341f
gnu: kodi: Update to 18.0_alpha-0-b35147e.
* gnu/packages/kodi.scm (libdvdnav/kodi, libdvdread/kodi, libdvdcss/kodi): New
variables.
(kodi): Update to 18.0_alpha-0-b35147e.
[source]: Download from git. Unbundle more stuff.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flag to disable nonfree components. Rework phases
to patch bundled software and bootstrap more libraries.
[native-inputs]: Remove CMAKE, DOXYGEN, GAWK and WHICH. Add LIBDVDCSS/KODI,
LIBDVDNAV/KODI and LIBDVDREAD/KODI.
[inputs]: Remove BOOST, BZIP2, ENCA, GPERF, JASPER, LIBMODPLUG, LIBSAMPLERATE,
LIBXMU, LIBXT, MESA-UTILS, SDL2 and UNZIP. Add FMT, GIFLIB, LCMS and LIBDRM.
[license]: Update for remaining software bundles.
2017-03-20 23:35:39 +01:00
Marius Bakke 0a15ee7b63
gnu: Add fmt.
* gnu/packages/pretty-print.scm (fmt): New variable.
2017-03-20 23:35:39 +01:00
Leo Famulari deee8a9dfc
gnu: Remove leftover patch.
* gnu/packages/patches/openjpeg-use-after-free-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-20 18:25:02 -04:00
Leo Famulari 957699ee92
gnu: openjpeg: Remove obsolete patches.
* gnu/packages/patches/openjpeg-CVE-2016-5157.patch,
gnu/packages/patches/openjpeg-CVE-2016-7163.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg)[source]: Remove them.
2017-03-20 18:24:58 -04:00
Julien Lepiller 4140b86bea
gnu: php: Update to 7.1.3.
* gnu/packages/php.scm (php): Update to 7.1.3.
2017-03-20 23:09:22 +01:00
Ricardo Wurmus bd0c62315b
gnu: bristol: Fix build failure with alsa-lib 1.1.x.
* gnu/packages/music.scm (bristol)[arguments]: Add build phase to fix build
failure with alsa-lib 1.1.x.
2017-03-20 22:44:26 +01:00
Tobias Geerinckx-Rice 6809d9377b
gnu: ngircd: Use HTTPS.
* gnu/packages/messaging.scm (ngircd)[source, home-page]: Use HTTPS.
2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 07b7a66526
gnu: ngircd: Use the phrase ‘IRC’ in its description.
* gnu/packages/messaging.scm (ngircd)[description]: Use ‘IRC’ with @dfn.
2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 341ed63f47
gnu: ngircd: Use ‘modify-phases’ syntax.
* gnu/packages/messaging.scm (ngircd)[arguments]: Use ‘modify-phases’.
2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 4fd95d9170
gnu: ngircd: Update to 24.
* gnu/packages/messaging.scm (ngircd): Update to 24.
[source]: Remove upstreamed DNS lookup patch.
* gnu/packages/patches/ngircd-no-dns-in-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-20 22:44:06 +01:00
Tobias Geerinckx-Rice 500fc65b5b
gnu: znc: Run test suite.
* gnu/packages/messaging.scm (znc)[arguments]: Enable tests.  Add an
‘unpack-googletest’ phase and add ‘--with-gtest=’ to #:configure-flags.
[native-inputs]: Add googletest source.
2017-03-20 22:44:05 +01:00
Tobias Geerinckx-Rice f0bce02664
gnu: simple-scan: Update to 3.24.0.
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.0.
2017-03-20 22:44:05 +01:00
Ricardo Wurmus e2c4fe7c62
gnu: Add r-cairo.
* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
Hartmut Goebel 94e24d8124
gnu: Add comments on why setting QT_QPA_PLATFORM for tests.
* gnu/packages/astronomy.scm (stellarium): Add comment.
* gnu/packages/display-managers.scm (greenisland): dito.
* gnu/packages/kde-frameworks.scm (kguiaddons, kwidgetsaddons,
  kcompletion, baloo, kbookmarks, kconfigwidgtes, kdesignerplugin,
  kemoticons, kglobalaccel, kiconthemes, kio, knewstuff, kparts,
  kpeople, krunner, kservice, ktexteditor, ktextwidgets, kxmlgui,
  plasma-framework): dito.
* gnu/packages/qt.scm (qtsvg): dito.
2017-03-20 20:56:49 +01:00
Efraim Flashner 4e6509b27f
gnu: mesa: Correct another typo.
* gnu/packages/gl.scm (mesa)[arguments]: Fix typo (svrast -> swrast).
2017-03-20 21:44:00 +02:00
Kei Kebreau 0b5d078f8b
gnu: Add freedoom.
* gnu/packages/games.scm (freedoom): New variable.
2017-03-20 14:29:44 -04:00
Efraim Flashner 80042ae93d
gnu: wget: Fix test-504 failures.
* gnu/packages/wget.scm (wget)[source]: Add patch.
* gnu/packages/patches/wget-fix-504-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-20 20:07:56 +02:00
Efraim Flashner 6f9ba4c91c
gnu: Remove wxwidgets@2.8.
* gnu/packages/wxwidgets.scm (wxwidgets@2.8): Remove variable.
2017-03-20 18:33:30 +02:00
Efraim Flashner 36e17ab417
gnu: audacity: Use gtk+@3.
