Commit Graph

13541 Commits

Author SHA1 Message Date
Marius Bakke a351fc8369
Merge branch 'master' into staging 2016-12-04 17:41:36 +01:00
Alex Kost d1a5b20081
gnu: Move image viewers to (gnu packages image-viewers).
* gnu/packages/feh.scm (feh): Remove file.  Move package to...
* gnu/packages/geeqie.scm (geeqie): Likewise...
* gnu/packages/sxiv.scm (sxiv): Likewise...
* gnu/packages/image-viewers.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove files.
2016-12-04 17:42:05 +03:00
Alex Kost 023f0fb06e
gnu: exiv2: Move to (gnu packages image).
* gnu/packages/geeqie.scm (exiv2): Move to...
* gnu/packages/image.scm: ... here.
* gnu/packages/gnome.scm: Adjust the used modules.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gps.scm: Likewise.
2016-12-04 17:39:48 +03:00
Alex Kost c3a10d30d1
gnu: emms: Update to 4.2.
* gnu/packages/emacs.scm (emms): Update to 4.2.
[arguments]: EMMS installs "emms-print-metadata" now but assumes that
BINDIR exists, so do not install it manually in 'post-install' phase,
and make "/bin" directory in 'pre-install' phase.
2016-12-04 17:39:48 +03:00
Alex Kost c44ec4a8b4
gnu: emacs-with-editor: Update to 2.5.6.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.6.
2016-12-04 17:39:48 +03:00
Alex Kost 4e0d9fce5a
gnu: emacs-hl-todo: Update to 1.7.4.
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.7.4.
2016-12-04 17:39:47 +03:00
Ricardo Wurmus 951581a2d6
gnu: Add ingen.
* gnu/packages/music.scm (ingen): New variable.
2016-12-04 11:24:24 +01:00
Ricardo Wurmus f91d0d08dd
gnu: Add raul-devel.
* gnu/packages/audio.scm (raul-devel): New variable.
2016-12-04 11:17:46 +01:00
Ricardo Wurmus a9276c12ba
gnu: Add ganv-devel.
* gnu/packages/gtk.scm (ganv-devel): New variable.
2016-12-04 11:17:45 +01:00
Ricardo Wurmus 849c3d03f0
gnu: Add ams-lv2.
* gnu/packages/music.scm (ams-lv2): New variable.
2016-12-04 10:16:37 +01:00
Ricardo Wurmus 85f4863f3b
gnu: lvtk: Build UI library.
* gnu/packages/audio.scm (lvtk)[inputs]: Add gtkmm-2.
[arguments]: Pass "-std=c++11" flag.
2016-12-04 10:16:37 +01:00
Efraim Flashner 8a610eb605
gnu: Fix header in (gnu packages golang).
* gnu/packages/golang.scm: Replace header line declaring this file as
part of GNU Guix.
2016-12-04 08:50:30 +02:00
Efraim Flashner 8c15851717
gnu: Add econnman.
* gnu/packages/connman.scm (econnman): New variable.
2016-12-04 08:39:49 +02:00
Efraim Flashner 22fda787f6
gnu: Add lekha.
* gnu/packages/enlightenment.scm (lekha): New variable.
2016-12-04 08:39:49 +02:00
Efraim Flashner cf3504c69c
gnu: Add qsyncthingtray.
* gnu/packages/sync.scm (qsyncthingtray): New variable.
2016-12-04 08:39:48 +02:00
Efraim Flashner 760d6066f7
gnu: Rename owncloud.scm to sync.scm.
* gnu/packages/owncloud.scm: Rename to ...
* gnu/packages/sync.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2016-12-04 08:39:48 +02:00
Efraim Flashner 7526edb9d5
gnu: Add rkflashtool.
* gnu/packages/flashing-tools.scm (rkflashtool): New variable.
2016-12-04 08:39:48 +02:00
Efraim Flashner c7ad32d94a
gnu: uget: Add missing input.
* gnu/packages/bittorrent.scm (uget)[native-inputs]: Add intltool.
2016-12-04 08:39:48 +02:00
Efraim Flashner 12ed023fb7
gnu: tor: Update to 0.2.8.10.
* gnu/packages/tor.scm (tor): Update to 0.2.8.10.
2016-12-04 08:39:48 +02:00
Leo Famulari 4b569a4ff5
gnu: acme-client: Update to 0.1.15.
* gnu/packages/tls.scm (acme-client): Update to 0.1.15.
[native-inputs]: Add pkg-config.
2016-12-03 23:28:22 -05:00
Leo Famulari b172196976
gnu: taglib: Update to 1.10.
* gnu/packages/mp3.scm (taglib): Update to 1.10.
2016-12-03 20:52:00 -05:00
Ben Woodcroft e990c81d38
gnu: aragorn: Update to 1.2.38.
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.38.
2016-12-04 10:51:54 +10:00
Ricardo Wurmus 57b94e9d8d
gnu: Add highlight.
* gnu/packages/pretty-print.scm (highlight): New variable.
2016-12-03 23:26:16 +01:00
Ricardo Wurmus 3bec8a016f
gnu: git: Fix gitweb.
* gnu/packages/version-control.scm (git)[inputs]: Add perl-cgi.
[arguments]: Wrap "gitweb.cgi" with PERL5LIB.
2016-12-03 20:11:37 +01:00
Thomas Danckaert aa8c0ada2e
gnu: Add grantlee.
* gnu/packages/qt.scm (grantlee): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-03 18:55:01 +01:00
Thomas Danckaert f447dbc796
gnu: Add libksysguard.
* gnu/packages/kde.scm (libksysguard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-03 18:55:01 +01:00
Mark H Weaver 5bdec7d634
gnu: icecat: Update to 45.5.1-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 45.5.1-gnu1.
[source]: Remove temporary URI for 45.3 beta.  Fix URI computation.  Remove
outdated patches.  Add more cherry-picked bug fixes from upstream
mozilla-esr45.  Use 'list' instead of quasiquote in 'patches' field.
2016-12-03 12:29:53 -05:00
John Darrington 8e3f813f22
gnu: Add Kerberos client service.
* doc/guix.texi (Kerberos Services)[Krb5 Service]: New subsubheading.
* gnu/services/kerberos.scm (krb5-service-type): New variable.
* gnu/services/configuration.scm (configuration-field-serializer,
  configuration-field-getter): Export variables.
2016-12-03 18:00:32 +01:00
Ricardo Wurmus 9bad404355
gnu: Add fcgiwrap.
* gnu/packages/web.scm (fcgiwrap): New variable.
2016-12-03 17:06:51 +01:00
Ricardo Wurmus ab519cfa3d
gnu: Add fcgi.
* gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch: New file.
* gnu/packages/patches/fcgi-2.4.0-poll.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
* gnu/packages/web.scm (fcgi): New variable.
2016-12-03 17:06:47 +01:00
Mark H Weaver e9913f8271
gnu: linux-libre: Update to 4.8.12.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.12.
2016-12-03 10:20:59 -05:00
Mark H Weaver bc6d461249
gnu: linux-libre@4.4: Update to 4.4.36.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.36.
2016-12-03 10:20:00 -05:00
Mark H Weaver 80a359f293
gnu: linux-libre@4.1: Update to 4.1.36.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.36.
2016-12-03 10:19:08 -05:00
Ludovic Courtès 020434d497
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 463fb7d.
2016-12-03 12:05:32 +01:00
Leo Famulari a6c4790567
gnu: python-cryptography: Update to 1.6.
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update
to 1.6.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.6.
2016-12-03 02:39:09 -05:00
Leo Famulari 80b63e670e
gnu: tzdata: Update to 2016j.
* gnu/packages/base.scm (tzdata): Update to 2016j.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-12-02 13:16:35 -05:00
Hartmut Goebel 447b9473cb
gnu: dblatex: Update comment.
* gnu/packages/docbook.scm (dblatex)[arguments]: Detail comment about why
the use of setuptools needs to be disabled.
2016-12-02 18:07:36 +01:00
Hartmut Goebel b0aa6ede25
gnu: python-numpy: Fix inputs.
This fixes 2efabc5589, where some inputs
have been changed to propagated-inputs, but the propagated-inputs are
still extended from inputs and the inputs are not extended at all.

* gnu/packages/python.scm (python-numpy, python2-numpy)[inputs]:
Extend from python-numpy-bootstrap's package-inputs. [propagated-inputs]:
Extend from python-numpy-bootstrap's package-propagated-inputs.
2016-12-02 18:07:36 +01:00
Hartmut Goebel 77a6932adf
gnu: python2-ipython: Fix inputs.
This fixes e62600feb6, where the inputs
have been changed to native-inputs, but still extended from inputs.

* gnu/packages/python.scm (python2-ipython)[native-inputs]: Extend
from python-ipython's package-native-inputs.
2016-12-02 18:07:36 +01:00
Hartmut Goebel fe4a8da445
gnu: python-numpydoc: Correct inputs.
This does what 213d1745c6 was
supposed to do.

* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
Change first of the duplicate [native-inputs] definitions to
[propagated-inputs].
2016-12-02 18:07:36 +01:00
Hartmut Goebel e89aceab63
gnu: calibre: Do not use python setuptools for building.
* gnu/packages/ebook.scm (calibre)[arguments]: Set #:use-setuptools?
to false.
2016-12-02 18:07:36 +01:00
John Darrington bf7ef1bb84
gnu: file-system-shepherd-service: Use mount-file-system.
* gnu/services/base.scm (file-system-shepherd-service): Use
  mount-file-system instead of manually mounting the file system.
2016-12-02 17:43:30 +01:00
Marius Bakke d24727c019
gnu: Add dnscrypt-proxy.
* gnu/packages/dns.scm (dnscrypt-proxy): New variable.
2016-12-02 16:58:58 +01:00
Marius Bakke afe62a8bfb
gnu: Add dnscrypt-wrapper.
* gnu/packages/dns.scm (dnscrypt-wrapper): New variable.
2016-12-02 16:58:31 +01:00
Marius Bakke 5834a405ea
gnu: virt-manager: Do not use python setuptools for building.
* gnu/packages/qemu.scm (virt-manager)[arguments]: Set #use-setuptools? to #f.
2016-12-02 13:27:09 +01:00
Marius Bakke a189ac715d
gnu: bluez: Update to 5.43.
* gnu/packages/linux.scm (bluez): Update to 5.43.
2016-12-02 13:08:11 +01:00
Marius Bakke 17f2b485b1
gnu: mesa: Update to 13.0.2.
* gnu/packages/gl.scm (mesa): Update to 13.0.2.
[inputs]: Remove eudev.
[native-inputs]: Move 'mesa-wayland-egl-symbols-check-mips.patch' to ...
[source]: ... here.
[arguments]: Don't apply patch. Remove udev substitution.
2016-12-02 12:16:15 +01:00
Marius Bakke 2028be238b
gnu: dblatex: Update to 0.3.9.
* gnu/packages/docbook.scm (dblatex): Update to 0.3.9.
2016-12-02 12:01:42 +01:00
Marius Bakke 000c5a1163
gnu: libsigc++: Update to 2.10.0.
* gnu/packages/glib.scm (libsigc++): Update to 2.10.0.
2016-12-02 11:40:41 +01:00
Leo Famulari cb8edaac35
gnu: go-1.7: Update to 1.7.4 [security fixes].
* gnu/packages/golang.scm (go-1.7): Update to 1.7.4.
2016-12-02 03:52:06 -05:00
Eric Bavier 786b66ef75
gnu: vtk: Build with more system libraries.
* gnu/packages/vtk.scm (vtk)[inputs]: Add expat, freetype, hdf5, jpeg,
png, tiff, jsoncpp, libogg, libtheora, and zlib.
[arguments]: Use #:build-type keyword.  Add cmake flags for system
libraries.
2016-12-01 23:50:17 -06:00
Eric Bavier 0e988a8483
gnu: vtk: Upgrade to 7.1.0.
* gnu/packages/vtk.scm (vtk): Upgrade to 7.1.0.
[source]: Remove patches.  Use version-major+minor.
* gnu/packages/patches/vtk-mesa-10.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-01 23:50:17 -06:00
Eric Bavier 996f5ece8c
gnu: jsoncpp: Build shared libraries.
* gnu/packages/serialization.scm (jsoncpp)[arguments]: New field.
2016-12-01 23:50:17 -06:00
Eric Bavier a4b0bfb195
gnu: netcdf: Upgrade to 4.4.1.1.
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this.  Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
2016-12-01 23:50:09 -06:00
Efraim Flashner b45baef156
gnu: offlineimap: Update to 7.0.12.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.12.
2016-12-02 07:41:03 +02:00
Marius Bakke 3cc0342b45
gnu: dblatex: Do not use python setuptools for building.
* gnu/packages/docbook.scm (dblatex)[arguments]: Set #:use-setuptools?
to false.
2016-12-01 23:43:37 +01:00
Tomáš Čech 4b67098d9a
gnu: Add uget.
* gnu/packages/bittorrent.scm (uget): New variable.
2016-12-01 21:05:20 +01:00
David Thompson 02ecdeaa02
gnu: ardour: Update to 5.5.
* gnu/packages/audio.scm (ardour): Update to 5.5.
2016-12-01 13:22:24 -05:00
Efraim Flashner 329e432d60
gnu: python-gst: Update to 1.10.2.
* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.2.
2016-12-01 12:56:23 +02:00
Efraim Flashner 68c2ab8c22
gnu: gst-libav: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.2.
2016-12-01 12:55:45 +02:00
Efraim Flashner acc4d15c0d
gnu: gst-plugins-ugly: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.2.
2016-12-01 12:55:09 +02:00
Efraim Flashner 3103a71f65
gnu: gst-plugins-bad: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.2.
2016-12-01 12:54:19 +02:00
Efraim Flashner 1742132fb1
gnu: gst-plugins-good: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.2.
[source]: Remove patches.
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch,
gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch,
gnu/packages/patches/gst-plugins-good-fix-signedness.patch,
gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-12-01 12:53:30 +02:00
Efraim Flashner 2f0b72af50
gnu: gst-plugins-base: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.2.
2016-12-01 12:50:30 +02:00
Efraim Flashner a8ce5851ce
gnu: gstreamer: Update to 1.10.2.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.2.
2016-12-01 12:49:32 +02:00
Efraim Flashner d0b9c34fb3
gnu: perl-catalyst-action-rest: Change to new uri.
This is a followup to abafd66d04.

* gnu/packages/web.scm (perl-catalyst-action-rest)[source]: Update to
new source uri.
2016-12-01 12:44:44 +02:00
Efraim Flashner 9469275790
gnu: perl-catalyst-view-tt: Change source uri.
This is a followup to 776ca1cb22.

* gnu/packages/web.scm (perl-catalyst-view-tt)[source]: Change to new
source uri.
2016-12-01 12:44:44 +02:00
Efraim Flashner 08af1a420a
gnu: perl-http-server-simple: Change source uri.
This is a followup to 5b3646f100.

* gnu/packages/web.scm (perl-http-server-simple)[source]: Update to new
source uri.
2016-12-01 12:44:43 +02:00
Ricardo Wurmus 084f8e0435
gnu: perl-http-message: Update URLs.
* gnu/packages/web.scm (perl-http-message)[source]: Update URL.
[home-page]: Likewise.
2016-12-01 11:07:13 +01:00
Andy Patterson 4ce8860df9
services: cups: Follow symlinks when installing extensions.
* gnu/services/cups.scm (union-directory): Use "stat" when calling
"find-files" to follow symlinks.
2016-12-01 11:03:20 +01:00
Efraim Flashner 8e9badce00
gnu: nasm: Update to 2.12.02.
* gnu/packages/assembly.scm (nasm): Update to 2.12.02.
2016-12-01 10:50:46 +02:00
Efraim Flashner 161fb9be8e
gnu: nasm: Switch patch to phase.
* gnu/packages/assembly.scm (nasm)[source]: Remove patch.
[arguments]: Disable ps and pdf doc outputs in new phase.
* gnu/packages/patches/nasm-no-ps-pdf.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-01 10:47:29 +02:00
Efraim Flashner 4181c9393d
gnu: nasm: Allow building on all systems.
* gnu/packages/assembly.scm (nasm)[supported-systems]: Remove field.
2016-12-01 09:46:56 +02:00
Mark H Weaver 9689e71d2f
gnu: icecat: Add fixes for CVE-2016-9079 and other bugs.
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
CVE-2016-9079 and other selected fixes from the upstream mozilla-esr45
repository.
2016-11-30 20:51:05 -05:00
Mark H Weaver a9427ce556
gnu: linux-libre: Update to 4.8.11.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.11.
2016-11-30 20:24:07 -05:00
Mark H Weaver 7d9df7ca22
gnu: linux-libre@4.4: Update to 4.4.35.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.35.
2016-11-30 20:23:11 -05:00
Tobias Geerinckx-Rice e0593466a1
gnu: btrfs-progs: Update to 4.8.5.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.5.
2016-12-01 01:42:30 +01:00
Ludovic Courtès d30e578a00
gnu: Add Nagios.
* gnu/packages/monitoring.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-30 23:31:03 +01:00
Efraim Flashner ee264bbf90
gnu: perl-http-tiny: Update to 0.070.
* gnu/packages/web.scm (perl-http-tiny): Update to 0.070.
[propagated-inputs]: Add perl-mozilla-ca.
2016-11-30 21:45:18 +02:00
Efraim Flashner 5b3646f100
gnu: perl-http-server-simple: Update to 0.51.
* gnu/packages/web.scm (perl-http-server-simple): Update to 0.51.
2016-11-30 21:39:51 +02:00
Efraim Flashner a8a7227b7d
gnu: perl-http-message: Update to 6.11.
* gnu/packages/web.scm (perl-http-message): Update to 6.11.
[propagated-inputs]: Add perl-encode-locale.
2016-11-30 21:37:10 +02:00
Efraim Flashner 1ade054c2e
gnu: perl-http-cookiejar: Update to 0.008.
* gnu/packages/web.scm (perl-http-cookiejar): Update to 0.008.
[native-inputs]: Add perl-uri.
2016-11-30 21:33:05 +02:00
Efraim Flashner fb332b15aa
gnu: perl-libwww: Update to 6.15.
* gnu/packages/web.scm (perl-libwww): Update to 6.15.
[propagated-inputs]: Add perl-http-date, perl-http-message, perl-uri.
2016-11-30 21:26:50 +02:00
Efraim Flashner 1bb8ca409a
gnu: perl-http-body: Update to 1.22.
* gnu/packages/web.scm (perl-http-body): Update to 1.22.
2016-11-30 21:26:50 +02:00
Efraim Flashner 3700b27dc6
gnu: perl-html-parser: Update to 3.72.
* gnu/packages/web.scm (perl-html-parser): Update to 3.72.
[inputs]: Add perl-http-message.
2016-11-30 21:26:49 +02:00
Efraim Flashner 97c0cfdc3f
gnu: perl-finance-quote: Update to 1.38.
* gnu/packages/web.scm (perl-finance-quote): Update to 1.38.
2016-11-30 21:26:49 +02:00
Efraim Flashner 85b9c18b1a
gnu: perl-encode-locale: Update to 1.05.
* gnu/packages/web.scm (perl-encode-locale): Update to 1.05.
2016-11-30 21:26:48 +02:00
Efraim Flashner caa0194434
gnu: perl-cgi: Update to 4.35.
* gnu/packages/web.scm (perl-cgi): Update to 4.35.
2016-11-30 21:26:48 +02:00
Efraim Flashner 776ca1cb22
gnu: perl-catalyst-view-tt: Update to 0.44.
* gnu/packages/web.scm (perl-catalyst-view-tt): Update to 0.44.
[propagated-inputs]: Add perl-data-dump.
2016-11-30 21:26:48 +02:00
Efraim Flashner 0018eb57c9
gnu: perl-catalyst-view-json: Update to 0.36.
* gnu/packages/web.scm (perl-catalyst-view-json): Update to 0.36.
2016-11-30 21:26:48 +02:00
Efraim Flashner e8b20020ba
gnu: perl-catalyst-plugin-session: Update to 0.40.
* gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.40.
[propagated-inputs]: Add perl-mro-compat.
2016-11-30 21:26:47 +02:00
Efraim Flashner 9fc4145211
gnu: perl-catalyst-plugin-accesslog: Update to 1.10.
* gnu/packages/web.scm (perl-catalyst-plugin-accesslog): Update to 1.10.
[arguments]: Enable tests.
2016-11-30 21:26:47 +02:00
Efraim Flashner abafd66d04
gnu: perl-catalyst-action-rest: Update to 1.20.
* gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.20.
[propagated-inputs]: Add perl-config-general, perl-cpanel-json-xs,
perl-xml-simple.
2016-11-30 21:26:47 +02:00
Efraim Flashner faf806dba9
gnu: perl-apache-logformat-compiler: Update to 0.33.
* gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.33.
2016-11-30 21:26:47 +02:00
Efraim Flashner 1b49fc8fc3
gnu: perl-email-sender: Update to 1.300028.
* gnu/packages/mail.scm (perl-email-sender): Update to 1.300028.
2016-11-30 21:26:46 +02:00
Efraim Flashner 47b4cedf5d
gnu: perl-xml-xpath: Update to 1.40.
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.40.
2016-11-30 21:26:46 +02:00
Efraim Flashner 28a3b6b42c
gnu: perl-xml-compile-wsdl11: Update to 3.05.
* gnu/packages/xml.scm (perl-xml-compile-wsdl11): Update to 3.05.
2016-11-30 21:26:46 +02:00
Efraim Flashner 0c3e27a4f4
gnu: perl-xml-compile-soap: Update to 3.20.
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.20.
2016-11-30 21:26:45 +02:00
Efraim Flashner 6b9d3f5539
gnu: perl-xml-compile-cache: Update to 1.05.
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.05.
2016-11-30 21:26:45 +02:00
Efraim Flashner 18c832b02e
gnu: perl-xml-compile: Update to 1.54.
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.54.
2016-11-30 21:26:45 +02:00
Efraim Flashner 4e5465f255
gnu: perl-xml-dom: Update to 1.46.
* gnu/packages/xml.scm (perl-xml-dom): Update to 1.46.
[propagated-inputs]: Add perl-xml-parser.
2016-11-30 21:26:45 +02:00
Efraim Flashner f3aa34cc5a
gnu: perl-xml-libxml-simple: Update to 0.97.
* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.97.
2016-11-30 21:26:44 +02:00
Efraim Flashner ffbc7d6553
gnu: perl-graph-readwrite: Update to 2.09.
* gnu/packages/xml.scm (perl-graph-readwrite): Update to 2.09.
2016-11-30 21:26:44 +02:00
Efraim Flashner 467d4c85c3
gnu: perl-dbd-sqlite: Update to 1.52.
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.52.
2016-11-30 21:26:44 +02:00
Efraim Flashner ebd2dbbfc1
gnu: perl-dbix-class-schema-loader: Update to 0.07046.
* gnu/packages/databases.scm (perl-dbix-class-schema-loader):
Update to 0.07046.
2016-11-30 21:26:43 +02:00
Efraim Flashner 7a462b8023
gnu: perl-dbix-class-introspectablem2m: Update to 0.001002.
* gnu/packages/databases.scm (perl-dbix-class-introspectablem2m):
Update to 0.001002.
2016-11-30 21:26:43 +02:00
Efraim Flashner 180cb81b4c
gnu: perl-dbix-class-cursor-cached: Update to 1.001004.
* gnu/packages/databases.scm (perl-dbix-class-cursor-cached):
Update to 1.001004.
2016-11-30 21:26:43 +02:00
Efraim Flashner 5d78d746af
gnu: perl-dbix-class: Update to 0.082840.
* gnu/packages/databases.scm (perl-dbix-class): Update to 0.082840.
2016-11-30 21:26:43 +02:00
Efraim Flashner f363d5d854
gnu: perl-email-simple: Update to 2.211.
* gnu/packages/mail.scm (perl-email-simple): Update to 2.211.
2016-11-30 21:26:42 +02:00
Efraim Flashner e4146b0485
gnu: perl-namespace-autoclean: Update to 0.28.
* gnu/packages/perl.scm (perl-namespace-autoclean): Update to 0.28.
2016-11-30 21:26:42 +02:00
Efraim Flashner 199bbbe1ed
gnu: perl-class-method-modifiers: Update to 2.12.
* gnu/packages/perl.scm (perl-class-method-modifiers): Update to 2.12.
2016-11-30 21:26:42 +02:00
Efraim Flashner a883ba0246
gnu: perl-email-mime-contenttype: Update to 1.018.
* gnu/packages/mail.scm (perl-email-mime-contenttype): Update to 1.018.
2016-11-30 21:26:41 +02:00
Efraim Flashner b4522b9855
gnu: perl-email-mime: Update to 1.937.
* gnu/packages/mail.scm (perl-email-mime): Update to 1.937.
2016-11-30 21:26:41 +02:00
Efraim Flashner 1fb37ef06e
gnu: perl-email-messageid: Update to 1.406.
* gnu/packages/mail.scm (perl-email-messageid): Update to 1.406.
2016-11-30 21:26:41 +02:00
Efraim Flashner 151bba2b3d
gnu: perl-email-address: Update to 1.908.
* gnu/packages/mail.scm (perl-email-address): Update to 1.908.
2016-11-30 21:26:41 +02:00
Marius Bakke bc118f1a03
gnu: cairo: Eliminate graft.
* gnu/packages/gtk.scm (cairo)[replacement]: Remove field.
[source]: Add patch from 'cairo/fixed'.
(cairo-xcb)[source]: Inherit from cairo.
[replacement]: Remove field.
(cairo/fixed): Remove variable.
* gnu/packages/pdf.scm (poppler)[inputs]: Remove cairo replacement.
2016-11-30 18:31:37 +01:00
Marius Bakke 8b6aee5f82
gnu: dbus: Update to 1.10.14.
* gnu/packages/glib.scm (dbus): Update to 1.10.14.
2016-11-30 18:26:15 +01:00
Marius Bakke 86cf191426
gnu: dbus: Eliminate graft.
* gnu/packages/glib.scm (dbus)[replacement]: Remove field.
[version]: Update to 1.10.12.
[source]: Update hash.
(dbus-1.10.12): Remove variable.
2016-11-30 18:26:05 +01:00
Marius Bakke 35bbe88b3c
gnu: pixman: Eliminate graft.
* gnu/packages/xdisorg.scm (pixman)[replacement]: Remove field.
[source]: Add patch from 'pixman/fixed'.
(pixman/fixed): Remove variable.
2016-11-30 18:25:57 +01:00
Marius Bakke 8a7cbc882a
Merge branch 'master' into staging 2016-11-30 18:24:32 +01:00
Ludovic Courtès 72f0c5ea3c
gnu: iw: Update to 4.9.
* gnu/packages/linux.scm (iw): Update to 4.9.
2016-11-30 17:35:21 +01:00
Ludovic Courtès 873c469e74
gnu: pciutils: Update to 3.5.2.
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.2.
2016-11-30 17:35:21 +01:00
Ludovic Courtès 130079ae27
tests: Create a copy-on-write image instead of copying eagerly.
* gnu/tests/install.scm (qemu-command/writable-image): Invoke 'qemu-img
-o backing_file' instead of calling 'copy-file'.
2016-11-30 17:35:20 +01:00
Leo Famulari dcd9d1637a
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}].
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
2016-11-30 11:16:18 -05:00
Ricardo Wurmus 819c1945d1
services: nginx: Join strings with spaces.
* gnu/services/web.scm (config-domain-strings, config-index-strings):
Use "string-join" to join strings with spaces.
2016-11-30 16:03:18 +01:00
Ricardo Wurmus 7edd195ac8
gnu: gcj: Conditionally apply patch for armhf.
* gnu/packages/gcc.scm (gcj)[source]: Inherit from "gcc" package.
[native-inputs]: Conditionally add arm-patch.
[arguments]: Conditionally add phase "apply-arm-patch".
2016-11-30 16:03:11 +01:00
Leo Famulari 1d60f7c2b3
gnu: borg: Fix the test suite.
* gnu/packages/backup.scm (borg)[arguments]: Use
add-installed-pythonpath and disable tests related to FUSE.
2016-11-30 01:52:16 -05:00
Leo Famulari 663d5b5330
gnu: git: Update to 2.11.0.
* gnu/packages/version-control.scm (git): Update to 2.11.0.
2016-11-29 23:54:37 -05:00
Mathieu Lirzin a7cf4eb6d9
services: Add 'cuirass-service'.
* gnu/services/cuirass.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Continuous integration): New node.
2016-11-29 23:13:11 +01:00
Mathieu Lirzin 365de1e7a5
gnu: Add Cuirass.
* gnu/packages/ci.scm (cuirass): New variable.

Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
2016-11-29 23:10:11 +01:00
David Craven 43ddcd723e
gnu: guix-0.11.0: Add guile-ssh to inputs.
* gnu/packages/package-management.scm (guile-ssh)[inputs]: Add
  guile-ssh.
  [arguments]: Add guile-ssh to GUILE_LOAD_PATH.
2016-11-29 22:40:03 +01:00
Ricardo Wurmus a19a6d3ac8
gnu: frescobaldi: Disable tests.
* gnu/packages/music.scm (frescobaldi)[arguments]: Disable tests.
2016-11-29 22:06:50 +01:00
John Darrington 660516e875
gnu: Add zzuf
* gnu/packages/debug.scm (zzuf): New variable.
2016-11-29 21:32:09 +01:00
Tobias Geerinckx-Rice 3084a99084
gnu: libxi: Update to 1.7.8.
* gnu/packages/xorg.scm (libxi): Update to 1.7.8.
2016-11-29 19:16:15 +01:00
Tobias Geerinckx-Rice 7f81d7f4a5
gnu: libxfont: Update to 1.5.2.
* gnu/packages/xorg.scm (libxfont): Update to 1.5.2.
2016-11-29 19:15:48 +01:00
Tobias Geerinckx-Rice 7e49a851b5
gnu: gphoto2, libgphoto2: Use libjpeg-turbo.
* gnu/packages/photo.scm (gphoto2, libgphoto2)[inputs]: Add libjpeg-turbo.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 9b81876f5f
gnu: spice: Use libjpeg-turbo instead of libjpeg.
* gnu/packages/spice.scm (spice)[inputs]: Use libjpeg-turbo as suggested
during the build.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 7cba7647a5
gnu: icecat: Use libjpeg-turbo instead of bundled libjpeg.
* gnu/packages/gnuzilla.scm (icecat)[source]: Remove bundled libjpeg, which
is actually libjpeg-turbo.
[inputs]: Add libjpeg-turbo.
[arguments]: Use it.
2016-11-29 19:15:47 +01:00
Tobias Geerinckx-Rice 37e05d64e4
gnu: Add libjpeg-turbo.
* gnu/packages/image.scm (libjpeg-turbo): New variable.
2016-11-29 19:15:47 +01:00
Hartmut Goebel dc2ef09ad7
gnu: kauth: Fix cmake macros to be used by other packages.
* gnu/packages/kde-framework.scm (kauth)[phases]: New phase
  fix-cmake-install-paths.
2016-11-29 19:13:40 +01:00
Hartmut Goebel 7b722e3cba
gnu: extra-cmake-modules: Always install into /lib and not into /lib64.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules)[phases]:
  New phase fix-lib-path.
2016-11-29 19:11:09 +01:00
Hartmut Goebel c1265fcc70
gnu: Add ksyntaxhighlighting.
* gnu/packages/kde-frameworks.scm (ksyntaxhighlighting): New variable.
2016-11-29 19:11:09 +01:00
Hartmut Goebel 7feff6f6dc
gnu: Update kde-frameworks to 5.28.
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.28.1
  (extra-cmake-modules, attica, bluez-qt, breeze-icons, kapidox,
  karchive, kcodecs, kconfig, kcoreaddons, kdbusaddons, kdnssd,
  kguiaddons, ki18n, kidletime, kitemmodels, kitemviews, kplotting,
  kwayland, kwidgetsaddons, kwindowsystem, modemmanager-qt,
  networkmanager-qt, oxygen-icons, solid, sonnet, threadweaver, kauth,
  kcompletion, kcrash, kdoctools, kfilemetadata, kimageformats,
  kjobwidgets, knotifications, kpty, kunitconversion, baloo,
  kactivities, kactivities-stats, kbookmarks, kcmutils,
  kconfigwidgets, kdeclarative, kded, kdesignerplugin, kdesu,
  kemoticons, kglobalaccel, kiconthemes, kinit, kio, knewstuff,
  knotifyconfig, kparts, kpeople, krunner, kservice, ktexteditor,
  ktextwidgets, kwallet, kxmlgui, kxmlrpcclient, plasma-framework,
  frameworkintegration): Update to 5.28.0
2016-11-29 19:11:09 +01:00
Hartmut Goebel 03e856ddf5
Merge branch 'python-build-system'. 2016-11-29 19:06:27 +01:00
Hartmut Goebel 80983df357
gnu: python2-discogs-client: Remove python2-setuptools from inputs.
* gnu/packages/music.scm (python2-discogs-client): Use simply
  "package-with-python2". Remove inheriting from python-discogs-client
  since adding python2-setuptools to [native-inputs] has been the sole
  reason for inheriting.
  (python-discogs-client) Remove the now needless [properties]
  "python2-variant".
2016-11-29 19:02:35 +01:00
Efraim Flashner 072f1e22cc
gnu: dovecot: Update to 2.2.26.0.
* gnu/packages/mail.scm (dovecot): Update to 2.2.26.0.
[arguments]: Patch shebangs in test file.
2016-11-29 19:52:21 +02:00
Hartmut Goebel 3bf4280659
Merge branch 'master' into python-build-system 2016-11-29 18:47:16 +01:00
Hartmut Goebel 2cb64f3b1b
gnu: wicd: Fix build.
* gnu/packages/wicd.scm (wicd) [arguments]: Disable installation
  via setuptools (and --single-version-externally-managed).
2016-11-29 18:39:16 +01:00
Hartmut Goebel 388606a72b
gnu: wxPython: Remove useless inputs.
* gnu/packages/wxwidgets.scm (python2-wxpython) [native-inputs]: Remove
  setuptools, which is already included in python.
2016-11-29 18:39:15 +01:00
Hartmut Goebel 6f1dcafd81
gnu: wxPython: Fix build.
* gnu/packages/wxwidgets.scm (python2-wxpython) [arguments]: Disable
  installation via setuptools (and --single-version-externally-managed).
2016-11-29 18:39:14 +01:00
Ludovic Courtès 683c5ab70a
gnu: oxygen-icons: Add 'upstream-name' property.
Fixes <http://bugs.gnu.org/25020>.
Reported by Hartmut Goebel <h.goebel@goebel-consult.de>.

* gnu/packages/kde-frameworks.scm (oxygen-icons)[properties]: New
field.
2016-11-29 16:12:32 +01:00
Efraim Flashner a409de9811
gnu: efl: Update to 1.18.3.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.3.
2016-11-29 16:12:47 +02:00
Efraim Flashner 07cda02c5b
gnu: wine: Use 'modify-phases' syntax.
* gnu/packages/wine.scm (wine)[arguments]: Use 'modify-phases' syntax.
2016-11-29 16:12:47 +02:00
Efraim Flashner 658c987fdd
gnu: wine: Update to 1.9.24.
* gnu/packages/wine.scm (wine): Update to 1.9.24.
[home-page]: Use https.
2016-11-29 16:12:41 +02:00
Ricardo Wurmus ded69d6f86
gnu: Add non-session-manager.
* gnu/packages/music.scm (non-session-manager): New variable.
2016-11-29 10:59:17 +01:00
Efraim Flashner 0944bb1a6a
gnu: offlineimap: Update to 7.0.10.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.10.
2016-11-29 11:02:39 +02:00
Efraim Flashner c51d926c74
gnu: cairo: Fix CVE-2016-9082.
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb)[source]: Use patch.
[replacement]: New field, set false.
* gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be
replaced by a new custom patched cairo.
* gnu/packages/patches/cairo-CVE-2016-9082.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-11-29 09:45:48 +02:00
Efraim Flashner eb55f01821
gnu: Add viewnior.
* gnu/packages/image-viewers.scm (viewnior): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-29 09:38:33 +02:00
Efraim Flashner 22486fbea6
gnu: Add wgetpaste.
* gnu/packages/wget.scm (wgetpaste): New variable.
2016-11-29 09:35:39 +02:00
Efraim Flashner 3e757c005f
gnu: aspell-dict-en: Update to 2016.11.20-0.
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.11.20-0.
2016-11-29 09:35:11 +02:00
John Darrington 0c85db79f7
gnu: Allow nfs file systems to be automatically mounted.
* gnu/build/file-systems.scm (mount-file-system): Append target addr= when
mounting nfs filesystems.
2016-11-29 07:21:15 +01:00
Marius Bakke 7c635ed6f7
gnu: perl-dbd-mysql: Update to 4.041 [security fix].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.041.
[source]: Update CPAN URI.
2016-11-28 23:05:23 +01:00
Ludovic Courtès d2bcf35e18
vm: Avoid needless file copy in 'load-in-linux-vm'.
Reported by Chris Webber.

* gnu/build/vm.scm (load-in-linux-vm)[image-file]: Remove.  Directly
refer to OUTPUT instead.
2016-11-28 22:58:18 +01:00
Ricardo Wurmus bd3be46e7f
gnu: Add r-gkmsvm.
* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 419a8a186f
gnu: Add r-rocr.
* gnu/packages/statistics.scm (r-rocr): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 0cfe0570f2
gnu: Add r-gplots.
* gnu/packages/statistics.scm (r-gplots): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 6034cd905e
gnu: Add r-gdata.
* gnu/packages/statistics.scm (r-gdata): New variable.
2016-11-28 22:43:18 +01:00
Ricardo Wurmus 2d9fb1702f
gnu: Add r-seqgl.
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus c827f20286
gnu: Add r-chipkernels.
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools.
* gnu/packages/statistics.scm (r-gtools): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus f05c7eb48d
gnu: Add r-kernlab.
* gnu/packages/machine-learning.scm (r-kernlab): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc.
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus d71605294f
gnu: Add r-wgcna.
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster.
* gnu/packages/statistics.scm (r-fastcluster): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore.
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut.
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus e619a5c245
gnu: Add r-r4rna.
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams.
* gnu/packages/statistics.scm (r-spams): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets.
* gnu/packages/statistics.scm (r-googlesheets): New variable.
2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger.
* gnu/packages/statistics.scm (r-cellranger): New variable.
2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch.
* gnu/packages/statistics.scm (r-rematch): New variable.
2016-11-28 22:43:15 +01:00
Ricardo Wurmus e48ddb9628
doc: Suggest installing gvfs.
* gnu/system/examples/desktop.tmpl: Add gvfs to the system-wide list of
packages.
2016-11-28 22:09:38 +01:00
Ricardo Wurmus eb21d24806
gnu: lv2: Update to 1.14.0.
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
2016-11-28 22:08:37 +01:00
Ricardo Wurmus 1bbe79594e
gnu: non-sequencer: Update to 1.9.5-2.a22f33f.
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
2016-11-28 22:07:20 +01:00
Efraim Flashner 5e9cce55b5
gnu: ntp: Update to 4.2.8p9.
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
2016-11-28 21:56:30 +02:00
Efraim Flashner d35de59b64
gnu: ntp: Fix indentation.
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
2016-11-28 20:53:14 +02:00
John Darrington f0ddc5e55b
gnu: Add editres.
* gnu/packages/xorg.scm (editres): New variable.
2016-11-28 18:22:15 +01:00
Ben Woodcroft 9926875572
gnu: Add newick-utils.
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
2016-11-28 09:00:41 +10:00
Efraim Flashner c7a70c336f
gnu: jasper: Update to 2.0.0 [fixes security issues].
* gnu/packages/image.scm (jasper): Update to 2.0.0.
[build-system]: Switch to cmake-build-system.
2016-11-27 22:19:55 +02:00
Tobias Geerinckx-Rice f6c44a3f04
gnu: gphoto2: Update to 2.5.11.
* gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
2016-11-27 20:58:18 +01:00
Tobias Geerinckx-Rice 69874f5fd2
gnu: libgphoto2: Update to 2.5.11.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
2016-11-27 20:58:18 +01:00
Leo Famulari f27ec24d88
gnu: beets: Update to 1.4.1.
* gnu/packages/music.scm (beets): Update to 1.4.1.
[inputs]: Add python2-discogs-client.
2016-11-27 14:49:36 -05:00
Leo Famulari d3db5efbf9
gnu: Add python-discogs-client.
* gnu/packages/music.scm (python-discogs-client,
python2-discogs-client): New variables.
2016-11-27 14:49:36 -05:00
Leo Famulari 6782444764
gnu: python-rarfile: Update to 2.8.
* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-27 14:49:35 -05:00
Leo Famulari 8c4964dd51
gnu: python-jellyfish: Update to 0.5.6.
* gnu/packages/python.scm (python-jellyfish, python2-jellyfish): Update to
0.5.6.
2016-11-27 14:49:35 -05:00
Leo Famulari b04d9b97c4
gnu: python-pylast: Update 1.6.0.
* gnu/packages/music.scm (python-pylast, python2-pylast): Update to 1.6.0.
2016-11-27 14:49:35 -05:00
Leo Famulari daedf34db9
gnu: python-musicbrainzngs: Update to 0.6.
* gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): Update
to 0.6.
[arguments]: Disable the test suites.
2016-11-27 14:49:35 -05:00
Leo Famulari 38e81a2c55
gnu: python-munkres: Update to 1.0.8.
* gnu/packages/python.scm (python-munkres, python2-munkres): Update to 1.0.8.
2016-11-27 14:49:34 -05:00
Leo Famulari 4228a79e6f
gnu: python-mutagen: Update to 1.35.1.
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.35.1.
[native-inputs]: Add python-pytest.
2016-11-27 14:49:30 -05:00
Ricardo Wurmus 1bf5a7e920
gnu: gcj: Inherit source field from "gcc".
* gnu/packages/gcc.scm (gcj)[source]: Inherit source from "gcc" package.
2016-11-27 19:00:57 +01:00
Ricardo Wurmus bac6409970
gnu: gcj: Correct paths in ARM patch.
* gnu/packages/patches/gcj-arm-mode.patch: Strip directories.
2016-11-27 18:59:54 +01:00
Marius Bakke 8c4140e49e
gnu: notmuch: Update to 0.23.3.
* gnu/packages/mail.scm (notmuch): Update to 0.23.3.
[arguments]: Re-enable previously failing tests.
2016-11-27 18:29:44 +01:00
Leo Famulari cd569f0d29
gnu: gcj: Fix typo in patch filename.
This is a followup to commit dbf8f84f15.

Reported by quigonjinn on #guix.

