Commit Graph

32243 Commits

Author SHA1 Message Date
Ricardo Wurmus 482bdf2522
gnu: cowsay: Use INVOKE.
* gnu/packages/games.scm (cowsay)[arguments]: Use INVOKE in build phases.
2019-01-26 14:57:29 +01:00
Ricardo Wurmus 4665d8c943
gnu: python-django: Use INVOKE.
* gnu/packages/django.scm (python-django)[arguments]: Use INVOKE.
2019-01-26 14:56:42 +01:00
Ricardo Wurmus 7f46dcc49c
gnu: ding: Use INVOKE.
* gnu/packages/dictionaries.scm (ding)[arguments]: Use INVOKE.
2019-01-26 14:47:48 +01:00
Ricardo Wurmus c9e7515970
gnu: uthash: Use INVOKE.
* gnu/packages/datastructures.scm (uthash)[arguments]: Use INVOKE.
2019-01-26 14:46:40 +01:00
Ricardo Wurmus d1293d426d
gnu: uthash: Fetch sources via git.
* gnu/packages/datastructures.scm (uthash)[source]: Fetch source code via git.
2019-01-26 14:46:05 +01:00
Ricardo Wurmus 8f43bdd9fb
gnu: make-u-boot-package: Use INVOKE.
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Use INVOKE in
"configure" phase.
2019-01-26 14:44:32 +01:00
Ricardo Wurmus 92b344dd05
gnu: libksysguard: Use INVOKE.
* gnu/packages/kde.scm (libksysguard)[arguments]: Use INVOKE in "check" phase.
2019-01-26 14:42:06 +01:00
Ricardo Wurmus f3b9a85829
gnu: kdelibs4support: Use INVOKE.
* gnu/packages/kde-frameworks.scm (kdelibs4support)[arguments]: Use INVOKE in
"check" phase.
2019-01-26 14:38:28 +01:00
Ricardo Wurmus 0071676a09
gnu: baloo: Use INVOKE.
* gnu/packages/kde-frameworks.scm (baloo)[arguments]: Use INVOKE in "check"
phase.
2019-01-26 14:28:36 +01:00
Ricardo Wurmus 43bb3ac47a
gnu: knotifications: Use INVOKE.
* gnu/packages/kde-frameworks.scm (knotifications)[arguments]: Use INVOKE in
"check" phase.
2019-01-26 13:18:53 +01:00
Ricardo Wurmus 9f5fd3015b
gnu: kauth: Use INVOKE.
* gnu/packages/kde-frameworks.scm (kauth)[arguments]: Use INVOKE in "check"
phase.
2019-01-26 13:18:19 +01:00
Ricardo Wurmus 93a1a3c544
gnu: solid: Use INVOKE.
* gnu/packages/kde-frameworks.scm (solid)[arguments]: Use INVOKE in "check"
phase.
2019-01-26 13:17:48 +01:00
Ricardo Wurmus 76cf631463
gnu: networkmanager-qt: Use INVOKE.
* gnu/packages/kde-frameworks.scm (networkmanager-qt)[arguments]: Use INVOKE
in "check" phase.
2019-01-26 13:11:07 +01:00
Ricardo Wurmus e7ea534d55
gnu: modemmanager-qt: Use INVOKE.
* gnu/packages/kde-frameworks.scm (modemmanager-qt)[arguments]: Use INVOKE in
"check" phase.
2019-01-26 13:10:29 +01:00
Ricardo Wurmus 29afd8d96c
gnu: kdbusaddons: Use INVOKE.
* gnu/packages/kde-frameworks.scm (kdbusaddons)[arguments]: Use INVOKE in
check phase.
2019-01-26 13:05:09 +01:00
Ricardo Wurmus 19d8f047c4
gnu: kcoreaddons: Disable broken test.
* gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Disable
benchNotifyWatcher test because it installs too many inotify watches and fails
with ENOSPC.
2019-01-26 12:13:37 +01:00
Leo Famulari c6bc0fc3a5
gnu: Go: Update to 1.11.5 [fixes CVE-2019-6486].
* gnu/packages/golang.scm (go-1.11): Update to 1.11.5.
[arguments]: Add a 'tarbomb-workaround' phase and adapt the 'chdir' phase for
the tarbomb.
2019-01-25 19:24:59 -05:00
Nicolas Goaziou 8204ec8dbe
gnu: musescore: Update to 3.0.1.
* gnu/packages/music.scm (musescore): Update to 3.0.1.
2019-01-26 00:51:56 +01:00
Ludovic Courtès 008883561f
gnu: guix: Remove 'guix-devel' variable.
* gnu/packages/package-management.scm (guix-devel): Remove.
2019-01-26 00:06:55 +01:00
Ricardo Wurmus fdb0b40b0e
gnu: pepr: Use PYPI-URI.
* gnu/packages/bioinformatics.scm (pepr)[source]: Use PYPI-URI.
2019-01-25 23:27:25 +01:00
Ricardo Wurmus 4cd7c58cf1
gnu: python2-warpedlmm: Use PYPI-URI.
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[source]: Use PYPI-URI.
2019-01-25 23:26:50 +01:00
Ricardo Wurmus 99d1744611
gnu: attic: Use PYPI-URI.
* gnu/packages/backup.scm (attic)[source]: Use PYPI-URI.
2019-01-25 23:21:20 +01:00
Ricardo Wurmus 4267aa75a3
gnu: graphios: Use PYPI-URI.
* gnu/packages/admin.scm (graphios)[source]: Use PYPI-URI.
2019-01-25 23:20:17 +01:00
Ricardo Wurmus aeec4a8fc1
gnu: python-sqlalchemy: Use PYPI-URI.
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
2019-01-25 23:18:55 +01:00
Ricardo Wurmus 7d4dae6a8d
gnu: python-pyaudio: Use PYPI-URI.
* gnu/packages/audio.scm (python-pyaudio)[source]: Use PYPI-URI.
2019-01-25 23:17:39 +01:00
Ricardo Wurmus 723f332551
gnu: femtolisp: Use INVOKE.
* gnu/packages/scheme.scm (femtolisp)[arguments]: Remove "bootstrap" phase;
use INVOKE and return #T unconditionally.
2019-01-25 23:11:21 +01:00
Christopher Baines dd7bc92afc
gnu: linkchecker: Fix most test failures.
Add a patch to skip more tests that require the network. Along with some other
changes, this gets all but of one of the tests passing.

The remaining test is broken due to a problem with the Python package in Guix,
which is fixed by [1] which is currently on the core-updates branch. This
patch doesn't work on core-updates due to python2-miniboa not being present.