* gnu/packages/audacity.scm (audacity)[inputs]: Remove wxwidgets-gtk2,
gtk+@2, add wxwidgets and gtk+.
2017-03-20 18:04:01 +02:00
Efraim Flashner 2314474b01
gnu: wxwidgets: Build with webkitgtk.
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Remove webkitgtk@2.4,
add webkitgtk.
2017-03-20 18:02:41 +02:00
Ricardo Wurmus 4f9998c66f
gnu: snakemake: Add runtime dependencies.
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-wrapt and
python-requests.
2017-03-20 15:13:19 +01:00
Leo Famulari 0420e89682
gnu: mpd: Update to 0.20.6.
* gnu/packages/mpd.scm (mpd): Update to 0.20.6.
2017-03-19 21:55:09 -04:00
Kei Kebreau 1a0c4437ab
gnu: Add deutex.
gnu/packages/game-development.scm (deutex): New variable.
2017-03-19 21:43:05 -04:00
Arun Isaac f75b1400ee
gnu: obnam: Enable tests.
* gnu/packages/backup.scm (obnam)[arguments]: Replace 'check' phase with
  custom function.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:32 +01:00
Arun Isaac 315944a393
gnu: Add python-pylint.
* gnu/packages/python.scm (python-pylint, python2-pylint): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
Arun Isaac 61550dedf3
gnu: Add python2-coverage-test-runner.
* gnu/packages/python.scm (python2-coverage-test-runner): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
Arun Isaac 23db3fc67d
gnu: Add python-configparser.
* gnu/packages/python.scm (python-configparser, python2-configparser): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
Arun Isaac 965a083ed2
gnu: Add python2-backports-functools-lru-cache.
* gnu/packages/python.scm (python2-backports-functools-lru-cache): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
Arun Isaac 6ba0af7960
gnu: Add python-isort.
* gnu/packages/python.scm (python-isort, python2-isort): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
Arun Isaac d5ef113c05
gnu: Add python-astroid.
* gnu/packages/python.scm (python-astroid, python2-astroid): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
Arun Isaac 6fdbd86d0f
gnu: Add libircclient.
* gnu/packages/messaging.scm (libircclient): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 19:18:06 -04:00
Mark H Weaver f67337e23e
Merge branch 'master' into core-updates 2017-03-19 18:52:12 -04:00
Ludovic Courtès b99eec83b8
gnu: librep: Update to 0.92.6.
* gnu/packages/sawfish.scm (librep): Update to 0.92.6.
[arguments]: New field.
[native-inputs]: Add AUTOCONF-WRAPPER, AUTOMAKE, and LIBTOOL.
2017-03-19 23:42:58 +01:00
Ludovic Courtès d5c969ce0c
gnu: lsh: Use libc's argp instead of the bundled one.
* gnu/packages/ssh.scm (lsh)[arguments] <#:configure-flags>: Add
--with-system-argp and CPPFLAGS=-DHAVE_ARGP_PARSE.
<#:phases>: In 'pre-configure' phase, modify src/Makefile.in.
2017-03-19 23:42:57 +01:00
Ludovic Courtès 5927a843b4
gnu: python-minimal@2: Add dependencies on libffi and zlib.
* gnu/packages/python.scm (python2-minimal)[inputs]: Add LIBFFI and ZLIB.
[arguments]: Remove.
2017-03-19 23:42:57 +01:00
Ludovic Courtès 4ed0628737
gnu: elogind: Build with gperf 3.0.
* gnu/packages/gperf.scm (gperf-3.0): New variable.
* gnu/packages/freedesktop.scm (elogind)[native-inputs]: Use GPERF-3.0
instead of GPERF.
2017-03-19 23:42:57 +01:00
rennes e05fc441cd
gnu: Add pdfgrep.
* guix/gnu/packages/pdf.scm (pdfgrep): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 18:30:10 -04:00
Leo Famulari 4c20b0bcf7
gnu: graphite2: Fix test failure caused by rounding error on 32-bit CPUs.
* gnu/packages/patches/graphite2-ffloat-store.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (graphite2): Use it.
2017-03-19 17:32:44 -04:00
Mark H Weaver 8299c697af
gnu: linux-libre: Update to 4.10.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.4.
(%linux-libre-hash): Update hash.
2017-03-19 17:18:15 -04:00
Mark H Weaver 92c42164a2
gnu: linux-libre@4.9: Update to 4.9.16.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.16.
2017-03-19 17:16:38 -04:00
Mark H Weaver 9baf0171a4
gnu: linux-libre@4.4: Update to 4.4.55.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.55.
2017-03-19 17:14:56 -04:00
Danny Milosavljevic fc1bfca253
gnu: u-boot: Update to 2017.03.
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.03.
2017-03-19 21:35:17 +01:00
Mark H Weaver 717c659630
gnu: mesa: Fix another typo.
This is a followup to commit 2a8b89c27f.

