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653 Commits (5cc1075a76392666d3d733837f5c6252b1e48002)

Author SHA1 Message Date
Ricardo Wurmus a8fa86c477
gnu: Add python-cvxopt. 
* gnu/packages/maths.scm (python-cvxopt, python2-cvxopt): New variables.
 2018-10-11 10:30:30 +02:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Paul Garlick 9e2aa70bad
gnu: petsc-openmpi: Configure with support for MUMPS solver. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags.  Move 'mpi-setup' phase
ahead of 'configure' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-10-04 18:21:17 -04:00
Marius Bakke 6a0427af6c
Merge branch 'master' into core-updates 2018-09-26 01:11:32 +02:00
Kei Kebreau 116af86f14
gnu: octave: Add a search path for CURLOPT_CAPATH. 
* gnu/packages/maths.scm (octave)[native-search-paths]: New field.
 2018-09-24 21:42:12 -04:00
Paul Garlick 45201bf245
gnu: hdf5-parallel-openmpi: Really enable parallel build. 
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set
in the file H5pubconf.h.

* gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add
the "--enable-parallel" flag to the list of configure flags.  Remove
the incompatible "--enable-cxx" flag.  Add 'mpi-setup' phase.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-09-21 17:04:37 +02:00
Paul Garlick b0d1e60fff
gnu: hdf5: Allow for absence of utility script. 
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split'
phase to check for existence of h5fc script.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-21 17:04:37 +02:00
Marius Bakke 2817ac3c18
Merge branch 'master' into core-updates 2018-09-20 13:37:58 +02:00
Tobias Geerinckx-Rice 9923d5a40f
gnu: Use INVOKE & return #t from Ruby package phases. 
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
 2018-09-20 04:17:04 +02:00
Marius Bakke 4d679255da
gnu: glm: Update to 0.9.9.2. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
 2018-09-19 15:20:21 +02:00
Marius Bakke f03c4ec649
gnu: arpack-ng: Update to 3.6.3. 
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
 2018-09-19 15:20:21 +02:00
Marius Bakke 622ef2b90a
gnu: arpack-ng: Don't use unstable tarball. 
* gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
 2018-09-19 15:20:21 +02:00
Eric Brown daa6036fda
gnu: Add openblas-ilp64. 
* gnu/packages/maths.scm (openblas-ilp64): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-09-14 11:23:07 +02:00
Leo Famulari d763940711
Merge branch 'master' into core-updates 2018-09-13 13:32:39 -04:00
Eric Bavier bbe46a4af5
mpi: Factorize openmpi setup build phase. 
* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
 2018-09-11 20:29:04 -05:00
Paul Garlick aa82260bc0
gnu: arpack-ng-openmpi: Fix build. 
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add
'set-test-environment phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 17:46:29 +02:00
Tobias Geerinckx-Rice b38827096f
gnu: mcrl2: Use HTTPS home page. 
* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
 2018-09-10 22:54:36 +02:00
Marius Bakke 02107081da
gnu: double-conversion: Update to 3.1.0. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.0.
 2018-09-10 01:41:29 +02:00
Marius Bakke 2bdc73fb26
gnu: double-conversion: Don't use unstable tarball. 
* gnu/packages/maths.scm (double-conversion)[source]: Use GIT-FETCH.
 2018-09-10 01:41:29 +02:00
Marius Bakke 9adaf1f408
gnu: OpenBLAS: Update to 0.3.3. 
* gnu/packages/maths.scm (openblas): Update to 0.3.3.
 2018-09-09 17:59:35 +02:00
Marius Bakke a617fd55df
gnu: OpenBLAS: Update source URI. 
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable
SourceForge mirror.
 2018-09-09 16:43:11 +02:00
Marius Bakke e9c1492f66
gnu: glm: Update to 0.9.9.1. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
 2018-09-09 16:43:10 +02:00
Eric Bavier 3f5e6ccf9b
slepc: Upgrade to 3.9.2. 
* gnu/packages/maths.scm (slepc): Upgrade to 3.9.2.
 2018-09-05 08:10:38 -05:00
Eric Bavier c15be1280e
petsc: Upgrade to 3.9.3. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.9.3.
[arguments]: Remove unnecessary configure flags.
 2018-09-05 08:10:37 -05:00
Eric Bavier a3a99e27bb
petsc: Move example code to "examples" output. 
* gnu/packages/maths.scm (petsc)[arguments]: New 'move-examples' phase.
 2018-09-05 08:10:37 -05:00
Eric Bavier b26e4f26ff
gnu: Add SUNDIALS. 
* gnu/packages/maths.scm (sundials, sundials-openmpi): New variables.
 2018-09-05 08:10:31 -05:00
Paul Garlick 71ca16b58d
gnu: petsc-openmpi: Configure with support for hdf5 data format. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add
hdf5-parallel-openmpi.
[arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib'
flags.  Add 'set-test-environment' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-04 15:22:48 +02:00
Marius Bakke c702749dfd
gnu: arpack-ng: Update to 3.6.2. 
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.2.
 2018-09-03 19:09:01 +02:00
Marius Bakke 91bb495b85
gnu: arpack-ng: Drop redundant phase. 
* gnu/packages/maths.scm (arpack-ng)[arguments]: Remove.
 2018-09-03 19:09:01 +02:00
Eric Bavier 220458b098
gnu: hypre: Update to 2.14.0. 
