Leo Famulari
70629b6d9a
gnu: perl-feed-find: Fix build with Perl 5.26.0.
...
* gnu/packages/web.scm (perl-feed-find)[arguments]: Set PERL_USE_UNSAFE_INC in
new 'set-env' phase.
2017-07-27 16:22:17 -04:00
Leo Famulari
f27954a077
gnu: perl-encode-hanextra: Fix build with Perl 5.26.0.
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* gnu/packages/perl.scm (perl-encode-hanextra)[arguments]: Set
PERL_USE_UNSAFE_INC in new 'set-env' phase.
2017-07-27 16:14:54 -04:00
Ricardo Wurmus
dd54d3d5da
gnu: po4a: Work around "dotless @INC" build issues.
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* gnu/packages/gettext.scm (po4a)[arguments]: Add build phase
"set-search-path".
2017-07-27 10:20:23 +02:00
Ricardo Wurmus
d39238cf3d
gnu: synfig: Fix boost build error.
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* gnu/packages/animation.scm (synfig)[arguments]: Add phase
"fix-boost-build-error".
2017-07-26 12:27:12 +02:00
Efraim Flashner
360f692783
gnu: perl-anyevent: Update to 7.14.
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* gnu/packages/libevent.scm (perl-anyevent): Update to 7.14.
2017-07-26 09:31:30 +03:00
Efraim Flashner
f6062e5432
gnu: perl-data-dumper-concise: Update to 2.023.
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* gnu/packages/perl.scm (perl-data-dumper-concise): Update to 2.023.
[source]: Update source uri.
2017-07-24 22:35:11 +03:00
Efraim Flashner
1627ca0494
gnu: perl-context-preserve: Update to 0.02.
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* gnu/packages/perl.scm (perl-context-preserve): Update to 0.02.
2017-07-24 22:35:09 +03:00
Ludovic Courtès
dc4f697f01
gnu: python-pexpect: Add dependency on the full Bash.
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Fixes a regression introduced in
704243e0c6
.
* gnu/packages/python.scm (python-pexpect)[native-inputs]: Add BASH.
2017-07-24 17:24:17 +02:00
Ludovic Courtès
3e6add96c5
gnu: gnome-mime-data: Do not use the bundled intltool.
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* gnu/packages/gnome.scm (gnome-mime-data)[arguments]: New field.
2017-07-24 17:11:30 +02:00
Ludovic Courtès
23212bf9e6
gnu: perl: Work around "dotless @INC" build issues.
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* gnu/packages/perl.scm (perl-task-weaken)[arguments]: New field.
(perl-unicode-normalize): Likewise.
* gnu/packages/web.scm (perl-http-server-simple)[arguments]: Add #:phases.
2017-07-24 16:36:13 +02:00
Ludovic Courtès
e2f24597a9
gnu: perl-regexp-common: Update to 2017060201.
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* gnu/packages/perl.scm (perl-regexp-common): Update to 2017060201.
2017-07-24 16:33:54 +02:00
Leo Famulari
e081e2dd0b
Merge branch 'master' into core-updates
2017-07-23 19:06:49 -04:00
Leo Famulari
2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc
.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
2017-07-23 19:05:37 -04:00
Leo Famulari
5391c6c9d2
gnu: bind: Update to 9.11.1-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c
.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
2017-07-23 19:05:37 -04:00
Mark H Weaver
c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses).
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This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).
* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading
indentation. Add (gnu packages linux) to the module imports.
2017-07-23 17:04:51 -04:00
Efraim Flashner
fd900d68a5
gnu: Add support for aarch64's compiled kernel.
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* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
2017-07-23 23:33:18 +03:00
Efraim Flashner
826adfdb37
gnu: Add xf86-video-freedreno.
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* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
2017-07-23 23:33:17 +03:00
Efraim Flashner
4adeb3f6e6
gnu: Add u-boot-odroid-c2.
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* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
2017-07-23 23:33:16 +03:00
Efraim Flashner
1313628339
gnu: u-boot: Update to 2017.07.