* gnu/packages/gl.scm (mesa)[arguments]: Fix typo (galluim -> gallium).
2017-03-19 16:05:16 -04:00
Mark H Weaver 6191fef4e0
gnu: icecat: Add selected fixes from upstream mozilla-esr45.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes from
the upstream mozilla-esr45 repository.
2017-03-19 15:55:06 -04:00
Mark H Weaver 512fc6db7b
gnu: libevent@2.0: Add fix from upstream.
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.

* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
2017-03-19 15:54:58 -04:00
Ludovic Courtès 7c86c03109
gnu: guile-commonmark: Default to Guile 2.2.
* gnu/packages/guile.scm (guile-commonmark)[inputs]: Replace GUILE-2.0
with GUILE-2.2.
(guile2.0-commonmark): New variable.
(guile2.2-commonmark): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-COMMONMARK.
2017-03-19 18:14:22 +01:00
Ludovic Courtès bdf1022dec
gnu: guile-reader: Default to Guile 2.2.
* gnu/packages/guile.scm (guile-reader)[inputs]: Change GUILE-2.0 to
GUILE-2.2.
(guile2.0-reader): New variable.
(guile2.2-reader): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-READER instead of
GUILE2.2-READER.
2017-03-19 18:14:22 +01:00
Ludovic Courtès bd19f65a85
gnu: haunt: Default to Guile 2.2.
* gnu/packages/guile.scm (haunt)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
[propagated-inputs]: Replace GUILE-READER and GUILE-COMMONMARK with
their 2.2 variant.
(guile2.0-haunt): New variable.
(guile2.2-haunt): Mark as deprecated.
2017-03-19 18:14:22 +01:00
Ludovic Courtès 8f4acad71b
gnu: Add 'package-for-guile-2.0'.
* gnu/packages/guile.scm (guile-2.2-package-name): Rename to...
(guile-variant-package-name): ... this.  Change to return a lambda.
(package-for-guile-2.2): Adjust accordingly.
(package-for-guile-2.0): New procedure.
2017-03-19 18:14:22 +01:00
Ludovic Courtès f6396d862f
gnu: Rename "guile-next" to "guile".
* gnu/packages/guile.scm (guile-next): Rename to...
(guile-2.2): ... this.  Update users.
[name]: Change to "guile".
[synopsis]: Remove.
[properties]: Remove 'upstream-name', 'ftp-server', and
'ftp-directory'.
* gnu/packages/bioinformatics.scm (rcas-web): Update accordingly.
* gnu/packages/tls.scm (gnutls/guile-2.2): Likewise.
* tests/guix-build.sh: Use 'guile@2.2' instead of 'guile-next'.
* doc/guix.texi (Package Transformation Options): Update examples that
referred to "guile-next".
2017-03-19 18:14:22 +01:00
Manolis Ragkousis 8df672aad5
gnu: Add GNU Mach.
* gnu/packages/hurd.scm (gnumach): New variable.

Co-authored-by: Rene Saavedra <rennes@openmailbox.org>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-19 18:14:22 +01:00
Ricardo Wurmus f729a4d8b2
gnu: niftilib: Simplify build phases.
* gnu/packages/image.scm (niftilib)[arguments]: Use make-flags instead of
replacing "configure" phase; simplify "install" phase.
2017-03-19 14:26:33 +01:00
Efraim Flashner ea50fb8d03
gnu: libepoxy: Add support for aarch64.
* gnu/packages/gl.scm (libepoxy)[arguments]: Add substitution to support
aarch64.
2017-03-19 11:13:08 +02:00
Efraim Flashner 3d3d4014c2
gnu: libepoxy: Update to 1.4.1.
* gnu/packages/gl.scm (libepoxy): Update to 1.4.1.
[home-page]: Use https.
2017-03-19 10:56:40 +02:00
Efraim Flashner eba72e1716
gnu: apl: Update to 1.7.
* gnu/packages/apl.scm (apl): Update to 1.7.
[home-page]: Use https.
2017-03-18 21:28:20 +02:00
Christopher Allan Webber 525acb6e82
gnu: guile-8sync: Update to 0.4.2.
* gnu/packages/guile.scm (guile-8sync): Update to 0.4.2.
2017-03-18 12:22:13 -05:00
Taylan Ulrich Bayırlı/Kammer 57d0bdf8c6
gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH.
* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
  files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
  prevent problems anymore.
2017-03-18 18:26:11 +01:00
Danny Milosavljevic 7601b9f7ce
gnu: wine: Update to 2.4.
* gnu/packages/wine.scm (wine): Update to 2.4.
2017-03-18 17:26:02 +01:00
John Darrington 21122bd79e
gnu: Add niftilib.
* gnu/packages/image.scm (niftilib): New variable.
2017-03-18 15:25:59 +01:00
ng0 d54db52e7f
bug#26152: [PATCH] gnu: limnoria: Update to 20170110.
* gnu/packages/irc.scm (limnoria): Update to 20170110.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-18 11:51:21 +01:00
Danny Milosavljevic 84aac61c81
gnu: rustc: Fix process test.
* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests.  Add another substitution.
2017-03-18 10:37:02 +01:00
John Darrington 6d5f63b690
gnu: Add maxflow.
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
John Darrington a53d6719bc
gnu: Add itpp.
* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
Tobias Geerinckx-Rice b6bd9a79d4
gnu: emacs-slime: Update to 2.19.
* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
2017-03-18 01:49:38 +01:00
Ben Woodcroft 55f7a27cee
gnu: ocaml-qtest: Update to 2.5.
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
2017-03-18 09:52:29 +10:00
Marius Bakke 7c78beb33c
gnu: libbluray: Update to 1.0.0.
* gnu/packages/video.scm (libbluray): Update to 1.0.0.
2017-03-17 20:41:16 +01:00
Marius Bakke 715dd13d8e
gnu: libx264: Update to 20170316-2245.
* gnu/packages/video.scm (libx264): Update to 20170316-2245.
2017-03-17 20:41:15 +01:00
Marius Bakke 2a047d59e0
gnu: libwebp: Update to 0.6.0.
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
Marius Bakke cbef2796ed
gnu: ninja: Update to 1.7.2.
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
Tobias Geerinckx-Rice 039601e097
gnu: btrfs-progs: Use @dfn in description.
* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
2017-03-17 20:39:58 +01:00
Tobias Geerinckx-Rice 0d3ddd490b
gnu: btrfs-progs: Update to 4.10.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
2017-03-17 20:39:58 +01:00
Danny Milosavljevic 893bc3f402
gnu: cargo: Use upstream cargo.
* gnu/packages/rust.scm (cargo): Use upstream cargo.
2017-03-17 16:48:08 +01:00
Danny Milosavljevic b0dcb529af
gnu: rust: Update to 1.15.0.
* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
2017-03-17 16:48:06 +01:00
Kei Kebreau 8f98581613
gnu: libpng-apng: Remove unnecessary call to libtool.
* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
2017-03-17 11:36:27 -04:00
ng0 114a325e8f
gnu: Add libpng-apng.
* gnu/packages/image.scm (libpng-apng): New variable.