* gnu/packages/maths.scm (hypre): Update to 2.14.0
 2018-08-31 10:08:00 -05:00
Tobias Geerinckx-Rice e29bb27d88
gnu: r-pracma: Update to 2.1.5. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
 2018-08-28 22:31:00 +02:00
Marius Bakke a7bc1588e6
Merge branch 'staging' 2018-08-19 15:24:59 +02:00
Kei Kebreau b13ba3f1ba
gnu: gnuplot: Update to 5.2.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
 2018-08-18 21:21:52 -04:00
Kei Kebreau 7fe491fbc8
gnu: cddlib: Update to 0.94i. 
* gnu/packages/maths.scm (cddlib): Update to 0.94i.
 2018-08-18 12:04:54 -04:00
Kei Kebreau b66741edc9
gnu: octave: Update to 4.4.1. 
* gnu/packages/maths.scm (octave): Update to 4.4.1.
(qtoctave)[source]: Remove obsolete patch.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-17 10:47:52 -04:00
Tobias Geerinckx-Rice f133e24481
gnu: armadillo: Update to 9.100.5. 
* gnu/packages/maths.scm (armadillo): Update to 9.100.5.
 2018-08-17 00:38:17 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Tobias Geerinckx-Rice e405c0bcd9
gnu: armadillo: Update to 9.100.4. 
* gnu/packages/maths.scm (armadillo): Update to 9.100.4.
 2018-08-16 02:40:59 +02:00
Kei Kebreau df1bc82b69
gnu: ocaml-gsl: Update to 1.22.0. 
* gnu/packages/maths.scm (ocaml-gsl): Update to 1.22.0.
 2018-08-15 08:11:58 -04:00
Kei Kebreau 9285f8bbae
gnu: coda: Update to 2.19. 
* gnu/packages/maths.scm (coda): Update to 2.19.
 2018-08-13 22:18:09 -04:00
Marius Bakke 869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Marius Bakke f419abea22
gnu: openblas: Update to 0.3.2. 
* gnu/packages/maths.scm (openblas): Update to 0.3.2.
 2018-07-30 15:32:10 +02:00
Efraim Flashner 077d66ed42
gnu: mcrl2: Build with modular qt. 
* gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
 2018-07-29 20:00:30 +03:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke 48d7ac175f
gnu: openlibm: Update to 0.6.0. 
* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
 2018-07-28 18:12:13 +02:00
Marius Bakke 46bda5eb7a
gnu: glm: Update home page. 
* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
 2018-07-28 17:56:59 +02:00
Marius Bakke 5ea4b5943d
gnu: glm: Update to 0.9.9.0. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
 2018-07-28 17:55:04 +02:00
Marius Bakke 57ba8d0673
gnu: double-conversion: Update to 3.0.0. 
* gnu/packages/maths.scm (double-conversion): Update to 3.0.0.
 2018-07-22 18:23:43 +02:00
Marius Bakke b343850ea3
gnu: double-conversion: Update home page. 
* gnu/packages/maths.scm (double-conversion)[home-page]: Update to redirected.
 2018-07-22 18:23:42 +02:00
Kei Kebreau c215fa2135
gnu: octave: Add qhull support. 
* gnu/packages/maths.scm (octave)[inputs]: Add qhull.
 2018-07-17 15:29:05 -04:00
Kei Kebreau d65f0661f3
gnu: Add qhull. 
* gnu/packages/maths.scm (qhull): New variable.
 2018-07-17 12:49:20 -04:00
Marius Bakke 19bb999a50
gnu: openblas: Update to 0.3.1. 
* gnu/packages/patches/openblas-fix-tests-i686.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/maths.scm (openblas): Update to 0.3.1.
[arguments, native-inputs]: Don't apply 'openblas-fix-tests-i686.patch'.
 2018-07-13 12:31:49 +02:00
Marius Bakke 873325b030
Merge branch 'master' into staging 2018-07-08 23:58:22 +02:00
Kei Kebreau 6104f922ee
gnu: units: Update to 2.17. 
* gnu/packages/maths.scm (units): Update to 2.17.
 2018-07-02 21:12:55 -04:00
Marius Bakke 92af3ce417
Merge branch 'master' into staging 2018-07-02 12:18:58 +02:00
Kei Kebreau 7a3772b374
gnu: qtoctave: Fix build for Qt 5.11. 
* gnu/packages/maths.scm (qtoctave)[source]: Add patch.
[native-inputs]: Add texlive.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-06-30 20:05:58 -04:00
Tobias Geerinckx-Rice 0f6dc120ca
gnu: slepc: Return #t from all phases. 
* gnu/packages/maths.scm (slepc)[arguments]: Return #t rather than
undefined from phases.
 2018-06-30 03:46:20 +02:00
Tobias Geerinckx-Rice b414cf523b
gnu: mumps: Use INVOKE. 
* gnu/packages/maths.scm (mumps)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-06-30 03:46:20 +02:00
Tobias Geerinckx-Rice e02a9975b8
gnu: superlu-dist: Return #t from all phases. 
* gnu/packages/maths.scm (superlu-dist)[arguments]: Return #t rather
than undefined from phases. Substitute INVOKE for SYSTEM*.
 2018-06-30 03:46:20 +02:00
Tobias Geerinckx-Rice d67a7e9e8d
gnu: scotch: Return #t from all phases. 
* gnu/packages/maths.scm (scotch)[arguments]: Return #t rather than undefined from phases. Substitute INVOKE for SYSTEM*.