1: d453b0e11d

* gnu/packages/python.scm (linkchecker)[source]: Add patch.
[native-inputs]: Add more inputs required for the tests.
[arguments]: Enable the tests, move the 'check phase after 'install. Test
using the installed software, and use py.test.
2019-01-25 22:00:05 +00:00
Eric Bavier 7e309e8a8d
gnu: dealii-openmpi: Setup MPI for tests.
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
2019-01-25 13:10:05 -06:00
Eric Bavier 6161141e91
superlu-dist: Upgrade to 6.1.0.
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0.  Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]:   Replace pt-scotch with pt-scotch32 to match integer
sizes.  Add "parmetis" input, from pt-scotch32.  Move lapack to ...
[inputs]: ...here.  Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags.  Add
'set-c++-standard' and 'omp-setup' phases.  Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
2019-01-25 13:10:05 -06:00
Eric Bavier fd3733432b
scotch: Upgrade to 6.0.6.
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase.  Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
2019-01-25 13:10:05 -06:00
Eric Bavier a6b9ebc2fc
gnu: Add Combinatorial BLAS.
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
2019-01-25 13:09:47 -06:00
Nicolas Goaziou 1faf0a0459
gnu: Add stepmania.
* gnu/packages/games.scm (stepmania):
* gnu/packages/video.scm (ffmpeg-for-stepmania): New variables.
2019-01-25 18:08:21 +01:00
Ricardo Wurmus a64676e088
Merge branch 'master' into staging 2019-01-25 15:40:25 +01:00
Ricardo Wurmus 81cf0174b5
gnu: kcoreaddons: Fix broken test.
* gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Add build phase
"fix-broken-test".
2019-01-25 15:37:23 +01:00
Ricardo Wurmus fd007bebdd
gnu: infiniband-diags: Remove custom bootstrap phase.
* gnu/packages/fabric-management.scm (infiniband-diags)[arguments]: Remove
"autotools" phase.
2019-01-25 15:20:53 +01:00
Ricardo Wurmus 02d38bd3a2
Merge branch 'master' into staging 2019-01-25 15:20:25 +01:00
Ricardo Wurmus 776248419f
gnu: gpgme: Update to 1.12.0.
* gnu/packages/gnupg.scm (gpgme): Update to 1.12.0.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus 1d7b8a2452
gnu: gpgme: Add patch to fix qgpgme tests.
* gnu/packages/gnupg.scm (gpgme)[source]: Add upstream patch.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus a8416e6951
gnu: pcb-rnd: Use INVOKE.
* gnu/packages/engineering.scm (pcb-rnd)[arguments]: Use INVOKE.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus 5cb9754cf4
gnu: proplib: Use INVOKE.
* gnu/packages/embedded.scm (proplib)[arguments]: Use INVOKE.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus 78854b3849
gnu: jimtcl: Use INVOKE.
* gnu/packages/embedded.scm (jimtcl)[arguments]: Use INVOKE.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus 3af2708881
gnu: greenisland: Use INVOKE.
* gnu/packages/display-managers.scm (greenisland)[arguments]: Use INVOKE in
check phase.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus 3692cffed4
gnu: assword: Use INVOKE.
* gnu/packages/password-utils.scm (assword)[arguments]: Use INVOKE.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus c9a65d5c37
gnu: python-oslosphinx: Use INVOKE.
* gnu/packages/openstack.scm (python-oslosphinx)[arguments]: Use INVOKE.
2019-01-25 15:17:47 +01:00
Ricardo Wurmus c8780a1038
gnu: python-reno: Use INVOKE.
* gnu/packages/openstack.scm (python-reno)[arguments]: Use INVOKE.
[native-inputs]: Replace "git" with "git-minimal".
2019-01-25 15:17:47 +01:00
Gabriel Hondet 4ad7d037ad
gnu: Add ghc-libmpd.
* gnu/packages/haskell.scm (ghc-libmpd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-25 14:06:38 +01:00
Ricardo Wurmus c6e33df90f
gnu: python-pyopenssl: Update to 19.0.0.
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 19.0.0.
[arguments]: Use INVOKE.
2019-01-25 14:02:04 +01:00
Ricardo Wurmus 39df4d1992
gnu: python2-pyqt-4: Use INVOKE.
* gnu/packages/qt.scm (python2-pyqt-4)[arguments]: Use INVOKE.
2019-01-25 13:59:53 +01:00
Ricardo Wurmus 41173df9f8
gnu: qwt: Use INVOKE.
* gnu/packages/qt.scm (qwt)[arguments]: Use INVOKE.
2019-01-25 13:53:04 +01:00
Ricardo Wurmus 5b8484635f
gnu: ldb: Use INVOKE.
* gnu/packages/samba.scm (ldb)[arguments]: Use INVOKE.
2019-01-25 13:44:13 +01:00
Ricardo Wurmus ed0d6ed9a6
gnu: tevent: Use INVOKE.
* gnu/packages/samba.scm (tevent)[arguments]: Use INVOKE.
2019-01-25 13:42:58 +01:00
Ricardo Wurmus d83c52c6bb
gnu: talloc/static: Use INVOKE.
* gnu/packages/samba.scm (talloc/static)[arguments]: Use INVOKE in the build
phase.
2019-01-25 13:39:12 +01:00
Ricardo Wurmus ed5900890e
gnu: tre: Use INVOKE.
* gnu/packages/regex.scm (tre)[arguments]: Use INVOKE.
2019-01-25 13:37:36 +01:00
Ricardo Wurmus 4255818d1c
gnu: python-rdflib: Use PYPI-URI.
* gnu/packages/rdf.scm (python-rdflib)[source]: Use PYPI-URI.
[arguments]: Use INVOKE in commented build phase.
2019-01-25 13:36:14 +01:00
Ricardo Wurmus 48b11025b7
gnu: ocaml-utop: Use INVOKE.
* gnu/packages/ocaml.scm (ocaml-utop)[arguments]: Use INVOKE.
2019-01-25 13:32:41 +01:00
Ricardo Wurmus c6aaa7bed6
gnu: ocaml-zed: Use INVOKE.
* gnu/packages/ocaml.scm (ocaml-zed)[arguments]: Use INVOKE in build phases.
2019-01-25 13:32:04 +01:00
Ricardo Wurmus 04daa1ed72
gnu: ocaml-zarith: Use INVOKE.
* gnu/packages/ocaml.scm (ocaml-zarith)[arguments]: Use INVOKE.
2019-01-25 13:31:29 +01:00
Ricardo Wurmus 2c0234e78e
gnu: camlp4-4.02: Use INVOKE.
* gnu/packages/ocaml.scm (camlp4-4.02)[arguments]: Use INVOKE in build phases.
2019-01-25 13:26:24 +01:00
Ricardo Wurmus fa5d6e4c6f
gnu: ocaml-4.01: Use INVOKE.
* gnu/packages/ocaml.scm (ocaml-4.01)[arguments]: Use INVOKE in build phases.
2019-01-25 13:23:27 +01:00
Ricardo Wurmus bb29e855da
gnu: ocaml-4.02: Use INVOKE.
* gnu/packages/ocaml.scm (ocaml-4.02)[arguments]: Use INVOKE in build phases.
2019-01-25 13:22:34 +01:00
Ricardo Wurmus 20fe9728c4
gnu: tomsfastmath: Use INVOKE.
* gnu/packages/multiprecision.scm (tomsfastmath)[arguments]: Use INVOKE in
"check" phase.
2019-01-25 13:21:20 +01:00
Ricardo Wurmus 6542b2db5d
gnu: freetalk: Remove custom bootstrap phase.
* gnu/packages/messaging.scm (freetalk)[arguments]: Remove "autogen" phase.
2019-01-25 13:21:20 +01:00
Ricardo Wurmus 3fa013af78
gnu: perl-net-psyc: Update to 1.3.
* gnu/packages/messaging.scm (perl-net-psyc): Update to 1.3.
[native-inputs]: Add unzip.
[arguments]: Use INVOKE in build phase.
2019-01-25 13:21:20 +01:00
Ricardo Wurmus b11af07a29
gnu: dino: Update to 0.0-4.8e14ac6.
* gnu/packages/messaging.scm (dino): Update to 0.0-4.8e14ac6.
[arguments]: Use INVOKE in build phases.
[inputs]: Add qrencode; replace sqlite with sqlite-with-column-metadata.
2019-01-25 13:21:20 +01:00
Ricardo Wurmus e6a24cd08b
gnu: bitlbee-discord: Do not run autogen.sh in custom autogen phase.
* gnu/packages/messaging.scm (bitlbee-discord)[arguments]: Rename "autogen"
phase to "patch-autogen"; don't invoke "autogen.sh" script as it is invoked in
the "bootstrap" phase; return #T from "patch-autogen" phase.
2019-01-25 13:21:20 +01:00
Ricardo Wurmus bea06837a3
gnu: bitlbee: Use INVOKE.
* gnu/packages/messaging.scm (bitlbee)[arguments]: Use INVOKE.
2019-01-25 13:21:20 +01:00
Ricardo Wurmus 7d416066cd
gnu: ccl: Unconditionally return #T from build phases.
* gnu/packages/lisp.scm (ccl)[arguments]: Use INVOKE and return #T from build
phases.
2019-01-25 13:21:20 +01:00
Ricardo Wurmus 4c523c4535
gnu: python-lirc: Update to 1.2.1-2.c28708b.
* gnu/packages/lirc.scm (python-lirc, python2-lirc): Update to
1.2.1-2.c28708b.
[arguments]: Use INVOKE.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus 9a425d68d4
gnu: python-pygpgme: Use INVOKE.
* gnu/packages/gnupg.scm (python-pygpgme)[arguments]: Use INVOKE.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus cba8ba8b0d
gnu: brdf-explorer: Unconditionally return #T from build phases.
* gnu/packages/graphics.scm (brdf-explorer)[arguments]: Use INVOKE and return #T.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus ec7245f0db
gnu: ncftp: Use INVOKE.
* gnu/packages/ftp.scm (ncftp)[arguments]: Use INVOKE.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus 15dc8ed5f4
gnu: libxdg-basedir: Don't run autogen.sh manually.
* gnu/packages/freedesktop.scm (libxdg-basedir)[arguments]: Rename "autogen"
phase to "patch-autogen"; remove invocation of "autogen.sh" script as it will
be executed in the "bootstrap" phase.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus fbc70c97c6
gnu: entr: Update to 4.1.
* gnu/packages/entr.scm (entr): Update to 4.1.
[arguments]: Use INVOKE.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus 7492af9be7
gnu: coq-interval: Use INVOKE.
* gnu/packages/coq.scm (coq-interval)[arguments]: Use INVOKE.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus e09e83880f
gnu: coq-coquelicot: Use INVOKE.
* gnu/packages/coq.scm (coq-coquelicot)[arguments]: Use INVOKE.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus 1530b17aa1
gnu: imb: Use INVOKE.
* gnu/packages/benchmark.scm (imb)[arguments]: Use INVOKE.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus 843ce5b419
gnu: synergy: Update to 1.10.1.
* gnu/packages/synergy.scm (synergy): Update to 1.10.1.
[source]: Fetch from git.
[arguments]: Remove "unpack-aux-src", custom "check" phase, custom "install"
phase.
[inputs]: Add avahi and qtbase.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus 0ad0eceed4
gnu: antiword: Use INVOKE.
* gnu/packages/textutils.scm (antiword)[arguments]: Use INVOKE in install phase.
2019-01-25 13:21:19 +01:00
Ricardo Wurmus 90621eff7c
gnu: uucp: Use INVOKE.
* gnu/packages/uucp.scm (uucp)[arguments]: Use INVOKE.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus aa0c73e7aa
gnu: wicd: Use INVOKE.
* gnu/packages/wicd.scm (wicd)[arguments]: Use INVOKE.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus b5e70d921b
gnu: awesome: Use INVOKE.
* gnu/packages/wm.scm (awesome)[arguments]: Return #T from check phase.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus 215ccb997a
gnu: xfconf: Use INVOKE.
* gnu/packages/xfce.scm (xfconf)[arguments]: Unconditionally return #T from
check phase.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus 35faa00686
gnu: libnl: Unconditionally return #T from build phases.
* gnu/packages/linux.scm (libnl)[arguments]: Use INVOKE and unconditionally
return #T from all build phases.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus 492ee4f83b
gnu: coq-mathcomp: Use INVOKE.
* gnu/packages/coq.scm (coq-mathcomp)[arguments]: Unconditionally return #T
from build phases.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus ace73a93cd
gnu: coq-gappa: Use INVOKE.
* gnu/packages/coq.scm (coq-gappa)[arguments]: Unconditionally return #T from
build phases by using INVOKE.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus a48d6acc23
gnu: proof-general: Use INVOKE.
* gnu/packages/coq.scm (proof-general)[arguments]: Use INVOKE in build phases.
2019-01-25 13:21:18 +01:00
Ricardo Wurmus 8543ccf87b
gnu: eschalot: Use INVOKE.
* gnu/packages/crypto.scm (eschalot)[arguments]: Unconditionally return #T
from check phase.
2019-01-25 13:21:18 +01:00
Brett Gilio e60b3e14a1
gnu: ansible: Update to 2.7.6.
* gnu/packages/admin.scm (ansible): Update to 2.7.6.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-01-25 14:09:05 +05:30
Kei Kebreau ea32c94698
gnu: emacspeak: Update to 49.0.
* gnu/packages/emacs.scm (emacspeak): Update to 49.0.
[arguments]: In the 'install' phase, fix the launch script substitution.
2019-01-24 23:57:32 -05:00
Ricardo Wurmus 5c1c1716f5
gnu: cmst: Use INVOKE.
* gnu/packages/connman.scm (cmst)[arguments]: Unconditionally return #T from
build phases.
2019-01-24 23:10:25 +01:00
Ricardo Wurmus e99b47729a
gnu: sloccount: Use INVOKE.
* gnu/packages/code.scm (sloccount)[arguments]: Use INVOKE and unconditionally
return #T from build phases.
2019-01-24 23:08:09 +01:00
Ricardo Wurmus c28bf42f2a
gnu: axoloti-patcher: Use INVOKE.
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
2019-01-24 23:07:10 +01:00
Ricardo Wurmus 1ae04a2acc
gnu: axoloti-runtime: Use INVOKE.
* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Use INVOKE and return
  #T from build phases unconditionally.
2019-01-24 23:06:33 +01:00
Ricardo Wurmus 6e59d91af1
gnu: clamav: Unconditionally return #T from build phase.
* gnu/packages/antivirus.scm (clamav)[arguments]: Use INVOKE.
2019-01-24 21:18:11 +01:00
Ricardo Wurmus bdd914af00
gnu: anthy: Unconditionally return #T from check phase.
* gnu/packages/anthy.scm (anthy)[arguments]: Use INVOKE.
2019-01-24 21:18:11 +01:00
Ricardo Wurmus 562a077683
gnu: git-repo: Unconditionally return #T from "check" phase.
* gnu/packages/android.scm (git-repo)[arguments]: Use INVOKE.
2019-01-24 21:18:11 +01:00
Ricardo Wurmus 50233d9570
gnu: flint: Unconditionally return #T from build phases.
* gnu/packages/algebra.scm (flint)[arguments]: Use INVOKE in "configure"
phases.
2019-01-24 21:18:11 +01:00
Kei Kebreau f1618a0f2f
gnu: milkytracker: Add RtMidi and zziplib support.
* gnu/packages/music.scm (milkytracker)[inputs]: Add rtmidi and zziplib.
2019-01-24 12:30:45 -05:00
Kei Kebreau acfb735787
gnu: cdogs-sdl: Update to 0.6.9.
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.9.
2019-01-24 10:30:42 -05:00
Ricardo Wurmus 67f39dd514
gnu: pari-gp: Address TeX errors.
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Replace texlive-tiny with
texlive-union of texlive-fonts-amsfonts and texlive-latex-amsfonts.
[arguments]: Use INVOKE in configure phase.
2019-01-24 13:46:39 +01:00
Ricardo Wurmus fe2bfabe8b
gnu: texlive-fonts-amsfonts: Build more fonts.
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[arguments]: Convert afm files
to tfm; also build missing tfm files via fontinst.
[native-inputs]: Replace texlive-fonts-cm, texlive-metafont-base, and
texlive-bin with a texlive-union of texlive-tex-fontinst-base,
texlive-fonts-cm, and texlive-metafont-base; add amsfonts-plain, amsfonts-map,
and amsfonts-afm.
2019-01-24 13:46:39 +01:00
Ricardo Wurmus 513fff4c04
gnu: Add texlive-tex-fontinst-base.
* gnu/packages/tex.scm (texlive-tex-fontinst-base): New variable.
2019-01-24 13:46:39 +01:00
Ricardo Wurmus bae65dc45f
gnu: texlive-latex-fancyvrb: Build fvrb-ex.
* gnu/packages/tex.scm (texlive-latex-fancyvrb)[arguments]: Supply
tex-format.
2019-01-24 13:46:39 +01:00
Ricardo Wurmus 26a0506104
gnu: texlive-fonts-cm: Build bitmap fonts at 600dpi.
* gnu/packages/tex.scm (texlive-fonts-cm)[arguments]: Build pk files and
install them.
2019-01-24 13:46:39 +01:00
Ricardo Wurmus 6858ade2e5
gnu: texlive-latex-base: Put fewer paths on TEXINPUTS.
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Use double slash for
recursive directory search instead of FIND-FILES.
2019-01-24 13:46:39 +01:00
Ricardo Wurmus e2f47efee6
gnu: catimg: Simplify.
* gnu/packages/image-viewers.scm (catimg)[arguments]: Rename custom
"configure" phase to "patch-convert"; remove custom "build" phase; move
"install-script" phase after "install"; simplify phases.
2019-01-24 13:46:38 +01:00
Rutger Helling d39a54ff72
gnu: wine: Hard-code vulkan loader.
* gnu/packages/wine.scm (wine)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
* gnu/packages/wine.scm (wine-minimal)[arguments]: Don't inherit phases. Add
'patch-dlopen-paths phase.
2019-01-24 11:01:50 +01:00
Rutger Helling e3b1d4ea6e
gnu: wine: Add vkd3d support.
* gnu/packages/wine.scm (wine)[inputs]: Add vkd3d.
* gnu/packages/wine.scm (wine-staging)[inputs]: Remove vkd3d, inherit from
wine instead.
2019-01-24 09:36:00 +01:00
Rutger Helling dcf6df43ab
gnu: vkd3d: Use wine-minimal.
* gnu/packages/vulkan.scm (vkd3d): Use wine-minimal instead of wine.
2019-01-24 09:36:00 +01:00
Rutger Helling a5466f38c1
gnu: Add wine-minimal.
* gnu/packages/wine.scm (wine-minimal): New variable.
2019-01-24 09:35:59 +01:00
Leo Famulari af83d59ed5
gnu: certbot, python-acme: Update to 0.30.0.
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.30.0.
2019-01-24 01:45:17 -05:00
Maxim Cournoyer ae283c184a
gnu: gnucash-docs: Fix source URI.
The source URI was renamed from "gnucash-docs-3.4-1.tar.gz" to
"gnucash-docs-3.4a.tar.gz".  The content is identical since the hash hasn't
changed.

