0db75f7a79
gnu: fasttree: Use INVOKE.
...
* gnu/packages/bioinformatics.scm (fasttree)[arguments]: Use INVOKE; simplify
install phase.
2018-10-21 23:06:46 +02:00
38622ccd14
gnu: express-beta-diversity: Update to 1.0.8.
...
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
2018-10-21 23:06:46 +02:00
c96ca68f31
gnu: edirect: Update to 10.2.20181018.
...
* gnu/packages/bioinformatics.scm (edirect): Update to 10.2.20181018.
[arguments]: Add simple check phase; simplify other phases.
[inputs]: Add perl-xml-simple.
2018-10-21 23:06:46 +02:00
949fa34b84
gnu: eigensoft: Update to 7.2.1.
...
* gnu/packages/bioinformatics.scm (eigensoft): Update to 7.2.1.
[arguments]: Remove Makefile modification.
2018-10-21 23:06:46 +02:00
5748fe5fcc
gnu: discrover: Fetch from git.
...
* gnu/packages/bioinformatics.scm (discrover)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
4348a059e5
gnu: Add texlive-latex-examplep.
...
* gnu/packages/tex.scm (texlive-latex-examplep): New variable.
2018-10-21 23:06:46 +02:00
f50f343e0d
gnu: Add texlive-latex-verbatimbox.
...
* gnu/packages/tex.scm (texlive-latex-verbatimbox): New variable.
2018-10-21 23:06:46 +02:00
1d0669f4b4
gnu: Add texlive-latex-readarray.
...
* gnu/packages/tex.scm (texlive-latex-readarray): New variable.
2018-10-21 23:06:46 +02:00
893fbf1285
gnu: Add texlive-generic-listofitems.
...
* gnu/packages/tex.scm (texlive-generic-listofitems): New variable.
2018-10-21 23:06:46 +02:00
49b2e86adf
gnu: Add texlive-latex-doi.
...
* gnu/packages/tex.scm (texlive-latex-doi): New variable.
2018-10-21 23:06:46 +02:00
1c06399358
gnu: diamond: Fetch from git.
...
* gnu/packages/bioinformatics.scm (diamond)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
7a1e62ca67
gnu: delly: Update to 0.7.9.
...
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:46 +02:00
4d494a4fa3
gnu: deeptools: Update to 3.1.3.
...
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
2018-10-21 23:06:46 +02:00
e6b65bd219
gnu: eolie: Update to 0.9.45.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.45.
2018-10-21 23:06:46 +02:00
42643fc24d
gnu: python-dendropy: Fetch from git.
...
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
6b31040ae6
gnu: python-py2bit: Update to 0.3.0.
...
* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.0.
2018-10-21 23:06:45 +02:00
6b7260bad1
gnu: cutadapt: Update to 1.18.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.18.
[inputs]: Add python-dnaio.
2018-10-21 23:06:45 +02:00
a5b0038cbd
gnu: Add python-dnaio.
...
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
2018-10-21 23:06:45 +02:00
7321920cd3
gnu: crossmap: Update to 0.2.9.
...
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
8640f9ec91
gnu: python-twobitreader: Update to 3.1.6.
...
* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.6.
[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
f5cec0068a
gnu: Add python-bx-python.
...
* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
2018-10-21 23:06:45 +02:00
2ba2d62c69
gnu: python2-bx-python: Update to 0.8.2.
...
* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
2018-10-21 23:06:45 +02:00
1d18ee6dfd
gnu: bwa-pssm: Fetch from git.
...
* gnu/packages/bioinformatics.scm (bwa-pssm)[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
9a6808e0c0
gnu: tophat: Update to 2.1.1.
...
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
f7618bf18e
gnu: linux-libre: Update to 4.18.16.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.16.
(%linux-libre-hash): Update hash.
2018-10-21 14:59:30 -04:00
668834cae0
gnu: linux-libre@4.14: Update to 4.14.78.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.78.
(%linux-libre-4.14-hash): Update hash.
2018-10-21 14:58:03 -04:00
c4a7a51292
gnu: linux-libre@4.9: Update to 4.9.135.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.135.
2018-10-21 14:57:24 -04:00
9ab6c680ba
gnu: linux-libre@4.4: Update to 4.4.162.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.162.
2018-10-21 14:56:44 -04:00
673364cd3a
gnu: Add emacs-slime-repl-ansi-color.
...
* gnu/packages/emacs.scm (emacs-slime-repl-ansi-color): New variable.
2018-10-21 19:49:10 +02:00
3a69b59332
gnu: rng-tools: Update to 6.6.
...
* gnu/packages/linux.scm (rng-tools): Update to 6.6.
2018-10-21 17:57:01 +02:00
9b6dc31b6d
gnu: fluidsynth: Update to 2.0.1.
...
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.1.
(fluidsynth-1): New public variable.
* gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1.
* gnu/packages/music.scm (lmms)[inputs]: Likewise.
2018-10-21 17:57:01 +02:00
b6b3e5120a
gnu: libgxps: Update to 0.3.0.