 2018-06-30 03:46:19 +02:00
Tobias Geerinckx-Rice 49fdd357a2
gnu: petsc: Return #t from phases. 
* gnu/packages/maths.scm (petsc)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-06-30 03:46:19 +02:00
Marius Bakke b7a46ed227
gnu: openblas: Fix build on i686. 
* gnu/packages/patches/openblas-fix-tests-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/maths.scm (openblas)[native-inputs]: Add it.
[arguments]: Add phase to apply it on i686 systems only.
 2018-06-20 16:02:04 +02:00
Marius Bakke 6969c4de44
Merge branch 'master' into staging 2018-06-18 15:29:38 +02:00
Marius Bakke 73d18915b5
gnu: OpenBLAS: Update to 0.3.0. 
* gnu/packages/maths.scm (openblas): Update to 0.3.0.
 2018-06-18 15:27:08 +02:00
Ludovic Courtès f3a34b9de8
gnu: gsl: Update to 2.5. 
* gnu/packages/maths.scm (gsl): Update to 2.5.
 2018-06-17 01:40:14 +02:00
Ludovic Courtès b5edc47912
gnu: flann: Fix builds with CMake >= 3.11. 
* gnu/packages/patches/flann-cmake-3.11.patch: New file.
* gnu/packages/maths.scm (flann)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-06-12 15:23:34 +02:00
Theodoros Foradis fc3c88ec9c
gnu: lapack-3.5: Delete package. 
* gnu/packages/maths.scm (lapack-3.5): Delete package.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2018-06-07 23:23:40 +02:00
Mark H Weaver c0d7c1244a
Merge branch 'master' into core-updates 2018-05-29 21:20:47 -04:00
Kei Kebreau de658cc2f8
gnu: octave: Update to 4.4.0. 
* gnu/packages/maths.scm (octave): Update to 4.4.0.
 2018-05-29 18:20:37 -04:00
Mark H Weaver 1640f16e78
Merge branch 'master' into core-updates 2018-05-27 01:26:09 -04:00
Ludovic Courtès 6df2a50ac4
gnu: openmpi: Update to 3.0.1. 
* gnu/packages/mpi.scm (openmpi): Update to 3.0.1.
[arguments]: In 'remove-absolute' phase, adjust romio file name.
* gnu/packages/maths.scm (scalapack)[arguments]: Add
'set-test-environment' phase.
(slepc-openmpi)[arguments]: Likewise.
(mumps-openmpi)[arguments]: Likewise.
(superlu-dist)[arguments]: In 'check' phase, set
'OMPI_MCA_plm_rsh_agent'.
(scotch)[arguments]: In 'build-esmumps', likewise.
(p4est)[arguments]: Add 'set-test-environment' phase.
(hypre-openmpi)[arguments]: Likewise.
 2018-05-25 13:43:03 +02:00
Ludovic Courtès 0921eff2a8
gnu: superlu-dist: Update to 5.3.0. 
* gnu/packages/maths.scm (superlu-dist): Update to 5.3.0.
[source](snippet): Adapt file name and function names to new version.
Remove 'delete-file' call.
 2018-05-25 13:43:03 +02:00
Mark H Weaver 539bf8f2c0
Merge branch 'master' into core-updates 2018-05-17 01:00:50 -04:00
Tobias Geerinckx-Rice 9a2ac95d76
gnu: r-desolve: Update to 1.21. 
* gnu/packages/maths.scm (r-desolve): Update to 1.21.
 2018-05-17 01:01:59 +02:00
Ludovic Courtès e18e7cb9f4
gnu: hypre: Add missing dependency on Perl. 
Previously the test suite would fail to run 'ppmquant', though it would
silently ignore it.

* gnu/packages/maths.scm (hypre)[native-inputs]: Add PERL.
 2018-05-13 13:29:26 +02:00
Ludovic Courtès 4f38754180
gnu: arpack-ng-openmpi: Fix build. 
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Inherit
arguments from ARPACK-NG.  Previously the 'configure' phase would fail
due to the lack of a 'configure' script.
 2018-05-11 18:42:42 +02:00
Marius Bakke 12bd588346
Merge branch 'master' into core-updates 2018-05-06 15:56:24 +02:00
Marius Bakke 560acf2594
gnu: Add python-kiwisolver. 
* gnu/packages/maths.scm (python-kiwisolver, python2-kiwisolver): New public
variables.
 2018-05-05 13:16:32 +02:00
Adam Massmann 07254d8b22
gnu: gnuplot: Update to 5.2.2 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.2.
[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-04 15:27:29 +02:00
Mark H Weaver 3d5ad159b3
Merge branch 'master' into core-updates 2018-04-30 04:03:54 -04:00
Eric Bavier e7323f4c08
gnu: mumps: Update to 5.1.2. 
* gnu/packages/maths.scm (mumps): Update to 5.1.2.
 2018-04-26 20:54:18 -05:00
Eric Bavier d98e9009a9
gnu: scotch: Update to 6.0.5a. 
* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files.
* gnu/packages/patches/scotch-build-parallelism.patch,
gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (scotch): Update to 6.0.5a.
[source](patches): Adjust accordingly.
 2018-04-26 20:54:18 -05:00
Ricardo Wurmus 2bcf5fd337
gnu: r-subplex: Update to 1.5-4. 
* gnu/packages/maths.scm (r-subplex): Update to 1.5-4.