* gnu/packages/gcc.scm (gcj)[source]: Fix typo.
2016-11-27 10:57:33 -05:00
Danny Milosavljevic 7574cecf0f
gnu: python2-flask: Pick up python-flask's native-inputs.
* gnu/packages/python.scm (python2-flask)[native-inputs]:
  Pick up python-flask's native-inputs.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-27 13:23:53 +01:00
Marius Bakke cf7daaf5da
gnu: docbook-xsl: Update to 1.79.1.
* gnu/packages/docbook.scm (docbook-xsl): Update to 1.79.1.
2016-11-27 11:26:49 +01:00
Marius Bakke 988e1dca4b
gnu: udisks: Update to 2.1.8.
* gnu/packages/freedesktop.scm (udisks): Update to 2.1.8.
[home-page]: Use HTTPS.
2016-11-27 11:13:50 +01:00
Maxim Cournoyer aef5055ff9
gnu: udisks: Add manpages.
* gnu/packages/freedesktop.scm (udisks)[native-inputs]: Add docbook-xml
and docbook-xsl.
[arguments]: Add #:make-flags to specify XML catalog files for manuals.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-27 11:10:31 +01:00
Ricardo Wurmus dbf8f84f15
gnu: gcj: Fix build on armhf.
* gnu/packages/patches/gcj-arm-mode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/gcc.scm (gcj): Add patch.
[arguments]: Delete failing tests.
2016-11-27 10:04:57 +01:00
Ricardo Wurmus 253cdd6c14
gnu: Add biber-2.5.
* gnu/packages/tex.scm (biber-2.5): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus d400068085
gnu: Add biber.
* gnu/packages/tex.scm (biber): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus ebcf74daf8
gnu: Add perl-text-bibtex.
* gnu/packages/tex.scm (perl-text-bibtex): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 93863a5e72
gnu: Add perl-xml-libxslt.
* gnu/packages/xml.scm (perl-xml-libxslt): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus df669244f9
gnu: perl-unicode-linebreak: Update to 2016.003.
* gnu/packages/perl.scm (perl-unicode-linebreak): Update to 2016.003.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 5d2ecbffb2
gnu: Add perl-unicode-collate.
* gnu/packages/perl.scm (perl-unicode-collate): New variable.
2016-11-27 09:48:43 +01:00
Ricardo Wurmus 37e7a4929f
gnu: Add perl-unicode-normalize.
* gnu/packages/perl.scm (perl-unicode-normalize): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus dc32ee5381
gnu: Add perl-text-roman.
* gnu/packages/perl.scm (perl-text-roman): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 44c31aaae8
gnu: Add perl-text-csv-xs.
* gnu/packages/perl.scm (perl-text-csv-xs): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 0ef5191c88
gnu: Add perl-sort-key.
* gnu/packages/perl.scm (perl-sort-key): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 3521dc9293
gnu: Add perl-mozilla-ca.
* gnu/packages/perl.scm (perl-mozilla-ca): New variable.
2016-11-27 09:48:42 +01:00
Ricardo Wurmus 37115dc650
gnu: Add perl-lingua-translit.
* gnu/packages/perl.scm (perl-lingua-translit): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus e9ef394ac9
gnu: Add perl-ipc-cmd.
* gnu/packages/perl.scm (perl-ipc-cmd): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 81157cf5a7
gnu: Add perl-extutils-libbuilder.
* gnu/packages/perl.scm (perl-extutils-libbuilder): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 0185442003
gnu: Add perl-encode-hanextra.
* gnu/packages/perl.scm (perl-encode-hanextra): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 2bc1b85ce6
gnu: Add perl-encode-jis2k.
* gnu/packages/perl.scm (perl-encode-jis2k): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 891d9679a2
gnu: Add perl-encode-eucjpascii.
* gnu/packages/perl.scm (perl-encode-eucjpascii): New variable.
2016-11-27 09:48:41 +01:00
Ricardo Wurmus 49a3fcc13c
gnu: perl-encode-detect: Move to alphabetical position.
* gnu/packages/perl.scm (perl-encode-detect): Move variable definition.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 7a146c2528
gnu: Add perl-datetime-calendar-julian.
* gnu/packages/perl.scm (perl-datetime-calendar-julian): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 36dd594316
gnu: Add perl-date-simple.
* gnu/packages/perl.scm (perl-date-simple): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus cc3dafbb02
gnu: Add perl-data-uniqid.
* gnu/packages/perl.scm (perl-data-uniqid): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 9413e95f59
gnu: Add perl-data-compare.
* gnu/packages/perl.scm (perl-data-compare): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus adbf4b944c
gnu: Add perl-business-ismn.
* gnu/packages/perl.scm (perl-business-ismn): New variable.
2016-11-27 09:48:40 +01:00
Ricardo Wurmus 296663839b
gnu: Add perl-tie-cycle.
* gnu/packages/perl.scm (perl-tie-cycle): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus e0b6accf19
gnu: Add perl-business-issn.
* gnu/packages/perl.scm (perl-business-issn): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 72f8646ef5
gnu: Add perl-business-isbn.
* gnu/packages/perl.scm (perl-business-isbn): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus a3f5beb7a2
gnu: Add perl-business-isbn-data.
* gnu/packages/perl.scm (perl-business-isbn-data): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 3f1df54cc0
gnu: Add perl-autovivification.
* gnu/packages/perl.scm (perl-autovivification): New variable.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus d4ba9a5f21
gnu: Add perl-mojolicious.
* gnu/packages/perl-web.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-27 09:48:39 +01:00
Ricardo Wurmus 45591fd7fd
gnu: Add threaded variants of fftw and fftwf for Ardour and mod-host.
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): New
variables.
* gnu/packages/audio.scm (ardour)[inputs]: Replace "fftw" and "fftwf"
with "fftw-with-threads" and "fftwf-with-threads", respectively.
* gnu/packages/music.scm (mod-host)[inputs]: Likewise.
2016-11-27 09:48:16 +01:00
宋文武 a82f0b3617
tests: Add 'opensmtpd-service-type' test.
* gnu/tests/mail.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-27 10:15:43 +08:00
Leo Famulari b46cefc954
gnu: libsodium: Update to 1.0.11.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.11.
2016-11-26 20:48:34 -05:00
Tobias Geerinckx-Rice d32f4800d6
gnu: libgphoto2: Add XML support.
* gnu/packages/photo.scm (libgphoto2)[inputs]: Add libxml2.
2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice 9dcc9bbf3b
gnu: gphoto2: Update to 2.5.10.
* gnu/packages/photo.scm (gphoto2): Update to 2.5.10.
2016-11-27 01:43:40 +01:00
Tobias Geerinckx-Rice 35c0ad4448
gnu: libgphoto2: Update to 2.5.10.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.10.
2016-11-27 01:43:39 +01:00
Toni Reina c3e2a2471c
gnu: Add Mozilla Fira Mono font.
* gnu/packages/fonts.scm (font-fira-mono): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-26 23:21:37 +01:00
Leo Famulari cd65d600ac
gnu: cyrus-sasl: Fix CVE-2013-4122.
* gnu/packages/patches/cyrus-sasl-CVE-2013-4122.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[replacement]: New field.
(cyrus-sasl/fixed): New variable.
[source]: Use patch.
2016-11-26 16:21:02 -05:00
Efraim Flashner 439a2f62ce
gnu: ffmpeg: Update to 3.2.1.
* gnu/packages/video.scm (ffmpeg): Update to 3.2.1.
2016-11-26 22:53:13 +02:00
Leo Famulari 9e46245b89
gnu: gst-plugins-good: Fix CVE-2016-{9634,9635,9636} and other security issues.
* gnu/packages/patches/gst-plugins-good-fix-crashes.patch,
gnu/packages/patches/gst-plugins-good-fix-invalid-read.patch,
gnu/packages/patches/gst-plugins-good-fix-signedness.patch,
gnu/packages/patches/gst-plugins-good-flic-bounds-check.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gstreamer.scm (gst-plugins-good): Use them.
2016-11-26 14:27:24 -05:00
Julien Lepiller 5305ed2002
services: Factorize configuration abstraction.
* gnu/services/mail.scm and gnu/services/cups.scm (&configuration-error)
(configuration-error, configuration-field-error)
(configuration-missing-field, configuration-field, serialize-configuration)
(validate-configuration, define-configuration, uglify-field-name)
(serialize-field, serialize-package, serialize-string)
(serialize-space-separated-string-list, space-separated-string-list?)
(serialize-file-name, file-name?, serialize-field-name)
(generate-documentation): Move duplicate code...
* gnu/services/configuration.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add configuration.scm.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-26 19:46:01 +01:00
Leo Famulari cf3678df6e
gnu: psyclpc: Update comment.
This is a followup to commit eaa45301f4.

* gnu/packages/messaging.scm (psyclpc): Update comment.
2016-11-26 13:36:51 -05:00
ng0 ebfc2ecc3c
gnu: Move content of (gnu packages psyc) into (gnu packages messaging).
* gnu/packages/psyc.scm (perl-net-psyc, libpsyc, psyclpc): Move this ...
* gnu/packages/messaging.scm (perl-net-psyc, libpsyc, psyclpc): ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove psyc.scm.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-26 13:23:46 -05:00
ng0 eaa45301f4
gnu: psyclpc: Upgrade to 20160821-2.61cf9aa.
This makes the package reproducible.

* gnu/packages/psyc.scm (psyclpc): Upgrade to 20160821-2.61cf9aa.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-26 13:23:46 -05:00
Danny Milosavljevic c6c80104ab
gnu: python-flask: Update to 0.11.1.
* gnu/packages/python.scm (python-flask): Update to 0.11.1.
[native-inputs]: Add python-click.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
Danny Milosavljevic 61684de287
gnu: python-pyopenssl: Update to 16.2.0.
* gnu/packages/python.scm (python-pyopenssl): Update to 16.2.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
Danny Milosavljevic b2e6e150aa
gnu: python-simplejson: Update to 3.10.0.
* gnu/packages/python.scm (python-simplejson): Update to 3.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 16:35:07 +01:00
ng0 faa29e4bdb
gnu: Add mumble.
* gnu/packages/telephony.scm (mumble): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 12:32:22 +01:00
Marius Bakke 4f55441fe3
gnu: transmission: Update to 2.92.
* gnu/packages/bittorrent.scm (transmission): Update to 2.92.
[inputs]: Add cyrus-sasl.
2016-11-26 12:32:01 +01:00
Ben Woodcroft 5e0a0f4226
gnu: roary: Update to 3.7.0.
* gnu/packages/bioinformatics.scm (roary): Update to 3.7.0.
2016-11-26 20:15:39 +10:00
Ben Woodcroft 31a9d653ad
gnu: Add proteinortho.
* gnu/packages/bioinformatics.scm (proteinortho): New variable.
2016-11-26 20:15:37 +10:00
Julien Lepiller d3eff97afd
gnu: Add python-polib.
* gnu/packages/python.scm (python-polib, python2-polib): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26 10:29:29 +01:00
John Darrington fc5dc4e81c
gnu: Whitespace changes
* gnu/services/kerberos.scm: Fold lines to 80 character limit.
2016-11-26 07:37:33 +01:00
Leo Famulari 53d892dd92
gnu: imagemagick: Update to 6.9.6-6 [fixes CVE-2016-9556].
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-6.
2016-11-26 00:38:45 -05:00
宋文武 f88371e866
services: Add opensmtpd service.
* gnu/services/mail.scm (<opensmtpd-configuration>): New record type.
(%default-opensmtpd-config-file, %opensmtpd-accounts): New variables.
(opensmtpd-shepherd-service, opensmtpd-activation): New procedures.
(opensmtpd-service-type): New variable.
* doc/guix.texi (Mail Services): Document it.
2016-11-26 12:50:11 +08:00
Leo Famulari 0959478c72
gnu: Add missing module import to (gnu packages ldc).
This is a followup to commit e44b511298.

* gnu/packages/ldc.scm: Import (gnu packages python).
2016-11-25 23:18:29 -05:00
Danny Milosavljevic e44b511298
gnu: ldc: Update to 0.17.2.
* gnu/packages/ldc.scm (ldc): Update to 0.17.2.
* gnu/packages/patches/ldc-disable-tests.patch: Fix timezone file name.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-25 23:54:51 +01:00
Ludovic Courtès 6634180f9e
gnu: guile-ssh: Update to 0.10.2.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.10.2.
[home-page]: Update.
[source]: Use the 'url-fetch' method and a GitHub generated
tarball.
[arguments] <autoreconf>: Remove now unneeded 'chmod' call.
2016-11-25 23:44:20 +01:00
Ricardo Wurmus 7276b5604d
gnu: hydrogen: Update to 0.9.7.
* gnu/packages/music.scm (hydrogen): Update to 0.9.7.
2016-11-25 21:44:16 +01:00
Leo Famulari c415f76302
gnu: python-betamax: Fix typo.
* gnu/packages/python.scm (python-betamax): Fix typo.
2016-11-25 11:31:43 -05:00
Leo Famulari de32aa74b4
Merge branch 'master' into python-build-system 2016-11-25 11:20:21 -05:00
Tobias Geerinckx-Rice d66cbd1adc
gnu: btrfs-progs: Update to 4.8.4.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.4.
2016-11-25 17:00:51 +01:00
Tobias Geerinckx-Rice fc89cb691d
gnu: lz4: Update to 1.7.4.2.
* gnu/packages/compression.scm (lz4): Update to 1.7.4.2.
2016-11-25 16:31:20 +01:00
Tobias Geerinckx-Rice dead1067c3
gnu: hplip: Update to 3.16.11.
* gnu/packages/cups.scm (hplip): Update to 3.16.11.
2016-11-25 16:31:10 +01:00
Ricardo Wurmus aaaf8b3844
gnu: qtractor: Update to 0.8.0.
* gnu/packages/music.scm (qtractor): Update to 0.8.0.
2016-11-25 13:08:06 +01:00
Alex Kost 1e34721435
gnu: qemu: Install all required info files.
* gnu/packages/qemu.scm (qemu)[arguments]: Adjust 'install-info' phase
to find all info files (including "*.info-N").
2016-11-25 16:09:22 +03:00
Theodoros Foradis 8f528bd442
gnu: Add kicad-library.
* gnu/packages/engineering.scm (kicad-library): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:11 -05:00
Theodoros Foradis befc9ff643
gnu: Add kicad.
* gnu/packages/engineering.scm (kicad): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:11 -05:00
Theodoros Foradis b353c7d201
gnu: Add python2-wxpython.
* gnu/packages/wxwidgets.scm (python2-wxpython): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:10 -05:00
Theodoros Foradis 2cd3b6fd03
gnu: Add wxwidgets-gtk2.
* gnu/packages/wxwidgets.scm (wxwidgets-gtk2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25 00:38:10 -05:00
Leo Famulari 88d45b74c1
gnu: nginx: Update to 1.11.6.
* gnu/packages/web.scm (nginx): Update to 1.11.6.
[arguments]: Remove the obsolete option --with-ipv6 from #:configure-flags.
2016-11-25 00:07:40 -05:00
Tobias Geerinckx-Rice e0f8a520ed
gnu: miniupnpc: Improve synopsis and description.
* gnu/packages/upnp.scm (miniupnp)[synopsis, description]: Edit, fix typos,
add some relevant (search) terms from the home page, and expand acronyms.
2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice 5af82630fe
gnu: miniupnpc: Use the correct ‘upnpc’ in ‘external-ip’.
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Add ‘qualify-paths’ phase.
2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice cdbdaf7b6b
gnu: miniupnpc: Use ‘modify-phases’ syntax.
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Use ‘modify-phases’.
2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice 2d3b0203f4
gnu: miniupnpc: Update to 2.0.
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.
2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice ade5848576
gnu: vim: Update to 8.0.0101.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0101.
2016-11-25 02:21:49 +01:00
Ludovic Courtès 13fb1bd94e
doc: Document encrypted root partitions.
This is a followup to f7f292d359.

* doc/guix.texi (Preparing for Installation): Give commands for
encrypted root installation.
(Proceeding with the Installation): Add item about mapped devices.
(File Systems): Mention that 'dependencies' can list <mapped-device>
objects.
* gnu/system/examples/desktop.tmpl (mapped-devices): New field.
(file-systems): Add 'dependencies' field.
2016-11-24 23:20:41 +01:00
Ludovic Courtès 030f59fac9
services: network-manager: Depend on 'wpa-supplicant'.
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* gnu/services/networking.scm (network-manager-shepherd-service)
[requirement]: Add 'wpa-supplicant'.
2016-11-24 21:43:48 +01:00
Ludovic Courtès 89007a0bb7
services: network-manager: Install polkit actions.
Reported by Chris Marusich <cmmarusich@gmail.com>
at <https://lists.gnu.org/archive/html/help-guix/2016-11/msg00038.html>.

* gnu/services/networking.scm (network-manager-service-type)[extensions]:
Add POLKIT-SERVICE-TYPE.
2016-11-24 21:43:47 +01:00
Ludovic Courtès 2e32869824
services: Move polkit to (gnu services dbus).
* gnu/services/desktop.scm (<polkit-configuration>, %polkit-accounts)
(%polkit-pam-services, polkit-directory, polkit-etc-files)
(polkit-setuid-programs, polkit-service-type, polkit-service): Move
to...
* gnu/services/dbus.scm: ... here.
2016-11-24 21:43:47 +01:00
Ludovic Courtès 62126576fc
gnu: hdf5: Build the C++ interface.
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
2016-11-24 21:43:47 +01:00
Tobias Geerinckx-Rice 6f09c100d9
gnu: vim: Update to 8.0.0096.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0096.
2016-11-24 16:57:22 +01:00
Tobias Geerinckx-Rice c50f2af9f8
gnu: ir: Use archived tarball and home page.
* gnu/packages/audio.scm (ir)[source]: Use a list of archive mirrors.
[home-page]: Link to an Internet Archive snapshot.
2016-11-24 06:34:37 +01:00
Tobias Geerinckx-Rice 2df984f278
gnu: ir: Use ‘modify-phases’ syntax.
* gnu/packages/audio.scm (ir)[arguments]: Use ‘modify-phases’.
2016-11-24 06:34:37 +01:00
Leo Famulari 0bd1097c50
gnu: libtiff: Update to 4.0.7.
* gnu/packages/image.scm (libtiff): Update to 4.0.7.
[source]: Update URL and remove obsolete patches.
[home-page]: Update URL.
[native-inputs]: Add gcc-5.
(libtiff-4.0.7): Delete variable.
* gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch,
gnu/packages/patches/libtiff-CVE-2016-3623.patch,
gnu/packages/patches/libtiff-CVE-2016-3945.patch,
gnu/packages/patches/libtiff-CVE-2016-3990.patch,
gnu/packages/patches/libtiff-CVE-2016-3991.patch,
gnu/packages/patches/libtiff-CVE-2016-5314.patch,
gnu/packages/patches/libtiff-CVE-2016-5321.patch,
gnu/packages/patches/libtiff-CVE-2016-5323.patch,
gnu/packages/patches/libtiff-oob-accesses-in-decode.patch,
gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-23 22:53:43 -05:00
Leo Famulari 2ac7d54616
Merge branch 'master' into staging 2016-11-23 22:24:52 -05:00
Ludovic Courtès cc73339b97
tests: Remove 'GUIX_LOCPATH' hack that had been added for glibc@2.23.
* gnu/tests/base.scm (run-basic-test)[test]("locale"): Remove
'GUIX_LOCPATH' hack, which is no longer needed since
commit 9f58fe3d1c.
2016-11-23 21:13:18 +01:00
Ludovic Courtès f7f292d359
install: Enable "cryptodisk" handling in GRUB.
This allows 'grub-install' to do the right thing when / or /boot is a
LUKS-encrypted partition.

Fixes <http://bugs.gnu.org/21843>.

* gnu/build/install.scm (install-grub): Add 'setenv' to set
'GRUB_ENABLE_CRYPTODISK'.
(wait-for-screen-text): New test.
* gnu/tests/base.scm (run-basic-test): Add #:initialization parameter
and honor it.
* gnu/tests/install.scm (%encrypted-root-os)[kernel-arguments]: Remove.
(%encrypted-root-installation-script): Pass '--uuid' to 'cryptsetup
luksFormat'.  Remove 'sed' invocation.
(enter-luks-passphrase): New procedure.
(%test-encrypted-os)[value]: Pass #:initialization to 'run-basic-test'.
2016-11-23 21:13:18 +01:00
Ludovic Courtès b7d408ec1b
mapped-devices: Use 'cryptsetup-static' in 'luks-device-mapping'.
* gnu/system/mapped-devices.scm (open-luks-device): Use
CRYPTSETUP-STATIC instead of CRYPTSETUP.  Use 'file-append'.
(close-luks-device): Likewise.
2016-11-23 21:13:18 +01:00
Ludovic Courtès fe93383350
marionette: Add 'marionette-screen-text' using OCR.
* gnu/build/marionette.scm (marionette-screen-text): New procedure.
* gnu/tests/base.scm (run-basic-test)["screen text"]: New test.
2016-11-23 21:13:18 +01:00
Ludovic Courtès f25c9ebc80
marionette: Delay synchronization with the host's REPL.
* gnu/build/marionette.scm (<marionette>)[marionette-repl]: Rename to...
[%marionette-repl]: ... this.
(marionette-repl): New macro.
(make-marionette): Wrap last 'read' call into 'delay', making the last
argument to 'marionette' a promise of a port.
(marionette-eval): Use 'force' in 'match' clause.
2016-11-23 21:13:18 +01:00
Leo Famulari 1c9f78eca1
gnu: python-passlib: Update to 1.7.0.
* gnu/packages/python.scm (python-passlib, python2-passlib): Update to 1.7.0.
2016-11-23 14:38:05 -05:00
Efraim Flashner 262c2d33bc
gnu: perl-digest-md5: Fix typo.
* gnu/packages/perl.scm (perl-digest-md5)[arguments]: Remove extra ')'.
2016-11-23 18:16:53 +02:00
ng0 8a28e717ba
gnu: Add perl-digest-md5.
* gnu/packages/perl.scm (perl-digest-md5): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-23 16:46:47 +01:00
Efraim Flashner bc05caee77
gnu: chez.scm: Add '#:use-module srfi srfi-1'.
This is a follow-up to 1e16648f82.

* gnu/packages/chez.scm: Add '#:use-module srfi srfi-1'.
2016-11-23 12:42:36 +02:00
Efraim Flashner 8553fe5734
gnu: Add aspell-dict-he.
* gnu/packages/aspell.scm (aspell-dict-he): New variable.
2016-11-23 12:38:28 +02:00
Efraim Flashner 1e16648f82
gnu: chez-scheme: Remove support for armhf.
* gnu/packages/chez.scm (chez-scheme)[supported-systems]: Remove
armhf-linux from the list of supported systems.
2016-11-23 12:37:17 +02:00
Mark H Weaver 08b3e4a970
gnu: linux-libre: Update to 4.8.10.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.10.
2016-11-22 21:59:54 -05:00
Mark H Weaver 4263eb4dd0
gnu: linux-libre@4.4: Update to 4.4.34.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.34.
2016-11-22 21:49:39 -05:00
Ludovic Courtès 66ebb5bca3
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to 1f410017.
2016-11-23 00:03:18 +01:00
Ludovic Courtès 35b2f18c5f
Revert "gnu: Update mit-krb5 to version 1.14.4."
This reverts commit 2947ff6430, which
would have caused too many rebuilds for 'master'.
2016-11-23 00:03:17 +01:00
Ludovic Courtès ad17470551
marionette: Avoid use of SIGALRM for timeouts.
* gnu/build/marionette.scm (make-marionette)[accept*]: New procedures.
Remove calls to 'sigaction'.  Use 'accept*' instead of 'accept'.
2016-11-22 23:45:08 +01:00
Ludovic Courtès 106b389e52
gnu: Add 'cryptsetup-static'.
* gnu/packages/cryptsetup.scm (static-library): New procedure.
(cryptsetup-static): New variable.
2016-11-22 23:45:01 +01:00
Ludovic Courtès 01f94cca19
gnu: Add 'lvm2-static'.
* gnu/packages/patches/lvm2-static-link.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (lvm2)[source](patches): New field.
(lvm2-static): New variable.
2016-11-22 22:59:31 +01:00
Ludovic Courtès 10da75dff8
gnu: grub: Add dependency on LVM2.
* gnu/packages/grub.scm (grub)[inputs]: Add LVM2.
2016-11-22 22:59:31 +01:00
Christopher Allan Webber 8957af324b
gnu: python-pyld: Update to 0.7.1.
* gnu/packages/python.scm (python-pyld): Update to 0.7.1.
2016-11-22 15:29:33 -06:00
Marius Bakke 61320932ed
gnu: harfbuzz: Update to 1.3.3.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.3.3.
[home-page]: Use HTTPS.
2016-11-22 21:46:59 +01:00
John Darrington 2947ff6430
gnu: Update mit-krb5 to version 1.14.4.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.4
2016-11-22 21:27:19 +01:00
Marius Bakke 1f410017ff
gnu: notmuch: Update to 0.23.2.
* gnu/packages/mail.scm (notmuch): Update to 0.23.2.
2016-11-22 20:44:53 +01:00
Marius Bakke 6317d36f3b
gnu: notmuch: Skip tests that fail with gnupg-2.1.16.
* gnu/packages/mail.scm (notmuch)[arguments]: Add environment variable
to skip tests that broke after gnupg-2.1.16.
2016-11-22 20:44:48 +01:00
Leo Famulari be72eb98fa
gnu: libtiff: Update replacement to 4.0.7.
* gnu/packages/image.scm (libtiff)[replacement]: Update to 4.0.7.
(libtiff-4.0.7): New variable. Update home-page and source URLs.
(libtiff/fixed): Delete variable.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch,
gnu/packages/patches/libtiff-CVE-2016-9273.patch,
gnu/packages/patches/libtiff-CVE-2016-9297.patch,
gnu/packages/patches/libtiff-CVE-2016-9448.patch,
gnu/packages/patches/libtiff-uint32-overflow.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-22 12:30:36 -05:00
Marius Bakke d8e3bb082d
gnu: vim: Update to 8.0.0095.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0095.
2016-11-22 17:33:07 +01:00
Kei Kebreau c3cc7d412a
gnu: Add espeak.
* gnu/packages/audio.scm (espeak): New variable.
2016-11-22 11:24:41 -05:00
Eric Bavier 52db41aff8
gnu: system: Add openfwwf-firmware to %base-firmware.
* gnu/system.scm (%base-firmware): Add openfwwf-firmware.
* doc/guix.texi (Hardware Considerations): Mention b43-open support.
(operating-system Reference)[firmware]: Likewise.
2016-11-22 09:38:36 -06:00
Eric Bavier e36a67c91a
gnu: Add openfwwf-firmware.
* gnu/packages/firmware.scm (b43-tools, openfwwf-firmware): New
variables.
2016-11-22 09:38:36 -06:00
Efraim Flashner 4a5ec78d5f
gnu: w3m: Update to 0.5.3+git20161120 [fixes security issues].
Fixes CVE-2016-9439 and others.

* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20161120.
2016-11-22 14:00:11 +02:00
Efraim Flashner 83a3e805be
gnu: w3m: Use 'modify-phases' syntax.
* gnu/packages/w3m.scm (w3m)[arguments]: Use 'modify-phases' syntax.
2016-11-22 14:00:11 +02:00
Ben Woodcroft ee7518a009
gnu: ruby: Update replacement to 2.3.3.
* gnu/packages/ruby.scm (ruby)[replacement]: Update to 2.3.3.
(ruby-2.3.2): Replace this ...
(ruby-2.3.3): ... with this.
2016-11-22 21:39:18 +10:00
Ben Woodcroft f4a8081d24
gnu: ruby: Update to 2.3.3.
* gnu/packages/ruby.scm (ruby): Update to 2.3.3.
2016-11-22 21:35:58 +10:00
Ben Woodcroft 8e5f8c98e2
gnu: diamond: Update to 0.8.27.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.27.
2016-11-22 21:01:21 +10:00
Ricardo Wurmus 1ea7969fa6
gnu: zynaddsubfx: Update to 3.0.0.
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.0.
[inputs]: Add "mesa".
2016-11-22 09:47:16 +01:00
Efraim Flashner dd3f8fe660
gnu: connman: Update to 1.33.
* gnu/packages/connman.scm (connman): Update to 1.33.
2016-11-21 23:52:19 +02:00
Petter daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>.
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-21 14:39:54 -05:00
Alex Kost 7c90d0f40e
gnu: packages: Use gettext-minimal.
* gnu/packages/crypto.scm (tomb): Use 'gettext-minimal' instead of
'gnu-gettext'.
* gnu/packages/emacs.scm (m17n-db): Likewise.
* gnu/packages/ftp.scm (weex): Likewise.
* gnu/packages/games.scm (chromium-bsu): Likewise.
* gnu/packages/image.scm (steghide): Likewise.
* gnu/packages/linux.scm (radeontop): Likewise.
* gnu/packages/mpd.scm (sonata): Likewise.
* gnu/packages/networking.scm (whois): Likewise.
* gnu/packages/package-management.scm (guix-0.11.0): Likewise.
* gnu/packages/psyc.scm (psyclpc): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
* gnu/packages/vim.scm (vim-full): Likewise.
2016-11-21 19:47:30 +03:00
Hartmut Goebel 856f30b000
gnu: shared-mime-info: Update to 1.7
* gnu/packages/gnome.scm (shared-mime-info): Update to 1.7.
2016-11-21 17:17:11 +01:00
Leo Famulari dc6d1b9609
gnu: libtiff: Fix URL in 'libtiff-uint32-overflow.patch'.
* gnu/packages/patches/libtiff-uint32-overflow.patch: Fix URL.
2016-11-21 11:16:37 -05:00
Leo Famulari 6305b81fed
gnu: swig: Update to 3.0.10.
* gnu/packages/swig.scm (swig): Update to 3.0.10.
2016-11-21 11:10:06 -05:00
Ludovic Courtès c9eae83ffa
gnu: dico: Update to 2.4.
* gnu/packages/dico.scm (dico): Update to 2.4.
[source]: Remove 'snippet'.
2016-11-21 15:25:38 +01:00
Ludovic Courtès b3131e2318
services: static-networking: Remove unused parameter.
This is a followup to e48fcd7b8d.

* gnu/services/networking.scm (static-networking-service): Remove #:net-tools.
(static-networking-service-type): Remove outdated comment.
2016-11-21 15:25:38 +01:00
ng0 e01e2c6c52
gnu: services: Add git-service.
* gnu/services/version-control.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Misellaneous Services)[Version Control]: New section.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
2016-11-21 20:37:43 +08:00
Ricardo Wurmus 2316078a4e
gnu: Add emacs-emms-mode-line-cycle.
* gnu/packages/emacs.scm (emacs-emms-mode-line-cycle): New variable.
2016-11-21 11:52:26 +01:00
Efraim Flashner 83b294b6d6
gnu: opusfile: Update to 0.8.
* gnu/packages/xiph.scm (opusfile): Update to 0.8.
2016-11-21 10:49:45 +02:00
Efraim Flashner b1e25b08f2
gnu: obs: Update to 0.16.6.
* gnu/packages/video.scm (obs): Update to 0.16.6.
2016-11-21 07:14:05 +02:00
Efraim Flashner 89a30625b9
gnu: mpv: Update to 0.22.0.
* gnu/packages/video.scm (mpv): Update to 0.22.0.
2016-11-21 06:57:16 +02:00
Efraim Flashner 7ceee88c43
gnu: chez-scheme: Properly identify system architecture.
* gnu/packages/chez.dcm (chez-scheme)[arguments]: Substitute `uname -m'
for `uname -a' in configure, allowing proper identification of the
machine architecture.
2016-11-21 06:57:16 +02:00
Ludovic Courtès e48fcd7b8d
services: static-networking: Avoid use of net-tools.
* gnu/services/networking.scm (<static-networking>)[net-tools]: Remove.
(static-networking-service-type): Use 'add-network-route/gateway' and
'delete-network-route' instead of NET-TOOLS.
(static-networking-service): Adjust accordingly.
2016-11-21 00:34:49 +01:00
Julien Lepiller 1845c2a436
gnu: Add php.
* gnu/packages/php.scm: New file.
* gnu/packages/patches/gd-fix-chunk-size-on-boundaries.patch: New file.
* gnu/packages/patches/gd-fix-truecolor-format-correction.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add php.
(dist_patch_DATA): Add gd patches.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2016-11-20 17:54:14 +01:00
Marius Bakke b28a33512f
gnu: Add sqlite-3.15.1.
* gnu/packages/databases.scm (sqlite-3.15.1): New variable.
2016-11-20 17:46:32 +01:00
Nicolas Goaziou 43ffe220c8
gnu: lilypond: Update to 2.19.51.
* gnu/packages/music.scm (lilypond): Update to 2.19.51.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-20 17:46:21 +01:00
Leo Famulari 25291aca74
gnu: python-icalendar: Update to 3.11.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.
2016-11-20 11:22:27 -05:00
Ben J Woodcroft 66b1bac355
gnu: ruby: Update to 2.3.2.
* gnu/packages/ruby.scm (ruby): Update to 2.3.2.
[replacement]: Remove field.
[origin]: Remove patch.
* gnu/packages/patches/ruby-symlinkfix.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-20 15:50:10 +10:00
Leo Famulari 764c566221
gnu: gnupg: Update to 2.1.16.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.16.
[arguments]: Remove obsolete substitution from 'patch-paths' phase.
Remove 'set-home' phase. Add 'set-gnupg-home' phase.
2016-11-19 23:43:32 -05:00
宋文武 9fff9e6484
gnu: gtk-engines: Don't propagate GTK+.
* gnu/packages/gtk.scm (gtk-engines): Move gtk+ to 'inputs'.
2016-11-20 12:02:04 +08:00
Mark H Weaver 5a1ef07d3e
gnu: linux-libre: Update to 4.8.9.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.9.
2016-11-19 22:29:38 -05:00
Mark H Weaver 13172f0d79
gnu: linux-libre@4.4: Update to 4.4.33.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.33.
2016-11-19 22:28:07 -05:00
Ben Woodcroft 9b62c5a8fb
gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900].
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.2): New variable.
2016-11-20 11:38:12 +10:00
Ludovic Courtès 966a543b36
gnu: Use 'mirror://' URLs in several places.
* gnu/packages/emacs.scm (m17n-lib)[source]: Use 'mirror://'.
* gnu/packages/games.scm (extremetuxracer)[source]: Likewise.
* gnu/packages/gcc.scm (%gcc-infrastructure): Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[source]: Likewise.
* gnu/packages/perl.scm (perl)[source]: Likewise.
* gnu/packages/telephony.scm (exosip)[source]: Likewise.
* gnu/packages/wm.scm (xmonad)[source]: Likewise.
(ghc-xmonad-contrib)[source]: Likewise.
2016-11-19 18:44:54 +01:00
Ludovic Courtès 6129dd8b59
vm: Disable initrd-time QEMU networking for VM images.
Fixes <http://bugs.gnu.org/24943>.
Reported by dian_cecht@zoho.com.

* gnu/system/vm.scm (system-qemu-image)[initrd]: Remove
 #:qemu-networking? #t.
(virtualized-operating-system): Likewise
2016-11-19 18:44:54 +01:00
Ricardo Wurmus 18675264c6
gnu: Add samplv1.
* gnu/packages/music.scm (samplv1): New variable.
2016-11-19 17:54:50 +01:00
Ricardo Wurmus cf9af706fb
gnu: Add drumkv1.
* gnu/packages/music.scm (drumkv1): New variable.
2016-11-19 17:54:50 +01:00
Leo Famulari 2fedcd1895
gnu: libtiff: Fix CVE-2016-9448.
* gnu/packages/patches/libtiff-CVE-2016-9448.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-19 11:31:00 -05:00
Leo Famulari b7e0f65b40
gnu: imagemagick: Update to 6.9.6-5.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-5.
2016-11-19 10:48:51 -05:00
Rene Saavedra 3446ffb57c
gnu: gnome-control-center: Add gdk-pixbuf input.
* gnu/packages/gnome.scm (gnome-control-center)[inputs]: Add gdk-pixbuf.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-19 10:38:01 -05:00
ng0 8f49395064
gnu: Add emacs-danneskjold-theme.
* gnu/packages/emacs.scm (emacs-danneskjold-theme): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 21:31:20 +08:00
ng0 5cd4129221
gnu: emacs-cyberpunk-theme: Update to 1.18.
* gnu/packages/emacs.scm (emacs-cyberpunk-theme): Update to 1.18.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 20:19:03 +08:00
Nicolas Goaziou fd057b84ec
gnu: emacs-org: Update to 20161118.
* gnu/packages/emacs.scm (emacs-org): Update to 20161118.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 20:09:50 +08:00
宋文武 e5aade794a
services: dicod-service: Honor 'dicod-configuration-dico'.
* gnu/services/dict.scm (dicod-shepherd-service): Use
'dicod-configuration-dico' of config.
2016-11-19 19:37:30 +08:00
宋文武 ae1e2133b9
gnu: opensmtpd: Correct CA certificates file path.
* gnu/packages/mail.scm (opensmtpd)[arguments]: Pass
'--with-path-CAfile=/etc/ssl/certs/ca-certificates.crt' to #:configure-flags.
2016-11-19 19:19:16 +08:00
Ricardo Wurmus cfcef2c2ac
gnu: gx-switchless-wah-lv2: Update to 0-2.7b0869120.
* gnu/packages/music.scm (gx-switchless-wah-lv2): Update to
0-2.7b0869120.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus 8e6f6503f0
gnu: gx-slow-gear-lv2: Update to 0-2.cb852e042.
* gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-2.cb852e042.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus a7cd2d44e1
gnu: gx-vintage-fuzz-master-lv2: Update to 0-2.0fec0bc1e.
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): Update to
0-2.0fec0bc1e.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus 1df4d85f8b
gnu: gx-super-fuzz-lv2: Update to 0-2.f40389575.
* gnu/packages/music.scm (gx-super-fuzz-lv2): Update to 0-2.f40389575.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:16 +01:00
Ricardo Wurmus c1802b0834
gnu: gx-voodoo-fuzz-lv2: Update to 0-2.aec7889b4.
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): Update to 0-2.aec7889b4.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus dad6cb50da
gnu: gx-hyperion-lv2: Update to 0-2.6a096a664.
* gnu/packages/music.scm (gx-hyperion-lv2): Update to 0-2.6a096a664.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus 31de5e2244
gnu: gx-saturator-lv2: Update to 0-2.0b581ac85.
* gnu/packages/music.scm (gx-saturator-lv2): Update to 0-2.0b581ac85.
[arguments]: Remove "escape-shell-commands" phase.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus 4ed4bb11cb
gnu: qsynth: Update to 0.4.3.
* gnu/packages/audio.scm (qsynth): Update to 0.4.3.
2016-11-19 11:26:15 +01:00
Ricardo Wurmus f2bd238bcd
gnu: synthv1: Update to 0.8.0.
* gnu/packages/music.scm (synthv1): Update to 0.8.0.
2016-11-19 11:26:15 +01:00
Nicolas Goaziou 2c453091e4
gnu: wireshark: Update to 2.2.2.
* gnu/packages/networking.scm (wireshark): Update to 2.2.2.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 16:33:55 +08:00
Nicolas Goaziou ce53f5cbf0
gnu: giac-xcas: Update to 1.2.2-103
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-103.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-11-19 16:28:58 +08:00
Muriithi Frederick Muriuki 6689c636d0
gnu: Add ruby-net-http-digest-auth.
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): New variable.
2016-11-19 15:16:19 +10:00
Ben J Woodcroft 4af80275a8
gnu: ruby-2.2: Update to 2.2.6.
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.6.
2016-11-19 07:48:01 +10:00
ng0 175d626478
gnu: mps-youtube: Disable tests.
* gnu/packages/video.scm (mps-youtube): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:16:48 -05:00
ng0 ed3fee5f7b
gnu: python-pafy: Disable tests.
* gnu/packages/python.scm (python-pafy): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:16:48 -05:00
Petter 01278f16a9
gnu: Add xcalib.
* gnu/packages/xdisorg (xcalib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-18 15:05:59 -05:00
Ludovic Courtès c2662820f3
gnu: emacs-org: Update to 20161102.
* gnu/packages/emacs.scm (emacs-org)[source]: Switch to elpa.gnu.org so
'guix refresh' can pick it up.  Update to 20161102.
2016-11-18 18:28:03 +01:00
Ludovic Courtès 8134dc1f74
gnu: guile@2.0.13: Fix non-determinism issue in REPL server test.
* gnu/packages/patches/guile-repl-server-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.0.13)[source]: Use it.
2016-11-18 18:28:02 +01:00
Danny Milosavljevic 651049789f
gnu: xonsh: Update to 0.4.7.
* gnu/packages/shells.scm (xonsh): Update to 0.4.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-18 17:02:30 +01:00
宋文武 d7da76044b
gnu: opensmtpd: Build man pages.
* gnu/packages/mail.scm (opensmtpd)[native-inputs]: Add groff.
2016-11-18 22:19:49 +08:00
Efraim Flashner 4d17fe2ad3
gnu: python-gst: Update to 1.10.1.
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.10.1.
2016-11-18 14:26:40 +02:00
Efraim Flashner 950548b0f7
gnu: gst-libav: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.1.
2016-11-18 14:26:40 +02:00
Efraim Flashner 2e747a3ff6
gnu: gst-plugins-ugly: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.1.
2016-11-18 14:26:39 +02:00
Efraim Flashner 95e89a4510
gnu: gst-plugins-bad: Update to 1.10.1 (Fixes security issues).
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.1.
2016-11-18 14:26:39 +02:00
Efraim Flashner faa3c13920
gnu: gst-plugins-good: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.1.
2016-11-18 10:01:29 +02:00
Efraim Flashner de0e591a53
gnu: gst-plugins-base: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.1.
2016-11-18 10:01:29 +02:00
Efraim Flashner 28e3663134
gnu: gstreamer: Update to 1.10.1.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.1.
2016-11-18 10:01:17 +02:00
Ludovic Courtès 1f9803c2a4
services: static-networking: Add netmask.
Reported by Mathieu Lirzin and Andreas Enge.

* gnu/services/networking.scm (<static-networking>)[netmask]: New
field.
(static-networking-service-type): Honor it.
* gnu/services/networking.scm (static-networking-service): Add #:netmask
and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
2016-11-17 23:21:48 +01:00
Ludovic Courtès 056d0b4034
tests: basic: Fix harmless thinko.
* gnu/tests/base.scm (run-basic-test)["login on tty1"]: Move the
file-waiting loop inside the 'marionette-eval' body.  Before that, we
were waiting for the file to appear on the host, which would never
happen, meaning that we were always waiting for 15 seconds.
2016-11-17 23:21:48 +01:00
Leo Famulari 175c910380
gnu: mpop: Use 'sourceforge' mirror.
This is a followup to commit 5837e69936.

* gnu/packages/mail.scm (mpop)[source]: Use 'sourceforge' mirror.
2016-11-17 15:56:06 -05:00
Arun Isaac 5837e69936
gnu: mpop: Update to 1.2.6.
* gnu/packages/mail.scm (mpop): Update to 1.2.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-17 17:45:38 +01:00
Efraim Flashner e5294500d6
gnu: obs: Update to 0.16.5.
* gnu/packages/video.scm (obs): Update to 0.16.5.
2016-11-17 07:26:20 +02:00
Efraim Flashner ca569eb89f
gnu: aria2: Update to 1.29.0.
* gnu/packages/bittorrent.scm (aria2): Update to 1.29.0.
2016-11-17 07:26:20 +02:00
Mark H Weaver 2f63e087fe
Revert "gnu: icecat: Enable gtk3 support."
This reverts commit eaf72e218e.

IceCat misbehaves with gtk+3, most notably the scroll bar handles are
invisible.  Here we revert back to gtk+2 until these problems can be
addressed.
2016-11-16 22:34:11 -05:00
Eric Bavier fe047e1380
gnu: Add Handbrake.
* gnu/packages/video.scm (handbrake): New variable.
* gnu/packages/patches/handbrake-pkg-config-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-16 20:58:12 -06:00
Leo Famulari 1339a8ed1c
gnu: libtiff: Fix some buffer overflows.
* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-16 19:59:28 -05:00
Leo Famulari 7cea56e2ac
gnu: libtiff: Fix CVE-2016-9297.
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
2016-11-16 19:59:24 -05:00
Efraim Flashner d87c201f96
gnu: jasper: Update to 1.900.29.
* gnu/packages/image.scm (jasper): Update to 1.900.29.
[inputs]: Add libjpeg.
2016-11-16 22:06:33 +02:00
Mark H Weaver 9cdb405b81
gnu: icecat: Remove unneeded patch.
This is a followup to commit 1a87aa7567.

* gnu/packages/gnuzilla.scm (icecat)[sources][patches]: Remove patch for
CVE-2016-5296, which is for a bundled copy of pixman that is
subsequently deleted by a snippet.
2016-11-16 14:14:25 -05:00
Marius Bakke d3e5dc0a44
gnu: perl-dbd-mysql: Update to 4.039 [Fixes CVE-2016-1249].
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.039.
[source]: Update CPAN URI.
2016-11-16 18:33:57 +00:00
Leo Famulari 1d87fdf531
gnu: ncmpcpp: Update to 0.7.7.
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.7.
2016-11-16 13:09:36 -05:00
Leo Famulari 0ffa8b8e7b
gnu: shotwell: Update to 0.25.0.1.
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.1.
2016-11-16 13:09:36 -05:00
Mark H Weaver 1a87aa7567
gnu: icecat: Add fixes from Firefox ESR 45.5.0.
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.

* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0.  Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-16 13:04:02 -05:00
Mark H Weaver 56ac2bf442
gnu: pixman: Add fix for CVE-2016-5296.
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
2016-11-16 13:03:56 -05:00
宋文武 eb4b3e4bef
gnu: opensmtpd: Update to 6.0.2p1.
* gnu/packages/mail.scm (opensmtpd): Update to 6.0.2p1.
[arguments]: Pass '--with-path-sock=/var/run' to #:configure-flags.
2016-11-16 21:00:40 +08:00
Mark H Weaver d55019136e
gnu: linux-libre: Update to 4.8.8.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.8.
2016-11-16 00:08:19 -05:00
Mark H Weaver 7d154949c9
gnu: linux-libre@4.4: Update to 4.4.32.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.32.
2016-11-16 00:06:46 -05:00
Hartmut Goebel d46491779e
gnu: python-awscli: fix inputs.
* gnu/packages/python.scm (python-awscli): [inputs] change to
  [native-inputs].
2016-11-15 22:36:22 +01:00
Hartmut Goebel 8fa6890b6c
gnu: python-botocore: fix inputs.
* gnu/packages/python.scm (python-botocore): [inputs] change to
  [native-inputs].
2016-11-15 22:36:21 +01:00
Hartmut Goebel 05e2e4cf00
gnu: python-pip: fix inputs.
* gnu/packages/python.scm (python-pip): [inputs] change to
  [native-inputs].
2016-11-15 22:36:21 +01:00
Hartmut Goebel e62600feb6
gnu: python2-ipython: fix inputs.
* gnu/packages/python.scm (python2-ipython): [inputs] change to
  [native-inputs].
2016-11-15 22:36:20 +01:00
Hartmut Goebel 5b1416d983
gnu: python-betamax: fix inputs.
* gnu/packages/python.scm (python-betamax): [inputs] change to
  [propagated-inputs].
2016-11-15 22:36:19 +01:00
Hartmut Goebel 1b5241c515
gnu: python-scikit-learn: Remove useless property "python2-variant".
The Python 2 packages does not change the definition, thus the
propery is useless.