...
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-10-21 17:57:01 +02:00
c8d62d936e
gnu: libgxps: Propagate required inputs.
...
* gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ...
[propagated-inputs]: ... here. New field.
2018-10-21 17:57:01 +02:00
920de4286a
gnu: re2: Update to 2018-10-01.
...
* gnu/packages/regex.scm (re2): Update to 2018-10-01.
2018-10-21 17:57:01 +02:00
ab5e4be647
gnu: libgphoto2: Update to 2.5.19.
...
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
2018-10-21 17:57:01 +02:00
8941b4ab3d
gnu: appstream-glib: Update to 0.7.14.
...
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
2018-10-21 17:57:00 +02:00
8eadc55202
gnu: openal: Update to 1.19.1.
...
* gnu/packages/audio.scm (openal): Update to 1.19.1.
2018-10-21 17:57:00 +02:00
2c17bd7b29
gnu: kodi: Disable version checker.
...
Fixes bug#32997.
* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove
the version checking configuration option.
2018-10-21 16:39:26 +03:00
617c478506
gnu: python2-dendropy: Disable failing test.
...
* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable
failing test.
2018-10-21 22:31:56 +10:00
21c837405a
gnu: bowtie: Update to 2.3.4.3.
...
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.4.3.
[source]: Fetch from git.
[inputs]: Replace python-2 with python-wrapper; move perl, perl-clone,
perl-test-deep, and perl-test-simple from here...
[native-inputs]: ...to here.
[arguments]: Simplify check phase.
2018-10-20 23:37:34 +02:00
f45093429c
gnu: blast+: Use INVOKE and return #T unconditionally.
...
* gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and
return #T unconditionally.
2018-10-20 23:37:34 +02:00
f8b697a385
gnu: bedops: Update to 2.4.35.
...
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35.
[source]: Fetch from git.
2018-10-20 23:37:34 +02:00
337d72fb44
gnu: bedops: Use INVOKE.
...
* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
2018-10-20 23:37:34 +02:00
c793f4d8fb
gnu: bamm: Fetch from git and use INVOKE.
...
* gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git.
[arguments]: Use INVOKE and return #T unconditionally.
2018-10-20 23:37:34 +02:00
95758e2faf
gnu: aragorn: Use invoke and simplify.
...
* gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build
phase; simplify install phase.
2018-10-20 23:37:33 +02:00
8b4102b903
gnu: clipper: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Add fix-typo phase.
2018-10-20 23:37:33 +02:00
895cf8278a
gnu: python-pybedtools: Update to 0.7.10.
...
* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10.
[arguments]: Disable broken tests.
[propagated-inputs]: Replace bedtools with bedtools-2.26; add
python-matplotlib, python-pysam, and python-pyyaml.
[native-inputs]: Remove python-pyyaml; add kentutils, python-numpy,
python-pandas, and python-six.
(python-pybedtools): New variable.
2018-10-20 23:37:33 +02:00
129363b762
gnu: Add bedtools-2.26.
...
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
2018-10-20 23:37:28 +02:00
bfa47f14b1
gnu: cataclysm-dda: Update snapshot.
...
* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
2018-10-20 14:38:45 -04:00
82cbe4e046
gnu: maxima: Update to 5.42.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
2018-10-20 14:38:45 -04:00
227da3a4c5
gnu: python-glances: Update to 3.0.2.
...
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
2018-10-20 18:24:23 +03:00
67fd64a490
gnu: emacs-hy-mode: Update to 1.0.3.
...
* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
2018-10-20 17:48:58 +03:00
e661dca879
gnu: emacs-erc-hl-nicks: Update to 1.3.3.
...
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
2018-10-20 17:48:49 +03:00
91c5e6a69d
gnu: emacs-yasnippet: Update to 0.13.0.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
2018-10-20 17:48:36 +03:00
292d637b9e
gnu: emacs-nginx-mode: Update to 1.1.9.
...
* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
2018-10-20 17:48:28 +03:00
2f1dacc281
gnu: emacs-rainbow-mode: Update to 1.0.1.
...
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
2018-10-20 17:48:07 +03:00
45dcdf5349
gnu: emacs-smart-mode-line: Update to 2.12.0.
...
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
2018-10-20 17:47:46 +03:00
9137596179
gnu: emacs-fill-column-indicator: Update to 1.89.
...
* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
2018-10-20 17:47:13 +03:00
83246854f3
gnu: emacs-ggtags: Update to 0.8.13.
...
* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
2018-10-20 17:46:43 +03:00
42f9ebdc77
gnu: emacs-which-key: Update to 3.3.0.
...
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
2018-10-20 17:37:32 +03:00
0d3f170864
gnu: Add soundconverter.
...
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-20 12:24:50 +01:00
b5a927b3ba
gnu: Add enchive.
...
* gnu/packages/crypto.scm (enchive): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:41 +02:00
bc83b2e22f
gnu: Add i3blocks.
...
* gnu/packages/wm.scm (i3blocks): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:37 +02:00
cdb84eb0e6
gnu: qsynth: Update to 0.5.3.