 2018-04-21 23:07:52 +02:00
Mark H Weaver f89aa1521a
Merge branch 'master' into core-updates 2018-04-10 00:42:22 -04:00
Marius Bakke 33d82486d5
gnu: vc: Do not optimize for the build machine CPU. 
* gnu/packages/maths.scm (vc)[arguments]: Add "-DTARGET_ARCHITECTURE=none" to
  #:configure-flags.
 2018-04-08 22:32:24 +02:00
Kei Kebreau 36ce25f092
gnu: Add qtoctave. 
* gnu/packages/maths.scm (qtoctave): New variable.
 2018-03-31 14:05:25 -04:00
Kei Kebreau ab5f3f2131
gnu: octave: Add audio and more sparse matrix support. 
* gnu/packages/maths.scm (octave)[inputs]: Add suitesparse, libsndfile,
portaudio and alsa-lib.
 2018-03-31 14:05:16 -04:00
Marius Bakke 5576cfabf3
Merge branch 'master' into core-updates 2018-03-29 17:34:41 +02:00
Nadya Voronova 910deec66c
gnu: Add tcalc. 
* gnu/packages/maths.scm (tcalc): New variables.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:13:00 +02:00
Tobias Geerinckx-Rice 1dc3109707
gnu: scotch: Use predictable source URI. 
* gnu/packages/maths.scm (scotch)[source]: Use predictable URI.
 2018-03-25 20:01:02 +02:00
Tobias Geerinckx-Rice 7112b2f148
gnu: openlibm: Update to 0.5.5. 
* gnu/packages/maths.scm (openlibm): Update to 0.5.5.
 2018-03-25 20:01:00 +02:00
Tobias Geerinckx-Rice e0bee0de70
gnu: ceres-solver: Update to 1.14.0. 
* gnu/packages/maths.scm (ceres-solver): Update to 1.14.0.
 2018-03-25 00:36:32 +01:00
Mark H Weaver ac21be848a
Merge branch 'master' into core-updates 2018-03-20 14:22:06 -04:00
ng0 4a78fd4617
Correct name and Email for ng0. 
* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2018-03-20 17:17:58 +01:00
Mark H Weaver 647888845c
Merge branch 'master' into core-updates 2018-03-20 00:49:05 -04:00
Ben Woodcroft 63e07468b3
gnu: Add ruby-asciimath. 
* gnu/packages/maths.scm (ruby-asciimath): New variable.
 2018-03-18 10:23:49 +00:00
Mark H Weaver 9f388b1ee1
Merge branch 'master' into core-updates 2018-03-17 01:18:37 -04:00
Mark H Weaver 6cbee49d66
gnu: All snippets report errors using exceptions, else return #t. 
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
gnu/packages/backup.scm, gnu/packages/base.scm,
gnu/packages/bioinformatics.scm, gnu/packages/cdrom.scm,
gnu/packages/chez.scm, gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/cross-base.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm,
gnu/packages/databases.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm,
gnu/packages/emulators.scm, gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm, gnu/packages/fpga.scm,
gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm,
gnu/packages/gcc.scm, gnu/packages/geo.scm, gnu/packages/ghostscript.scm,
gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm, gnu/packages/graphics.scm, gnu/packages/gtk.scm,
gnu/packages/guile.scm, gnu/packages/irc.scm, gnu/packages/java.scm,
gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm,
gnu/packages/lxde.scm, gnu/packages/machine-learning.scm,
gnu/packages/mail.scm, gnu/packages/maths.scm, gnu/packages/messaging.scm,
gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/music.scm,
gnu/packages/netpbm.scm, gnu/packages/networking.scm, gnu/packages/node.scm,
gnu/packages/nvi.scm, gnu/packages/ocaml.scm, gnu/packages/pdf.scm,
gnu/packages/perl.scm, gnu/packages/php.scm, gnu/packages/plotutils.scm,
gnu/packages/pretty-print.scm, gnu/packages/profiling.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/robotics.scm,
gnu/packages/sawfish.scm, gnu/packages/scanner.scm, gnu/packages/scheme.scm,
gnu/packages/scribus.scm, gnu/packages/sdl.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/slang.scm, gnu/packages/smalltalk.scm, gnu/packages/ssh.scm,
gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/tbb.scm,
gnu/packages/terminals.scm, gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm, gnu/packages/textutils.scm,
gnu/packages/tls.scm, gnu/packages/unrtf.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm:
In all snippets, report errors using exceptions, or else return #t.
 2018-03-16 09:08:31 -04:00
Tobias Geerinckx-Rice 47653b3933
gnu: octave: Update to 4.2.2. 
* gnu/packages/maths.scm (octave): Update to 4.2.2.
 2018-03-15 19:11:15 +01:00
Leo Famulari 799ad71bfc
gnu: Add r-desolve. 
* gnu/packages/maths.scm (r-desolve): New variable.
 2018-03-15 10:57:51 -04:00
Leo Famulari 41835f947e
gnu: Add r-subplex. 
gnu/packages/maths.scm (r-subplex): New variable.
 2018-03-15 10:57:51 -04:00
Ludovic Courtès c0edb5b543
gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia. 
Partly fixes <https://bugs.gnu.org/30282>.

* gnu/packages/maths.scm (arpack-ng): Update to 3.5.0.
[native-inputs]: New field.
(arpack-ng-3.3.0): New variable.
* gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
 2018-03-12 16:09:24 +01:00
Ricardo Wurmus d8f46d5234
gnu: hdf5: Do not record the build-time kernel version. 
* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent
the kernel version on the build node from affecting the output.
 2018-03-09 11:20:22 +01:00
Efraim Flashner bd041e7fd3
gnu: dionysus: Update to 1.4.0. 
* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
 2018-02-28 14:42:36 +02:00
Kei Kebreau 0181df537f
gnu: wxmaxima: Update to 18.02.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 18.02.0.
[source]: Add patch.
[build-system]: Use the cmake-build-system.
[native-inputs]: Remove autoconf and automake.
[arguments]: Disable tests, remove 'autoconf' phase.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-02-24 18:05:52 -05:00
Leo Famulari 853b029209
gnu: vc: Update to 1.3.3. 
* gnu/packages/maths.scm (vc): Update to 1.3.3.
 2018-02-23 13:18:32 -05:00
Tobias Geerinckx-Rice a89e0cf581
gnu: lpsolve: Update to 5.5.2.5. 
* gnu/packages/maths.scm (lpsolve): Update to 5.5.2.5.
 2018-02-21 15:02:49 +01:00
Tobias Geerinckx-Rice 6c96b5452c
gnu: lpsolve: Update phase style. 
* gnu/packages/maths.scm (lpsolve)[arguments]: Use INVOKE and
INSTALL-FILE, and end phases with #t.
 2018-02-21 15:02:48 +01:00
Ricardo Wurmus ff9d1a2f0c
Merge branch 'master' into core-updates 2018-02-18 00:39:25 +01:00
Marius Bakke 445929e038
gnu: glpk: Update to 4.65. 
* gnu/packages/maths.scm (glpk): Update to 4.65.
 2018-02-16 22:08:03 +01:00
Mark H Weaver 288b8fd5e9
Merge branch 'master' into core-updates 2018-02-13 13:17:15 -05:00
Ricardo Wurmus 637584253f
gnu: r-pracma: Update to 2.1.4. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
 2018-02-13 16:18:41 +01:00
Ricardo Wurmus 4dba441c2a
gnu: hdf5: Build with -fPIC. 
* gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
 2018-02-12 15:29:43 +01:00
Mark H Weaver efe2a2833c
Merge branch 'master' into core-updates 2018-02-09 01:46:34 -05:00
Tobias Geerinckx-Rice ed0c5d3c58
gnu: mcrl2: Fix typo in synopsis. 
* gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo.
[description]: Use @dfn.
 2018-02-08 14:42:32 +01:00
Jan Nieuwenhuizen 5b05dce747
gnu: Add mcrl2. 
* gnu/packages/maths.scm (mcrl2): New variable.
 2018-02-08 08:50:06 +01:00
Mark H Weaver e7ca634912
Merge branch 'master' into core-updates 2018-02-03 22:46:07 -05:00
Eric Bavier c684008992
gnu: slepc: Apply invoke to configure flags. 
Follow-up to 94a1eb96d3

* gnu/packages/maths.scm (slepc)[arguments]: Use 'apply' since 'flags' is a
list of configure arguments.
 2018-02-02 08:26:59 -06:00
Eric Bavier e01397b489
gnu: Add Elemental. 
* gnu/packages/maths.scm (elemental): New variable.
 2018-02-02 08:26:59 -06:00
Marius Bakke bee7bb315c
Merge branch 'master' into core-updates 2018-02-01 13:18:47 +01:00
Tobias Geerinckx-Rice cc809f1636
gnu: slepc: Update to 3.8.2. 
* gnu/packages/maths.scm (slepc): Update to 3.8.2.
 2018-01-29 00:23:27 +01:00
Tobias Geerinckx-Rice 3c524f2153
gnu: slepc: Update licence. 
SLEPc has been released under a 2-clause BSD licence since version 3.8.

* gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2.
 2018-01-29 00:23:27 +01:00
Tobias Geerinckx-Rice 94a1eb96d3
gnu: fbcat, slepc: Use INVOKE. 
* gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for
SYSTEM*.
* gnu/packages/maths.scm (slepc)[arguments]: Likewise.
 2018-01-29 00:23:27 +01:00
Tobias Geerinckx-Rice 59cd0ba4ab
gnu: openspecfun: Update to 0.5.3. 
* gnu/packages/maths.scm (openspecfun): Update to 0.5.3.
 2018-01-29 00:23:27 +01:00
Leo Famulari a4f393b71f
gnu: opencascade-oce: Fix build with glibc 2.26. 
* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
 2018-01-16 15:24:49 -08:00
Efraim Flashner 23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates 2017-12-31 14:10:25 +02:00
Ricardo Wurmus dc7d6d4ece
gnu: Fix copyright symbol. 
* gnu/packages/maths.scm: Fix copyright line for Dave Love.
 2017-12-24 20:51:48 +01:00
Tobias Geerinckx-Rice e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages. 
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
 2017-12-24 16:12:13 +01:00
Dave Love 493937ae1f
gnu: openblas: Build with LAPACK. 
* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK;
add set-extralib phase.
[inputs]: Add fortran-lib.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-12-23 20:37:40 +01:00
Leo Famulari f76fc96866
Merge branch 'master' into core-updates 2017-12-21 13:58:35 -05:00
Efraim Flashner 677bc34d5b
gnu: Remove redundant cmake libdir configure flags. 
* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove
CMAKE_INSTALL_LIBDIR flag.
* gnu/packages/calendar.scm (libical): Same.
* gnu/packages/engineering.scm (kicad): Same.