* gnu/packages/gnucash.scm (gnucash-docs)[source]: Update URI to match
  upstream change.
2019-01-23 23:09:40 -05:00
Mark H Weaver 5ccf3dd0a1
gnu: linux-libre@4.14: Update to 4.14.95.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.95.
(%linux-libre-4.14-hash): Update hash.
2019-01-23 21:51:21 -05:00
Mark H Weaver 02493dfa13
gnu: linux-libre@4.9: Update to 4.9.152.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.152.
2019-01-23 21:50:35 -05:00
Mark H Weaver ff0b73028c
gnu: linux-libre: Make CRYPTO_CRC32C a built-in on arm64.
Fixes <https://bugs.gnu.org/34162>
Reported by Vagrant Cascadian <vagrant@debian.org>

Note that CRYPTO_CRC32C was already a built-in in our default
configurations for other systems.

* gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.19-arm64.conf
(CONFIG_CRYPTO_CRC32C): Change from 'm' to 'y'.
2019-01-23 21:32:14 -05:00
Gabriel Hondet ea7fa78a74
gnu: Add ghc-c2hs.
* gnu/packages/haskell.scm (ghc-c2hs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-23 23:35:12 +01:00
Arne Babenhauserheide 5bbb04f9d1
gnu: Add emacs-xwidgets.
* gnu/packages/emacs.scm (emacs-xwidgets): new variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-23 23:35:12 +01:00
Gabriel Hondet 1d209d06ed
gnu: Add ocaml-craml.
* gnu/packages/ocaml.scm (ocaml-craml): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-23 21:51:14 +01:00
Gabriel Hondet ca53346dd5
gnu: ocaml-cmdliner: Update to 1.0.2.
* gnu/packages/ocaml.scm (ocaml-cmdliner): Update to 1.0.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-23 21:51:09 +01:00
Gabriel Hondet cdcbccd17c
gnu: ocaml-fmt: Update to 0.8.5.
* gnu/packages/ocaml.scm (ocaml-fmt): Update to 0.8.5.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-23 21:50:56 +01:00
Gabriel Hondet f0dece30b4
gnu: ocaml-uchar: Update to 0.0.2.
* gnu/packages/ocaml.scm (ocaml-uchar): Update to 0.0.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-23 21:50:48 +01:00
Ricardo Wurmus 5d3f16e438
gnu: geeqie: Use GTK+ 3.
* gnu/packages/image-viewers.scm (geeqie)[inputs]: Replace gtk+-2 with gtk+.
2019-01-23 21:42:48 +01:00
Ricardo Wurmus 027f97b13f
gnu: geeqie: Remove custom bootstrap phase.
* gnu/packages/image-viewers.scm (geeqie)[arguments]: Remove invocation of
autogen.sh script; rename "autogen" phase to "pre-bootstrap".
2019-01-23 21:40:42 +01:00
Ricardo Wurmus f67cb8eb8c
gnu: cdrtools: Remove custom build and install phases.
* gnu/packages/cdrom.scm (cdrtools)[arguments]: Add make-flags; remove custom
"build" and "install" phases.
2019-01-23 21:34:16 +01:00
Ricardo Wurmus 77e61e25c2
gnu: python2-scientific: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-scientific)[arguments]: Unconditionally
return #T from "build" phase.
2019-01-23 18:39:56 +01:00
Ricardo Wurmus ac599a0999
gnu: python-flasgger: Use INVOKE.
* gnu/packages/python-xyz.scm (python-flasgger)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:39:42 +01:00
Ricardo Wurmus 204ad455ec
gnu: python2-larch: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-larch)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:39:22 +01:00
Ricardo Wurmus cbeee88181
gnu: python2-ttystatus: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-ttystatus)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:39:07 +01:00
Ricardo Wurmus 6c826d3278
gnu: python2-cliapp: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-cliapp)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:38:44 +01:00
Ricardo Wurmus f987ac307b
gnu: python2-ruamel.ordereddict: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-ruamel.ordereddict)[arguments]:
Unconditionally return #T from "check" phase.
2019-01-23 18:38:29 +01:00
Ricardo Wurmus ee2bb94432
gnu: python-pbkdf2: Use INVOKE.
* gnu/packages/python-xyz.scm (python-pbkdf2)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:38:13 +01:00
Ricardo Wurmus 831080a69b
gnu: python-termstyle: Use INVOKE.
* gnu/packages/python-xyz.scm (python-termstyle)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:37:59 +01:00
Ricardo Wurmus 6568bd5df2
gnu: python-validictory: Use INVOKE.
* gnu/packages/python-xyz.scm (python-validictory)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:37:42 +01:00
Ricardo Wurmus c988afda6f
gnu: python-colorspacious: Use INVOKE.
* gnu/packages/python-xyz.scm (python-colorspacious)[arguments]:
Unconditionally return #T from "check" phase.
2019-01-23 18:37:19 +01:00
Ricardo Wurmus 4fc898dad9
gnu: python-numpy-documentation: Use INVOKE.
* gnu/packages/python-xyz.scm (python-numpy-documentation)[arguments]:
Use INVOKE instead of SYSTEM*.
2019-01-23 18:32:27 +01:00
Ricardo Wurmus 38ec0f6adc
gnu: python-spectra: Use INVOKE.
* gnu/packages/python-xyz.scm (python-spectra)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:26:25 +01:00
Maxim Cournoyer d79e0b3a03
gnu: emacs-elpy: Update to 1.28.0.
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.28.0.
2019-01-23 12:20:21 -05:00
Maxim Cournoyer 40bd0aa37b
gnu: python-jedi: Update to 0.13.2.
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.13.2.
2019-01-23 12:20:21 -05:00
Ricardo Wurmus dfafc29bcf
gnu: python2-pystache: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-pystache)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:16:49 +01:00
Ricardo Wurmus 8d46679951
gnu: python-jsonschema: Use INVOKE.
* gnu/packages/python-xyz.scm (python-jsonschema)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:14:22 +01:00
Ricardo Wurmus 93e7b2099b
gnu: python-netcdf4: Update to 1.4.2.
* gnu/packages/python-xyz.scm (python-netcdf4): Update to 1.4.2.
[arguments]: Remove custom "check" phase; add "configure-locations" phase.
[propagated-inputs]: Add python-cftime.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus d362b11d2a
gnu: Add python-cftime.
* gnu/packages/python-xyz.scm (python-cftime): New variable.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus e253b94dc6
gnu: Add python-coveralls.
* gnu/packages/python-check.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 8b89dedc37
gnu: Add python-sh.
* gnu/packages/python-xyz.scm (python-sh): New variable.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 21ccc01d4c
gnu: python-odfpy: Use INVOKE.
* gnu/packages/python-xyz.scm (python-odfpy)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 49ff882740
gnu: python-faker: Use INVOKE.
* gnu/packages/python-xyz.scm (python-faker)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus e59dd3415d
gnu: python-rarfile: Use INVOKE.
* gnu/packages/python-xyz.scm (python-rarfile)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 40b8c4e34d
gnu: python2-ipaddr: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-ipaddr)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 35d79d6103
gnu: python-tables: Use INVOKE.
* gnu/packages/python-xyz.scm (python-tables)[arguments]: Unconditionally
return #T from "check" and "build" phases.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 45fd0081ec
gnu: python-xlrd: Use INVOKE.
* gnu/packages/python-xyz.scm (python-xlrd)[arguments]: Unconditionally return
 #T from "check" phase.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 2d7db19226
gnu: python-cram: Use INVOKE.
* gnu/packages/python-xyz.scm (python-cram)[arguments]: Unconditionally return
 #T from "check" phase.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 7904d6fa2c
gnu: python-ptyprocess: Use INVOKE.
* gnu/packages/python-xyz.scm (python-ptyprocess)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:13:30 +01:00
Ricardo Wurmus 4f0a089479
gnu: python-flake8-polyfill: Use INVOKE.
* gnu/packages/python-xyz.scm (python-flake8-polyfill)[arguments]:
Unconditionally return #T form "check" phase.
2019-01-23 18:13:29 +01:00
Ricardo Wurmus 4a4a7d9ad6
gnu: python2-backports-shutil-get-terminal-size: Use INVOKE.
* gnu/packages/python-xyz.scm (python2-backports-shutil-get-terminal-size)
[arguments]: Unconditionally return #T from "check" phase.
2019-01-23 18:13:29 +01:00
Ricardo Wurmus 5d7a6f1cea
gnu: python-mpmath: Use INVOKE.
* gnu/packages/python-xyz.scm (python-mpmath)[arguments]: Unconditionally
return #T in "check" phase.
2019-01-23 18:13:29 +01:00
Ricardo Wurmus dff0197e60
gnu: python-beautifulsoup4: Use INVOKE.
* gnu/packages/python-xyz.scm (python-beautifulsoup4)[arguments]:
Unconditionally return #T from "check" phase.
2019-01-23 18:13:29 +01:00
Ricardo Wurmus 95b707fb46
gnu: python-honcho: Use INVOKE.
* gnu/packages/python-xyz.scm (python-honcho)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:13:29 +01:00
Ricardo Wurmus acb75c0328
gnu: python-pycparser: Use INVOKE.
* gnu/packages/python-xyz.scm (python-pycparser)[arguments]: Unconditionally
return #T from "check" phase.
2019-01-23 18:13:29 +01:00
Ricardo Wurmus d1c4f329d1
gnu: python-orderedmultidict: Return #T from build phase.
* gnu/packages/python-xyz.scm (python-orderedmultidict)[arguments]:
Unconditionally return #T from phase "fix-tests".
2019-01-23 18:13:29 +01:00
Ricardo Wurmus 5d1ade85c4
gnu: python2-pysnptools: Update to 0.3.13.
* gnu/packages/python-xyz.scm (python2-pysnptools): Update to 0.3.13.
[native-inputs]: Remove unzip; add python2-cython.
[arguments]: Disable tests.
2019-01-23 18:13:29 +01:00
Ricardo Wurmus 1b66989bed
gnu: python2-pysnptools: Use better home page.
* gnu/packages/python-xyz.scm (python2-pysnptools)[home-page]: Use better home
page.
2019-01-23 18:13:29 +01:00
Maxim Cournoyer f0caf7607d
gnu: Add emacs-magit-gerrit.
* gnu/packages/emacs-xyz.scm (emacs-magit-gerrit): New variable.
2019-01-23 07:54:44 -05:00
Maxim Cournoyer 60bfefb615
gnu: gnucash: Add information about how to use the documentation.
It was not obvious that another application, Yelp, needed to be installed to
so that opening the help of GnuCash from within the application would work.