...
* gnu/packages/audio.scm (qsynth): Update to 0.5.3.
2018-10-19 21:59:28 +02:00
0ee6692a63
gnu: sbcl-slime-swank: Remove reference to unbound variable.
...
Fixes a regression introduced in commit
c4d4ae1e16
2018-10-19 18:34:07 +02:00
b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0.
...
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
4680fef705
gnu: Add wiredtiger 3.1.0
...
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
wiredtiger
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
3bd45f5c80
gnu: emacs-slime: License is a mix of GPL2+ and public domain.
...
* gnu/packages/emacs.scm (emacs-slime)[license]: Update to (gpl2+ public-domain)
2018-10-19 18:00:14 +02:00
e2e5004f6e
gnu: Add lparallel.
...
* gnu/packages/lisp.scm (cl-lparallel, ecl-lparallel, sbcl-lparallel): New variables.
2018-10-19 17:56:38 +02:00
24fd7586a4
gnu: Add sbcl-cl-webkit.
...
* gnu/packages/lisp.scm (sbcl-cl-webkit): New variable.
2018-10-19 17:56:38 +02:00
c80dfee9f1
gnu: Add sbcl-cl-cffi-gtk.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19 17:56:38 +02:00
7b5b8c4405
gnu: Add sbcl-cl-cffi-gtk-gdk.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk): New variable.
2018-10-19 17:56:37 +02:00
a3bdddc359
gnu: Add sbcl-cl-cffi-gtk-gdk-pixbuf.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk-pixbuf): New variable.
2018-10-19 17:56:37 +02:00
9ecc457b52
gnu: Add sbcl-cl-cffi-gtk-pango.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-pango): New variable.
2018-10-19 17:56:37 +02:00
7176fe7c32
gnu: Add sbcl-cl-cffi-gtk-cairo.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-cairo): New variable.
2018-10-19 17:56:37 +02:00
867b3f4780
gnu: Add sbcl-cl-cffi-gtk-gio.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gio): New variable.
2018-10-19 17:56:37 +02:00
77a5461c31
gnu: Add sbcl-cl-cffi-gtk-gobject.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gobject): New variable.
2018-10-19 17:56:37 +02:00
64dcf7d99b
gnu: Add sbcl-cl-cffi-gtk-glib.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-glib): New variable.
2018-10-19 17:56:37 +02:00
c88985d9b0
gnu: Add sbcl-cl-cffi-gtk.
...
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19 17:56:37 +02:00
85be9191ee
gnu: Add closer-mop.
...
* gnu/packages/lisp.scm (cl-closer-mop, ecl-closer-mop, sbcl-closer-mop): New variables.
2018-10-19 17:56:37 +02:00
4aa2342008
gnu: Add trivial-garbage.
...
* gnu/packages/lisp.scm (cl-trivial-garbage, ecl-trivial-garbage, sbcl-trivial-garbage): New variables.
2018-10-19 17:56:37 +02:00
2cc931db44
gnu: Add cl-unix-opts.
...
* gnu/packages/lisp.scm (cl-unix-opts, ecl-unix-opts, sbcl-unix-opts): New variables.
2018-10-19 17:56:37 +02:00
dedbf37e5d
gnu: Add cl-json.
...
* gnu/packages/lisp.scm (cl-json, ecl-cl-json, sbcl-cl-json): New variables.
2018-10-19 17:56:37 +02:00
4624d2e2b4
gnu: Add parenscript.
...
* gnu/packages/lisp.scm (cl-parenscript, ecl-parenscript, sbcl-parenscript): New variables.
2018-10-19 17:56:36 +02:00
8f065b47c7
gnu: Add sbcl-cl-sqlite.
...
* gnu/packages/lisp.scm (sbcl-cl-sqlite): New variable.
2018-10-19 17:56:36 +02:00
4112307268
gnu: Add sbcl-cffi.
...
* gnu/packages/lisp.scm (sbcl-cffi): New variable.
2018-10-19 17:56:36 +02:00
d3142f2ffb
gnu: Add sbcl-cffi-grovel.
...
* gnu/packages/lisp.scm (sbcl-cffi-grovel): New variable.
2018-10-19 17:56:36 +02:00
9eea4e0302
gnu: Add sbcl-cffi-libffi.
...
* gnu/packages/lisp.scm (sbcl-cffi-libffi): New variable.
2018-10-19 17:56:36 +02:00
99b3d203fb
gnu: Add sbcl-cffi-toolchain.
...
* gnu/packages/lisp.scm (sbcl-cffi-toolchain): New variable.
2018-10-19 17:56:35 +02:00
5d9bf76235
gnu: Add sbcl-cffi-bootstrap.
...
* gnu/packages/lisp.scm (sbcl-cffi-bootstrap): New variable.
2018-10-19 17:56:06 +02:00
92b1d09b68
gnu: Add queues.priority-cqueue.
...
* gnu/packages/lisp.scm (cl-queues.priority-cqueue, ecl-queues.priority-cqueue, sbcl-queues.priority-cqueue): New variables.