* gnu/packages/games.scm (openrct2, mgba): Same.
* gnu/packages/gl.scm (virtualgl): Same.
* gnu/packages/image-processing.scm (mia): Same.
* gnu/packages/linux.scm (rdma-core): Same.
* gnu/packages/machine-learning.scm (dlib): Same.
* gnu/packages/maths.scm (lapack, superlu, z3): Same.
* gnu/packages/password-utils.scm (keepassxc): Same.
* gnu/packages/photo.scm (darktable): Same.
* gnu/packages/rdesktop.scm (freerdp): Same.
 2017-12-19 19:52:01 +02:00
Kei Kebreau a8db968fa4
gnu: wxmaxima: Update to 17.10.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
 2017-12-19 11:26:16 -05:00
Marius Bakke 32cd878be0
Merge branch 'master' into core-updates 2017-12-19 01:42:40 +01:00
Eric Bavier 6ad0c92df5
gnu: ceres-solver: Update to 1.13.0. 
* gnu/packages/maths.scm (ceres-solver): Update to 1.13.0.
 2017-12-15 07:32:43 -06:00
Efraim Flashner dec2ade108
gnu: glpk: Update to 4.64. 
* gnu/packages/maths.scm (glpk): Update to 4.64.
 2017-12-09 23:18:33 +02:00
Marius Bakke 77181815ae
Merge branch 'master' into core-updates 2017-12-05 23:41:30 +01:00
Tobias Geerinckx-Rice 440c4273b8
gnu: coda: Update to 2.18.3. 
* gnu/packages/maths.scm (coda): Update to 2.18.3.
 2017-12-04 04:40:14 +01:00
Ricardo Wurmus 05fd8e6b46
gnu: r-pracma: Update to 2.1.1. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
 2017-11-30 17:28:24 +01:00
Marius Bakke 2dd12924cf
Merge branch 'master' into core-updates 2017-11-19 15:01:00 +01:00
Ludovic Courtès 589e3f4e70
gnu: Move more packages from python to python-web. 
* gnu/packages/python.scm (python-requests, python2-requests)
(python-requests-2.7, python-oauthlib, python2-oauthlib)
(python-furl, python2-furl, python-wsgi-intercept)
(python-publicsuffix, python2-publicsuffix)
(python-publicsuffix2, python2-publicsuffix2): Move to...
* gnu/packages/python-web.scm: ... here.
* gnu/packages/bioinformatics.scm, gnu/packages/finance.scm:
gnu/packages/maths.scm, gnu/packages/terminals.scm,
gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust
accordingly.
 2017-11-16 08:45:15 +01:00
Ricardo Wurmus 5a80c15c14
gnu: Remove "open source" from descriptions. 
All software in Guix is Free Software.

* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
 2017-11-08 16:21:53 +01:00
Marius Bakke b4c22f2546
Merge branch 'master' into core-updates 2017-11-02 22:24:24 +01:00
Eric Bavier a254971350
gnu: units: Add readline input. 
* gnu/packages/maths.scm (units)[inputs]: Add readline.
 2017-11-01 17:17:01 -05:00
Eric Bavier 0498d24866
gnu: units: Add python input. 
* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field.  Add 'wrap-units_cur phase.
 2017-11-01 17:15:10 -05:00
Eric Bavier f11d2849a1
gnu: units: Update to 2.16. 
* gnu/packages/maths.scm (units): Update to 2.16.
 2017-11-01 17:11:15 -05:00
Tobias Geerinckx-Rice b7883b111d
Merge branch 'master' into core-updates 2017-10-25 20:02:08 +02:00
Eric Bavier 24404eaf93
gnu: dealii: Update to 8.5.1. 
Fixes compilation with boost@1.64.0.

* gnu/packages/maths.scm (dealii): Update to 8.5.1.
 2017-10-24 20:16:50 -05:00
Eric Bavier 4150da630f
gnu: p4est: Update to 2.0. 
* gnu/packages/maths.scm (p4est): Update to 2.0.
 2017-10-24 20:16:50 -05:00
Eric Bavier 9ce587f231
gnu: libhilbert: Remove package. 
This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.

* gnu/packages/maths.scm (libhilbert): Remove variable.
 2017-10-24 20:16:49 -05:00
Eric Bavier 958b5a1caa
gnu: slepc: Update to 3.8.0. 
* gnu/packages/maths.scm (slepc): Update to 3.8.0.
 2017-10-24 20:16:49 -05:00
Eric Bavier 6fec298d3e
gnu: petsc: Update to 3.8.0. 
* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
 2017-10-24 20:16:42 -05:00
Thomas Danckaert 8cff2e7aed
Merge 'master' into core-updates 2017-10-16 19:52:30 +02:00
Kei Kebreau b3b2efc82d
gnu: maxima: Update to 5.41.0. 
* gnu/packages/maths.scm (maxima): Update to 5.41.0.
 2017-10-15 10:50:45 -04:00
Theodoros Foradis b509efb385
gnu: Add lapack-3.5. 
* gnu/packages/maths.scm (lapack-3.5): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-11 11:12:33 +02:00
Marius Bakke c01ef97594
Merge branch 'master' into core-updates 2017-10-10 22:33:28 +02:00
Marius Bakke 1c055d7258
Merge branch 'staging' 2017-10-10 21:44:32 +02:00
Thomas Danckaert 2fd26d055a
gnu: Add hdf-java. 
* gnu/packages/maths.scm (hdf-java): New variable.