Fixes issue #33960 (see: https://issues.guix.info/issue/33960).

* gnu/packages/gnucash.scm (gnucash)[description]: Explain how to enable the
  documentation.
2019-01-23 07:46:28 -05:00
Maxim Cournoyer 2a67ea73c3
gnu: gnucash: Update to 3.4.
* gnu/packages/gnucash.scm (gnucash): Update to 3.4.
[outputs]: Add debug.
(gnucash-docs): Update to 3.4-1.
[native-inputs]: Update docbook-xml to version 4.5 and drop older versions.
2019-01-23 07:46:28 -05:00
Maxim Cournoyer a2e7e95663
gnu: gnucash: Disable the stress-options-test using a phase.
The qof test is also reinstated; it was failing because the needed locales
were not installed.

* gnu/packages/patches/gnucash-disable-failing-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/gnucash.scm (gnucash)[patches]: Remove it.
[phases]{disable-stress-options-test}: Implement it using SUBSTITUTES*.
{install-locales}: New phase.
2019-01-23 07:46:27 -05:00
Maxim Cournoyer 7c8ea31ac9
gnu: gnucash: Convert price-quotes-perl patch to a phase.
* gnu/packages/patches/gnucash-price-quotes-perl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu/packages/gnucash.scm (gnucash)[patches]: Remove it.
[phases]{fix-finance-quote-check}: Implement it using SUBSTITUTES*.
2019-01-23 07:46:27 -05:00
Maxim Cournoyer 20626f62c4
gnu: gnucash: Fix indentation.
* gnu/packages/gnucash.scm (gnucash): Fix indentation.
2019-01-23 07:46:27 -05:00
Ricardo Wurmus 672489622b
gnu: Add emacs-simple-mpc.
* gnu/packages/emacs-xyz.scm (emacs-simple-mpc): New variable.
2019-01-23 12:27:40 +01:00
Ricardo Wurmus a38fa63b4b
gnu: guile-wisp: Simplify arguments and fix indentation.
* gnu/packages/guile.scm (guile-wisp)[arguments]: Slightly simplify and fix
indentation.
2019-01-23 12:27:40 +01:00
Ricardo Wurmus ef841dca91
gnu: guile-wisp: Update home page.
* gnu/packages/guile.scm (guile-wisp)[home-page]: Use HTTPS.
2019-01-23 12:27:40 +01:00
Ricardo Wurmus 2d5598c1d7
gnu: guile-wisp: Update to 0.9.9.
* gnu/packages/guile.scm (guile-wisp): Update to 0.9.9.
2019-01-23 12:27:40 +01:00
Ricardo Wurmus 2b965485e2
Merge branch 'master' into staging 2019-01-23 12:08:54 +01:00
Ricardo Wurmus 5aaef5c5de
Merge branch 'master' into staging 2019-01-23 12:08:27 +01:00
Efraim Flashner b2c08402f5
gnu: emacs-emms-mode-line-cycle: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-emms-mode-line-cycle)[source]: Use
'git-fetch'.
2019-01-23 10:51:21 +02:00
Efraim Flashner ae848798a6
gnu: emacs-ghub: Update to 3.2.0.
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.2.0.
[propagated-inputs]: Add emacs-dash, emacs-graphql, emacs-treepy.
[synopsis, description]: Update.
(emacs-magit, emacs-magit-svn)[propagated-inputs]: Add emacs-graphql,
emacs-treepy.
[arguments]: Update accordingly.
2019-01-23 10:51:21 +02:00
Efraim Flashner d49d053428
gnu: emacs-magit: Update to 2.13.1.
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 2.13.1.
[source]: Use 'git-fetch'.
2019-01-23 10:51:21 +02:00
Efraim Flashner f5350a07dc
gnu: emacs-haskell-mode: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-haskell-mode)[source]: Use 'git-fetch'.
2019-01-23 10:51:21 +02:00
Efraim Flashner 0c662875b9
gnu: emacs-ghub: Don't use unstable-tarball.
* gnu/packages/emacs-xyz.scm (emacs-ghub)[source]: Use 'git-fetch'.
2019-01-23 10:51:20 +02:00
Efraim Flashner 427530b96d
gnu: emacs-magit-svn: Update to 2.2.1.
* gnu/packages/emacs-xyz.scm (emacs-magit-svn): Update to 2.2.1.
2019-01-23 10:51:20 +02:00
Efraim Flashner ff1d5478a1
gnu: emacs-magit-svn: Add missing inputs.
* gnu/packages/emacs-xyz.scm (emacs-magit-svn)[propagated-inputs]: Add
emacs-ghub, emacs-magit-popup.
[arguments]: Adjust accordingly.
2019-01-23 10:51:20 +02:00
Efraim Flashner daa82371b8
gnu: eamcs-magit-svm: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-magit-svn)[source]: Use 'git-fetch'.
[native-inputs]: Remove tar, gzip.
[arguments]: Adjust code accordingly.
2019-01-23 10:51:20 +02:00
Efraim Flashner 8b9fab8f76
gnu: emacs-git-modes: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-git-mode)[source]: Use 'git-fetch'.
2019-01-23 10:51:20 +02:00
Rutger Helling 07725a0a66
gnu: wine-staging: Update to 4.0.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0.
* gnu/packages/wine.scm (wine-staging): Update to 4.0.
2019-01-23 09:14:29 +01:00
Rutger Helling 0e41f95eec
gnu: wine: Update to 4.0.
* gnu/packages/wine.scm (wine): Update to 4.0.
[inputs]: Add sdl2 and vulkan-loader.
* gnu/packages/wine.scm (wine-staging)[inputs]: Remove sdl2 and vulkan-loader,
inherit from wine instead.
2019-01-23 09:04:45 +01:00
Mark H Weaver 6a6799b27a
gnu: linux-libre: Update to 4.20.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.4.
(%linux-libre-hash): Update hash.
2019-01-23 01:16:17 -05:00
Mark H Weaver 5123e57fc9
gnu: linux-libre@4.19: Update to 4.19.17.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.17.
(%linux-libre-4.19-hash): Update hash.
2019-01-23 01:15:20 -05:00
Carl Dong 38f77be464
gnu: mariadb: Disable sporadically failing tests.
* guix/packages/databases.scm: Disable sporadically failing tests.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>
2019-01-22 21:42:52 -06:00
Maxim Cournoyer 82328c0105
gnu: emacs-ert-runner: Update to latest upstream commit.
The latest tag is many years old, and the latest upstream branch includes
important fixes such as displaying correctly the backtrace upon encountering
errors (see:
4b6e6cb81f).

* gnu/packages/emacs-xyz.scm (emacs-ert-runner): Update to the latest upstream
commit.
[origin]: Use GIT-FETCH instead of URL-FETCH to mitigate against GitHub's
dynamically generated tarballs.
2019-01-22 21:20:04 -05:00
Ludovic Courtès 2d04076332
gnu: Remove duplicate record fields.
* gnu/packages/haskell.scm (ghc-case-insensitive): Remove duplicate
'inputs' field.
* gnu/packages/python-xyz.scm (python2-pysnptools): Remove duplicate
'native-inputs' field.
* gnu/tests/install.scm (%separate-home-os): Remove duplicate 'type'
field.
2019-01-22 23:04:05 +01:00
Danny Milosavljevic d1dfcc7c1b
gnu: Add fakeroot.
* gnu/packages/linux.scm (fakeroot): New variable.
2019-01-22 16:38:19 +01:00
Danny Milosavljevic c63d7b7975
gnu: Add genext2fs.
* gnu/packages/linux.scm (genext2fs): New variable.
2019-01-22 16:12:08 +01:00
Carl Dong 0a59cc6e85
gnu: bitcoin-core: Update to 0.17.1.
* gnu/packages/finances.scm (bitcoin-core): Update to 0.17.1.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-01-22 15:26:24 +01:00
Danny Milosavljevic 0e9600cbbd
gnu: bitcoin-core: End phase in #t.
* gnu/packages/finance.scm (bitcoin-core)[arguments]<#:phases>[set-home]:
End phase in #t.
2019-01-22 15:26:17 +01:00
Carl Dong 99629e5a11
gnu: bitcoin-core: Make bitcoin-qt deterministic.
* gnu/packages/finance.scm (bitcoin-core)[arguments]<#:phases>
[make-qt-deterministic]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-01-22 15:26:03 +01:00
Ricardo Wurmus 0845999a5e
gnu: Add glibc-locales variants for older versions of glibc.
* gnu/packages/base.scm (make-glibc-locales, make-glibc-utf8-locales): New
procedures.
(glibc-locales): Express in terms of make-glibc-locales.
(glibc-utf8-locales): Express in terms of make-glibc-utf8-locales.
(glibc-locales-2.27, glibc-utf8-locales-2.27): New variables.
2019-01-22 15:10:59 +01:00
Ricardo Wurmus 11627ca550
gnu: paps: Update to 0.7.0-1.37e6ca1.
* gnu/packages/pdf.scm (paps): Update to 0.7.0-1.37e6ca1.
[source]: Fetch from git.
[arguments]: Add phase "do-not-run-configure-script-during-bootstrap".
[native-inputs]: Add autoconf, automake, gettext-minimal, glib:bin and
intltool.
[home-page]: Point to Github.
2019-01-22 15:09:40 +01:00
Efraim Flashner 354d27e5dc
gnu: python-websocket-client: Update to 0.54.0.
* gnu/packages/python-web.scm (python-websocket-client): Update to 0.54.0.
[properties]: New field.
(python2-websocket-client)[native-inputs]: Add
python2-backport-ssl-match-hostname.
2019-01-22 12:59:14 +02:00
Efraim Flashner e2227b6ada
gnu: python-isort: Update to 4.3.4.
* gnu/packages/python-xyz.scm (python-isort): Update to 4.3.4.
[source]: Use 'git-fetch'.
[properties]: New field.
(python2-isort)[native-inputs]: Add python2-futures.
2019-01-22 11:47:44 +02:00
Efraim Flashner dddd7a75fa
gnu: python-wrapt: Update to 1.11.1.
* gnu/packages/python-xyz.scm (python-wrapt): Update to 1.11.1.
2019-01-22 11:47:43 +02:00
Efraim Flashner 2782bd51f4
gnu: python-virtualenv: Update to 16.1.0.
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 16.1.0.
[arguments]: Move custom 'check phase to custom 'disable-failing-test
phase and re-instate standard 'check phase.
2019-01-22 11:47:40 +02:00
Taylan Kammer db58e326e5
gnu: guile-bytestructures: Update to 1.0.5.
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.5.
2019-01-22 02:18:13 +01:00
Ludovic Courtès f896abc71f
gnu: emacs-nix-mode: Move to emacs-xyz.scm.
This removes emacs-xyz.scm from the closure of (gnu packages base).