2018-10-19 17:54:13 +02:00
144085cd69
gnu: Add queues.priority-queue.
...
* gnu/packages/lisp.scm (cl-queues.priority-queue, ecl-queues.priority-queue, sbcl-queues.priority-queue): New variables.
2018-10-19 17:54:13 +02:00
a889ba99c1
gnu: Add queues.simple-cqueue.
...
* gnu/packages/lisp.scm (cl-queues.simple-cqueue, ecl-queues.simple-cqueue, sbcl-queues.simple-cqueue): New variables.
2018-10-19 17:54:13 +02:00
6fef7c0ec8
gnu: Add queues.simple-queue.
...
* gnu/packages/lisp.scm (cl-queues.simple-queue, ecl-queues.simple-queue, sbcl-queues.simple-queue): New variables.
2018-10-19 17:54:13 +02:00
eb766dfed0
gnu: Add queues.
...
* gnu/packages/lisp.scm (cl-queues, ecl-queues, sbcl-queues): New variables.
2018-10-19 17:54:13 +02:00
3f4c21c53e
gnu: Add puri.
...
* gnu/packages/lisp.scm (cl-puri, ecl-puri, sbcl-puri): New variables.
2018-10-19 17:54:13 +02:00
1de50cb73e
gnu: Add ptester.
...
* gnu/packages/lisp.scm (cl-ptester, ecl-ptester, sbcl-ptester): New variables.
2018-10-19 17:54:13 +02:00
a28d00d999
gnu: Add simple-scanf.
...
* gnu/packages/lisp.scm (cl-simple-scanf, ecl-simple-scanf, sbcl-simple-scanf): New variables.
2018-10-19 17:54:13 +02:00
28b52970ba
gnu: Add parse-float.
...
* gnu/packages/lisp.scm (cl-parse-float, ecl-parse-float, sbcl-parse-float): New variables.
2018-10-19 17:54:13 +02:00
41b3b866ce
gnu: Add proc-parse.
...
* gnu/packages/lisp.scm (cl-proc-parse, ecl-proc-parse, sbcl-proc-parse): New variables.
2018-10-19 17:54:12 +02:00
86afb0a272
gnu: Add prove.
...
* gnu/packages/lisp.scm (cl-prove, ecl-prove, sbcl-prove): New variables.
2018-10-19 17:54:12 +02:00
1a42bb80cb
gnu: Add prove-asdf.
...
* gnu/packages/lisp.scm (cl-prove-asdf, ecl-prove-asdf, sbcl-prove-asdf): New variables.
2018-10-19 17:54:12 +02:00
68a7b929f3
gnu: Add cl-ansi-text.
...
* gnu/packages/lisp.scm (cl-ansi-text, ecl-cl-ansi-text, sbcl-cl-ansi-text): New variables.
2018-10-19 17:54:12 +02:00
8caa928dd4
gnu: Add cl-colors.
...
* gnu/packages/lisp.scm (cl-colors, ecl-cl-colors, sbcl-cl-colors): New variables.
2018-10-19 17:54:12 +02:00
d414223205
gnu: Add let-plus.
...
* gnu/packages/lisp.scm (cl-let-plus, ecl-let-plus, sbcl-let-plus): New variables.
2018-10-19 17:54:12 +02:00
5b8a801d16
gnu: Add lift.
...
* gnu/packages/lisp.scm (cl-lift, ecl-lift, sbcl-lift): New variables.
2018-10-19 17:54:12 +02:00
9f3000cc11
gnu: Add anaphora.
...
* gnu/packages/lisp.scm (cl-anaphora, ecl-anaphora, sbcl-anaphora): New variables.
2018-10-19 17:54:12 +02:00
19a1c3be97
gnu: Add lisp-unit.
...
* gnu/packages/lisp.scm (cl-lisp-unit, ecl-lisp-unit, sbcl-lisp-unit): New variables.
2018-10-19 17:54:12 +02:00
c4d4ae1e16
gnu: Add sbcl-slime-swank.
...
* gnu/packages/lisp.scm (sbcl-slime-swank): New variable.
2018-10-19 17:54:12 +02:00
109ce303f4
gnu: Add cl-string-match.
...
* gnu/packages/lisp.scm (cl-string-match, ecl-cl-string-match, sbcl-cl-string-match): New variables.
2018-10-19 17:54:11 +02:00
a927eb3653
gnu: Add ascii-strings.
...
* gnu/packages/lisp.scm (cl-ascii-strings, ecl-ascii-strings, sbcl-ascii-strings): New variables.
2018-10-19 17:54:11 +02:00
8d8d1c8d6c
gnu: Add mgl-pax.
...
* gnu/packages/lisp.scm (cl-mgl-pax, ecl-mgl-pax, sbcl-mgl-pax): New variables.
2018-10-19 17:54:11 +02:00
f07efbf1e6
gnu: Add pythonic-string-reader.
...