Co-authored-by: Kei Kebreau <kei@openmailbox.org>
2017-03-17 11:25:15 -04:00
Ben Woodcroft 0a3063d640
gnu: Add ocaml-mcl.
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
2017-03-17 21:43:27 +10:00
Ben Woodcroft ba1be533ad
gnu: Add ocaml-gsl.
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
Ben Woodcroft 91df9eaefa
gnu: Add ocaml-csv.
* gnu/packages/ocaml.scm (ocaml-csv): New variable.
2017-03-17 21:43:13 +10:00
Ben Woodcroft 0c4dbdc23e
gnu: Add ocaml-sqlite3.
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
2017-03-17 21:19:23 +10:00
Ricardo Wurmus ef71ed8ffa
gnu: snakemake: Update to 3.11.2.
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
2017-03-17 10:14:03 +01:00
Ricardo Wurmus 60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
Fixes <https://bugs.gnu.org/25598>.

* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus 2d7c4ae3ee
gnu: r: Rename to r-minimal.
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
Ricardo Wurmus f1fe5283c9
gnu: Add r-with-recommended-packages.
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages.
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus 6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
Ricardo Wurmus 4b005c7a75
gnu: Add r-spatial.
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus 567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus 248f65269a
gnu: Add r-nlme.
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus 69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus 060c12868b
gnu: r-lattice: Move to other recommended R packages.
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
Ricardo Wurmus e88bad6ddb
gnu: Add r-kernsmooth.
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus 69fddd2d6e
gnu: Add r-foreign.
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus c1999c5910
gnu: Add r-codetools.
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus a27bfb8484
gnu: Add r-cluster.
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus 7489258751
gnu: Add r-class.
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus c7e80a7e0d
gnu: Add r-mass.
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
Ricardo Wurmus 8f0069170c
gnu: Add r-boot.
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
Tobias Geerinckx-Rice 54d556bdd7
gnu: youtube-dl: Update to 2017.03.16.
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
2017-03-17 03:11:35 +01:00
Kei Kebreau 3078821d13
gnu: asciidoc: Use local docbook-xml package.
* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
2017-03-16 21:35:50 -04:00
Tobias Geerinckx-Rice f9cdf1c15b
gnu: Add knot.
* gnu/packages/dns.scm (knot): New variable.
2017-03-17 02:32:01 +01:00
Tobias Geerinckx-Rice 754667f0eb
gnu: Add liburcu.
* gnu/packages/datastructures.scm (liburcu): New variable.
2017-03-17 02:32:00 +01:00
Tobias Geerinckx-Rice 366efcb2fb
gnu: dns: Fix typo and use @dfn in descriptions.
* gnu/packages/dns.scm (bind)[description]: Use @dfn to expand acronyms.
(yadifa)[description]: Likewise, and fix a typo.
2017-03-17 02:32:00 +01:00
Leo Famulari 2ec5ba859f
gnu: linux-libre: Update to 4.10.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.3.
(%linux-libre-hash): Update hash.
2017-03-16 19:40:40 -04:00
Leo Famulari 2044306f05
gnu: linux-libre@4.4: Update to 4.4.54.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.54.
2017-03-16 19:40:39 -04:00
Leo Famulari bcc5b74173
gnu: linux-libre@4.9: Update to 4.9.15.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.15.
2017-03-16 19:40:39 -04:00
Leo Famulari 49ac6dbb0a
gnu: qemu: Fix CVE-2017-{2620,2630}.
* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
2017-03-16 19:40:08 -04:00
Leo Famulari 1e5b8beeff
gnu: virglrenderer: Fix CVE-2017-6386.
* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
2017-03-16 19:39:55 -04:00
Leo Famulari 38c4ca4141
gnu: mesa: Fix typo.
The typo caused the configure phase to fail like this:

"configure: error: classic DRI driver '915' does not exist"

This is a followup to commit c5e91014a2.