* gnu/packages/package-management.scm (emacs-nix-mode): Move back to...
* gnu/packages/emacs-xyz.scm (emacs-nix-mode): ... here.  New variable.
2019-01-21 23:10:07 +01:00
Pierre Neidhardt 6185732390
gnu: fortune-mod: Skip failing tests.
* gnu/packages/games.scm (fortune-mod)[arguments]: Skip failing tests.
2019-01-21 23:06:19 +01:00
Pierre Neidhardt f528588a9f
gnu: mediainfo: Update to 18.12.
* gnu/packages/video.scm (mediainfo): Update to 18.12.
[arguments]: Remove manual autogen.sh.
2019-01-21 22:42:48 +01:00
Pierre Neidhardt c0588f98c5
gnu: libzen: Fix sha256 and remove manual autogen.sh.
* gnu/packages/cpp.scm (libzen)[source]: Fix sha256.
[arguments]: Remove manual autogen.sh.
2019-01-21 22:40:25 +01:00
Danny Milosavljevic 0233bdde6c
gnu: xen: Update comments.
* gnu/packages/virtualization.scm (xen): Update comments.
2019-01-21 12:23:58 +01:00
Danny Milosavljevic 504f3ac840
gnu: xen: Don't patch etherboot Makefile.
* gnu/packages/virtualization.scm (xen)[arguments]<#:phases>[patch]:
Don't patch etherboot's "Makefile".
2019-01-21 12:09:32 +01:00
Mathieu Othacehe b65b78ff38
gnu: calibre: Fix PDF to EPUB conversion.
When trying to convert a PDF to EPUB, the following error occurs:

File "/gnu/store/kz6bgqw9z7akj11zh20wkx14cgq0s3n2-calibre-3.35.0/lib/calibre/calibre/ebooks/pdf/pdftohtml.py", line 76, in pdftohtml
    _('Could not find pdftohtml, check it is in your PATH'))

Hardcode pdftohtml binary path by patching pdftohtml.py.

* gnu/packages/ebook.scm (calibre)[arguments]: Patch pdftohtml.py in
'configure phase to set hardcode pdftohtml binary path.
2019-01-21 10:56:24 +01:00
Efraim Flashner 26e4203be1
gnu: moreutils: Update to 0.63.
* gnu/packages/moreutils.scm (moreutils): Update to 0.63.
[arguments]: All phases return #t.
2019-01-21 11:31:06 +02:00
Efraim Flashner f3359f93f6
gnu: perl-module-scandeps: Update to 1.27.
* gnu/packages/perl.scm (perl-module-scandeps): Update to 1.27.
2019-01-21 11:21:14 +02:00
Efraim Flashner 5b0fe2b8f1
gnu: perl-json: Update to 4.01.
* gnu/packages/perl.scm (perl-json): Update to 4.01.
[source]: Update source uri.
2019-01-21 11:21:14 +02:00
Efraim Flashner 8c396a0576
gnu: perl-json-xs: Update to 4.0.
* gnu/packages/perl.scm (perl-json-xs): Update to 4.0.
[native-inputs]: Add perl-canary-stability.
2019-01-21 11:21:14 +02:00
Efraim Flashner cf867de061
gnu: perl-file-remove: Update to 1.58.
* gnu/packages/perl.scm (perl-file-remove): Update to 1.58.
[description]: Texify the description.
2019-01-21 11:21:14 +02:00
Efraim Flashner 755fc87305
gnu: perl-file-homedir: Update to 1.004.
* gnu/packages/perl.scm (perl-file-homedir): Update to 1.004.
2019-01-21 11:21:13 +02:00
Efraim Flashner cbe6f6e385
gnu: perl-file-which: Update to 1.23.
* gnu/packages/perl.scm (perl-file-which): Update to 1.23.
[source]: Update source uri.
[home-page]: Update to new home-page.
2019-01-21 11:21:13 +02:00
Efraim Flashner 6a19aaca50
gnu: perl-file-slurp: Update to 9999.25.
* gnu/packages/perl.scm (perl-file-slurp): Update to 9999.25.
[source]: Update source uri.
2019-01-21 11:21:13 +02:00
Efraim Flashner f860a068f9
gnu: perl-text-template: Update to 1.54.
* gnu/packages/perl.scm (perl-text-template): Update to 1.54.
[native-inputs]: Add perl-test-more-utf8, perl-test-warnings.
2019-01-21 11:21:13 +02:00
Efraim Flashner 26eb9260f9
gnu: Add perl-test-more-utf8.
* gnu/packages/perl-check.scm (perl-test-more-utf8): New variable.
2019-01-21 11:21:12 +02:00
Danny Milosavljevic 7aae5d6154
gnu: xen: Update comment.
Follow-up to 35e8900da0.

* gnu/packages/virtualization.scm (xen): Update comment.
2019-01-21 10:15:53 +01:00
Danny Milosavljevic 35e8900da0
gnu: Add xen.
* gnu/packages/virtualization.scm (xen): New variable.
2019-01-21 10:15:04 +01:00
Clément Lassieur 0d928d223b
gnu: gajim: Update to 1.1.2.
* gnu/packages/messaging.scm (gajim): Update to 1.1.2.
2019-01-21 09:25:43 +01:00
Clément Lassieur 37ce9d957b
gnu: python-nbxmpp: Update to 0.6.9.
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.9.
2019-01-21 09:25:39 +01:00
Efraim Flashner 9f8fee5027
gnu: qscintilla: Update to 2.10.8.
* gnu/packages/qt.scm (qscintilla): Update to 2.10.8.
(python-qscintilla)[arguments]: Update custom 'configure phase.
2019-01-21 10:03:09 +02:00
Efraim Flashner d4274628a6
gnu: python-pyqt: Update to 5.11.3.
* gnu/packages/qt.scm (python-pyqt): Update to 5.11.3.
* gnu/packages/patches/pyqt-public-sip: Update patch.
2019-01-21 10:03:09 +02:00
Efraim Flashner 0dae43ac6a
gnu: python-sip: Update to 4.19.13.
* gnu/packages/qt.scm (python-sip): Update to 4.19.13.
2019-01-21 10:03:09 +02:00
Efraim Flashner c82cd3a7bd
gnu: qt: Update to 5.11.3.
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtscxml,
qtgamepad, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d,
qtnetworkauth, qtremoteobjects, qtspeech): Update to 5.11.3.
(qt)[source]: Remove patch.
* gnu/packages/patches/qt-5-renameat2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-01-21 10:03:05 +02:00
Tobias Geerinckx-Rice 7469b98db3
gnu: xcursorgen: Update to 1.0.7.
* gnu/packages/xorg.scm (xcursorgen): Update to 1.0.7.
2019-01-21 03:12:25 +01:00
Tobias Geerinckx-Rice 969bbf8bd6
gnu: umoci: Update to 0.4.3.
* gnu/packages/virtualization.scm (umoci): Update to 0.4.3.
2019-01-21 03:12:25 +01:00
Tobias Geerinckx-Rice dba326def1
gnu: vlc: Update to 3.0.6.
* gnu/packages/video.scm (vlc): Update to 3.0.6.
2019-01-21 03:12:25 +01:00
Tobias Geerinckx-Rice 17634f0b2a
gnu: perl-xml-compile: Update to 1.61.
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.61.
2019-01-21 03:12:25 +01:00
Andreas Enge 8e3e51df11
python-cysignals: Update to 1.9.0.
* gnu/packages/python-xyz.scm (python-cysignals, python2-cysignals):
Update to 1.9.0.
2019-01-20 23:32:18 +01:00
Ludovic Courtès 3e2d4e69c3
Merge branch 'master' into staging 2019-01-20 22:12:10 +01:00
Efraim Flashner 32d92d2cde
gnu: freedink-data: Update to 1.08.20190120.
* gnu/packages/games.scm (freedink-data): Update to 1.08.20190120.
2019-01-20 22:33:06 +02:00
Efraim Flashner 8ca06df5c2
gnu: freedink-dfarc: Add upstream refresh information.
* gnu/packages/games.scm (freedink-dfarc)[properties]: New field.
2019-01-20 22:33:06 +02:00
Efraim Flashner 151fa92672
gnu: fredink-data: Add upstream refresh information.
* gnu/packages/games.scm (freedink-data)[properties]: New field.
2019-01-20 22:33:06 +02:00
Efraim Flashner f9eab0be73
gnu: freedink-engine: Add upstream refresh information.
* gnu/packages/games.scm (freedink-engine)[properties]: New field.
2019-01-20 22:33:00 +02:00
Pkill -9 e5ad2cdf17
gnu: Add pencil2d.
* gnu/packages/animation.scm (pencil2d): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-20 19:21:43 +01:00
Pierre Langlois b06966b4e1
gnu: qjackctl: Disable xunique.
* gnu/packages/audio.scm (qjackctl)[arguments]: Pass "--disable-xunique" to
configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-20 18:51:51 +01:00
Tobias Geerinckx-Rice ff8a66bc61
gnu: ocrad: Update to 0.27.
* gnu/packages/ocr.scm (ocrad): Update to 0.27.
2019-01-20 16:34:43 +01:00
Tobias Geerinckx-Rice 04f3a5a4ae
gnu: links: Update to 2.18.
* gnu/packages/web-browsers.scm (links): Update to 2.18.
2019-01-20 16:34:42 +01:00
Tobias Geerinckx-Rice 1c17adbc79
gnu: csound: Update to 6.12.0.
* gnu/packages/audio.scm (csound): Update to 6.12.0.
2019-01-20 15:34:09 +01:00
Kei Kebreau 71f2b4b8f3
gnu: vboot-utils: Install development keys.
* gnu/packages/bootloaders.scm (vboot-utils)[arguments]: Add 'install-devkeys'
phase.
2019-01-20 01:51:39 -05:00
Ludovic Courtès 93d137020b
gnu: subversion: Mention "svn" in the description.
* gnu/packages/version-control.scm (subversion)[description]: Mention
"svn".
2019-01-20 01:42:11 +01:00
Ludovic Courtès 7e6d8d366a
ci: Use a valid 'current-guix'.
This fixes a regression introduced in
b5f8c2c885 whereby 'current-guix' (needed
by some of the system tests) would fail to build.
Reported by Ricardo Wurmus <rekado@elephly.net>.