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* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
2017-07-23 23:33:13 +03:00
Marius Bakke
846cb73865
gnu: tevent: Update to 0.9.33.
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* gnu/packages/samba.scm (tevent): Update to 0.9.33.
2017-07-23 22:01:29 +02:00
Marius Bakke
85a5800e52
gnu: talloc: Update to 2.1.10.
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* gnu/packages/samba.scm (talloc): Update to 2.1.10.
2017-07-23 22:01:29 +02:00
Marius Bakke
fbed150133
gnu: ldb: Update to 1.1.31.
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* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
2017-07-23 22:01:28 +02:00
Marius Bakke
17c3f1fb67
gnu: cmocka: Update to 1.1.1.
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* gnu/packages/check.scm (cmocka): Update to 1.1.1.
2017-07-23 22:01:28 +02:00
Marius Bakke
38bb9df150
gnu: tdb: Update to 1.3.14.
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* gnu/packages/databases.scm (tdb): Update to 1.3.14.
2017-07-23 22:01:28 +02:00
Marius Bakke
09efef3384
gnu: python-scipy: Update to 0.19.1.
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* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
Marius Bakke
71d20587a5
gnu: python-matplotlib: Update to 2.0.2.
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* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
Marius Bakke
9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0.
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* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
2017-07-23 22:01:27 +02:00
Marius Bakke
007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax.
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* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
2017-07-23 22:01:27 +02:00
Oleg Pykhalov
6e864d0081
gnu: Add xmobar.
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gnu/packages/wm.scm (xmobar): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-23 15:29:36 -04:00
Ben Woodcroft
d3dce32216
gnu: metabat: Fix boost-related compilation issue.
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Reported by Leo Famulari.
* gnu/packages/patches/metabat-fix-boost-issue.patch: New file.
* gnu/packages/bioinformatics.scm (metabat): Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 22:35:52 +10:00
Efraim Flashner
8f155e3cff
gnu: bash-completion: Update to 2.7.
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* gnu/packages/bash.scm (bash-completion): Update to 2.7.
2017-07-23 11:05:54 +03:00
Leo Famulari
6c1a317e29
Merge branch 'master' into core-updates
2017-07-23 03:42:12 -04:00
ng0
9478c05955
gnu: getmail: Update to 5.1.
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* gnu/packages/mail.scm (getmail): Update to 5.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:34:47 -04:00
Ben Woodcroft
f3f68a442c
gnu: metabat: Update to 2.11.1.
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* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
897ab082b2
gnu: python-plastid: Update to 0.4.8.
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* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
0620387a59
gnu: bcftools: Update to 1.5.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag. Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
63fa0ffcd4
gnu: samtools: Update to 1.5.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
4fb6d1280e
gnu: htslib: Update to 1.5.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
60739965da
gnu: python-pysam: Update to 0.11.2.2.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
bca2c57658
gnu: bamm: Use htslib-1.3.
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* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
98593f9f51
gnu: bcftools: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch. Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
4ab1644049
gnu: samtools: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
2017-07-23 10:29:34 +10:00
Ben Woodcroft
a9e4a1e641
gnu: htslib: Update to 1.4.1.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
2017-07-23 10:29:34 +10:00
Ben Woodcroft
c842d42593
gnu: samtools: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
2017-07-23 10:29:34 +10:00
ng0
c62d1a6e6c
gnu: bspwm: Update to 0.9.3.
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* gnu/packages/wm.scm (bspwm): Update to 0.9.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:17:46 -04:00
ng0
7e3c977da6
gnu: Add oksh.
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* gnu/packages/shells.scm (oksh): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:15:21 -04:00
Ryan Moe
36378bd57e
gnu: quassel: Enable TLS.
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* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:04:53 -04:00
Tobias Geerinckx-Rice
e745221408
gnu: youtube-dl: Update to 2017.07.23.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
2017-07-23 01:59:32 +02:00
Tobias Geerinckx-Rice
4b8b245b83
gnu: mosh: Update to 1.3.2.
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* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
2017-07-23 01:27:29 +02:00
Ricardo Wurmus
a68a83f015
gnu: Add openmolar.
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* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:58 +02:00