* gnu/packages/gl.scm (mesa)[arguments]: Fix typo in #:configure-flags.
2017-03-16 17:51:56 -04:00
Clément Lassieur 2c715a9223
gnu: password-store: Fix compatibility with GnuPG 2.1.19.
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-16 19:58:43 +01:00
Raoul Jean Pierre Bonnal 2441c28414
gnu: Add r-seurat.
* gnu/packages/bioinformatics.scm (r-seurat): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-03-16 14:54:58 +01:00
Ricardo Wurmus 79849358f8
gnu: sra-tools: Update to 2.8.2-1.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
2017-03-16 13:40:36 +01:00
Ricardo Wurmus d5e1716239
gnu: ncbi-vdb: Install configuration files.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase
"install-configuration-files".
2017-03-16 13:39:53 +01:00
Ricardo Wurmus 558e23074e
gnu: ncbi-vdb: Override search path for java-ngs.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl"
to ensure that java-ngs is found by the configure script; remove configure
flag "--with-ngs-java-prefix".
2017-03-16 13:38:39 +01:00
Efraim Flashner 4cacd87e4d
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-16 13:11:28 +02:00
Ricardo Wurmus 701111989e
gnu: ncbi-vdb: Use modify-phases syntax.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases
syntax.
2017-03-16 10:20:56 +01:00
Ricardo Wurmus 5021f54787
gnu: ncbi-vdb: Update to 2.8.2.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
2017-03-16 10:19:25 +01:00
Ricardo Wurmus 6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
2017-03-16 10:18:48 +01:00
Ricardo Wurmus 56f76b08be
gnu: jack-2: Fix build by patching fast_rand.
* gnu/packages/audio.scm (jack-2)[arguments]: Add phase "patch-fast_rand" to
apply upstream fixes.
2017-03-16 09:41:20 +01:00
Leo Famulari 5707ce6e4b
Revert "gnu: bdftopcf: Use libxfont2."
Building with libxfont2 leads to an error in the configure phase:

"No package 'xfont' found"

This reverts commit 2060b4d95f.
2017-03-16 02:06:56 -04:00
Tobias Geerinckx-Rice 0f03c53168
gnu: Add pzstd.
* gnu/packages/compression.scm (pzstd): New variable.
2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice f6ac3101ff
gnu: Add zstd.
* gnu/packages/compression.scm (zstd): New variable.
2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice 9186216268
gnu: python-publicsuffix2: Update to 2.20160818.
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
2017-03-16 05:44:02 +01:00
Tobias Geerinckx-Rice 192b887a03
gnu: awscli: Update to 1.11.63.
* gnu/packages/python.scm (awscli): Update to 1.11.63.
2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice d93985fe22
gnu: python-botocore: Update to 1.5.26.
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
2017-03-16 05:44:01 +01:00
Tobias Geerinckx-Rice 70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1.
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
2017-03-16 05:44:01 +01:00
Kei Kebreau 26a657f06a
gnu: Add prboom-plus.
* gnu/packages/games.scm (prboom-plus): New variable.
2017-03-15 23:14:42 -04:00
Gábor Boskovits 5b5cf3c765
gnu: Add tftp-hpa.
* gnu/packages/networking.scm (tftp-hpa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 18:24:30 -04:00
Andy Wingo 80a725726d
gnu: guile-next: Update to 2.2.0.
* gnu/packages/guile.scm (guile-next): Update to 2.2.0.
2017-03-15 22:59:40 +01:00
Leo Famulari dce8ac54b4
gnu: profanity: Make the source URL version-agnostic.
* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source
URL.
2017-03-15 17:20:27 -04:00
Tobias Geerinckx-Rice cf8d068775
gnu: units: Update to 2.14.
* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
Tobias Geerinckx-Rice 3d602acb13
gnu: no-more-secrets: Update to 0.3.2.
* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2.
2017-03-15 22:19:40 +01:00
Tobias Geerinckx-Rice 7ea523853c
gnu: mailutils: Update to 3.2.
* gnu/packages/mail.scm (mailutils): Update to 3.2.
2017-03-15 22:19:40 +01:00
Tobias Geerinckx-Rice f38607536e
gnu: Use INSTALL-FILE where appropriate.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler
INSTALL-FILE for COPY-FILE when invoked with redundant arguments.
* gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity,
edirect, fasttree, rsem, samtools-0.1): Likewise.
* gnu/packages/code.scm (withershins): Likewise.
* gnu/packages/conky.scm (conky): Likewise.
* gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise.
* gnu/packages/engineering.scm (librecad): Likewise.
2017-03-15 22:19:39 +01:00
Tobias Geerinckx-Rice 618e4bfbad
gnu: cryptsetup: Update to 1.7.4.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4.
2017-03-15 22:19:39 +01:00
Tobias Geerinckx-Rice 4e128dd582
gnu: man-pages: Update to 4.10.
* gnu/packages/man.scm (man-pages): Update to 4.10.
[home-page]: Use HTTPS.
2017-03-15 22:19:38 +01:00
Mekeor Melire a829c6501b
gnu: Add profanity.
* gnu/packages/messaging.scm (profanity): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
Mekeor Melire 781d3b070c
gnu: Add libstrophe.
* gnu/packages/messaging.scm (libstrophe): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
Mekeor Melire 13292ee570
gnu: Add libmesode.
* gnu/packages/messaging.scm (libmesode): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
Leo Famulari 9e61d1534a
gnu: bitcoin-core: Update to 0.14.0.
* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0.
2017-03-15 15:48:43 -04:00
Marius Bakke b8f99f4ae3
gnu: nss, nss-certs: Update to 3.29.3.
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
2017-03-15 17:57:51 +01:00
Marius Bakke d027b0011f
gnu: nss: Increase test timeouts.
* gnu/packages/patches/nss-increase-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (nss)[source]: Use it.
2017-03-15 17:56:05 +01:00
Marius Bakke 1461dd2410
Revert "Revert "gnu: nss: Build for aarch64-linux with 64-bit support.""
This reverts commit adb984d23c.
2017-03-15 17:53:27 +01:00
Marius Bakke db3c06d511
gnu: nss: Use 'modify-phases' syntax.
* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
2017-03-15 17:53:24 +01:00
Marius Bakke 4b7e5c1131
Merge branch 'master' into core-updates 2017-03-15 17:52:26 +01:00
Marius Bakke adb984d23c
Revert "gnu: nss: Build for aarch64-linux with 64-bit support."
Temporary revert to fix messy merge conflict!