It also speeds up compilation of 'current-guix' since the channel
instance is already compiled or can be built quickly compared to the
default 'current-guix'.

* gnu/packages/package-management.scm (current-guix-package): New
variable.
(current-guix): Honor it.
* gnu/ci.scm (channel-build-system): New variable.
(channel-instances->derivation): New procedure.
(system-test-jobs): Add #:source and #:commit parameters.
Define 'instance' and parameterize CURRENT-GUIX-PACKAGE.
(hydra-jobs)[checkout, commit, source]: New variables.
Pass #:source and #:commit to 'system-test-jobs'.
2019-01-20 01:42:11 +01:00
Nicolas Goaziou 85a3d63f4a
gnu: emacs-matrix-client: Update to a0623667.
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Update to a0623667.
2019-01-19 22:32:57 +01:00
Ricardo Wurmus 977403feb2
gnu: texlive-texmf: Fix build.
This is a follow-up to commit a1b4d62cda.

* gnu/packages/tex.scm (texlive-texmf)[arguments]: Unset texlive-bin search
path.
2019-01-19 19:55:56 +01:00
Efraim Flashner 560df540a6
gnu: Add endless-sky.
* gnu/packages/games.scm (endless-sky): New variable.
2019-01-19 19:18:37 +02:00
Rutger Helling 8d09e97b8c
gnu: wine-staging: Update to 4.0-rc7.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc7.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc7.
2019-01-19 11:28:47 +01:00
Ludovic Courtès 9a0bc7b5aa
gnu: spacefm: Fix build against glibc 2.28.
* gnu/packages/lxde.scm (spacefm)[source](modules, snippet): New fields.
2019-01-19 01:26:34 +01:00
Ludovic Courtès 1d80ec44d3
gnu: youtube-dl: Update to 2019.01.17.
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.17.
2019-01-19 01:26:34 +01:00
Leo Famulari d680a8afd1
gnu: Inkscape: Update to 0.92.4.
* gnu/packages/inkscape.scm (inkscape): Update to 0.92.4.
[source]: Remove obsolete patches.
2019-01-18 18:45:37 -05:00
Tobias Geerinckx-Rice 043eeda100
gnu: smartmontools: Update to 7.0.
* gnu/packages/admin.scm (smartmontools): Update to 7.0.
2019-01-19 00:03:34 +01:00
Tobias Geerinckx-Rice 9e5709f00d
gnu: openconnect: Update to 8.02.
* gnu/packages/vpn.scm (openconnect): Update to 8.02.
2019-01-19 00:03:31 +01:00
Tobias Geerinckx-Rice 8b1d0ff43c
gnu: openconnect: Use HTTPS home page.
* gnu/packages/vpn.scm (openconnect)[home-page]: Use HTTPS.
2019-01-19 00:03:25 +01:00
Tobias Geerinckx-Rice 3a1d01ca32
gnu: liburcu: Update to 0.10.2.
* gnu/packages/datastructures.scm (liburcu): Update to 0.10.2.
2019-01-19 00:03:23 +01:00
Tobias Geerinckx-Rice 4dfda8dce0
gnu: liburcu: Use HTTPS home page.
* gnu/packages/datastructures.scm (liburcu)[home-page]: Use HTTPS.
2019-01-19 00:03:14 +01:00
Nicolas Goaziou fdc7299a56
gnu: emacs-matrix-client: Bump revision.
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Bump revision to trigger
  the update, since updating commit is not enough.
2019-01-18 22:28:30 +01:00
Ricardo Wurmus 64a1ddba7a
gnu: graphene: Remove custom autogen phase.
* gnu/packages/gtk.scm (graphene)[arguments]: Remove 'autogen phase.
2019-01-18 20:37:34 +01:00
Ricardo Wurmus 3b39ae9f4b
gnu: Add libnfs.
* gnu/packages/file-systems.scm (libnfs): New variable.
2019-01-18 20:32:24 +01:00
Ricardo Wurmus 204cfbe1f4
gnu: Add mozjs-60.
* gnu/packages/gnuzilla.scm (mozjs-60): New variable.
2019-01-18 20:32:12 +01:00
Ricardo Wurmus 6cc147a31b
gnu: mozjs-52: Add configure flag to prevent crash.
* gnu/packages/gnuzilla.scm (mozjs-52)[arguments]: Pass "--disable-jemalloc"
to prevent crashes in gnome-shell.
2019-01-18 20:32:04 +01:00
Ricardo Wurmus 4b2ed6c2a3
gnu: Add libdazzle.
* gnu/packages/gnome.scm (libdazzle): New variable.
2019-01-18 20:29:28 +01:00
Ricardo Wurmus 0c90d4ad0a
gnu: Add libimobiledevice.
* gnu/packages/libusb.scm (libimobiledevice): New variable.
2019-01-18 20:27:58 +01:00
Ricardo Wurmus dddf975ffb
gnu: Add libusbmuxd.
* gnu/packages/libusb.scm (libusbmuxd): New variable.
2019-01-18 20:24:00 +01:00
Ricardo Wurmus 1b95533740
gnu: Add libplist.
* gnu/packages/libusb.scm (libplist): New variable.
2019-01-18 20:23:54 +01:00
Ricardo Wurmus 3ecb1d0552
gnu: libusb.scm: Use license: prefix.
* gnu/packages/libusb.scm: Use "license:" prefix.
2019-01-18 20:23:25 +01:00
Ricardo Wurmus bd9d3db6fe
gnu: Add umockdev.
* gnu/packages/check.scm (umockdev): New variable.
2019-01-18 20:22:27 +01:00
Ricardo Wurmus dbac4833b4
gnu: ibus: Do not hardcode Python version.
* gnu/packages/ibus.scm (ibus)[arguments]: Remove hardcoded Python version.
2019-01-18 17:58:58 +01:00
Amin Bandali 6654f8c144
gnu: z3: Update to 4.8.4.
* gnu/packages/maths.scm (z3): Update to 4.8.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-18 11:12:59 -05:00
Rutger Helling 97da616144
gnu: xpra: Update to 2.4.3.
* gnu/packages/xorg.scm (xpra): Update to 2.4.3.
2019-01-18 15:28:46 +01:00
Eric Bavier fd466fb815
gnu: stress-make: Fix glob configuration.
* gnu/packages/debug.scm (stress-make)[arguments]: Adopt configure cache value
"make_cv_sys_gnu_glob=yes" from gnu-make package.
2019-01-18 00:30:28 -06:00
Nicolas Goaziou e6ab20f71d
gnu: emacs-matrix-client: Update to 2a95a1f.
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Update to 2a95a1f.
[propagated-inputs]: Add `emacs-anaphora'.
2019-01-17 22:49:12 +01:00
Nicolas Goaziou 60ceff7ef5
gnu: Add emacs-anaphora.
* gnu/packages/emacs-xyz.scm (emacs-anaphora): New variable.
2019-01-17 22:48:48 +01:00
Vagrant Cascadian cac00bbd97
gnu: electron-cash: Update to 3.3.4.
* gnu/packages/finance.scm (electron-cash): Update to 3.3.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-17 16:26:37 -05:00
Mark H Weaver 8b15b3a1e8
gnu: linux-libre: Update to 4.20.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.3.
(%linux-libre-hash): Update hash.
2019-01-17 16:11:35 -05:00
Mark H Weaver df9db3d1d2
gnu: linux-libre@4.19: Update to 4.19.16.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.16.
(%linux-libre-4.19-hash): Update hash.
2019-01-17 16:10:49 -05:00
Mark H Weaver cadb457a34
gnu: linux-libre@4.14: Update to 4.14.94.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.94.
(%linux-libre-4.14-hash): Update hash.
2019-01-17 16:10:07 -05:00
Mark H Weaver 94c5f46217
gnu: linux-libre@4.9: Update to 4.9.151.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.151.
2019-01-17 16:09:31 -05:00
Mark H Weaver 8ce7fb035f
gnu: linux-libre@4.4: Update to 4.4.171.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.171.
2019-01-17 16:07:44 -05:00
Leo Famulari 2b65a9e6d1
gnu: OpenSSH: Fix CVE-2018-20685.
* gnu/packages/patches/openssh-CVE-2018-20685.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2019-01-17 14:02:04 -05:00
Ricardo Wurmus 3d7ad1dc9f
gnu: ghc-cryptonite: Disable tests.
* gnu/packages/haskell-crypto.scm (ghc-cryptonite)[arguments]: Disable tests.
2019-01-17 17:58:35 +01:00
Ricardo Wurmus 5de93cdba7
gnu: ghc-8: Patch ghc-pkg for reproducibility.
Fixes <https://bugs.gnu.org/33922>.

Co-authored-by: Timothy Sample <samplet@ngyro.com>.

* gnu/packages/haskell.scm (ghc-8)[arguments]: Add build phase
"fix-ghc-pkg-nondeterminism".
2019-01-17 17:56:50 +01:00
Mathieu Othacehe a8307a178b
gnu: Add guile-parted.
* gnu/packages/guile.scm (guile-parted): New variable.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe 7e3e6d721d
gnu: guile-newt: Update to revision 4.
* gnu/packages/guile.scm (guile-newt): Update to revision 4.
2019-01-17 14:04:22 +01:00
Mathieu Othacehe 08af580bde
gnu: kmscon: Add runtime keymap update support.
* gnu/packages/patches/kmscon-runtime-keymap-switch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/terminals.scm (kmscon)[source]: Add patch.
2019-01-17 14:04:20 +01:00
Mathieu Othacehe 15f0719e67
guile: newt: Update revision to 3.
* gnu/packages/guile.scm (guile-newt): Update revision to 3.
2019-01-17 14:04:20 +01:00
Gabriel Hondet 57cd7d92d8
gnu: Add ghc-tldr.
* gnu/packages/haskell.scm (ghc-tldr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-17 14:04:20 +01:00
Marius Bakke 073f5f2057
Revert "Revert "gnu: man-db: Embed absolute reference to 'preconv'.""
This reverts commit ccb15b343e.