* gnu/packages/lisp.scm (cl-pythonic-string-reader, ecl-pythonic-string-reader, sbcl-pythonic-string-reader): New variables.
2018-10-19 17:54:11 +02:00
fb8c4bc6ba
gnu: Add named-readtables.
...
* gnu/packages/lisp.scm (cl-named-readtables, ecl-named-readtables, sbcl-named-readtables): New variables.
FIX named-readtables
2018-10-19 17:54:11 +02:00
e549ba0598
gnu: Add ironclad.
...
* gnu/packages/lisp.scm (cl-ironclad, ecl-ironclad, sbcl-ironclad): New variables.
2018-10-19 17:54:11 +02:00
fbdd9b2c8b
gnu: Add nibbles.
...
* gnu/packages/lisp.scm (cl-nibbles, ecl-nibbles, sbcl-nibbles): New variables.
2018-10-19 17:54:11 +02:00
5800c538a1
gnu: Add rt.
...
* gnu/packages/lisp.scm (cl-rt, ecl-rt, sbcl-rt): New variables.
2018-10-19 17:54:11 +02:00
1855496813
gnu: Add cl-fad.
...
* gnu/packages/lisp.scm (cl-fad, ecl-cl-fad, sbcl-cl-fad): New variables.
2018-10-19 17:54:11 +02:00
1a3d39c446
gnu: Add 3bmd-ext-code-blocks.
...
* gnu/packages/lisp.scm (cl-3bmd-ext-code-blocks, ecl-3bmd-ext-code-blocks, sbcl-3bmd-ext-code-blocks): New variables.
2018-10-19 17:54:11 +02:00
ef0c3e1429
gnu: Add 3bmd.
...
* gnu/packages/lisp.scm (cl-3bmd, ecl-3bmd, sbcl-3bmd): New variables.
2018-10-19 17:54:10 +02:00
b4ba1c0a38
gnu: Add colorize.
...
* gnu/packages/lisp.scm (cl-colorize, ecl-colorize, sbcl-colorize): New variables.
2018-10-19 17:54:10 +02:00
6a1761cbf6
gnu: Add html-encode.
...
* gnu/packages/lisp.scm (cl-html-encode, ecl-html-encode, sbcl-html-encode): New variables.
2018-10-19 17:54:10 +02:00
141001597d
gnu: Add split-sequence.
...
* gnu/packages/lisp.scm (cl-split-sequence, ecl-split-sequence, sbcl-split-sequence): New variables.
2018-10-19 17:54:10 +02:00
bdf83297a8
gnu: Add esrap.
...
* gnu/packages/lisp.scm (cl-esrap, ecl-esrap, sbcl-esrap): New variables.
2018-10-19 17:54:10 +02:00
989cd79b5c
gnu: Add eos.
...
* gnu/packages/lisp.scm (cl-eos, ecl-eos, sbcl-eos): New variables.
2018-10-19 17:54:10 +02:00
8f41fa066e
gnu: Add jpl-queues.
...
* gnu/packages/lisp.scm (cl-jpl-queues, ecl-jpl-queues, sbcl-jpl-queues): New variables.
2018-10-19 17:54:10 +02:00
232e1abce7
gnu: Add jpl-util.
...
* gnu/packages/lisp.scm (cl-jpl-util, ecl-jpl-util, sbcl-jpl-util): New variables.
2018-10-19 17:54:10 +02:00
ef091e9155
gnu: Add cl-yacc.
...
* gnu/packages/lisp.scm (cl-cl-yacc, ecl-cl-yacc, sbcl-cl-yacc): New variables.
2018-10-19 17:54:10 +02:00
2d418bfa39
gnu: Add babel.
...
* gnu/packages/lisp.scm (cl-babel, ecl-babel, sbcl-babel): New variables.
2018-10-19 17:54:09 +02:00
4ef9ddbdae
gnu: Add hu.dwim.stefil.
...
* gnu/packages/lisp.scm (cl-hu.dwim.stefil, ecl-hu.dwim.stefil, sbcl-hu.dwim.stefil): New variables.
2018-10-19 17:54:09 +02:00
0cd6fb4970
gnu: Add hu.dwim.asdf.
...
* gnu/packages/lisp.scm (cl-hu.dwim.asdf, ecl-hu.dwim.asdf, sbcl-hu.dwim.asdf): New variables.
2018-10-19 17:54:09 +02:00
8c661ff1ef
gnu: Add trivial-features.
...
* gnu/packages/lisp.scm (cl-trivial-features, ecl-trivial-features, sbcl-trivial-features): New variables.
2018-10-19 17:54:09 +02:00
99c6124229
gnu: Add cl-strings.
...
* gnu/packages/lisp.scm (cl-strings, sbcl-cl-strings, ecl-cl-strings): New variables.
2018-10-19 17:25:40 +02:00
e7b2937d19
gnu: Add texlive-latex-koma-script.
...
* gnu/packages/tex.scm (texlive-latex-koma-script): New variable.
2018-10-19 15:17:55 +02:00
17ef5f1ff9
gnu: Add texlive-latex-pgf.
...