This reverts commit 568004c3c9.
2017-03-15 17:51:23 +01:00
Marius Bakke bd102157a1
gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313].
* gnu/packages/databases.scm (mariadb): Update to 10.1.22.
2017-03-15 15:08:31 +01:00
Efraim Flashner 378640ec37
gnu: qemu-minimal: Add aarch64 to target list.
* gnu/packages/qemu.scm (qemu-minimal)[arguments]: Add 'aarch64-softmmu'
to the target list.
2017-03-15 15:58:02 +02:00
Efraim Flashner 27bf00e691
gnu: python-waf: Update to 1.9.8.
* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
2017-03-15 13:08:56 +02:00
Tobias Geerinckx-Rice 283234a309
gnu: direnv: Update to 2.11.3.
* gnu/packages/shellutils.scm (direnv): Update to 2.11.3.
2017-03-15 03:45:57 +01:00
Tobias Geerinckx-Rice 68c10f31f9
gnu: conky: Update to 1.10.6.
* gnu/packages/conky.scm (conky): Update to 1.10.6.
2017-03-15 03:45:56 +01:00
Tobias Geerinckx-Rice 708e76287c
gnu: obs: Update to 18.0.1.
* gnu/packages/video.scm (obs): Update to 18.0.1.
2017-03-15 03:45:56 +01:00
Tobias Geerinckx-Rice 17753e6edb
gnu: youtube-dl: Update to 2017.03.15.
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15.
2017-03-15 03:45:55 +01:00
Tobias Geerinckx-Rice a988cbb766
gnu: stress-make: Fix description.
* gnu/packages/debug.scm (stress-make)[description]: Fix typo.
Avoid ambiguous use of ‘in order’.
2017-03-15 03:45:55 +01:00
Tobias Geerinckx-Rice d540156c69
gnu: znc: Update to 1.6.5.
* gnu/packages/messaging.scm (znc): Update to 1.6.5.
2017-03-15 03:43:21 +01:00
Tobias Geerinckx-Rice 6d57723ac8
gnu: grue-hunter: Correctly install documentation.
* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate
‘/share/doc/grue-hunter’ as a directory, not a plain file.
2017-03-15 01:10:31 +01:00
Tobias Geerinckx-Rice b2d748edff
gnu: samtools: End installation phases with truth.
* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]:
Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE.
2017-03-15 01:10:30 +01:00
Leo Famulari 35dcfed370
gnu: w3m: Update to 0.5.3+git20170102 [security fixes].
See 'NEWS' and 'ChangeLog' in the source distribution for more
information about the security-related bug fixes.

* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102.
2017-03-14 18:26:28 -04:00
Leo Famulari 2eab5db300
Revert "gnu: gitolite: Fix shebangs in hooks."
This change embedded store references in the shebangs of scripts that
were meant to be copied out of the store. Those scripts would break when
the interpreters expected by the shebangs were garbage collected.

<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28>

This reverts commit d0c16adb19.
2017-03-14 18:26:28 -04:00
Marius Bakke 796d2f2d0b
Revert "gnu: nss: Use 'modify-phases' syntax."
This reverts commit 87f1c7efc1.
2017-03-14 22:29:18 +01:00
Marius Bakke 031349075a
Revert "gnu: nss, nss-certs: Update to 3.29.3."
Hydra failed to build this version. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html.