* gnu/packages/python.scm (python-scikit-learn): [properties]:
  Remove  "python2-variant". (python2-scikit-learn): Remove
  now needless "strip-python2-variant".
2016-11-15 22:36:18 +01:00
Hartmut Goebel bac23672ee
gnu: python-tables: Remove python byte-code files from source.
* gnu/packages/python.scm (python-tables)[source]: Add snippet.
2016-11-15 22:36:18 +01:00
Hartmut Goebel b9c8ccce04
gnu: python-flake8-2.2.4: Remove python byte-code files from source.
* gnu/packages/python.scm (python-flake8-2.2.4)[source]: Add snippet.
2016-11-15 22:36:17 +01:00
Hartmut Goebel 011271c769
gnu: python-flake8: Remove python byte-code files from source.
* gnu/packages/python.scm (python-flake8)[source]: Add snippet.
2016-11-15 22:36:09 +01:00
Hartmut Goebel bac6816879
gnu: python-pytest-django: Remove needless propagated input "python-py".
This is already propagated by python-pytest.

* gnu/packages/python.scm (python-pytest-django) [propagated-inputs]:
  Remove python-py.
2016-11-15 22:32:02 +01:00
Hartmut Goebel de5bc89093
gnu: python2-pbcore: Fix inputs:
* gnu/packages/bioinformatics.scm (python2-pbcore) [inputs] change to
  [propagated-inputs]. [native-inputs]: Remove python-docutils, which
  comes with sphinx. [former propagated-inputs]: move all (which is only
  pyxb) to [inputs].
2016-11-15 22:32:01 +01:00
Hartmut Goebel 54c85e12fd
gnu: python2-warpedlmm: Remove phase remove-bin-directory.
This directory did contain contain wrappers for `nose`, which should not
be there anyway (since nose already was a native-input). The new
python build system no longer creates this directory, while the old one
did. (This difference is due to the bloody details of how packages are
installed.)

* gnu/packages/bioinformatics.scm (python2-warpedlmm)
  [modify-phases] Remove, since remove-bin-directory was the only
  modification here.
2016-11-15 22:32:00 +01:00
Hartmut Goebel 3221207417
gnu: khal: Fix build.
The old one was plain wrong and only worked by luck since the old
python build system did manipulate PYTHONPATH.

* gnu/packages/calendar.scm(khal)[phase manpage]: Use
  add-installed-pythonpath.
2016-11-15 22:31:59 +01:00
Hartmut Goebel 632735f215
gnu: python-testlib: Remove useless self-defined phase "unpack".
Unzipping is now done by standard-phase "unpack" automatically.

* gnu/packages/python.scm (python-testlib, python2-testlib)[phases] No longer
  replace "unpack".
2016-11-15 22:31:59 +01:00
Hartmut Goebel 251ed7f2fe
gnu: python-sphinxcontrib-newsfeed: Remove needless input.
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed) [propagated-inputs]:
  Remove python-docutils, already porpagated by python-sphinx.
2016-11-15 22:31:58 +01:00
Hartmut Goebel 38ceb106bd
gnu: python-nautilus: Correct inputs
* gnu/packages/python.scm(python-nautilus, python2-nautilus):
  [propagated-inputs] remove python-graphql-core, python-graphql-relay,
  python-requests: not listed and already propagated by others. Remove
  pycparser: not listed, not used in source. Move python-nose2 to
  [native-inputs] (used for tests only).
2016-11-15 22:31:57 +01:00
Hartmut Goebel 4e0969686c
gnu: python-freezegun: Correct input.
* u/packages/python.scm(python-freezegun)[native-inputs] move
  python-dateutils-2 to [propagated-inputs].
2016-11-15 22:31:56 +01:00
Hartmut Goebel fd1d6de729
gnu: python-consul: Correct inputs.
* gnu/packages/python.scm(python-consul)[native-inuts] move python-requests
  and python-six to [propagated-inputs].
2016-11-15 22:31:55 +01:00
Hartmut Goebel 2c199b5527
gnu: python-prompt-toolkit: Correct inputs
* gnu/packages/python.scm(python-prompt-toolkit)[native-inputs] move
  python-six to [propagated-inputs]. Remove now empty [native-inputs].
2016-11-15 22:31:55 +01:00
Hartmut Goebel d8ea5f2f27
gnu: python-responses: Correct inputs
* gnu/packages/python.scm(python-responses)[native-inputs] move python-cookies
  to [propagated-inputs]
2016-11-15 22:31:54 +01:00
Hartmut Goebel a0a0985978
gnu: python-sphinxcontrib-programoutput: Remove needless input.
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinxcontrib-programoutput)
  [propagated-inputs]: Remove python-docutils.
2016-11-15 22:31:53 +01:00
Hartmut Goebel 47c7dc4a3f
gnu: python-sphinx-repoze-autointerface: Remove needless input.
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinx-repoze-autointerface)
  [propagated-inputs]: Remove python-docutils.
2016-11-15 22:31:52 +01:00
Hartmut Goebel 06f1d73ed4
gnu: python-celery: Remove needless inputs.
These are indirect requirements and propagated by python-kombu.

* gnu/packages/python.scm(python-celery)[propagated-inputs] Remove python-amqp
  and python-anyjson.
2016-11-15 22:31:51 +01:00
Hartmut Goebel f7989b8bb0
gnu: Remove some outdated comments.
These comments were about setuptools used at runtime for pkg_resources.

* gnu/packages/python.scm: Remove some outdated comments.
2016-11-15 22:31:50 +01:00
Hartmut Goebel 7ba07edfb1
gnu: python-tox: Update FIXME comments.
* gnu/packages/python.scm(python-tox)[arguments]: Update FIXME
  comment. [inputs]: Add FIXME comment.
2016-11-15 22:31:49 +01:00
Hartmut Goebel 8322749a1c
gnu: python-urllib3: update comment.
* gnu/packages/python.scm(python-urllib3)[propagated-inputs]: Update comment.
2016-11-15 22:31:49 +01:00
Hartmut Goebel b9fc496ff6
gnu: python-wsgi-intercept: Correct inputs.
* gnu/packages/python.scm(python-wsgi-intercept): [native-inputs]: move
  python-six to [propagated-inputs].  [propagated-inputs] move
  python-httplib2, python-requests to [native-inputs].
2016-11-15 22:31:48 +01:00
Hartmut Goebel a5333f7c61
gnu: python-websocket-client: Correct inputs.
* gnu/packages/python.scm (python-websocket-client)[native-inputs] change to
  [propagated-inputs], remove a wrong comment.
2016-11-15 22:31:47 +01:00
Hartmut Goebel fd8e23b7b3
gnu: python-zope-security: Correct inputs.
* gnu/packages/python.scm(python-zope-security)[native-inputs] New element,
  move python-zope-component, python-zope-configuration, python-zope-location,
  python-zope-testrunner, python-zope-testing here.
2016-11-15 22:31:46 +01:00
Hartmut Goebel 861f70c9da
gnu: python-configobj: Correct inputs.
* gnu/packages/python.scm(python-configobj)[native-inputs] change to
  [propagated-inputs].
2016-11-15 22:31:46 +01:00
Hartmut Goebel d27f176a72
gnu: python-zope-location: Correct inputs.
* gnu/packages/python.scm(python-zope-location)[native-inputs] change to
  [propagated-inputs].
2016-11-15 22:31:45 +01:00
Hartmut Goebel 38d480a8a6
gnu: python-zope-interface: Correct inputs.
* gnu/packages/python.scm(python-zope-interface)[propagated-inputs] change to
  [native-inputs].
2016-11-15 22:31:44 +01:00
Hartmut Goebel 2887700e4d
gnu: python-pathpy: Build documentation.
* gnu/packages/python.scm (python-pathpy, python2-pathpy)
  [output] Add output "doc".
  [native-inputs]: Add python-sphinx and python-rst.linker
  [build-doc], [install-doc]: New build phases.
2016-11-15 22:31:43 +01:00
Hartmut Goebel fe94cf0cdd
gnu: Add python-rst.linker, python2-rst.linker.
* gnu/packages/python.scm (python-rst.linker, python2-rst.linker): New
  variables.
2016-11-15 22:31:43 +01:00
Hartmut Goebel 213d1745c6
gnu: python-numpydoc: Correct inputs.
* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
  [native-inputs]: Remove python-docutils. Move python-shpinx to
  [propagated-inputs].
2016-11-15 22:31:42 +01:00
Hartmut Goebel cf8124b017
gnu: python-redis: Remove unused input.
* gnu/packages/python.scm (python-redis, python2-redis) Comment out
  [native-inputs] since these are used only for running tests, which
  is disabled since it requires a Redis server.
2016-11-15 22:31:41 +01:00
Hartmut Goebel 1273359455
gnu: python2-scikit-image: Remove needless native-input and inheritance.
Remove last additional [native-inputs] python-mock, thus there is no
need to inherit python-scikit-image package. Simply use
package-with-python2.

* gnu/packages/python.scm: (python-scikit-image): [properties]: Remove
  python2-variant. (python2-scikit-image) Use simply
  "package-with-python2" after removing last [native-inputs] python-mock.
2016-11-15 22:31:40 +01:00
Hartmut Goebel ddd1dc3d2d
gnu: python2-scikit-image: Remove needless propagated-input.
* gnu/packages/python.scm: (python2-scikit-image)
  [propagated-inputs]: Remove python-pytz, it does not occur anywhere in
  the source.
2016-11-15 22:31:39 +01:00
Hartmut Goebel b83e23337b
gnu: python-scikit-image: Correct inputs.
* gnu/packages/python.scm: (python-scikit-image, python2-scikit-image)
  [propagated-inputs]: Move python-numpy and python-six to [native-inputs].
  Add comment.
2016-11-15 22:31:39 +01:00
Hartmut Goebel 9fbe7b2bca
gnu: python-blinker: No longer disable tests.
The package does not provide tests, but there is no need to disable them.
Having them enabled allows running them if some newer version may provide
tests.

* gnu/package/python.scm (python-blinker, python2-blinker):
  [arguments]: Remove.
2016-11-15 22:31:38 +01:00
Hartmut Goebel 7c88bcf4bb
gnu: python-feedgenerator: Remove python byte-code files from source.
* gnu/packages/python.scm (python-feedgenerator, python2-feedgenerator)
  [source]: Add snippet.
2016-11-15 22:31:37 +01:00
Hartmut Goebel f052ec9a50
gnu: python-joblib: Add comment.
* gnu/packages/python.scm (python-joblib): Add comment.
2016-11-15 22:31:36 +01:00
Hartmut Goebel 6aa5f1ca24
gnu: python-joblib: Remove python byte-code files from source.
* gnu/packages/python.scm (python-joblib, python2-joblib)[source]:
  Add snippet.
2016-11-15 22:31:36 +01:00
Hartmut Goebel bb06aa3446
gnu: python-oauthlib, python-oauthlib2: Correct inputs.
* gnu/packages/python.scm (python-oauthlib) [propagated-inputs] Move all to
  [native-inputs]. [native-inputs]: Remove python-mock, python-coverage.
  (python2-oauthlib)[native-inputs]: Add python2-mock.
2016-11-15 22:31:35 +01:00
Hartmut Goebel 130fe99410
gnu: python-pyjwt: Add missing inputs and enable test-suite.
* gnu/packages/python.scm (python-pyjwt) [native-inputs]: Add
  python-pytest and python-pytest-cov. [arguments]. Remove.
2016-11-15 22:31:34 +01:00
Hartmut Goebel f78e1c27ef
gnu: python-cov-core: Fix imports.
* gnu/packages/python.scm (python-cov-core) [inputs]: change
  to [propagated-inputs].
2016-11-15 22:31:33 +01:00
Hartmut Goebel 25b2c47d75
gnu: python-statsmodels: Fix build
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
2016-11-15 22:31:33 +01:00
Hartmut Goebel d5e41cf28c
gnu: pytest-mock: remove needless propagated input "python-py".
This is not listed as an requirement and is already propagated by
python-pytest.

* gnu/packages/python.scm (python-pytest-mock, python2-pytest-mock):
  [propagated-inputs]: Remove python-py.
2016-11-15 22:31:32 +01:00
Hartmut Goebel 8e73d3baab
gnu: python-testscenarios: remove needless input "mimetools".
This does not occur in the source.

* gnu/packages/python.scm (python-testscenarios, python2-testscenarios)
  [propagated-inputs]: Remove python-mimeparse.
2016-11-15 22:31:31 +01:00
Hartmut Goebel e0ed457944
gnu: python-setuptools: remove pre-built binaries from source.
These are used to build self-extracting installers for Windows.

* gnu/packages/python.scm (python-setuptools, python2-setuptools) [source]:
  Add snippet to delete *.exe files.
2016-11-15 22:31:30 +01:00
Hartmut Goebel c4516ad206
gnu: python-pytest-xdist: Remove needless input python-apipkg.
* gnu/packages/python.scm (python-pytest-xdist): Remove input
  python-apipkg.
2016-11-15 22:31:29 +01:00
Hartmut Goebel b52ad3714a
gnu: python-subunit, python-testrepository: Fix inputs
* gnu/packages/python.scm (python-subunit, python2-subunit):
  [propagated-inputs]:: Add python-extras, remove python-testtools, move
  python-testscenarios to [native-inputs].  (python-testrepository,
  python2-testrepository): [native-inputs] move python-fixtures and
  python-subunit to [propagated-inputs]
2016-11-15 22:31:29 +01:00
Hartmut Goebel 521b77729e
gnu: python-scripttest: Correct inputs.
python-pytest is only required for testing, not at run-time.

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [propagated-inputs] Move python-pytest to [native-inputs].
2016-11-15 22:31:28 +01:00
Hartmut Goebel abcc7a0eb9
gnu: python-pandas: Fix build.
* gnu/packages/python.scm (python-pandas): Add python-cython to
  native-inputs.
2016-11-15 22:31:27 +01:00
Hartmut Goebel e116d100fd
gnu: openstack: Correct inputs.
* gnu/packages/openstack.scm (python-os-testr) Propagate input
  python-subunit, change all other inputs to native-inputs.
  (python-mox3): Remove needless input python-six.
  (python-stevedore, python-requests-mock): Move python-pbr to
  native-inputs.
2016-11-15 22:31:27 +01:00
Hartmut Goebel 48160559a1
gnu: thefuck: Fix build.
Requires setuptools >= 17.1 due to some features used, while our
python currently only includes 12.0.

* gnu/packages/admin.scm (thefuck): Add setuptools to native-inputs.
2016-11-15 22:31:26 +01:00
Hartmut Goebel a08a835034
gnu: vdirsyncer: Fix build by setting correct PYTHONPATH.
For thus, use add-installed-pythonpath.

* gnu/packages/dav.scm (vdirsyncer): set PYTHONPATH using
  add-installed-pythonpath.
2016-11-15 22:31:25 +01:00
Hartmut Goebel eee5cd0440
gnu: python-ipython: Fix build.
* gnu/packages/python.scm (python-ipython, python2-ipython) [check,
  install-doc] set PYTHONPATH prior to running tests.
2016-11-15 22:31:24 +01:00
Hartmut Goebel d548e6aa06
gnu: python-scipy: Fix build.
* gnu/packages/python.scm (python-scipy) Use add-installed-pythonpath.  Add
  dummy newlines character to string to make emacs happy.
2016-11-15 22:31:23 +01:00
Hartmut Goebel ca33a3ad97
gnu: python-matplotlib: Fix build.
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct
  inputs. [install-doc] set PYTHONPATH prior to building docs.
2016-11-15 22:31:23 +01:00
Hartmut Goebel 2efabc5589
gnu: python-numpy-bootstrap, python-numpy: Fix build.
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use
  modify-phases, add dummy newlines character to string to make emacs happy,
  set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set
  PYTHONPATH prior to building docs.
2016-11-15 22:31:22 +01:00
Hartmut Goebel 9e8c6a37db
gnu: python-fonttools: Remove intervening directory in site-packges.
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
2016-11-15 22:31:21 +01:00
Hartmut Goebel b72ac1b54b
gnu: python2-pysnptools: Correct inputs.
dateutil, pytz, and six do not occur in the code.

Remove python-dateutil, python-pytz, python-six from inputs;
Move python-cython to native-inputs; move python-pandas to
propagated-inputs.
2016-11-15 22:31:21 +01:00
Hartmut Goebel e408ffc302
gnu: python-zope-testing: Remove needless input.
* gnu/packages.python.scm (python-zope-testing): Remove
  python-zope-interface from native-imports.
2016-11-15 22:31:20 +01:00
Hartmut Goebel 47f77210fc
gnu: python-zope-schema: Add missing inputs.
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and
  python-nose to native-inputs.
2016-11-15 22:31:19 +01:00
Hartmut Goebel 05c2fd3685
gnu: python-pytest-flakes: Fix build.
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
2016-11-15 22:31:18 +01:00
Hartmut Goebel 6151120a71
gnu: python-pillow: Fix build.
* gnu/packages/python.scm (python-pillow)[check-installed]: Add
  installed site-package to PYTHONPATH.
2016-11-15 22:31:17 +01:00
Hartmut Goebel 5e1c9d242a
gnu: python-singledispatch: correct inputs.
python-six is only required for conversion, not at run-time

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [inputs] Move python-six to [native-inputs].
2016-11-15 22:31:17 +01:00
Hartmut Goebel d2a8db92fe
gnu: python-pbr: Rework bootstrapping.
For breaking the cyclic build, formerly a separate (older) version was used
for bootstrapping.  Now we use the same version just without tests and without
test dependencies.

* gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11):
  replace by … (python-pbr-minimal, python2-pbr-minimal).
  (python-pbr) inherit from python-pbr-minimal, adding the requirements for
  testing and building the documentation.
  (python-fixtures) [native-inputs] Use python-pbr-minimal here.
  (python-testrepository): [native-inputs] Add it here, it was a missing
  dependency.
2016-11-15 22:31:16 +01:00
Hartmut Goebel b2e66edf52
gnu: python-testrepositoryfixture: Correct inputs.
python-fixtures is required only for building.

* gnu/packages/python.scm (python-testrepository) [propagated-inputs] move
  python-fixtures to [native-inputs].
2016-11-15 22:31:15 +01:00
Hartmut Goebel 424f0a4175
gnu: python-fixture: Enable tests.
* gnu/packages/python.scm (python-fixtures) [arguments] remove
  keyword `#:tests?`.
2016-11-15 22:31:14 +01:00
Hartmut Goebel ae92caddc5
gnu: python-fixture: Correct inputs.
python-pbr is required only for building.

* gnu/packages/python.scm (python-fixtures) [propagated-inputs] move
  python-pbr-0.11 to [native-inputs].
2016-11-15 22:31:13 +01:00
Hartmut Goebel 6986669012
gnu: python-hdf5: Correct inputs.
According to setup.py python-six is requried at run-time, thus has to be a
propagated input.

* gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to
  [propagated-inputs].
2016-11-15 22:31:12 +01:00
Hartmut Goebel 9820a02858
gnu: python-h5py: Remove needless "python2-variant" property.
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove
  property. (python2-h5py): Don't strip property "strip-python2-variant".
2016-11-15 22:31:12 +01:00
Hartmut Goebel d9a6e221e2
gnu: python-ccm: Update synopsis and description.
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
2016-11-15 22:31:11 +01:00
Hartmut Goebel e165f137d8
gnu: python-ccm: Add missing input python-psutil.
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add
  python-psutil.
2016-11-15 22:31:10 +01:00
Hartmut Goebel ef7451131a
gnu: python-sphinx-rtd-theme: Remove inputs.
This package is a plugin for python-sphinx, it does not require python-sphinx
nor docutils, but is an add-on for python-sphinx and should not be installed
by it's own.

* gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
2016-11-15 22:31:09 +01:00
Hartmut Goebel ce40b38395
gnu: python-pytest-cov: Use upstream options for testing.
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check"
  by one passing the options found in upstream's tox.ini-file
  to "python setup.py check".
2016-11-15 22:31:08 +01:00
Hartmut Goebel b3e8b4bd0f
gnu: scons: Do not use setuptools for building.
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
2016-11-15 22:31:07 +01:00
Hartmut Goebel f2516de2fc
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input.
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
  [native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
2016-11-15 22:31:07 +01:00
Hartmut Goebel 328bb95d35
gnu: Fix python inputs, part 6: some inputs become native-inputs.
This patch handles the inputs which are native-inputs almost always like nose,
sphinx, and pytest.

* gnu/packages/python.scm
  (python-jsonschema, python-numpydoc, python-mccabe, python-mistune,
  python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs]
  change to [native-inputs].
  (python-flake8, tox) Likewise, add a comment.
  (python-scikit-learn, python-numpy)[native-inputs] New element, move
  python-nose here.
  (python2-kombu)[inputs] change to [native-inputs], use python-kombu's
  package-native-inputs.
2016-11-15 22:31:06 +01:00
Hartmut Goebel 482d95918e
gnu: Fix python inputs, part 5: some inputs become propagated-inputs
* gnu/packages/openstack.scm
  (python-os-client-config)[inputs] change to
  [native-inputs]. [propagated-inputs]: New element, move python-appdirs,
  python-pyyaml here.
  (python-git-review)[propagated-inputs]: New element, move python-requests
  here.
* gnu/packages/python.scm
  (python-rpy2)[propagated-inputs]: New element, move python-six here.
  (python-xcffib)[inputs] move python-six to [propagated-inputs].
  (python-flake8)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-pytest)[propagated-inputs]: New element, move python-py here.
  (python-tox)[propagated-inputs]: New element, move all inputs except of
  python-pytest here.
  (python-botocore)[propagated-inputs]: New element, move python-dateutil,
  python-docutils, python-jmespath here.
  (awscli)[propagated-inputs]: New element, move python-colorama,
  python-botocore, python-s3transfer, python-docutils, python-rsa here.
  (python-mako)[propagated-inputs]: New element, move python-markupsafe here.
* gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move
  python-lxml here.
2016-11-15 22:31:05 +01:00
Hartmut Goebel dae73d9b9a
gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs.
This patch contains the changes in python.scm where all [native-inputs]
are changed to [propagated-inputs].

* gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are
  changed to [propagated-inputs].
2016-11-15 22:31:04 +01:00
Hartmut Goebel e7881f3db4
gnu: Fix python inputs, part 2: all inputs become native-inputs.
This patch contains the changes where all [inputs] are changed to
[native-inputs].