* gnu/packages/tex.scm (texlive-latex-pgf): New variable.
2018-10-19 15:16:40 +02:00
910d67fb95
gnu: Add texlive-generic-ulem.
...
* gnu/packages/tex.scm (texlive-generic-ulem): New variable.
2018-10-19 15:11:52 +02:00
0e73c11bb2
gnu: Add texlive-latex-eukdate.
...
* gnu/packages/tex.scm (texlive-latex-eukdate): New variable.
2018-10-19 15:10:18 +02:00
707babdde4
gnu: Add texlive-latex-needspace.
...
* gnu/packages/tex.scm (texlive-latex-needspace): New variable.
2018-10-19 15:10:02 +02:00
b718793e2a
gnu: Add texlive-latex-ms.
...
* gnu/packages/tex.scm (texlive-latex-ms): New variable.
2018-10-19 15:08:45 +02:00
0fd874ebd1
gnu: youtube-dl: Update to 2018.10.05.
...
* gnu/packages/video.scm (youtube-dl): Update to 2018.10.05.
2018-10-19 11:43:35 +02:00
7d1f21c69a
gnu: vulkan-headers: Update to 1.1.85.0.
...
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.85.0.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
2018-10-19 08:43:29 +02:00
eed00f93e8
gnu: libssh: Update to 0.7.6 [fixes CVE-2018-10933].
...
* gnu/packages/ssh.scm (libssh): Update to 0.7.6.
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Adjust patch.
2018-10-18 23:08:45 -04:00
75b2afd953
gnu: linux-libre: Update to 4.18.15.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.15.
(%linux-libre-hash): Update hash.
2018-10-18 22:53:00 -04:00
ef8e7e3298
gnu: linux-libre@4.14: Update to 4.14.77.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.77.
(%linux-libre-4.14-hash): Update hash.
2018-10-18 22:52:58 -04:00
1e672a01be
gnu: linux-libre@4.9: Update to 4.9.134.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.134.
2018-10-18 22:52:56 -04:00
29f40ee547
gnu: libgit2: Update to 0.26.7.
...
* gnu/packages/version-control.scm (libgit2): Update to 0.26.7.
2018-10-19 03:18:57 +02:00
2c0a3ed1f9
gnu: tmux: Update to 2.8.
...
* gnu/packages/tmux.scm (tmux): Update to 2.8.
2018-10-19 03:18:57 +02:00
a908ffd1ab
gnu: notmuch: Update to 0.28.
...
* gnu/packages/mail.scm (notmuch): Update to 0.28.
2018-10-19 03:18:57 +02:00
402e60859d
gnu: linux-libre: Enable SHPC PCI Hotplug driver on ARM64.
...
Fixes <https://bugs.gnu.org/32840 > on ARM64.
* gnu/packages/aux-files/linux-libre/4.18-arm64.conf: Add
CONFIG_HOTPLUG_PCI_SHPC=y.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 00:11:42 +02:00
d36cd88873
gnu: grub-efi: Fix an uninitialized variable issue.
...
* gnu/packages/patches/grub-check-error-efibootmgr.patch: Add hunk to
correct uninitialized variable.
2018-10-19 00:11:42 +02:00
33428d1267
gnu: javacc: Bootstrap from javacc-4 instead of bootstrap binary.
...
* gnu/packages/java.scm (javacc)[source](snippet): Delete bootstrap binary.
[arguments]: Set 'bootstrap-jar' path.
[native-inputs]: Add 'javacc-4'.
2018-10-18 14:59:55 +02:00
6662d65f96
gnu: javacc: Use snippet to delete bundled jars.
...
* gnu/packages/java.scm (javacc-4)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase and add 'delete-tests'
phase.
* gnu/packages/java.scm (javacc)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase.
2018-10-18 14:59:52 +02:00
53fb0476ec
gnu: javacc: 'javacc' now inherits from 'javacc-4'.
...
* gnu/packages/java.scm (javacc, javacc-4): 'javacc' now inherits from
'javacc-4' instead of the opposite around.
2018-10-18 14:59:44 +02:00
b286e3b368
gnu: retux: Update to 1.3.6.
...
* gnu/packages/games.scm (retux): Update to 1.3.6.
2018-10-17 17:04:27 -04:00
0592db2873
gnu: wesnoth: Update to 1.14.5.
...
* gnu/packages/games.scm (wesnoth): Update to 1.14.5.
2018-10-17 16:27:38 -04:00
a55ebe2e3a
gnu: python2: Add upstream security fixes.
...
This addresses CVE-2018-{1060,1061,14647,1000802}.
* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
2018-10-17 20:34:37 +02:00
90aeaee861
gnu: python: Fix CVE-2018-14647.
...
* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
2018-10-17 20:34:37 +02:00
1d43756107
gnu: strace: Check before enabling personalities.
...
* gnu/packages/linux.scm (strace)[arguments]: Add configure flag to
check for personality support.
2018-10-17 21:28:05 +03:00
82402f76be
gnu: hyperrogue: Update to 10.4t.