Now that we've fixed the segfault with groff's preconv (see
73b2ce8795), it's safe to re-apply this fix.
2019-01-17 12:29:40 +01:00
Pierre Neidhardt 3d540c48e7
gnu: Add emacs-edbi-sqlite.
* gnu/packages/emacs-xyz.scm (emacs-edbi-sqlite): New variable.
2019-01-17 12:20:55 +01:00
Pierre Neidhardt c010ec65ae
gnu: Add emacs-edbi.
* gnu/packages/emacs-xyz.scm (emacs-edbi): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 8c98ce92b9
gnu: Add emacs-epc.
* gnu/packages/emacs-xyz.scm (emacs-epc): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 3e1fcc5ef4
gnu: Add emacs-ctable.
* gnu/packages/emacs-xyz.scm (emacs-ctable): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 5544a07fb5
gnu: Add emacs-e2wm.
* gnu/packages/emacs-xyz.scm (emacs-e2wm): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 9830f1a249
gnu: Add emacs-window-layout.
* gnu/packages/emacs-xyz.scm (emacs-window-layout): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt 2c114220aa
gnu: Add perl-rpc-epc-service.
* gnu/packages/libevent.scm (perl-rpc-epc-service): New variable.
2019-01-17 12:20:54 +01:00
Pierre Neidhardt cbffb56cd4
gnu: Add perl-data-sexpression.
* gnu/packages/perl.scm (perl-data-sexpression): New variable.
2019-01-17 12:20:54 +01:00
Danny Milosavljevic 73b2ce8795
gnu: groff-minimal: Disable relocatability.
* gnu/packages/groff.scm (groff-minimal)[arguments]<#:phases>
[disable-relocatability]: New phase.
2019-01-17 10:07:07 +01:00
Gabriel Hondet 6c4a951a6e
gnu: gauche: Remove number of packages from description.
* gnu/packages/scheme.scm (gauche)[description]: Remove number of packages.
[arguments]: Remove useless code.
2019-01-17 08:24:30 +01:00
Hartmut Goebel 2615ee9520
gnu: kwindowsystem: Enable test-suite.
* gnu/package/kde-frameworks.scm(kwindowsystem)
  [inputs]: Add openbox.
  [arguments] <#:tests?> Remove.
  <#:phases> 'blacklist-failing-tests: New phase.
  <#:phases> 'check: Start openbox, don't set QT_PLUGIN_PATH, use invkove,
  simplify and cleanup code. No longer move 'check behind install.
2019-01-17 00:19:33 +01:00
Hartmut Goebel e11553f742
gnu: knewstuff: Enable test-suite.
Without anything changed the test-suite now passes, thus can be enabled.

* gnu/package/kde-frameworks.scm(knewstuff)[arguments]<#:tests?>: Remove.
2019-01-17 00:19:33 +01:00
Hartmut Goebel 048c557d66
gnu: kemoticons: Enable test-suite.
Without anything changed the test-suite now passes, thus can be enabled.

* gnu/package/kde-frameworks.scm(kemoticons)[arguments]<#:tests?>: Remove.
2019-01-17 00:19:33 +01:00
Hartmut Goebel 8c81e9f2db
gnu: kpackage: Enable test-suite.
* gnu/package/kde-frameworks.scm(kpackage)[arguments]
  <#:tests?>: Remove. <#:phases>: Add phase 'patch-tests.
2019-01-17 00:19:33 +01:00
Hartmut Goebel 6ca3218812
gnu: kirigami: Enable test-suite.
The error which inhibited running the tests no longer occurs
in 5.49.0, although now no tests are found at all.  Since no tests
are found now, the phase 'check-setup can be removed, too,
and thus the 'arguments' at all.

* gnu/packages/kde-frameworks.scm(kirigami)[arguments]: Remove.
2019-01-17 00:19:32 +01:00
Hartmut Goebel 2d4589ffb9
gnu: kcoreaddons: Enable test-suite.
Enable running the tests and blacklist the one failing test.

* gnu/package/kde-frameworks.scm(kcoreaddons)[arguments]
  <#:tests?>: Remove. <#:phases>: Add phase 'blacklist-failing-test.
2019-01-17 00:19:32 +01:00
Julien Lepiller 22fe911061
gnu: php: Update to 7.3.1.
* gnu/packages/php.scm (php): Update to 7.3.1.
2019-01-16 20:35:41 +01:00
Gabriel Hondet 4d390cad25
gnu: Add ocaml-ppxlib.
* gnu/packages/ocaml.scm (ocaml-ppxlib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:44 +01:00
Gabriel Hondet 3f623d00a7
gnu: Add ocaml-ppx-derivers.
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:37 +01:00
Gabriel Hondet b5bab81c10
gnu: Add ocaml-migrate-parsetree.
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:35 +01:00
Gabriel Hondet ac06a773f5
gnu: Add ocaml-compiler-libs.
* gnu/packages/ocaml.scm (ocaml-compiler-libs): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:33 +01:00
Gabriel Hondet 22074259d2
gnu: Add ocaml-base.
* gnu/packages/ocaml.scm (ocaml-base): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:30 +01:00
Gabriel Hondet 7cca1fd400
gnu: Add ocaml-sexplib.
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:28 +01:00
Gabriel Hondet 7726124ae2
gnu: Add ocaml-parsexp.
* gnu/packages/ocaml.scm (ocaml-parsexp): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:26 +01:00
Gabriel Hondet 5fa01e8aaa
gnu: Add ocaml-sexplib0.
* gnu/packages/ocaml.scm (ocaml-sexplib0): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:21 +01:00
Efraim Flashner 5f2122fb21
gnu: gnurl: Add properties for updater.
* gnu/packages/gnunet.scm (gnurl)[properties]: New field.
2019-01-16 19:48:02 +02:00
Efraim Flashner 96733e9417
Revert "gnu: groff: Disable relocatability."
This causes more than 3600 packages to be rebuilt.

This reverts commit f57693e17c.
2019-01-16 18:31:27 +02:00
Ricardo Wurmus 4eacd52cd0
gnu: Remove unnecessary module reference.
* gnu/packages/glib.scm: Remove reference to python-xyz.
2019-01-16 16:08:30 +01:00
Ricardo Wurmus eeb883cb0d
gnu: Move Emacs packages to new module.
* gnu/packages/emacs.scm: Move almost all packages from here...
* gnu/packages/emacs-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/statistics.scm: Update module references.
2019-01-16 16:08:22 +01:00
Ricardo Wurmus 255d1bbe77
gnu: Move dbm databases to new module.
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
2019-01-16 16:08:22 +01:00
Ricardo Wurmus cd0322a3ef
gnu: Move sqlite to separate module.
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
2019-01-16 16:08:22 +01:00
Danny Milosavljevic f57693e17c
gnu: groff: Disable relocatability.
* gnu/packages/groff.scm (groff)[arguments]<#:phases>[disable-relocatability]:
New phase.
2019-01-16 15:15:30 +01:00
Clément Lassieur be1ce9fd31
gnu: Add prosody-smacks.
* gnu/packages/messaging.scm (prosody-smacks): New variable.
2019-01-16 14:26:06 +01:00
Pkill -9 a42bdd1c22
gnu: obs: Update to 22.0.3.
* gnu/packages/video.scm (obs): Update to 22.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-16 14:07:38 +01:00
nee ab100b905f
gnu: grub: Add dependency on console-setup.
* gnu/packages/bootloaders.scm (grub)[arguments]: In 'patch-stuff'
phase, patch 'grub-kbdcomp.in'.
[inputs]: Add CONSOLE-SETUP.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-01-16 14:07:38 +01:00
Efraim Flashner 39ad752cf9
gnu: kodi: Skip failing test.
* gnu/packages/kodi.scm (kodi)[source]: Add patch.
* gnu/packages/patches/kodi-skip-test-449.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-16 11:59:35 +02:00
Pierre Neidhardt be0be3dee0
gnu: Add meld.
* gnu/packages/patchutils.scm (meld): New variable.
2019-01-16 10:44:23 +01:00
nee 41a54622b6
gnu: Add console-setup.
* gnu/packages/xorg.scm (console-setup): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-01-15 23:16:20 +01:00
Ludovic Courtès fe77ede70a
gnu: Add bdfresize.
* gnu/packages/xorg.scm (bdfresize): New variable.
2019-01-15 23:16:20 +01:00
Kei Kebreau 8fb8afd98c
gnu: hyperrogue: Update to 10.5d.
* gnu/packages/games.scm (hyperrogue): Update to 10.5d.
2019-01-15 14:48:59 -05:00
Jelle Licht b03131902e
gnu: emacs-closql: Fix hash.
* gnu/packages/emacs.scm (emacs-closql)[source]: Fix incorrect hash.
2019-01-15 20:28:37 +01:00
Gabriel Hondet eac7ed195b
gnu: Add gauche.
* gnu/packages/scheme.scm (gauche): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-15 20:24:08 +01:00
Ricardo Wurmus 4fec042b54
gnu: Move Python compression packages to new module.
* gnu/packages/compression.scm (python-lzo, python2-lzo, python-lz4,
python2-lz4, python-lzstring, python2-lzstring, bitshuffle,
bitshuffle-for-snappy): Move variables from here...
* gnu/packages/python-compression.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/bioinformatics.scm,
gnu/packages/java-compression.scm,
gnu/packages/xorg.scm: Adjust module references.
2019-01-15 17:45:33 +01:00
Ricardo Wurmus 22e623aef0
gnu: Add python-grpcio.
* gnu/packages/python-xyz.scm (python-grpcio): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus 2884aac071
gnu: Add python-gast.
* gnu/packages/python-xyz.scm (python-gast): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus 79869f8064
gnu: Add python-astunparse.
* gnu/packages/python-xyz.scm (python-astunparse): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus 81bed4e92b
gnu: Add python-astor.
* gnu/packages/python-xyz.scm (python-astor): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus d0446c4b55
gnu: Add python-absl-py.
* gnu/packages/python-xyz.scm (python-absl-py): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus c22c803efc
gnu: Add protobuf-next.
* gnu/packages/protobuf.scm (protobuf-next): New variable.
2019-01-15 17:27:34 +01:00
Ricardo Wurmus e2931e9979
gnu: Add c-ares-next.
* gnu/packages/adns.scm (c-ares-next): New variable.
2019-01-15 17:27:34 +01:00
Danny Milosavljevic 9210a6c082
gnu: yosys: Update to 0.8.
* gnu/packages/fpga.scm (yosys): Update to 0.8.
2019-01-15 16:46:45 +01:00
Danny Milosavljevic eccd3f6d2e
gnu: arachne-pnr: Fix tests.
* gnu/packages/fpga.scm (arachne-pnr)[arguments]: Add #:make-flags.
<#:phases>[configure]: Remove Makefile substitution.
2019-01-15 16:46:45 +01:00
Danny Milosavljevic 72dd271cee
gnu: icestorm: Update to 0.0-2-c0cbae88a.
* gnu/packages/fpga.scm (icestorm): Update to 0.0-2-c0cbae88a.
2019-01-15 16:46:45 +01:00
Amin Bandali e82baf69f1
gnu: arachne-pnr: Update to 840bdfdeb.
* gnu/packages/fpga.scm (arachne-pnr): Update to 840bdfdeb.
2019-01-15 16:46:43 +01:00
swedebugia 357b9f9d71
gnu: Rename sshfs-fuse to sshfs.
* gnu/packages/linux.scm (sshfs): New variable.
(sshfs-fuse): Mark as superseded.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-15 10:45:45 -05:00
Ricardo Wurmus 5327e912a8
gnu: Add missing module reference.
This is a follow-up to commit 44d10b1f72.