* gnu/packages/python.scm (python-pytest, python-fixtures,
  python-testrepository, python-virtualenv): All [inputs] are changed to
  [native-inputs].
* gnu/packages/openstack.scm (python-bandit, python-debtcollector,
  python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context,
  python-oslo.i18n, python-oslo.log, python-oslo.serialization,
  python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
2016-11-15 22:31:03 +01:00
Hartmut Goebel f22efa0152
gnu: Fix python inputs, part 1: all inputs become propagated-inputs.
This patch contains the changes where all [inputs] are changed to
[propagated-inputs]

* gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm,
  python-babel, python-keyring python-pandas, python-tzlocal,
  python-parse-type, python-nose2, python-pytest, python-pytest-mock,
  python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov,
  python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2,
  python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave,
  pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees,
  python-tornado, python2-tornado, python-debian, python-execnet,
  python-pytest-cache, pytest-localserver, python-clint, python-rply,
  python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd,
  python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem,
  python-binaryornot, python2-binaryornot, python-nltk, python-pymongo,
  python-schematics, python-url, python2-url, python-freezegun,
  python-glances, python-graphql-core, python-graphql-relay, python-graphene,
  python-nautilus, python-s3transfer): All [inputs] become
  [propagated-inputs].
* gnu/packages/bioinformatics.scm (python-biopython): Likewise.
* gnu/packages/django.scm (pytest-django): Likewise.
* gnu/packages/mail.scm (python-mailmanclient): Likewise.
* gnu/packages/password-utils.scm (python-bcrypt): Likewise.
* gnu/packages/propbuf.scm (python-protobuf): Likewise.
* gnu/packages/rdf.scm (python-rdflib): Likewise.

SQACH all become propagated
2016-11-15 22:31:03 +01:00
Hartmut Goebel b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15 22:31:02 +01:00
Hartmut Goebel d8013ee221
gnu: Remove needless inputs python-pip and python2-pip.
This is installed together with Python 3 anyway and for our build
of Python 2.

* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
  "python2-pip". (python-reportlab)[properties]: remove "python2-variant".
2016-11-15 22:31:01 +01:00
Hartmut Goebel f210e94432
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b)
This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).

* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
  from a Python 3 package if adding python-setuptools respective
  python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
  been the sole reason for inheriting. Remove now needless [properties]
  "python2-variant" where applicable.
  (python2-lockfile, python2-keyring, python2-dateutil-2,
  python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
  python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
  python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
  python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
  python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
  python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
  python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
  python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
  python2-flask, python2-cookies, python2-responses, python2-future,
  python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
  python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
  python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
  python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
  python2-pytest-pep8, python2-pytest-flakes, python2-glances,
  python2-betamax, python2-file, python2-flask-babel, python2-furl,
  python2-imagesize python2-orderedmultidict, python2-pycodestyle,
  python2-vcversioner, python2-graphql-core, python2-graphql-relay,
  python2-validictory): Remove neesless input "python2-setuptools", don't
  inherit, don't call strip-python2-variant.
  (python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
  python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
  python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
  python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
  python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
  python-execnet, python-pytest-cache, python-wtforms, python-mako,
  python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
  python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
  python-psycopg2, python-vobject, python-flask, python-cookies,
  python-responses, python-future, python-ply, python-wcwidth,
  python-prompt-toolkit, python-jedi, python-requests-oauthlib,
  python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
  python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
  python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
  python-file, python-flask-babel, python-furl, python-imagesize,
  python-orderedmultidict, python-pycodestyle, python-vcversioner,
  python-graphql-core, python-graphql-relay, python-validictory): Remove
  "python2-variant" property.
2016-11-15 22:29:00 +01:00
Hartmut Goebel 5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15 22:28:59 +01:00
Hartmut Goebel 00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15 22:28:38 +01:00
Hartmut Goebel f3b98f4fec
gnu: Remove python-setuptools and python2-setuptools from inputs (part 2)
This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.

* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
  [propagated-inputs] where python-setuptools or python2-setuptools are the
  sole entries. Remove python-setuptools and python2-setuptools listed on a
  line by its own from [inputs], [native-inputs] and [propagated-inputs].

* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
  python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
  crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
  pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
  python-os-testr, python2-os-testr,
  python-stevedore, python2-stevedore,
  python-tempest-lib, python2-tempest-lib,
  python-oslo.log, python2-oslo.log,
  python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
  python-babel, python2-babel,
  python-parse-type,
  python-pytest, python2-pytest,
  python-scripttest, python2-scripttest,
  python-testtools, python2-testtools,
  python-testscenarios, python2-testscenarios,
  python-subunit, python2-subunit,
  python-pbr-0.11,
  python-pbr, python2-pbr,
  python-testrepository, python2-testrepository,
  behave,
  python-wheel, python2-wheel,
  python-requests, python2-requests,
  python-jsonschema, python2-jsonschema,
  python-pyjwt, python2-pyjwt,
  python-virtualenv, python2-virtualenv,
  python-jinja2, python2-jinja2,
  python-joblib, python2-joblib,
  python-sphinx, python2-sphinx,
  python-feedgenerator, python2-feedgenerator,
  python-scikit-image, python2-scikit-image,
  python-redis, python2-redis,
  python2-fastlmm,
  python-numpydoc, python2-numpydoc,
  python-matplotlib, python2-matplotlib,
  python2-pysnptools,
  python-rpy2, python2-rpy2,
  python-pillow, python2-pillow,
  python-pycparser, python2-pycparser,
  python-cffi, python2-cffi,
  python-cairocffi, python2-cairocffi,
  python-drmaa, python2-drmaa,
  python-pathpy, python2-pathpy,
  python-simplegeneric, python2-simplegeneric,
  python-ipython, python2-ipython,
  python-apsw, python2-apsw,
  python-lxml, python2-lxml,
  python-networkx, python2-networkx,
  python-pyzmq, python2-pyzmq,
  python-mccabe, python2-mccabe,
  python-mccabe-0.2.1,
  python-flake8, python2-flake8,
  python-flake8-2.2.4,
  python-mistune, python2-mistune,
  python-ptyprocess, python2-ptyprocess,
  python-llfuse, python2-llfuse,
  python-webob, python2-webob,
  python-xlrd, python2-xlrd,
  python-tables, python2-tables,
  python-pip, python2-pip,
  python-libarchive-c, python2-libarchive-c,
  python-docopt, python2-docopt,
  python-pyrfc3339, python2-pyrfc3339,
  python-configobj, python2-configobj,
  python-clint, python2-clint,
  python-rply, python2-rply,
  python2-rpython,
  python-widgetsnbextension, python2-widgetsnbextension
  jupyter,
  python-jupyter-console, python2-jupyter-console,
  python-hy, python2-hy,
  python-urllib3, python2-urllib3,
  python-rsa, python2-rsa,
  python-tox, python2-tox,
  python2-hypothesis,
  python-paste, python2-paste,
  python-pastescript, python2-pastescript,
  python2-unicodecsv,
  python-pkgconfig, python2-pkgconfig,
  python2-rope,
  python-sqlparse, python2-sqlparse,
  python-gevent, python2-gevent,
  python-tabulate, python2-tabulate,
  python-arrow, python2-arrow,
  python-cleo, python2-cleo,
  python-fake-factory, python2-fake-factory,
  ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
2016-11-15 22:27:31 +01:00
Ricardo Wurmus 86f4e9d76a
gnu: fftw: Build threads library.
* gnu/packages/algebra.scm (fftw)[arguments]: Add "--enable-threads" to
configure flags.
2016-11-15 22:09:25 +01:00
Hartmut Goebel 5d85493284
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b)
This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.

* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
  [native-inputs] and [propagated-inputs] where python-setuptools or
  python2-setuptools are the sole entries. Remove python-setuptools and
  python2-setuptools listed on a line by its own from [inputs],
  [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
  multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
  python-django-simple-math-captcha, python2-django-simple-math-captcha):
  Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
  python-debtcollector, python2-debtcollector,
  python-mox3, python2-mox3,
  python-os-client-config, python2-os-client-config,
  python-oslo.config, python2-oslo.config,
  python-oslo.context, python2-oslo.context,
  python-oslo.i18n, python2-oslo.i18n,
  python-oslo.serialization, python2-oslo.serialization,
  python-oslosphinx, python2-oslosphinx,
  python-oslotest, python2-oslotest,
  python-oslo.utils, python2-oslo.utils,
  python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
2016-11-15 21:58:44 +01:00
Hartmut Goebel f54d6bacbf
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a)
This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.

* gnu/packages/python.scm (python-psutil, python2-psutil,
  python-py-bcrypt, python2-py-bcrypt,
  python-paramiko, python2-paramiko,
  python-httplib2, python2-httplib2,
  python-ecdsa, python2-ecdsa,
  python-ccm, python2-ccm,
  python2-backport-ssl-match-hostname,
  python-pycrypto, python2-pycrypto,
  python-six, python2-six,
  python-dateutil, python2-dateutil,
  python2-mechanize,
  python-extras, python2-extras,
  python-mimeparse, python2-mimeparse,
  python-nose, python2-nose,
  python-nose2, python2-nose2,
  python-unittest2, python2-unittest2,
  python-py, python2-py,
  python-testresources, python2-testresources,
  python-fixtures-0.3.16,
  python-fixtures, python2-fixtures,
  python-coverage, python2-coverage,
  python-discover, python2-discover,
  python-exif-read, python2-exif-read,
  python-pyld, python2-pyld,
  python-certifi, python2-certifi,
  python-click, python2-click,
  python-vcversioner, python2-vcversioner,
  python-unidecode, python2-unidecode,
  python-pyyaml, python2-pyyaml,
  python-markupsafe, python2-markupsafe,
  python-pystache, python2-pystache,
  python-docutils, python2-docutils,
  python-pygments, python2-pygments,
  python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
  python-blinker, python2-blinker,
  python-rq, python2-rq,
  python-numpy, python2-numpy,
  python-distutils-extra, python2-distutils-extra,
  python2-elib.intl,
  python-pillow, python2-pillow,
  python-xcffib, python2-xcffib,
  python-decorator, python2-decorator,
  python-gridmap, python2-gridmap,
  python-pickleshare, python2-pickleshare,
  python-isodate, python2-isodate,
  python-html5lib, python2-html5lib,
  python2-cssutils,
  python-cssselect, python2-cssselect,
  python-netifaces, python2-netifaces,
  python-sympy, python2-sympy,
  python-testlib, python2-testlib,
  python2-xlib,
  python-singledispatch, python2-singledispatch,
  python-backports-abc, python2-backports-abc,
  python-pep8, python2-pep8,
  python-pyflakes, python2-pyflakes,
  python-fonttools, python2-fonttools,
  python-ly,
  python-appdirs, python2-appdirs,
  python-netaddr, python2-netaddr,
  python-wrapt, python2-wrapt,
  python-iso8601, python2-iso8601,
  python-monotonic, python2-monotonic,
  python-prettytable, python2-prettytable,
  python-pyasn1-modules, python2-pyasn1-modules,
  python-idna, python2-idna,
  python-pretend, python2-pretend,
  python-cryptography-vectors, python2-cryptography-vectors,
  python-cryptography, python2-cryptography,
  python-pyopenssl, python2-pyopenssl,
  python-debian, python2-debian,
  python-chardet, python2-chardet,
  python-zope-event, python2-zope-event,
  python-zope-i18nmessageid, python2-zope-i18nmessageid,
  python-websocket-client, python2-websocket-client,
  python-args, python2-args,
  python-astor, python2-astor,
  python2-functools32,
  python2-futures,
  python2-promise,
  python-colorama, python2-colorama,
  python-pluggy, python2-pluggy,
  python-jmespath, python2-jmespath,
  python-botocore, python2-botocore,
  awscli,
  python-pytest-subtesthack, python2-pytest-subtesthack,
  python-pastedeploy, python2-pastedeploy,
  python-magic, python2-magic,
  python2-s3cmd,
  python2-bz2file,
  python-cysignals, python2-cysignals,
  python-py3status,
  python-tblib, python2-tblib,
  python-greenlet, python2-greenlet,
  python-twisted, python2-twisted,
  python-kazoo, python2-kazoo,
  python-pykafka, python2-pykafka,
  python2-jsonrpclib,
  python-chai, python2-chai,
  python-inflection, python2-inflection,
  python-pylev, python2-pylev,
  python-lazy-object-proxy, python2-lazy-object-proxy,
  python-dnspython, python2-dnspython,
  python-email-validator, python2-email-validator,
  python-ukpostcodeparser, python2-ukpostcodeparser,
  python-pyaml, python2-pyaml,
  python-flexmock, python2-flexmock,
  python-orator, python2-orator,
  python-bleach, python2-bleach,
  python-ipywidgets, python2-ipywidgets,
  python-nbconvert, python2-nbconvert,
  python-nbformat, python2-nbformat,
  python-axolotl-curve25519, python-axolotl2-curve25519,
  python-axolotl, python2-axolotl,
  python-nautilus, python-s3transfer): Remove python-setuptools and
  python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
  Remove [inputs], [native-inputs] and [propagated-inputs] where
  python-setuptools or python2-setuptools were the sole entry.
2016-11-15 21:54:58 +01:00
ng0 e1b0b8f5b7
gnu: Fix name for ng0.
* gnu/packages/gnupg.scm: Change name in copyright header.
2016-11-15 14:36:58 -05:00
Tobias Geerinckx-Rice bb6e641588
gnu: Add httptunnel.
* gnu/packages/web.scm (httptunnel): New variable.
2016-11-15 20:27:14 +01:00
Ricardo Wurmus 84590149e6
gnu: hisat: Fix typo.
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory
name in install phase.
2016-11-15 20:21:08 +01:00
Ricardo Wurmus 49c2665f7b
gnu: Add pcb-rnd.
* gnu/packages/engineering.scm (pcb-rnd): New variable.
2016-11-15 20:21:03 +01:00
Hartmut Goebel 15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes.
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
2016-11-15 17:37:48 +01:00
Hartmut Goebel aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2.
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
  configure-flags.
* doc/guix.texi (Python Modules): Document it.
2016-11-15 17:37:40 +01:00
Efraim Flashner b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
2016-11-15 15:25:15 +02:00
Efraim Flashner f5a077b10f
gnu: octave: Update to 4.2.0.
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
Efraim Flashner fccab9931c
gnu: parallel: Update to 20161022.
* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
2016-11-15 11:45:53 +02:00
Efraim Flashner 6312043ca5
gnu: libcdio: Update to 0.94.
* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
2016-11-15 11:13:24 +02:00
Efraim Flashner 3ded2761ab
gnu: gvpe: Update to 3.0.
* gnu/packages/vpn.scm (gvpe): Update to 3.0.
2016-11-15 11:06:15 +02:00
Efraim Flashner 336f830961
gnu: cryptsetup: Update to 1.7.3.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
2016-11-15 09:45:37 +02:00
Efraim Flashner 538fe01934
gnu: python-vcversioner: Update to 2.16.0.0.
* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
2016-11-15 09:45:28 +02:00
Tobias Geerinckx-Rice 1f781865fb
gnu: fish: Update to 2.4.0.
* gnu/packages/shells.scm (fish): Update to 2.4.0.
2016-11-15 01:17:01 +01:00
Tomáš Čech e25c904f2c
services: Require wpa-supplicant-service for connman-service.
* gnu/services/networking.scm (connman-shepherd-service): Add
  wpa-supplicant among list of requirements.
2016-11-15 00:19:23 +01:00
Tomáš Čech 2cccbc2af2
services: Add wpa-supplicant-service.
* gnu/services/networking.scm (wpa-supplicant-service): New procedure.
(wpa-supplicant-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2016-11-15 00:19:17 +01:00
Tomáš Čech 028bf3c0b2
gnu: connman: Use localstatedir outside of store.
* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
2016-11-15 00:13:29 +01:00
Efraim Flashner 8bcd6b91ff
gnu: python-jsonschema: Use 'nosetests'.
* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
2016-11-14 22:49:50 +02:00
Efraim Flashner 571ffdebc3
gnu: accountsservice: Update to 0.6.43.
* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
2016-11-14 21:02:10 +02:00
Ludovic Courtès a4cb821791
gnu: guix-devel: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855.
2016-11-14 15:39:32 +01:00
Ludovic Courtès 198eac2bca
gnu: guix: Really skip all the container tests.
* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
2016-11-14 15:39:32 +01:00
Tobias Geerinckx-Rice 88eaed6174
gnu: libpsl: Update to 0.15.0.
* gnu/packages/web.scm (libpsl): Update to 0.15.0.
2016-11-14 14:12:50 +01:00
Efraim Flashner 7ca37da855
gnu: libinput: Enable GUI event tool.
* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
2016-11-14 13:06:02 +02:00
Efraim Flashner 73bb984ec4
gnu: freedesktop.scm: Reorder modules alphabetically.
* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
2016-11-14 12:15:40 +02:00
Efraim Flashner 8c5cdf5f20
gnu: libinput: Update to 1.5.1.
* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
2016-11-14 12:12:26 +02:00
Efraim Flashner b231b057cd
gnu: wayland-protocols: Update to 1.7.
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
2016-11-14 11:55:01 +02:00
Andy Patterson e66f0dd232
gnu: mpv: Use lua@5.2.
* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
2016-11-14 09:03:55 +00:00
Leo Famulari d9721bcf27
gnu: readline-6.2: Fix CVE-2014-2524.
* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
2016-11-13 17:01:01 -05:00
Leo Famulari 27d7c4e93a
gnu: signify: Update to 20.
* gnu/packages/crypto.scm (signify): Update to 20.
2016-11-13 17:01:01 -05:00
Ludovic Courtès 142530178d
gnu: mailutils: Update to 3.0.
* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2016-11-13 21:12:32 +01:00
Efraim Flashner d81850d438
gnu: guile-ncurses: Update to 2.1.
* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
2016-11-13 22:02:05 +02:00
Tobias Geerinckx-Rice 927d850512
gnu: btrfs-progs: Update to 4.8.3.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice 917239ff99
gnu: tidy: Use ‘modify-phases’.
* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
2016-11-13 13:34:00 +01:00
Tobias Geerinckx-Rice 3b0ac79500
gnu: protobuf: Replace dead Google Code home-page.
* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
2016-11-13 13:33:59 +01:00
Tobias Geerinckx-Rice 3b0f2ba46b
gnu: exfat-utils: Update to 1.2.4.
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
2016-11-13 13:33:59 +01:00
Andy Patterson c25a51d5c6
gnu: clisp: Use readline@6.2.
* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-13 13:00:44 +01:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Efraim Flashner 15abcabe4e
gnu: Add newsbeuter.
* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-12 20:50:48 +02:00
Efraim Flashner c76dab7b36
gnu: Add stfl.
* gnu/packages/ncurses.scm (stfl): New variable.
2016-11-12 20:50:47 +02:00
Alex Sassmannshausen 8883b30165
gnu: Add perl-modern-perl.
* gnu/packages/perl.scm (perl-modern-perl): New variable.
2016-11-12 18:26:28 +01:00
Leo Famulari 5c66314bd9
gnu: libtiff: Fix CVE-2016-9273.
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
2016-11-12 11:05:19 -05:00
Danny Milosavljevic 0a7f17f0e0
gnu: Add python-flask-restplus.
* gnu/packages/python.scm (python-flask-restplus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:17:40 +01:00
Danny Milosavljevic 1e6112d89f
gnu: Add python-rednose.
* gnu/packages/python.scm (python-rednose): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:15:08 +01:00
Danny Milosavljevic e2fca4906e
gnu: Add python-termstyle.
* gnu/packages/python.scm (python-termstyle): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 16:10:23 +01:00
Ludovic Courtès 998f9ac56d
gnu: guix: Update development snapshot.
This is a followup to 166ba5b102.

* gnu/packages/package-management.scm (guix-devel): Update to commit
166ba5b102.
2016-11-12 14:49:04 +01:00
Clément Lassieur 4a38422157
gnu: prosody: fix SSL/TLS.
* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-12 13:04:45 +01:00
Ben Woodcroft 8be62d3f20
gnu: ruby-lumberjack: Update to 1.0.10.
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
2016-11-11 22:56:13 +10:00
Ben Woodcroft e87dfdee86
gnu: ruby-arel: Update to 7.1.4.
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
2016-11-11 22:48:22 +10:00
Ben Woodcroft 16d8d8b289
gnu: ruby-rake-compiler: Update to 1.0.1.
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.
2016-11-11 22:45:38 +10:00
Ben Woodcroft 81d0bd2f44
gnu: ruby-hoe: Update to 3.15.2.
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.
2016-11-11 22:44:03 +10:00
Ben Woodcroft c59491183a
gnu: ruby-rspec-core: Update to 3.5.4.
* gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.
2016-11-11 22:40:39 +10:00
Ben Woodcroft bb4bcb02c2
gnu: bundler: Update to 1.13.6.
* gnu/packages/ruby.scm (bundler): Update to 1.13.6.
2016-11-11 22:38:13 +10:00
Ben Woodcroft e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a.
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions.  Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
2016-11-11 22:15:37 +10:00
Ricardo Wurmus 7c45670b32
gnu: r-org-mm-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus 0cfac6f270
gnu: r-org-dm-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus 83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
2016-11-11 09:08:07 +01:00
Leo Famulari 071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
2016-11-11 01:31:19 -05:00
Leo Famulari 86fc6fe777
gnu: linux-libre: Update to 4.8.7.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
2016-11-11 01:31:15 -05:00
Ludovic Courtès 472fc855bc
gnu: Add guile-aspell.
* gnu/packages/guile.scm (guile-aspell): New variable.
2016-11-11 00:23:16 +01:00
Ludovic Courtès 2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings.
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
2016-11-11 00:23:16 +01:00
Leo Famulari aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}].
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
2016-11-10 18:17:50 -05:00
Ricardo Wurmus b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
Ricardo Wurmus 3f62fa2b81
gnu: inkscape: Use modify-phases syntax.
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
2016-11-10 18:49:48 +01:00
Marius Bakke 65d2f396f7
gnu: vim: Update to 8.0.0073.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
2016-11-10 17:30:08 +00:00
Ludovic Courtès 5970e8e248
container: Pass a list of <file-system> objects as things to mount.
* gnu/build/linux-container.scm (mount-file-systems): 'mounts' is now a
list of <file-system> objects instead of a list of lists ("specs").
Add call to 'file-system->spec' as the argument to 'mount-file-system'.
(run-container, call-with-container): Adjust docstring accordingly.
* gnu/system/file-systems.scm (spec->file-system): New procedure.
* gnu/system/linux-container.scm (container-script)[script]: Call
'spec->file-system' inside gexp.
* guix/scripts/environment.scm (launch-environment/container): Remove
call to 'file-system->spec'.
* tests/containers.scm ("call-with-container, mnt namespace")
("call-with-container, mnt namespace, wrong bind mount"): Pass a list of
<file-system> objects.
2016-11-10 18:01:44 +01:00
Ludovic Courtès 5e7eaccb14
linux-container: Use 'source-module-closure' when generating the script.
* gnu/system/linux-container.scm (container-script)[script]: Use
'source-module-closure' in 'with-imported-modules' form.
2016-11-10 18:01:44 +01:00
Ludovic Courtès 9e4e431e04
gnu: guix: Update development snapshot.
* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c.
2016-11-10 18:01:44 +01:00
Paul Garlick 1c79e0861a
gnu: gmsh: Update to 2.14.1
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
Marius Bakke 1b35fea19f
gnu: milkytracker: Update upstream location.
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.