...
* gnu/packages/games.scm (hyperrogue): Update to 10.4t.
[arguments]: Modify 'make-flags'. Modify 'configure' and 'install' phases.
2018-10-17 13:47:41 -04:00
05f8943f04
gnu: emacs-helm-system-packages: Add recutils to inputs.
...
* gnu/packages/emacs.scm (emacs-helm-system-packages)[inputs]: Use recutils.
2018-10-17 10:37:35 +02:00
15b283e712
gnu: streamlink: Update to 0.14.2.
...
* gnu/packages/video.scm (streamlink): Update to 0.14.2.
[source]: Download from pypi.
2018-10-17 11:24:18 +03:00
24220e0f09
gnu: emacs-nodejs-repl: Update to 0.2.0.
...
* gnu/packages/emacs.scm (emacs-nodejs-repl): Update to 0.2.0.
2018-10-16 23:02:50 -04:00
6f1ce09d79
gnu: Add guix-minimal.
...
* gnu/packages/guile.scm (guile-2.0.13): New variable.
* gnu/packages/package-management.scm (guix)[arguments]: Adjust 'wrap-program'
phase to handle "missing" inputs.
(guix-minimal): New variable.
2018-10-16 17:09:15 -05:00
c8e3651a82
gnu: guile2.0-guix: Fix build.
...
* gnu/packages/gnupg.scm (guile2.0-gcrypt): New variable.
* gnu/packages/guile.scm (guile2.0-sqlite3): New variable.
* gnu/packages/package-management.scm (guile2.0-guix)[propagated-inputs]: Use
them.
2018-10-16 17:09:15 -05:00
02d5ed4a27
gnu: GStreamer plugins: Update MP3 features for GStreamer 1.14.
...
GStreamer moved all MPEG-1 audio (mp1, mp2, and mp3) decoders and encoders to
the group of "good" plugins in GStreamer 1.14.0. See the 'NEWS' file for more
information.
* gnu/packages/gstreamer.scm (gst-plugins-ugly)[inputs]: Remove lame, mpg123,
and twolame.
(gst-plugins-bad): Remove mpg123.
(gst-plugins-good): Add lame, mpg123, and twolame.
2018-10-16 13:40:14 -04:00
2d4a753a7c
gnu: xpra: Update to 2.4.
...
* gnu/packages/xorg.scm (xpra): Update to 2.4.
2018-10-16 14:27:28 +02:00
f1376bfabe
gnu: emacs-exwm: Update to 0.20.
...
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.20.
[source]: Remove emacs-exwm-fix-fullscreen-issue.patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: Remove patch.
2018-10-16 11:10:04 +02:00
503fe87098
gnu: emacs-xelb: Update to 0.16.
...
* gnu/packages/emacs.scm (emacs-xelb): Update to 0.16.
2018-10-16 10:57:53 +02:00
532f92c8f3
gnu: guix: Update to f9a8fce.
...
* gnu/packages/package-management.scm (guix): Update to f9a8fce
2018-10-15 23:54:20 +02:00
2ab321ca37
gnu: go@1.4: Add support for aarch64-linux.
...
* gnu/packages/golang.scm (go@1.4)[arguments]: Build for armhf-linux
when building for aarch64-linux.
[supported-systems]: Add aarch64-linux.
2018-10-15 14:21:07 +03:00
2c89b4b550
gnu: wine-staging: Update to 3.18.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.18.
* gnu/packages/wine.scm (wine-staging): Update to 3.18.
2018-10-15 10:50:48 +02:00
b7028a16e6
gnu: x265: Fix building on armhf-linux and aarch64-linux.
...
* gnu/packages/video.scm (x265)[source]: Update list of patches.
[arguments]: Change configure flag to ensure PIC for all architectures.
* gnu/packages/patches/x265-arm-asm-primitives.patch: Remove file.
* gnu/packages/patches/x265-detect512-all-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update patch registry.
2018-10-15 11:40:34 +03:00
2d5fa80e83
gnu: audacity: Update home page.
...
* gnu/packages/audio.scm (audacity)[home-page]: Update.
2018-10-15 06:19:38 +02:00
e02013b7de
gnu: hexchat: Use HTTPS home page.
...
* gnu/packages/messaging.scm (hexchat)[home-page]: Use HTTPS.
2018-10-15 06:19:38 +02:00
4a147986a0
gnu: haveged: Teach the controversy.
...
* gnu/packages/linux.scm (haveged)[description]: Suggest adding
additional entropy sources.
2018-10-15 06:19:38 +02:00
dfe05297f3
gnu: x265: Update to 2.9.
...
* gnu/packages/video.scm (x265): Update to 2.9.
[source]: Remove x265-fix-ppc64le-build.patch.
* gnu/packages/patches/x265-fix-ppc64le-build.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-15 06:19:37 +02:00
4702d45280
gnu: opensm: Update to 3.3.21.
...
* gnu/packages/fabric-management.scm (opensm): Update to 3.3.21.
[source]: Update tarball URI.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Rename 'doc' phase to 'install-doc'.