 2017-10-10 10:22:08 +02:00
Marius Bakke 6a317919cf
Merge branch 'master' into staging 2017-10-06 11:03:27 +02:00
Arun Isaac 5ca4fe9696
gnu: octave: Reference makeinfo with absolute path. 
* gnu/packages/maths.scm (octave)[arguments]: Add configure-makeinfo phase.
[inputs]: Add texinfo.
[native-inputs]: Remove texinfo.
 2017-10-06 03:34:59 +05:30
Marius Bakke 7716ccd59c
Merge branch 'master' into staging 2017-10-05 00:45:38 +02:00
Theodoros Foradis d109b1e85c
Update e-mail for Theodoros Foradis. 
* .mailmap: Add entry.
* gnu/packages/aspell.scm: Replace theodoros.for@openmailbox.org with current address.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/electronics.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/fpga.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/uml.scm: Likewise.
* gnu/packages/wxwidgets.scm: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-10-03 17:07:54 +02:00
Efraim Flashner 64df08f0cf
Merge remote-tracking branch 'origin/master' into core-updates 2017-10-01 22:16:22 +03:00
Kei Kebreau dc1d3cdef7
gnu: Use 'modify-phases' syntax. 
* gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal,
wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use
'modify-phases' syntax.
* gnu/packages/algebra.scm (arb)[arguments]: Likewise.
* gnu/packages/apr.scm (apr-util)[arguments]: Likewise.
* gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano,
lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound,
zita-convolver, zita-alsa-pcmi)[arguments]: Likewise.
* gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express,
flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise.
* gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise.
* gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise.
* gnu/packages/compression.scm (sharutils)[arguments]: Likewise.
* gnu/packages/conky.scm (conky)[arguments]: Likewise.
* gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise.
* gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise.
* gnu/packages/display-managers.scm (slim)[arguments]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise.
* gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise.
* gnu/packages/engineering.scm (pcb)[arguments]: Likewise.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise.
* gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise.
* gnu/packages/fltk.scm (fltk)[arguments]: Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise.
* gnu/packages/gd.scm (perl-gd)[arguments]: Likewise.
* gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise.
* gnu/packages/glib.scm (glibmm)[arguments]: Likewise.
* gnu/packages/gl.scm (glew)[arguments]: Likewise.
* gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs,
libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise.
* gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise.
* gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise.
* gnu/packages/graphics.scm (agg)[arguments]: Likewise.
* gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present,
python2-pycairo)[arguments]: Likewise.
* gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise.
* gnu/packages/hugs.scm (hugs)[arguments]: Likewise.
* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal)
[arguments]: Likewise.
* gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise.
* gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static,
lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools)
[arguments]: Likewise.
* gnu/packages/lisp.scm (ccl)[arguments]: Likewise.
* gnu/packages/lout.scm (lout)[arguments]: Likewise.
* gnu/packages/lua.scm (luajit)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise.
* gnu/packages/mail.scm (exim)[arguments]: Likewise.
* gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise.
* gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun)
[arguments]: Likewise.
* gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise.
* gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise.
* gnu/packages/music.scm (solfege)[arguments]: Likewise.
* gnu/packages/noweb.scm (noweb)[arguments]: Likewise.
* gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]:
Likewise.
* gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu,
zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise.
* gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]:
Likewise.
* gnu/packages/photo.scm (gphoto2)[arguments]: Likewise.
* gnu/packages/popt.scm (popt)[arguments]: Likewise.
* gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]:
Likewise.
* gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise.
* gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy,
python-sqlalchemy, python-docopt)[arguments]: Likewise.
* gnu/packages/rdf.scm (lrdf)[arguments]: Likewise.
* gnu/packages/regex.scm (tre)[arguments]: Likewise.
* gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise.
* gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise.
* gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise.
* gnu/packages/scheme.scm (racket)[arguments]: Likewise.
* gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise.
* gnu/packages/serveez.scm (serveez)[arguments]: Likewise.
* gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise.
* gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise.
* gnu/packages/tcl.scm (expect)[arguments]: Likewise.
* gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise.
* gnu/packages/textutils.scm (recode, libgtextutils)[arguments]:
Likewise.
* gnu/packages/time.scm (time)[arguments]: Likewise.
* gnu/packages/tor.scm (privoxy)[arguments]: Likewise.
* gnu/packages/uucp.scm (uucp)[arguments]: Likewise.
* gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise.
* gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise.
* gnu/packages/web.scm (tinyproxy)[arguments]: Likewise.
* gnu/packages/wicd.scm (wicd)[arguments]: Likewise.
* gnu/packages/wm.scm (bspwm)[arguments]: Likewise.
* gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise.
* gnu/packages/xfce.scm (xfconf)[arguments]: Likewise.
* gnu/packages/xfig.scm (transfig)[arguments]: Likewise.
* gnu/packages/xorg.scm (imake)[arguments]: Likewise.
 2017-09-20 20:58:04 -04:00
Ludovic Courtès 5a7deb1174
gnu: Add BLIS. 
* gnu/packages/maths.scm (make-blis): New procedure.
(blis, ignorance): New variables.
(blis/x86_64): New macro.
(blis-sandybridge, blis-haswell, blis-knl): New variables.