Reported-by: ng0 <ng0@we.make.ritual.n0.is>
2016-11-10 16:33:57 +00:00
Leo Famulari 8f9c89d13b
gnu: imagemagick: Update to 6.9.6-4.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
2016-11-10 11:33:20 -05:00
Tobias Geerinckx-Rice f34284abcb
gnu: claws-mail: Update to 3.14.1.
* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
2016-11-10 14:30:09 +01:00
Hartmut Goebel 99abcdbd9b
gnu: Add pdfposter.
* gnu/packages/pdf.scm(pdfposter): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel c68e8591d8
gnu: Add python2-pypdf.
* gnu/packages/pdf.scm (python2-pypdf): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel ad5a7d49c3
gnu: Add python-pypdf2.
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
2016-11-10 14:26:04 +01:00
Ludovic Courtès 8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings.
Partly addresses <http://bugs.gnu.org/24703>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
2016-11-09 21:24:44 +01:00
Thomas Danckaert 8bb115e0c6
gnu: Add kdevelop-pg-qt.
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Thomas Danckaert 5a16e1c04e
gnu: Add libkomparediff2.
* gnu/packages/kde.scm (libkomparediff2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Ludovic Courtès 28791c1c8d
gnu: hidapi: Fix 'license'.
* gnu/packages/libusb.scm (hidapi)[license]: Actually call
'non-copyleft'.
2016-11-09 21:24:44 +01:00
Efraim Flashner 65dccb3a86
gnu: Add vifm.
* gnu/packages/vim.scm (vifm): New variable.
2016-11-09 20:56:36 +02:00
Leo Famulari 0b34b58688
gnu: libxslt: Fix CVE-2016-4738.
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
2016-11-09 10:19:49 -05:00
Efraim Flashner d887f420d2
gnu: postgresql: Update to 9.5.5.
* gnu/packages/databases.scm (postgresql): Update to 9.5.5.
[home-page]: Use https.
2016-11-09 11:39:30 +02:00
Efraim Flashner bc332a638b
gnu: mariadb: Update to 10.1.19.
* gnu/packages/databases.scm (mariadb): Update to 10.1.19.
2016-11-09 11:04:36 +02:00
Ludovic Courtès de7da4e5d1
gnu: gnome-calculator: Update to 3.22.2.
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.22.2.
2016-11-09 09:25:18 +01:00
Ludovic Courtès 7894ea6122
gnu: gcc-arm-none-eabi-4.9: Remove non-applicable patch.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9)[patches]: Remove
"gcc-arm-bug-71399.patch" from XGCC's patches.
2016-11-08 23:57:29 +01:00
Ludovic Courtès 946465bbaf
system: Reintroduce 'GUIX_LOCPATH', for compatibility with glibc@2.23.
* gnu/system.scm (operating-system-environment-variables): Re-add
'GUIX_LOCPATH'.  This reverts part of
9f58fe3d1c.
2016-11-08 23:31:27 +01:00
Efraim Flashner e3ec6c806a
gnu: mate-themes: Update to 3.20.9.
* gnu/packages/mate.scm (mate-themes): Update to 3.20.9.
[source]: Update package location.
[inputs]: Remove gtk+-2, add gtk+-3.
[description]: Add note about dual gtk+-2/gtk+-3 support.
2016-11-08 22:53:43 +02:00
Efraim Flashner 27caff1b5d
gnu: mate-menus: Update to 1.16.0.
* gnu/packages/mate.scm (mate-menus): Update to 1.16.0.
[propagated-inputs]: Move glib ...
[inputs]: ... to here.
2016-11-08 22:35:27 +02:00
John Darrington 859e367d07
gnu: Add pam-krb5 service.
* doc/guix.texi (Kerberos Services): New node.
* gnu/services/kerberos.scm: New file.
* gnu/local.mk: Add it.
2016-11-08 21:35:26 +01:00
Efraim Flashner 9927943c30
gnu: mate-desktop: Update to 1.16.1.
* gnu/packages/mate.scm (mate-desktop): Update to 1.16.1.
[arguments]: Build with gtk+-3, enable mpaste.
[propagated-inputs]: Remove gtk+-2, move libxrandr,
startup-notification ...
[inputs]: ... to here.  Add gtk+-3, python-2.
2016-11-08 22:18:07 +02:00
Efraim Flashner b6c5ad8564
gnu: mate-icon-theme: Update to 1.16.0.
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.16.0.
2016-11-08 22:16:54 +02:00
Efraim Flashner 065999807d
gnu: libmateweather: Update to 1.16.1.
* gnu/packages/mate.scm (libmateweather): Update to 1.16.1.

[arguments]: Build with gtk+-3.
[propagated-inputs]: Remove gtk+-2, move gdk-pixbuf ...
[inputs]: ... to here. Add gtk+-3.
2016-11-08 22:16:18 +02:00
Ricardo Wurmus 8ae6040451
gnu: Add faust-2.
* gnu/packages/audio.scm (faust-2): New variable.
2016-11-08 21:00:02 +01:00
Ricardo Wurmus 83c49858b5
gnu: Add LLVM variant with RTTI support.
* gnu/packages/llvm.scm (llvm-with-rtti): New variable.
2016-11-08 20:59:58 +01:00
Marius Bakke f0ad50af8c
gnu: python-tempest-lib: Update to 1.0.0.
* gnu/packages/openstack.scm (python-tempest-lib): Update to 1.0.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:48 +00:00
Marius Bakke 43b53bbbf5
gnu: python-os-testr: Update to 0.8.0.
* gnu/packages/openstack.scm (python-os-testr, python2-os-testr): Update
to 0.8.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:18 +00:00
Marius Bakke eaba9d6670
gnu: python-jsonschema: Correct inputs.
* gnu/packages/python.scm (python-jsonschema)[inputs]: Remove
python-setuptools. Move python-vcversioner to ...
[native-inputs]: ... here.
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Move
python2-functools32 to ...
[propagated-inputs]: ... here.
[native-inputs]: Add python2-setuptools.
2016-11-08 18:22:07 +00:00
Leo Famulari c163a28473
gnu: libgit2: Update to 0.24.3 [fixes CVE-2016-{8568,8569}].
* gnu/packages/version-control.scm (libgit2): Update to 0.24.3.
2016-11-08 12:48:26 -05:00
Marius Bakke 912dcbad86
gnu: python-cryptography, python-cryptography-vectors: Update to 1.5.3.
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.5.3.
[native-inputs]: Add python-pytz. Change python-pytest to python-pytest-2.9.2.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.5.3.
2016-11-08 16:14:15 +00:00
Leo Famulari fca4ff3559
gnu: Add python-pytest-2.9.2.
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-11-08 16:14:04 +00:00
Leo Famulari 667e777b4e
gnu: mupdf: Fix CVE-2016-{7504,7505,7506,7563,7564,9017,9136} in bundled mujs.
* gnu/packages/patches/mupdf-CVE-2016-7504.patch,
gnu/packages/patches/mupdf-CVE-2016-7505.patch
gnu/packages/patches/mupdf-CVE-2016-7506.patch
gnu/packages/patches/mupdf-CVE-2016-7563.patch
gnu/packages/patches/mupdf-CVE-2016-7564.patch
gnu/packages/patches/mupdf-CVE-2016-9017.patch
gnu/packages/patches/mupdf-CVE-2016-9136.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2016-11-08 11:03:14 -05:00
Marius Bakke 81bf2ccbc4
system: Use grub from bootloader configuration.
* gnu/system/grub.scm (gnu): Export grub-configuration-grub.
* guix/scripts/system.scm (perform-action): Use it.
(define-module): Don't import (gnu packages grub).

Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2016-11-08 14:35:05 +00:00
Efraim Flashner 72246dc029
gnu: gcc@4.7: Build with texinfo@5.
* gnu/packages/gcc.scm (gcc@4.7)[native-inputs]: Use texinfo@5 in place
of texinfo@6.
2016-11-08 16:24:29 +02:00
Theodoros Foradis 842a1400a7
gnu: Add plantuml.
* gnu/packages/uml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Roel Janssen <roel@gnu.org>
2016-11-08 14:59:04 +01:00
Leo Famulari 5045d80ff1
gnu: gnupg: Add TODO comment about custom build phase.
* gnu/packages/gnupg.scm (gnupg)[arguments]: Add comment.
2016-11-08 04:07:23 -05:00
Efraim Flashner a00fbe8adf
gnu: keepassx: Update to 2.0.3.
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.3.
[inputs]: Add libxi.
2016-11-07 21:57:00 +02:00
Efraim Flashner 2523691a22
gnu: owncloud-client: Update to 2.2.4.
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.4.
[arguments]: Enable tests, disable two failing tests.
[inputs]: Remove python-wrapper, qt, ruby.  Add qtbase, qtwebkit.
Move perl ...
[native-inputs]: ... to here.  Add cmocka and qttools.
2016-11-07 21:56:47 +02:00
Danny Milosavljevic 6a686b18e0
gnu: python-sqlalchemy-utils: Mention optional dependencies in description.
* gnu/packages/python.scm (python-sqlalchemy-utils,
python2-sqlalchemy-utils)[description]: Mention optional dependencies.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-07 12:49:03 -05:00
Marius Bakke 1581406e23
gnu: Add efibootmgr.
* gnu/packages/linux.scm (efibootmgr): New variable.
2016-11-07 12:12:59 +00:00
Marius Bakke 0d74462a5f
gnu: Add efivar.
* gnu/packages/linux.scm (efivar): New variable.
2016-11-07 12:12:56 +00:00
Ben Woodcroft 06028aed7c
gnu: ruby-tzinfo-data: Update to 1.2016.9.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2016.9.
2016-11-07 21:36:24 +10:00
Ben Woodcroft 17ba688c49
gnu: ruby-sqlite3: Update to 1.3.12.
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.12.
2016-11-07 21:35:31 +10:00
Ben Woodcroft e7d1d472cd
gnu: ruby-shoulda-context: Update to 1.2.2.
* gnu/packages/ruby.scm (ruby-shoulda-context): Update to 1.2.2.
2016-11-07 21:35:07 +10:00
Ben Woodcroft ca0839142e
gnu: ruby-domain-name: Update to 0.5.20161021.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20161021.
2016-11-07 21:34:15 +10:00
Ben Woodcroft 2a2eb07d87
gnu: ruby-http-cookie: Update to 1.0.3.
* gnu/packages/ruby.scm (ruby-http-cookie): Update to 1.0.3.
2016-11-07 21:33:41 +10:00
Ben Woodcroft 420fdfef9a
gnu: ruby-sequel: Update to 4.40.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.40.0.
2016-11-07 21:32:32 +10:00
Ben Woodcroft 3cf7c31720
gnu: diamond: Update to 0.8.26.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.26.
2016-11-07 21:31:09 +10:00
Thomas Danckaert bd9174860c
gnu: texmaker: Use modular qt and qtwebkit.
* gnu/packages/tex.scm (texmaker)[inputs]: Use modular qt and qtwebkit.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
Thomas Danckaert 47e1d280d5
gnu: Add qtwebkit.
* gnu/packages/qt.scm (qtwebkit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-07 10:18:22 +01:00
Efraim Flashner fbc44ef2cd
gnu: nano: Update to 2.7.1.
* gnu/packages/nano.scm (nano): Update to 2.7.1.
[home-page]: Use https.
2016-11-07 07:55:01 +02:00
Mark H Weaver 71e21fb26d
Merge branch 'master' into core-updates 2016-11-07 00:33:16 -05:00
Leo Famulari 14ac8e4865
gnu: jansson: Update to 2.9.
* gnu/packages/web.scm (jansson): Update to 2.9.
[source]: Remove 'jansson-CVE-2016-4425.patch'.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-06 19:50:30 -05:00
Ludovic Courtès 19ac2ba858
gnu: glibc: Add version 2.23.
* gnu/packages/base.scm (glibc-2.23): New variable.
2016-11-07 00:44:56 +01:00
Ludovic Courtès fd68cc2c8b
gnu: ghostscript: Add 'upstream-name' property.
This allows 'guix refresh' to do the right thing.

* gnu/packages/ghostscript.scm (ghostscript)[properties]: New field.
2016-11-06 23:52:32 +01:00
Leo Famulari 2ad0240c56
gnu: acme-client: Update to 0.1.14.
* gnu/packages/tls.scm (acme-client): Update to 0.1.14.
2016-11-06 15:58:22 -05:00
Marius Bakke a95403876e
gnu: vim: Update to 8.0.0069.
* gnu/packages/vim.scm (vim): Update to 8.0.0069.
2016-11-06 20:44:43 +00:00
Efraim Flashner 63d8f08fbf
gnu: qtmultimedia: Remove bundled library.
* gnu/packages/qt.scm (qtmultimedia)[source]: Remove bundled library.
2016-11-06 22:25:11 +02:00
Efraim Flashner c04854da93
gnu: qtimageformats: Remove bundled libraries.
* gnu/packages/qt.scm (qtimagesformats)[source]: Remove bundled 3rd
party libraries.
2016-11-06 22:25:11 +02:00
Danny Milosavljevic 26d07efb79
gnu: python-sqlalchemy-utils: Use python-pytest.
* gnu/packages/python.scm (python-sqlalchemy-utils)[native-inputs]: Add
python-pytest.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:15 +00:00
Danny Milosavljevic c22b4f87c2
gnu: python-sqlalchemy-utils: Propagate existing inputs.
* gnu/packages/python.scm (python-sqlalchemy-utils)[inputs]: Move to ...
[propagated-inputs]: ... here.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic 462bf27157
gnu: Add python-flask-babel.
* gnu/packages/python.scm (python-flask-babel, python2-flask-babel):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic 9dede065ba
gnu: Add python-furl.
* gnu/packages/python.scm (python-furl, python2-furl): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:14 +00:00
Danny Milosavljevic b91912c42a
gnu: Add python-orderedmultidict.
* gnu/packages/python.scm (python-orderedmultidict, python2-orderedmultidict):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
Danny Milosavljevic 4a0933307e
gnu: Add python-pycodestyle.
* gnu/packages/python.scm (python-pycodestyle, python2-pycodestyle):
  New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-06 19:53:13 +00:00
John Darrington 290ad2243c
gnu: Remove comment which is factually incorrect.
* gnu/system/pam.scm: Remove incorrect comment.
2016-11-06 19:56:43 +01:00
Chris Marusich 1e17a2d5f2
install: Extract procedure: install-grub-config.
* gnu/build/install.scm (install-grub-config): New procedure.
(install-grub): Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-06 18:08:53 +01:00
Chris Marusich 3382bfe9ea
system: Avoid using device paths in <menu-entry> device field.
This fixes a regression introduced by
1ef8b72a7f, in which we would incorrectly use a
device path in a label-based grub root search command, e.g. 'search --label
--set /dev/sda4'.

* gnu/system.scm (grub-device): New procedure.
(operating-system-grub.cfg, operating-system-parameters-file): Use it.
(read-boot-parameters): Handle device paths correctly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-06 18:08:46 +01:00
Marius Bakke f4dc22bcd9
gnu: nmap: Update to 7.31.
* gnu/packages/admin.scm (nmap): Update to 7.31.
[arguments]: Add phase 'patch-Makefile' to prevent lua from being built.
2016-11-06 16:17:29 +00:00
Marius Bakke 331ef882ff
gnu: wireshark: Use lua-5.2.
* gnu/packages/networking.scm (wireshark)[inputs]: Change from 'lua' to
'lua-5.2'.
2016-11-06 16:17:27 +00:00
Marius Bakke 6dbf1fec0d
gnu: lua: Update to 5.3.3.
* gnu/packages/patches/lua52-liblua-so.patch: Rename to ...
* gnu/packages/patches/lua-liblua-so.patch: ... this. Add version comment.
* gnu/local.mk (dist_patch_DATA): Adjust patch name.
* gnu/packages/lua.scm (lua): Update to 5.3.3.
[source]: Use https URL. Use new patch name.
[home-page]: Use https URL.
(lua-5.2): New variable.
(lua-5.1)[source]: Use https URL.
2016-11-06 16:17:16 +00:00
ng0 de975de39b
gnu: build: file-system: Change url of LUKS specification.
* gnu/build/file-system.scm: Change url of LUKS specification.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:36 +02:00
ng0 f0badf98d7
gnu: pingus: Update upstream location.
* gnu/packages/games.scm (pingus)[source]: Update source uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:33 +02:00
ng0 73ea83f517
gnu: r-proto: Update project's home-page.
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:21 +02:00
Hartmut Goebel fab959d308
gnu: java-hamcrest-core: Fix build.
Since we now remove the directory "lib" from the source, we need to
create a directory where build.xml searches for .jar-files.

* gnu/packages/java.scm (java-hamcrest-core)[pahases]: New phase
  create-dummy-directories.
2016-11-06 11:49:12 +01:00
Hartmut Goebel e5213cd63b
gnu: java-hamcrest-core: Remove wrong source file-name.
The sources file-name was set to "java-hamcrest-core", while it contains
not only the "core" but all of hamcrest. Further the source archive
already has the correct name.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Remove file-name.
2016-11-06 10:55:08 +01:00
Hartmut Goebel 006728966a
gnu: java-hamcrest-core: Update upstream location.
The checksum changed since the new location's archive contains no
jar-files (except those of external libraries) and line endings are
different.

* gnu/packages/java.scm (java-hamcrest-core)[source]: Update source
  uri and checksum. [snippet]: Remove directory "lib" completely.
2016-11-06 10:42:57 +01:00
Efraim Flashner 937bc2d137
gnu: bullet: Update to 2.85.1.
* gnu/packages/game-development.scm (bullet): Update to 2.85.1.
[source]: Change to new Github url.
[arguments]: Enable tests, build shared libraries.
[inputs]: Add glu, libx11, mesa.
2016-11-06 10:30:18 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Mark H Weaver 7f4658983a
gnu: epiphany: Update to 3.22.1.
* gnu/packages/gnome.scm (epiphany): Update to 3.22.1.
2016-11-06 02:55:52 -05:00
Efraim Flashner 569fc290b3
gnu: ibus: Update to 1.5.14.
* gnu/packages/ibus.scm (ibus): Update to 1.5.14.
[arguments]: Disable emojis.
[inputs]: Add json-glib.
[home-page]: Use project's new home-page.
2016-11-05 23:23:37 +02:00
Efraim Flashner 7acc2a3eb3
gnu: libkate: Update upstream location.
* gnu/packages/xiph.scm (libkate)[source]: Update source uri.
[home-page]: Update project's home-page.
2016-11-05 23:23:36 +02:00
ng0 2c62b31619
gnu: w3m: Fix the commit string.
* gnu/packages/w3m.scm (w3m)[source]: Fix the commit string.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 17:12:24 -04:00
Leo Famulari 683cdbf51b
gnu: python-axolotl-curve25519: Fix license.
* gnu/packages/python.scm (python-axolotl-curve25519,
python2-axolotl-curve25519)[license]: Replace ISC with BSD-3.
2016-11-05 16:34:14 -04:00
Arun Isaac 06ff083754
gnu: Add python-axolotl.
* gnu/packages/python.scm (python-axolotl, python2-axolotl): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:19 -04:00
Arun Isaac 2f6dd9cdef
gnu: Add python-axolotl-curve25519.
* gnu/packages/python.scm (python-axolotl-curve25519,
  python2-axolotl-curve25519): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-05 16:32:15 -04:00
Leo Famulari 9422c98a0a
gnu: python-imagesize: Disable the test suite.
* gnu/packages/python.scm (python-imagesize, python2-imagesize)[arguments]:
Disable the tests.
2016-11-05 14:13:39 -04:00
Leo Famulari 2d125a9b21
gnu: weex: Update to 2.8.2 [fixes CVE-2005-3150].
* gnu/packages/ftp.scm (weex): Update to 2.8.2.
[source]: Use new URL. Remove obsolete 'weex-vacopy.patch'.
[arguments]: Remove custom 'configure' phase and add 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and gnu-gettext.
* gnu/packages/patches/weex-vacopy.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-05 13:31:44 -04:00
Efraim Flashner 268b3802e9
gnu: whois: Update to 5.2.13.
* gnu/packages/networking.scm (whois): Update to 5.2.13.
2016-11-05 17:46:55 +02:00
Efraim Flashner 0cee33ac96
gnu: gst-plugins-bad: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.0.
[inputs]: Remove wayland.
[tests]: Update comment about failing tests.
[home-page]: Use https.
2016-11-05 17:41:39 +02:00
Efraim Flashner 18a9a7ef38
gnu: jasper: Update to 1.900.19.
* gnu/packages/image.scm (jasper): Update to 1.900.19.
[arguments]: Remove custom make-flags.
2016-11-05 17:41:38 +02:00
Efraim Flashner 378a0535e1
gnu: freeipmi: Update to 1.5.5.
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.5.
2016-11-05 17:41:38 +02:00
Efraim Flashner 96451462c5
gnu: python-gst: Update to 1.10.0.
* gnu/packages/gstreamer.scm (python-gst): Update to 1.10.0.
2016-11-05 17:41:38 +02:00
Efraim Flashner 81fc4b20c7
gnu: gst-libav: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 7aa083e581
gnu: gst-plugins-ugly: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 49eddefbf0
gnu: gst-plugins-good: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner 74e6c84444
gnu: gst-plugins-base: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.0.
2016-11-05 17:41:37 +02:00
Efraim Flashner e2a2eeecce
gnu: gstreamer: Update to 1.10.0.
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.0.
2016-11-05 17:41:36 +02:00
ng0 05234973c7
gnu: Add mps-youtube.
* gnu/packages/video.scm (mps-youtube): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
ng0 02f8f804f0
gnu: Add python-pafy.
* gnu/packages/python.scm (python-pafy): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-05 12:27:12 +00:00
Leo Famulari c2f4cab9a0
gnu: libidn: Distinguish from libidn2.
* gnu/packages/libidn.scm (libidn)[description]: Add detail to help distinguish
from libidn2.
2016-11-05 01:12:35 -04:00
Leo Famulari 250a8abc66
gnu: Add libidn2.
* gnu/packages/libidn.scm (libidn2): New variable.
2016-11-05 01:12:31 -04:00
Kei Kebreau 674a0f9558
gnu: w3m: Switch to Debian's actively maintained fork of w3m.
Fixes some security issues seen here:
<http://www.openwall.com/lists/oss-security/2016/11/03/3>

* gnu/packages/w3m.scm (w3m): Switch it.
[source]: Use Debian's git tree. Remove obsolete patches.
[arguments]: Remove an unneeded substitute* function.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch,
gnu/packages/patches/w3m-disable-weak-ciphers.patch,
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch,
gnu/packages/patches/w3m-libgc.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-04 20:06:03 -04:00
Leo Famulari 682bfb8124
gnu: webkitgtk: Update to 2.14.2.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
2016-11-04 19:49:11 -04:00
Ricardo Wurmus c27ae827da
gnu: Add jupyter.
* gnu/packages/python.scm (jupyter): New variable.
2016-11-04 21:23:08 +01:00
Ricardo Wurmus accd5f996e
gnu: python-ipython: Update to 4.0.0.
* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus 8ceebf8fa6
gnu: Add python-jupyter-console.
* gnu/packages/python.scm (python-jupyter-console,
python2-jupyter-console): New variable.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus 4fe2e34409
gnu: Add python-ipywidgets.
* gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New
variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus d55724ed5b
gnu: Add python-widgetsnbextension.
* gnu/packages/python.scm (python-widgetsnbextension,
python2-widgetsnbextension): New variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus a0d62280f5
gnu: Add python-notebook.
* gnu/packages/python.scm (python-notebook, python2-notebook): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus c60898a845
gnu: Add python-nbconvert.
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus 60590a3ae8
gnu: Add python-entrypoints.
* gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New
variables.
2016-11-04 21:23:04 +01:00
Kei Kebreau 08722837b0
gnu: chromium-bsu: Update to 0.9.16.1.
* gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1.
[arguments]: Remove 'set-sdl-paths phase.
[inputs]: Add gnu-gettext.
2016-11-04 11:17:09 -04:00
Ludovic Courtès bd2e1a8cb0
gnu: cross-base: Remove exports of cross compilers.
They were never really needed and caused troubles in the presence of
circular module dependencies as reported by
Danny Milosavljevic <dannym@scratchpost.org> at
<https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html>.

* gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf):
Remove.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use
'cross-gcc' instead of XGCC-XTENSA.
2016-11-04 15:36:00 +01:00
Ludovic Courtès fb77c61422
gnu: Remove '%final-inputs' references at the top level.
Due to circular dependencies, referring to bindings exported by other
modules from the top level is frowned upon.  This patch addresses one of
the remaining cases.

* gnu/packages/base.scm (%final-inputs): New procedure.
* gnu/packages/cross-base.scm: Remove (gnu packages commencement) import.
(cross-gcc): Use the new '%final-inputs'.
* gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import.
(package-with-relocatable-glibc): Use the new '%final-inputs'.
2016-11-04 15:36:00 +01:00
Roel Janssen 8af47ef603
gnu: r-nmf: Use bigmemory.
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
Roel Janssen 59523c4cf5
gnu: Add r-bigmemory.
* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
Roel Janssen 4a83865286
gnu: Add r-synchronicity.
* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
Roel Janssen c6105d69c0
gnu: Add r-bigmemory-sri.
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-04 14:35:04 +01:00
宋文武 1a79d4767a
gnu: xmp: Update to 4.1.0.
* gnu/packages/audio.scm (xmp): Update to 4.1.0.
2016-11-04 21:08:44 +08:00
宋文武 2784fca032
gnu: libxmp: Update to 4.4.1.
* gnu/packages/audio.scm (libxmp): Update to 4.4.1.
2016-11-04 21:08:44 +08:00
Florian Paul Schmidt 18f3d92b39
gnu: Add swh-plugins-lv2.
* gnu/packages/audio.scm (swh-plugins-lv2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-11-04 12:11:06 +01:00
Ricardo Wurmus 55436048d8
gnu: Add python-bleach.
* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.
2016-11-04 11:32:35 +01:00
Ricardo Wurmus 2d321bb2c5
gnu: Add python-nbformat.
* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.
2016-11-04 11:29:16 +01:00
Ricardo Wurmus 8ee62c97f6
gnu: Add python-html5lib-0.9.
* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.
2016-11-04 11:26:34 +01:00
Ricardo Wurmus 5ff6effcc0
gnu: Add python-testpath.
* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.
2016-11-04 11:24:02 +01:00
Ricardo Wurmus ab526102ed
gnu: Add python-ipykernel.
* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.
2016-11-04 11:23:19 +01:00
Ricardo Wurmus 9ff01f2d01
gnu: Add python-jupyter-client.
* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.
2016-11-04 11:22:54 +01:00
Ricardo Wurmus 4263b06fa2
gnu: Add python-jupyter-core.
* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.
2016-11-04 11:21:37 +01:00
Ricardo Wurmus a5ba14811a
gnu: python-traitlets: Update to 4.2.0.
* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
2016-11-04 11:19:22 +01:00
Leo Famulari 8d806cb0e0
gnu: ola: Fix build failure caused by use of deprecated function.
* gnu/packages/patches/ola-readdir-r.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lighting.scm (ola)[source]: Use it.
2016-11-04 01:44:42 -04:00
Marius Bakke 6e1d7aa94e
gnu: Add font-adobe-source-code-pro.
* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
2016-11-03 20:32:04 +00:00
Marius Bakke b4edcd28cf
gnu: Add geteltorito.
* gnu/packages/cdrom.scm (geteltorito): New variable.
2016-11-03 20:31:36 +00:00
Kei Kebreau ccbc575824
gnu: maxima: Update to 5.38.1.
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
Kei Kebreau 043f1535c2
gnu: starfighter: Update to 1.6.
* gnu/packages/games.scm (starfighter): Update to 1.6.
2016-11-03 15:40:17 -04:00
Ricardo Wurmus ed8fbe5e62
gnu: r-rcas: Update to 1.0.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus 16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus c15ae9b008
gnu: r-biocparallel: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus 5b3b2d2f02
gnu: r-limma: Update to 3.30.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus ed3054231d
gnu: r-edger: Update to 3.16.1.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0.
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1.
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0.
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival.
* gnu/packages/statistics.scm (r-survival): New variable.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus ac3265abad
gnu: Add r-htmltable.
* gnu/packages/web.scm (r-htmltable): New variable.
2016-11-03 19:01:44 +01:00
Kei Kebreau b81245ccb3
[PATCH] gnu: Add libjxr.
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
2016-11-03 13:43:23 -04:00
Danny Milosavljevic b054b26a48
gnu: sunxi-tools: Update to 1.4.1.
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags.  Remove 'fix-Makefile'
phase.  Add 'install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 15:58:04 +01:00
Arun Isaac 5d68e9d620
gnu: Add pdf2svg.
* gnu/packages/pdf.scm (pdf2svg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 14:33:50 +01:00
Ludovic Courtès 4c93fe83e8
gnu: mesa: Apply MIPS patch conditionally.
Fixes <http://bugs.gnu.org/24833>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/gl.scm (mesa)[source](patches): Remove.
[native-inputs]: Add conditional "mips-patch" input.
[arguments]: Add conditional 'apply-mips-patch' phase.
2016-11-03 11:24:39 +01:00
ng0 05e3865e07
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].
* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-02 23:16:11 -04:00
Leo Famulari b3cc0dce08
Merge branch 'master' into core-updates 2016-11-02 20:03:35 -04:00
Alex Sassmannshausen e681e347c4
gnu: Add perl-getopt-long.
* gnu/packages/perl.scm (perl-getopt-long): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-02 14:23:24 +00:00
Marius Bakke cbf5889fe5
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.
2016-11-02 12:01:37 +00:00
Mark H Weaver ac1dc6d12f
gnu: linux-libre: Update to 4.8.6.
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.
2016-11-02 07:31:53 -04:00
Mark H Weaver b3097a71c5
gnu: linux-libre@4.4: Update to 4.4.30.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.
2016-11-02 07:29:28 -04:00
Ricardo Wurmus d439aa36ce
gnu: perl-test-simple: Update to 1.302062.
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.
2016-11-02 11:51:46 +01:00
Marius Bakke 24dfc13bfa
gnu: re2: Update to 2016-11-01.
* gnu/packages/regex.scm (re2): Update to 2016-11-01.
2016-11-02 05:34:09 +00:00
Leo Famulari 86c61a6bd1
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.
2016-11-01 21:46:09 -04:00
Leo Famulari e777d07db9
gnu: iproute2: Update to 4.8.0.
* gnu/packages/linux.scm (iproute2): Update to 4.8.0.
[arguments]: Set Bash completion directory in #:make-flags.
2016-11-01 21:46:06 -04:00
David Thompson 2c1d46b257
gnu: love: Update to 0.10.2.
* gnu/packages/game-development.scm (love): Update to 0.10.2.
2016-11-01 21:03:18 -04:00
Ludovic Courtès 21f828e02e
gnu: emacs-debbugs: Update to 0.12.
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.12.
2016-11-01 22:23:48 +01:00
Leo Famulari 3325803b0b
gnu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864].
* gnu/packages/dns.scm (bind): Update to 9.10.4-P4.
2016-11-01 17:03:12 -04:00
Leo Famulari e3e3e488a1
gnu: diffoscope: Update to 62.
* gnu/packages/package-management.scm (diffoscope): Update to 62.
2016-11-01 16:17:12 -04:00
Marius Bakke bac3d6095d
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}].
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-01 14:02:01 -04:00
Marius Bakke b56d9ce304
gnu: xapian: Update to 1.4.1.
* gnu/packages/search.scm (xapian): Update to 1.4.1.
2016-11-01 10:37:19 +00:00
Efraim Flashner 6846f08471
gnu: Correct hackage mirror usage.
* gnu/package/haskell.scm (ghc-data-accessor)[source]: Specify hackage
mirror.
(ghc-data-accessor-transformers)[source]: Same.
(ghc-gnuplot)[source]: Same.
2016-11-01 10:37:18 +02:00
Leo Famulari 40330e555f
gnu: icecat: Fix build with binutils >= 2.26.
* gnu/packages/patches/icecat-binutils.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Use it.
2016-10-31 20:59:40 -04:00
Marius Bakke b3df4d7e57
gnu: Add speech-dispatcher.
* gnu/packages/speech.scm (speech-dispatcher): New variable.
2016-11-01 00:05:22 +00:00
Marius Bakke 0905048ab3
gnu: Add dotconf.
* gnu/packages/textutils.scm (dotconf): New variable.
2016-11-01 00:05:22 +00:00
Ricardo Wurmus 6e9d5d5fba
gnu: librecad: Update to 2.1.3.
* gnu/packages/engineering.scm (librecad): Update to 2.1.3.
2016-10-31 23:10:48 +01:00
Tobias Geerinckx-Rice e6efcd5837
gnu: virt-manager: Fix build by including 'gtk-update-icon-cache'.
* gnu/packages/qemu.scm (virt-manager)[native-inputs]: Add gtk+:bin.
2016-10-31 22:44:30 +01:00
Tobias Geerinckx-Rice 88dfd8b8aa
gnu: cups-minimal: Update to 2.2.1.
* gnu/packages/cups.scm (cups-minimal): Update to 2.2.1.
[source]: Use new https://github.com download URL.
2016-10-31 22:33:51 +01:00
Leo Famulari 65a3bdf7eb
gnu: borg: Run the tests with python-pytest-2.9.2.
* gnu/packages/backup.scm (borg)[native-inputs]: Use python-pytest-2.9.2.
2016-10-31 17:02:38 -04:00
Leo Famulari 0bc6ef2a87
gnu: Add python-pytest-2.9.2.
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-10-31 17:02:34 -04:00
Manolis Ragkousis d76181a7a3
gnu: cross-libc: Use the correct libc.
* gnu/packages/cross-base.scm (cross-libc): Use cross-libc-for-target
to determine the correct libc to use.
2016-10-31 19:42:26 +02:00
Leo Famulari fdc45ab1b0
gnu: imagemagick: Update to 6.9.6-3.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-3.
2016-10-31 13:31:32 -04:00
Federico Beffa 1a86b671ce
gnu: Add ghc-gnuplot.
* gnu/packages/haskell.scm (ghc-gnuplot): New variable.
2016-10-31 16:13:38 +01:00
Federico Beffa a5cbef03ba
gnu: Add ghc-utility-ht.
* gnu/packages/haskell.scm (ghc-utility-ht): New variable.
2016-10-31 16:13:35 +01:00
Federico Beffa 81a1191922
gnu: Add ghc-data-access-transformers.
* gnu/packages/haskell.scm (ghc-data-access-transformers): New variable.
2016-10-31 16:13:33 +01:00
Federico Beffa 505e0150dc
gnu: Add ghc-data-accessor.
* gnu/packages/haskell.scm (ghc-data-accessor): New variable.
2016-10-31 16:13:31 +01:00
Federico Beffa 6af886f492
gnu: geiser-next: Re-introduce it.
* gnu/packages/emacs.scm (geiser-next): Re-introduce it.
2016-10-31 16:13:27 +01:00
Federico Beffa 149c652378
gnu: Add chez-scmutils.
* gnu/packages/chez.scm (chez-scmutils): New variable.
2016-10-31 16:13:25 +01:00
Federico Beffa 53b9684e33
gnu: Add chez-mit.
* gnu/packages/chez.scm (chez-mit): New variable.
2016-10-31 16:13:23 +01:00
Federico Beffa 08fc0d68f0
gnu: haskell-mode: Update to 16.1.
* gnu/packages/emacs.scm (haskell-mode): Update to 16.1.
  [inputs]: Add 'emacs-el-search' and 'emacs-stream'.
  [propagated-inputs]: Add 'emacs-dash'.
  [arguments]: Add modules. Adapt 'pre-build' and 'install' phases.
2016-10-31 16:13:21 +01:00
Federico Beffa 0fc06f3eba
gnu: Add emacs-el-search.
* gnu/packages/emacs.scm (emacs-el-search): New variable.
2016-10-31 16:13:17 +01:00
Federico Beffa 8f50634ba4
gnu: Add emacs-stream.
* gnu/packages/emacs.scm (emacs-stream): New varaible.
2016-10-31 16:13:09 +01:00
Ludovic Courtès 5bde4503ee
gnu: ld-wrapper-boot0: Work around strict evaluation of (%current-system).
Reported by Mark H Weaver <mhw@netris.org>
Partly fixes <http://bugs.gnu.org/24832>.

'ld-wrapper-boot0' was evaluating strictly instead of lazily, leading to
invalid system types.

* gnu/packages/base.scm (make-ld-wrapper): Turn #:target into a
one-argument procedure.  Honor it.
* gnu/packages/commencement.scm (ld-wrapper-boot0): Fix 'name' argument
to 'make-ld-wrapper'.  Make #:target argument a procedure.
* gnu/packages/cross-base.scm (cross-gcc): Adjust #:target argument.
2016-10-31 16:06:30 +01:00
Marius Bakke c907beec92
gnu: fio: Update to 2.15.
* gnu/packages/benchmark.scm (fio): Update to 2.15.
2016-10-31 11:15:08 +00:00
Marius Bakke 58fdab1d13
gnu: Add ccid.
* gnu/packages/security-token.scm (ccid): New variable.
2016-10-31 10:10:26 +00:00
Ricardo Wurmus 6d1b3bf55b
gnu: openocd: Correct license.
* gnu/packages/embedded.scm (openocd)[license]: Change to gpl2+.
2016-10-31 10:41:54 +01:00
Leo Famulari 77e9c9931e
gnu: shotwell: Fix build by including 'gtk-update-icon-cache'.
* gnu/packages/gnome.scm (shotwell)[native-inputs]: Add gtk+:bin.
2016-10-31 01:28:52 -04:00
Leo Famulari 205f0107bb
Merge branch 'master' into core-updates 2016-10-30 19:19:21 -04:00
Leo Famulari b89cbf5832
gnu: libtiff: Fix CVE-2016-5652.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff-fixed)[source]: Use it.
2016-10-30 19:07:49 -04:00
Ludovic Courtès a7db8540a7
gnu: guix: Always depend on the development dependencies.
Suggested by Chris Marusich <cmmarusich@gmail.com> at
<https://lists.gnu.org/archive/html/guix-devel/2016-10/msg00425.html>.

* gnu/packages/package-management.scm (guix-0.11.0)[native-inputs]: Add
Autoconf, Automake, Gettext, Texinfo, Graphviz, and Help2man.
(guix-devel)[native-inputs]: Remove.
2016-10-30 23:14:27 +01:00
Ludovic Courtès ffba9d598e
gnu: emacs-debbugs: Update to 0.11.
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.11.
2016-10-30 22:59:46 +01:00
Chris Marusich 1ef8b72a7f
system: Record store file system info in each generation.
* gnu/system.scm (<boot-parameters>)[store-device, store-mount-point]:
New fields.
(read-boot-parameters): Initialize them.
(operating-system-grub.cfg): Likewise.  Remove STORE-FS argument from
call to 'grub-configuration-file'.
(operating-system-parameters-file): Add 'store' element in
'boot-parameters'.
* gnu/system/grub.scm (strip-mount-point): Replace 'store-fs' parameter
by 'mount-point'; adjust accordingly.  Adjust callers.
(<menu-entry>)[device, device-mount-point]: New fields.
(eye-candy): Replace 'root-fs' parameter by 'store-device'; add
'store-mount-point'.  Use keyword arguments for 'system' and 'port'.
(grub-root-search): Remove 'root-fs' by 'device' and adjust
accordingly.
(grub-configuration-file): Remove 'store-fs' parameter.  Adjust
accordingly.
* guix/scripts/system.scm (previous-grub-entries): Initialize 'device'
and 'device-mount-point' fields from PARAMS.
* doc/guix.texi (GRUB Configuration): Document 'device' and
'device-mount-point'.  Explain that 'linux' can be prefixed by a GRUB
device name.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-10-30 22:59:46 +01:00
Arun Isaac b7f3cf2c9a
gnu: Add nethogs.
* gnu/packages/networking.scm (nethogs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:38:40 -04:00
Danny Milosavljevic 45b4f12727
gnu: Add python-imagesize.
* gnu/packages/python.scm (python-imagesize, python2-imagesize): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:31:11 -04:00
Ricardo Wurmus 67a3b2dd4e
gnu: python-pyusb: Prettify library substitution.
* gnu/packages/libusb.scm (python-pyusb)[arguments]: Use srfi-1 to make
the "fix-libusb-reference" phase clearer.
2016-10-30 18:57:18 +01:00
Ricardo Wurmus a8dd960ac0
gnu: python-joblib: Disable failing tests.
* gnu/packages/python.scm (python-joblib)[arguments]: Add phase to
disable failing tests.
2016-10-30 18:54:41 +01:00
Ricardo Wurmus f34ef3317e
gnu: python-joblib: Update to 0.10.3.
* gnu/packages/python.scm (python-joblib): Update to 0.10.3.
[native-inputs]: Add python-sphinx, python-docutils, python-numpydoc.
2016-10-30 17:04:24 +01:00
Efraim Flashner bae678296a
gnu: python-waf: Download over https.
* gnu/packages/python.scm (python-waf)[source]: Use https.
2016-10-30 10:43:53 +02:00
Efraim Flashner 31c6bfed58
gnu: samba: Update to 4.5.1.
* gnu/packages/samba.scm (samba): Update to 4.5.1.
2016-10-30 10:41:31 +02:00
Leo Famulari e3c1311a5d
gnu: git: Update to 2.10.2.
* gnu/packages/version-control.scm (git): Update to 2.10.2.
2016-10-29 23:02:14 -04:00
Leo Famulari 593dfdc33b
Merge branch 'master' into core-updates 2016-10-29 22:16:47 -04:00
Leo Famulari 59f1298558
gnu: python-nltk: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-nltk to fail.

* gnu/packages/python.scm (python-nltk, python2-nltk)[arguments]:
Disable the tests.
2016-10-29 22:16:19 -04:00
Leo Famulari 2ddbfa8c06
gnu: python-pyquery: Add inputs for test suite.
* gnu/packages/python.scm (python-pyquery,
python2-pyquery)[native-inputs]: Add python-webob and python-webtest.
2016-10-29 22:16:19 -04:00
宋文武 ad967bf08d
gnu: dico: Fix test failure.
* gnu/packages/dico.scm (dico)[source]: Add 'snippet' and 'modules'.
2016-10-30 09:53:11 +08:00
Leo Famulari 326f8285b3
gnu: python-graphql-core: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-graph-ql to fail.

* gnu/packages/python.scm (python-graphql-core,
python2-graphql-core)[arguments]: Disable the tests.
2016-10-29 21:50:58 -04:00
Leo Famulari 062c7e43ed
Merge branch 'master' into core-updates 2016-10-29 21:44:44 -04:00
Leo Famulari 269d9172ff
gnu: python-pika: Add inputs for test suite.
* gnu/packages/python.scm (python-pika, python2-pika)[native-inputs]: Add
python-pyev, python-tornado.
2016-10-29 21:43:24 -04:00
Leo Famulari 329b4b3b69
gnu: Add python-pyev.
* gnu/packages/python.scm (python-pyev, python2-pyev): New variables.
2016-10-29 21:43:24 -04:00
Leo Famulari bae1871059
gnu: python-prompt-toolkit: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-prompt-toolkit to fail.

* gnu/packages/python.scm (python-prompt-toolkit,
python2-prompt-toolkit)[arguments]: Disable the tests.
2016-10-29 21:43:24 -04:00
Leo Famulari 10797a0ae0
gnu: python-publicsuffix2: Disable the test suite.
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-publicsuffix2 to fail.

* gnu/packages/python.scm (python-publicsuffix2, python2-publicsuffix2)
[arguments]: Disable the tests.
2016-10-29 21:43:23 -04:00
Leo Famulari a2eab4223d
gnu: python-pyechonest: Remove package.
* gnu/packages/music.scm (python-pyechonest): Remove variable.
2016-10-29 21:43:14 -04:00
Theodoros Foradis 5b83b7b854
gnu: Add openocd.
* gnu/packages/embedded.scm (openocd): New variable.
* gnu/packages/patches/openocd-nrf52.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
2016-10-30 02:34:26 +01:00
David Craven 91ba693586
gnu: Add jimtcl.
* gnu/packages/embedded.scm (jimtcl): New variable.
2016-10-30 02:33:58 +01:00
David Craven e5e45c067d
gnu: Add libjaylink.
* gnu/packages/embedded.scm (libjaylink): New variable.
2016-10-30 02:33:53 +01:00
Theodoros Foradis 3d74f12e63
gnu: Add hidapi.
* gnu/packages/libusb.scm (hidapi): New variable.
2016-10-30 02:03:04 +02:00
Theodoros Foradis 94f36a4f5e
gnu: Add gdb-arm-none-eabi.
* gnu/packages/embedded.scm (gdb-arm-none-eabi): New variable.
2016-10-30 02:02:46 +02:00
Tobias Geerinckx-Rice f4fe6c991c
gnu: cups-filters: Remove duplicate ‘--with-gs-path=’ flag.
* gnu/packages/cups.scm (cups-filters)[arguments]: Remove redundant
‘--with-gs-path=’ from #:configure-flags, left over from a botched merge.
2016-10-30 01:15:53 +02:00