Omit AUTHORS and ChangeLog files. They are more than a decade old.
2018-10-15 06:19:37 +02:00
9cac043cc0
gnu: restic: Update to 0.9.3.
...
* gnu/packages/backup.scm (restic): Update to 0.9.3.
[arguments]: Disable 'restic self-update'.
2018-10-15 06:19:37 +02:00
3a6e1fe8c8
gnu: perl-xml-feed: Update to 0.55.
...
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.55.
2018-10-15 06:19:36 +02:00
66a9f08bb9
gnu: Add python-falcon-cors.
...
* gnu/packages/python-web.scm (python-falcon-cors): New variable.
2018-10-14 22:50:27 -04:00
bb840999c8
gnu: Add python-falcon.
...
* gnu/packages/python-web.scm (python-falcon): New variable.
2018-10-14 22:02:40 -04:00
0731fc1ce7
gnu: python-mimeparse: Update to 1.6.0.
...
* gnu/packages/python.scm (python-mimeparse): Update to 1.6.0.
[phases]: Enable tests with a custom check phase.
2018-10-14 22:02:40 -04:00
614f49c49a
gnu: linux-libre: Update to 4.18.14.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.14.
(%linux-libre-hash): Update hash.
2018-10-14 19:27:46 -04:00
b0fe6b5785
gnu: linux-libre@4.14: Update to 4.14.76.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.76.
(%linux-libre-4.14-hash): Update hash.
2018-10-14 19:13:56 -04:00
f266e82ad2
gnu: linux-libre@4.9: Update to 4.9.133.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.133.
2018-10-14 19:09:24 -04:00
2dd1bfcb58
gnu: linux-libre@4.4: Update to 4.4.161.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.161.
2018-10-14 19:07:35 -04:00
89f9df6cfd
gnu: icecat: Build with rust-1.24.
...
* gnu/packages/gnuzilla.scm (icecat)[native-inputs]: Use the oldest
compatable rust over newer releases when building icecat.
2018-10-14 09:42:54 +03:00
40f856fae8
gnu: csound: Update to 6.11.0.
...
* gnu/packages/audio.scm (csound): Update to 6.11.0.
[home-page]: Change to "https://csound.com/ ".
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-14 10:52:12 +08:00
d7814696b8
gnu: python-configargparse: Use pypi-uri.
...
* gnu/packages/python.scm (python-configargparse,
python2-configargparse)[source]: Use pypi-uri.
2018-10-12 23:42:43 -04:00
f1be3735db
gnu: khal: Update to 0.9.10.
...
* gnu/packages/calendar.scm (khal): Update to 0.9.10.
2018-10-12 23:42:43 -04:00
3c4d307e86
gnu: python-icalendar: Update to 4.0.2.
...
* gnu/packages/python.scm (python-icalendar: Update to 4.0.2.
2018-10-12 23:42:43 -04:00
3584eeb9a1
gnu: ImageMagick: Update to 6.9.10-12.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-12.
2018-10-12 23:42:39 -04:00
a60e868629
gnu: Wireshark: Update to 2.6.4 [fixes CVE-2018-{12086,18225,18226,18227}].
...
* gnu/packages/networking.scm (wireshark): Update to 2.6.4.
2018-10-12 22:18:22 -04:00
6826f1e1ed
gnu: Add libpd.
...
* gnu/packages/music.scm (libpd): New variable.
2018-10-12 22:23:58 +08:00
50135ff896
gnu: Remove duplicate ruby-yard package definition.
...
* gnu/packages/ruby.scm (ruby-yard): Remove one of the two package
definitions, and update the other to the latest release.
2018-10-12 08:23:17 +01:00
e9ab649e1e
gnu: Remove duplicate ruby-concurrent package definition.
...
* gnu/packages/ruby.scm (ruby-concurrent): Remove one of the two definitions
for this variable.
2018-10-12 08:23:15 +01:00
e1d1ec1435
gnu: u-boot: Update to 2018.09.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2018.09.
(u-boot-tools)[arguments]: Substitute "coverage" for "python-coverage". Update
workaround for only 99% test coverage.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-10-11 17:28:53 -04:00
fc346e30a0
gnu: godot: Update to 3.0.6.
...
* gnu/packages/game-development.scm (godot): Update to 3.0.6.
2018-10-11 16:42:04 -04:00
3bee949b03
gnu: Krita: Update to 4.1.5.
...
* gnu/packages/kde.scm (krita): Update to 4.1.5.
2018-10-11 13:10:50 -04:00
ed9d7cb4d9
gnu: guix-daemon: Run 'guix' from /var/guix/profiles/per-user/root.
...
Fixes <https://bugs.gnu.org/32183 >.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>
and Konrad Hinsen <konrad.hinsen@fastmail.net>.
* gnu/packages/package-management.scm (guix-daemon)[arguments]: Execute
/var/guix/profiles/per-user/root/current-guix/bin/guix instead of ~root/….
2018-10-11 18:29:11 +02:00
Ricardo Wurmus