 2017-09-07 15:38:56 +02:00
Paul Garlick c4d4a77923
gnu: pt-scotch32: use keyword arguments from "scotch32" 
*gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword
arguments from "scotch32" package, ensuring that the INTSIZE32 macro is
set

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:24:04 +02:00
Thomas Danckaert 43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references. 
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
  'Configured On' date; truncate reference to compiler store item.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
  truncate hashes of compiler store items.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert fd0378a147
gnu: hdf5: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
  "libhdf5.settings", removing references to the C/C++/Fortran compilers.
 2017-09-01 08:34:31 +02:00
Thomas Danckaert e3a1a1deda
gnu: hdf5: Add output for fortran interface. 
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
  [outputs]: Add "fortran".
  [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
  output to the runpath of the Fortran libs; add a 'split phase to move
  all Fortran-related files to the the Fortran output store location.
 2017-09-01 08:34:24 +02:00
Ricardo Wurmus 5789566aa2
gnu: openblas: Enable tests. 
* gnu/packages/maths.scm (openblas)[arguments]: Enable tests.
 2017-08-31 18:49:49 +02:00
Ricardo Wurmus 1b8de87c98
gnu: openblas: Update to 0.2.20. 
* gnu/packages/maths.scm (openblas): Update to 0.2.20.
 2017-08-31 18:49:27 +02:00
Paul Garlick 1c25a52c4a
gnu: Add pt-scotch32. 
* gnu/packages/maths.scm (pt-scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 12:34:50 +02:00
Paul Garlick 1c39f3b877
gnu: Add "scotch32". 
* gnu/packages/maths.scm (scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 12:34:50 +02:00
Thomas Danckaert e0fbf37350
gnu: coda: Update to 2.18.2. 
* gnu/packages/maths.scm (coda): Update to 2.18.2.
 2017-08-30 09:20:52 +02:00
Kei Kebreau 3c8ba11a97
Update e-mail for Kei Kebreau. 
* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
 2017-08-29 20:13:24 -04:00
Marius Bakke 72e2815d18
Merge branch 'core-updates' 2017-08-26 15:15:49 +02:00
Theodoros Foradis cf684d87d7
gnu: z3: Build Python bindings. 
* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase.  Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags.  Remove #:test-target.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:53 +02:00
Marius Bakke 2718a9cd09
Merge branch 'master' into core-updates 2017-08-21 02:40:37 +02:00
Efraim Flashner 953a12fa9b
gnu: hdf4: Fix building on aarch64. 
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
 2017-08-16 09:33:11 +03:00
Mark H Weaver 09ec5a0f0c
Merge branch 'master' into core-updates 2017-08-15 03:10:14 -04:00
Kei Kebreau ac2ddcc66f
gnu: wxmaxima: Update to 17.05.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1.
[arguments]: Put "autoconf" phase after the "unpack" phase. Fix
indentation.
 2017-08-13 18:18:27 -04:00
Mark H Weaver cc294bcee6
Merge branch 'master' into core-updates 2017-08-09 17:25:31 -04:00
Eric Bavier d84b09e937
gnu: dealii: Update to 8.5.0. 
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version.  Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
 2017-08-09 01:56:53 -05:00
Eric Bavier bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5. 
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase.  Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
 2017-08-09 01:56:53 -05:00
Eric Bavier 2509522c4f
gnu: suitesparse: Use modify-phases. 
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
 2017-08-09 01:56:53 -05:00
Eric Bavier 9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'. 
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
 2017-08-09 01:56:53 -05:00
Eric Bavier baeaf8821d
gnu: slepc: Update to 3.7.4. 
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link.  Remove 'file-name' field.
 2017-08-09 01:56:52 -05:00
Eric Bavier 41a46a5035
gnu: petsc: Update to 3.7.6. 
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
 2017-08-09 01:56:46 -05:00
Mark H Weaver 2d9495da23
Merge branch 'master' into core-updates 2017-08-07 16:45:16 -04:00
Marius Bakke 83fef82b7c
gnu: cubicle: Fix evaluation. 
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
 2017-08-07 12:02:33 +02:00
Mark H Weaver f167595ba1
Merge branch 'master' into core-updates 2017-08-06 00:23:20 -04:00
Julien Lepiller 3d5d87a3ae
gnu: Add cubicle. 
* gnu/packages/maths.scm (cubicle): New variable.
 2017-08-05 10:11:42 +02:00
Ricardo Wurmus 0f2eee0d96
gnu: r-pracma: Update to 2.0.7. 
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
 2017-08-03 17:53:44 +02:00
Efraim Flashner a8ead6f91b
gnu: vc: Limit to x86_64 and i686. 
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
 2017-08-03 13:34:18 +03:00
Thomas Danckaert 0abf526420
gnu: hdf4: Update to 4.12.13. 
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
 2017-08-02 14:08:24 +02:00
Marius Bakke aa9780daf9
Merge branch 'master' into core-updates 2017-08-01 23:42:28 +02:00
Theodoros Foradis 313844d9dc
gnu: Add z3. 
* gnu/packages/maths.scm (z3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-29 23:03:47 +02:00
Marius Bakke e0b9e377f1
Merge branch 'master' into core-updates 2017-07-28 00:34:13 +02:00
Efraim Flashner 1cae188e61
gnu: glpk: Update to 4.63. 
* gnu/packages/maths.scm (glpk): Update to 4.63.
 2017-07-26 10:15:54 +03:00
Kei Kebreau 0093b1262b
gnu: maxima: Ensure binutils are available at runtime. 
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
 2017-07-25 07:58:55 -04:00