This reverts commit 4f3dcdd99b.
2017-03-14 22:26:18 +01:00
Julien Lepiller edda7ebec1
gnu: Add ocaml-ppx-typerep-conv.
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
2017-03-14 22:09:56 +01:00
Julien Lepiller d2203187fe
gnu: Add ocaml-ppx-let.
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
2017-03-14 22:09:50 +01:00
Julien Lepiller 250ac438e7
gnu: Add ocaml-ppx-enumerate.
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
2017-03-14 22:09:48 +01:00
Julien Lepiller a43160ee6f
gnu: Add ocaml-ppx-assert.
* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
2017-03-14 22:09:46 +01:00
Julien Lepiller 651563bd71
gnu: Add ocaml-ppx-here.
* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
2017-03-14 22:09:44 +01:00
Julien Lepiller 14af90cfbd
gnu: Add ocaml-ppx-variants-conv.
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
2017-03-14 22:09:41 +01:00
Julien Lepiller 334436f051
gnu: Add ocaml-ppx-sexp-conv.
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
2017-03-14 22:09:39 +01:00
Julien Lepiller d1d90df63b
gnu: Add ocaml-variantslib.
* gnu/packages/ocaml.scm (ocaml-variantslib): New variable.
2017-03-14 22:09:37 +01:00
Julien Lepiller ef0051b2c5
gnu: Add ocaml-typerep.
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
2017-03-14 22:09:33 +01:00
Julien Lepiller d19c1b4105
gnu: Add ocaml-sexplib.
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.
2017-03-14 22:09:14 +01:00
Marius Bakke 77c5d63f4d
gnu: libidn2: Create 'pkg-config' file.
* gnu/packages/libidn.scm (libidn2)[arguments]: Add phase creating libidn2.pc.
2017-03-14 21:29:27 +01:00
Kei Kebreau 9099a45792
gnu: asciidoc: Add XML and XSLT support.
* gnu/packages/documentation.scm (asciidoc)[arguments]: Add
set-xml-binary-paths phase.
[inputs]: Add libxml2 and libxslt.
2017-03-14 15:57:54 -04:00
Efraim Flashner 568004c3c9
gnu: nss: Build for aarch64-linux with 64-bit support.
* gnu/packages/gnuzilla.scm (nss)[arguments]: Set the environmental
variable 'USE_64' on aarch64-linux also.
2017-03-14 20:48:39 +02:00
Efraim Flashner 044006f3d2
gnu: mesa: Enable gallium tests.
* gnu/packages/gl.scm (mesa)[arguments]: Add configure flag to enable
the gallium tests.
2017-03-14 20:48:36 +02:00
Efraim Flashner 2a8b89c27f
gnu: mesa: Customize build flags based on architecture.
* gnu/packages/gl.scm (mesa)[arguments]: On armhf-linux and
aarch64-linux remove the i915 gallium driver and add freedreno and vc4.
2017-03-14 20:48:32 +02:00
Efraim Flashner c5e91014a2
gnu: mesa: Use llvm backend for Intel hardware only.
* gnu/packages/gl.scm (mesa)[inputs]: Only use llvm for i686-linux and
x86_64-linux.
[arguments]: Only pass '--enable-gallium-llvm' to 'configure on
i686-linux and x86_64-linux.
2017-03-14 20:48:27 +02:00
Leo Famulari 9b05ccfedd
gnu: linux-libre@4.1: Update to 4.1.39.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.39.
2017-03-14 12:55:20 -04:00
Leo Famulari 962cbb24c5
gnu: windowmaker: Use modify-phases syntax.
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Use modify-phases.
2017-03-14 12:10:16 -04:00
Leo Famulari 8cac5bca12
gnu: windowmaker: Update to 0.95.8.
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.8.
2017-03-14 12:10:12 -04:00
Efraim Flashner d779305db0
gnu: aria2: Update to 1.31.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.31.0.
2017-03-14 15:05:27 +02:00
Ludovic Courtès 28958b646f
gnu: python-parsedatetime: Update to 2.3.
Version 2.1 was apparently time-sensitive and started failing like this:

  ======================================================================
  FAIL: testFloat (tests.TestDelta.test)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 64, in testFloat
      self.cal.parse('1.4 months ago', self.source), months=-1.4)
    File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 37, in assertDelta
      self.assertTrue(diff < 0.05, '%s is not less than 0.05' % diff)
  AssertionError: 0.0666666666667 is not less than 0.05

  ----------------------------------------------------------------------

* gnu/packages/python.scm (python-parsedatetime): Update to 2.3.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
[propagated-inputs]: New field.
2017-03-14 11:18:16 +01:00
ng0 a4651f6411
gnu: Add dovecot-libsodium-plugin.
* gnu/packages/mail.scm (dovecot-libsodium-plugin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
ng0 944a5cdd0d
gnu: Add dovecot-trees.
* gnu/packages/mail.scm (dovecot-trees): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
Leo Famulari 49c2a46e74
gnu: python@2.7: Update to 2.7.13
* gnu/packages/python.scm (python-2.7): Update to 2.7.13.
2017-03-14 02:45:23 -04:00
Leo Famulari dc5cec21f2
gnu: python@2.7: Fix getentropy() calls on kernels < 3.17.
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
2017-03-14 02:45:23 -04:00
Leo Famulari a70782d37b
gnu: wireless-regdb: Update to 2017.03.07.
* gnu/packages/linux.scm (wireless-regdb): Update to 2017.03.07.
2017-03-14 01:58:35 -04:00
Ludovic Courtès 0f11f64022
gnu: guile-cairo: Honor the Guile effective version.
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Add #:modules.
Get the effective version of Guile and use that in installation
directory names.
2017-03-13 22:26:54 +01:00
Ludovic Courtès b97438650d
gnu: guile-cairo: Use 'modify-phases'.
* gnu/packages/gtk.scm (guile-cairo)[arguments]: Use 'modify-phases'.
2017-03-13 22:18:13 +01:00
Efraim Flashner 3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-13 23:08:49 +02:00
Ludovic Courtès 12773de3e7
gnu: Add guile2.2-lib.
* gnu/packages/guile.scm (guile2.2-lib): New variable.
2017-03-13 21:52:38 +01:00
Efraim Flashner 864a9590ad
gnu: luajit: Update to 2.1.0-beta2.
* gnu/packages/lua.scm (luajit): Update to 2.1.0-beta2.
2017-03-13 21:47:30 +02:00
Leo Famulari 7cb68a3cb3
gnu: Remove python-3.4.
* gnu/packages/python.scm (python-3.4): Remove variable.
* gnu/packages/patches/python-3.4-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-13 15:33:54 -04:00
humanitiesNerd a71c863834
gnu: Add python-flask-login.
* gnu/packages/python.scm (python-flask-login, python2-flask-login): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:56 +01:00
humanitiesNerd 78c5566365
gnu: Add python-flask-htmlmin.
* gnu/packages/python.scm (python-flask-htmlmin, python2-flask-htmlmin): New
variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:55 +01:00
humanitiesNerd 35db2d3cb7
gnu: Add python-htmlmin.
* gnu/packages/python.scm (python-htmlmin, python2-htmlmin): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:54 +01:00
Marius Bakke 1bbbb0b4af
gnu: diffoscope: Update to 78.
* gnu/packages/package-management.scm (diffoscope): Update to 78.
2017-03-13 19:16:19 +01:00
Marius Bakke 8298df96ac
gnu: Add minizip.
* gnu/packages/compression.scm (minizip): New variable.
2017-03-13 19:16:19 +01:00
Marius Bakke dd8ecb386c
gnu: notmuch: Update to 0.24.
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.
2017-03-13 18:21:23 +01:00
Marius Bakke 17fb6fb105
gnu: xf86-video-intel: Update to 2.99.917-4-7e9e92c.
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-4-7e9e92c.
2017-03-13 18:21:23 +01:00
Marius Bakke ca453df7c8
gnu: xf86-video-nouveau: Update to 1.0.14.
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.14.
2017-03-13 18:21:22 +01:00
Marius Bakke 4f3dcdd99b
gnu: nss, nss-certs: Update to 3.29.3.
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
2017-03-13 18:21:22 +01:00
Marius Bakke 87f1c7efc1
gnu: nss: Use 'modify-phases' syntax.
* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
2017-03-13 18:21:22 +01:00
Alex Kost 7a4dea524b
gnu: manaplus: Update to 1.7.3.4.
* gnu/packages/games.scm (manaplus): Update to 1.7.3.4.
2017-03-13 18:21:10 +03:00
Alex Kost 846344d053
gnu: git-modes: Update to 1.2.4.
* gnu/packages/emacs.scm (git-modes): Update to 1.2.4.
2017-03-13 18:21:10 +03:00
Alex Kost 2617050b3b
gnu: magit: Update to 2.10.3.
* gnu/packages/emacs.scm (magit): Update to 2.10.3.
2017-03-13 18:21:10 +03:00
Andy Wingo 0216137237
gnu: guile-next: Update to 2.1.8.
* gnu/packages/guile.scm (guile-next): Update to 2.1.8.
2017-03-13 12:22:38 +01:00
pjotrp 3288e647e3
gnu: r-hexbin: Update to 1.27.1-1.
The package tarball was updated in place, resulting in a change in the hash
value.  We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.

* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
2017-03-13 10:34:00 +01:00
Ludovic Courtès 8f7ea70913
gnu: guile-next: Increase max-silent-time.
* gnu/packages/guile.scm (guile-next)[properties]: Add 'max-silent-time'.
2017-03-13 10:30:33 +01:00
Leo Famulari 59bb178cce
gnu: linux-libre@4.4: Update to 4.4.53.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.53.
2017-03-13 00:56:58 -04:00
Leo Famulari 7bc57e760c
gnu: linux-libre@4.9: Update to 4.9.14.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.14.
2017-03-13 00:56:58 -04:00
Leo Famulari 49a8c92cbe
gnu: linux-libre: Update to 4.10.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.2.
(%linux-libre-hash): Update hash.
2017-03-13 00:56:58 -04:00
Andy Patterson 108f69c448
gnu: ecl: Update to 16.1.3.
* gnu/packages/lisp.scm (ecl): Update to 16.1.3.
[arguments]: Use a different method to set the binary used for tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-12 23:47:40 -04:00
Leo Famulari be81133a13
gnu: libical: Fix substitution of path to time zone database.
Fixes <https://bugs.gnu.org/26039>.

This is a followup to commit 2b193389d2.

* gnu/packages/calendar.scm (arguments): Update 'patch-paths' phase.
2017-03-12 20:45:46 -04:00
Leo Famulari 3ffaec136f
gnu: Add a tzdata variant for testing purposes.
* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
2017-03-12 20:45:46 -04:00
Marius Bakke 3f06f43058
gnu: irssi: Update to 1.0.2.
* gnu/packages/irc.scm (irssi): Update to 1.0.2.
2017-03-12 19:58:52 +01:00
Marius Bakke e4d34cd0f0
gnu: python@3.5: Fix getentropy() calls on kernels < 3.17.
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
2017-03-12 18:40:56 +01:00
Marius Bakke 343cee8af3
gnu: python@3.5: Update to 3.5.3.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper): Update to 3.5.3.
* gnu/packages/patches/python-fix-tests.patch: Adjust patch context.
* gnu/packages/patches/python-3.5-fix-tests.patch: Likewise. Patch one new test.
2017-03-12 18:40:56 +01:00
Ludovic Courtès 998ac26a1e
gnu: tintin++: Use a mirror:// URI.
* gnu/packages/games.scm (tintin++)[source]: Use mirror://sourceforge.
2017-03-12 17:47:25 +01:00
Tobias Geerinckx-Rice 301f12ec92
gnu: offlineimap: Update to 7.0.14.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.14.
2017-03-12 15:44:37 +01:00