* gnu/packages/tex.scm: Add missing reference to python-xyz.
2019-01-15 14:58:13 +01:00
Ricardo Wurmus 44d10b1f72
gnu: Separate Python core packages from the rest.
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
2019-01-15 14:46:44 +01:00
Danny Milosavljevic f370509096
gnu: docker-cli: Don't install the same executable twice.
Reported by Meiyo Peng <meiyo.peng@gmail.com>.

* gnu/packages/docker.scm (docker-cli)[arguments]<#:phases>[install]:
Don't install the same executable twice.
2019-01-15 13:32:09 +01:00
Ricardo Wurmus c4153008f7
gnu: python-numpy-documentation: Add missing packages to texlive-union.
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add
texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 24d0c4d0eb
gnu: texlive-fonts-amsfonts: Install type1 fonts.
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[native-inputs]: Fetch type1
font files.
[arguments]: Install them.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 1574932deb
gnu: texlive-bin: Do not truncate output lines.
* gnu/packages/tex.scm (texlive-bin)[arguments]: Change default line limits in
build phase.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 769bb5e56b
gnu: Add texlive-luatex-luaotfload.
* gnu/packages/tex.scm (texlive-luatex-luaotfload): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus c2a1fe4ad2
gnu: Add texlive-fonts-lm.
* gnu/packages/tex.scm (texlive-fonts-lm): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 4e9242aaeb
gnu: Add texlive-fonts-cm-super.
* gnu/packages/tex.scm (texlive-fonts-cm-super): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus d7da23721a
gnu: texlive-union: Implement in terms of texlive-base.
* gnu/packages/tex.scm (texlive-union): Inherit from texlive-base.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus bfcb9d4dbf
gnu: Add texlive-base.
* gnu/packages/tex.scm (texlive-base): New variable.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus a1b4d62cda
gnu: texlive-bin: Add native search paths.
* gnu/packages/tex.scm (texlive-bin)[native-search-paths]: Add specifications
for TEXMF and TEXMFCNF.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 476f7fceb7
gnu: texlive-union: Wrap programs weakly.
* gnu/packages/tex.scm (texlive-union)[arguments]: Wrap programs with TEXMFCNF
and TEXMF so that environment variables take precedence.
2019-01-15 13:05:22 +01:00
Ricardo Wurmus 9c45beb4cc
gnu: texlive-latex-fontspec: Install default fontspec.cfg.
* gnu/packages/tex.scm (texlive-latex-fontspec)[arguments]: Add build phase to
install fontspec.cfg.
2019-01-15 13:05:22 +01:00
Efraim Flashner ebe0271aa0
gnu: opencv: Update configure flags.
* gnu/packages/image-processing.scm (opencv)[arguments]: Change the
configure-flags on a per-architecture basis.
2019-01-15 13:20:14 +02:00
Ludovic Courtès 74a8b2cca1
gnu: guile-commonmark: Install .scm files in the right place.
Previously they'd be installed in PREFIX/share/share/guile/site.

* gnu/packages/guile.scm (guile-commonmark)[modules, snippet]: New
fields.
2019-01-15 12:05:21 +01:00
Arun Isaac 6aa4f09eb6
gnu: font-dosis: Switch to font-build-system.
* gnu/packages/fonts.scm (font-dosis): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
[native-inputs]: Remove unzip.
2019-01-15 15:27:54 +05:30
Clément Lassieur 67c05f587a
gnu: python-git-review: Update to 1.27.0.
* gnu/packages/openstack.scm (python-git-review): Update to 1.27.0.
[arguments]: Get the 'wrap-program' phase to return #t.
2019-01-15 10:49:18 +01:00
Clément Lassieur 104e1d55c7
gnu: prosody: Update to 0.11.2.
* gnu/packages/messaging.scm (prosody): Update to 0.11.2.
2019-01-15 10:49:18 +01:00
Efraim Flashner 38f18309e1
gnu: youtube-dl: Update to 2019.01.10.
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.10.
[source]: Update uri.
2019-01-15 09:42:17 +02:00
Ludovic Courtès e98c354d1a
gnu: guile-ssh: Use 'git-fetch'.
* gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
2019-01-14 23:43:49 +01:00
Ludovic Courtès a8b0556ea1
gnu: libssh: Update to 0.8.6.
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.8.6.
[source](patches): Remove.
[arguments]: Add #:phases.
(guile-ssh)[source](modules, snippet]: New fields.
2019-01-14 23:43:49 +01:00
Ludovic Courtès 152d4076a4
gnu: guile-json: Add 3.1.0.
* gnu/packages/guile.scm (guile-json-3): New variable.
2019-01-14 23:43:49 +01:00
Ricardo Wurmus 21b41a79fe
gnu: Move Perl compression packages to new module.
* gnu/packages/compression.scm (perl-compress-raw-bzip2,
perl-compress-raw-zlib, perl-io-compress, perl-archive-zip,
perl-archive-extract): Move from here...
* gnu/packages/perl-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm:
Adjust references.
2019-01-14 18:12:54 +01:00
Ricardo Wurmus b80ecc5a63
gnu: texlive-latex-fontspec: Propagate l3packages.
* gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove
texlive-latex-l3kernel.
[propagated-inputs]: Add texlive-latex-l3packages.
2019-01-14 15:42:32 +01:00
Ricardo Wurmus 2fea7041a3
gnu: texlive-latex-l3packages: Propagate l3kernel.
* gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move
texlive-latex-l3kernel from here...
[propagated-inputs]: ...to here.
2019-01-14 15:39:22 +01:00
Ricardo Wurmus 73635e3f69
gnu: Add texlive-latex-changepage.
* gnu/packages/tex.scm (texlive-latex-changepage): New variable.
2019-01-14 14:13:21 +01:00
Ricardo Wurmus 6309d21579
gnu: Add texlive-generic-babel-german.
* gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
2019-01-14 14:13:21 +01:00
Ricardo Wurmus d68c8017f1
gnu: texlive-latex-base: Install configuration files.
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all
configuration files.
[native-inputs]: Move texlive-generic-hyph-utf8 from here...
[propagated-inputs]: ...to here.
2019-01-14 14:13:21 +01:00
Efraim Flashner 6c56e9c493
gnu: opencv: Use 'git-fetch'.
* gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'.
[native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib.
Remove unzip.
[arguments]: Update custom 'unpack-submodule-sources accordingly. Update
paths in configure-flags, 'diable-broken-tests phase.
2019-01-14 15:07:42 +02:00
Efraim Flashner 7b28210531
gnu: python-django-filter: Use 'invoke'.
* gnu/packages/django.scm (python-django-filter)[arguments]: Use
'invoke'.
2019-01-14 15:07:42 +02:00
Efraim Flashner 8e21fa0bd3
gnu: opencv: Loosen test suite failures.
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch
to opencv-contrib.
[arguments]: Update 'unpack-submodule-sources phase.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-14 15:07:42 +02:00
Efraim Flashner fdeb2def6a
gnu: opencv: Update configure flags.
* gnu/packages/image-processing.scm (opencv)[arguments]: Don't use
precompiled headers. Enable all available CPU optimizations.
2019-01-14 15:07:42 +02:00
Efraim Flashner b5baf9529e
gnu: opencv: Don't hardcode build directories.
* gnu/packages/image-processing.scm (opencv)[arguments]: Change
OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd'
instead of hardcoding the build path.
2019-01-14 15:07:41 +02:00
Efraim Flashner 6949f45c10
gnu: opencv: Fix building on non-x86_64 systems.
* gnu/packages/image-processing.scm (opencv)[arguments]: Add
configure-flag to disable carotene. Don't require x86_64 CPU
except on x86_64. Fix typo.
2019-01-14 15:07:41 +02:00
Efraim Flashner c5c42f0a9c
gnu: gnurl: Update to 7.63.0.
* gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
2019-01-14 13:57:49 +02:00
Clément Lassieur 6e46be066a
gnu: emacs-pass: Update to 1.8.
* gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
2019-01-14 12:33:46 +01:00
Rutger Helling 478040d4fb
gnu: dosbox: Update to 0.74-2.
* gnu/packages/emulators.scm (dosbox): Update to 0.74-2.
[arguments]: Use invoke in 'autogen.sh phase.
2019-01-14 09:08:04 +01:00
Mark H Weaver 72b308364f
gnu: linux-libre: Update to 4.20.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2.
(%linux-libre-hash): Update hash.
2019-01-14 01:29:47 -05:00
Mark H Weaver 8fa75a2266
gnu: linux-libre@4.19: Update to 4.19.15.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15.
(%linux-libre-4.19-hash): Update hash.
2019-01-14 01:28:02 -05:00
Mark H Weaver 8b2aabd9d9
gnu: linux-libre@4.14: Update to 4.14.93.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93.
(%linux-libre-4.14-hash): Update hash.
2019-01-14 01:26:21 -05:00
Mark H Weaver e724e1543a
gnu: linux-libre@4.9: Update to 4.9.150.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
2019-01-14 01:25:28 -05:00
Mark H Weaver 0dd2a4f324
gnu: linux-libre@4.4: Update to 4.4.170.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
2019-01-14 01:24:40 -05:00
Gabriel Hondet 64d25f0be2
gnu: Add ocaml-merlin.
* gnu/packages/ocaml.scm (ocaml-merlin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
Gabriel Hondet cc353cc067
gnu: Add emacs-tldr.
* gnu/packages/emacs.scm (emacs-tldr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
Christopher Baines 24a23bea20
gnu: Add python-miniboa.
python2-miniboa is required for the linkchecker testsuite.

* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
2019-01-13 20:47:40 +00:00
Christopher Baines c4aa1ebc81
gnu: python-pillow: Update to 5.4.1.
I'm looking at this, as this release fixes an issue with the Django testsuite:

https://github.com/python-pillow/Pillow/pull/3525

* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
2019-01-13 17:09:52 +00:00
Ricardo Wurmus 14bba460ab
gnu: r-biocgenerics: Move to bioconductor.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
2019-01-13 13:04:18 +01:00
Ricardo Wurmus 7097c7009d
gnu: r-annotate: Move to bioconductor.
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
2019-01-13 13:04:18 +01:00
Ricardo Wurmus c80fb90f4a
gnu: r-vegan: Move from bioinformatics to cran.
* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
2019-01-13 13:04:18 +01:00
Efraim Flashner d691e96657
gnu: conda: Use 'invoke'.
* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
2019-01-13 12:44:03 +02:00
Efraim Flashner 675e7bba3e
gnu: python-conda: All phases return #t.
* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
2019-01-13 12:44:03 +02:00
Efraim Flashner e227f248a6
gnu: python-conda: Fix test suite.
* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
2019-01-13 12:44:00 +02:00
Ricardo Wurmus 82acd43cbd
gnu: Add r-raster.
* gnu/packages/cran.scm (r-raster): New variable.
2019-01-13 11:14:44 +01:00
Ricardo Wurmus 104e7c3c92
gnu: r-ggformula: Update to 0.9.1.
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
2019-01-13 11:14:43 +01:00
Ricardo Wurmus 3fe45dda0a
gnu: r-tibble: Update to 2.0.1.
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
2019-01-13 11:14:43 +01:00
Ricardo Wurmus 523762e332
gnu: r-psych: Update to 1.8.12.
* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
2019-01-13 11:14:43 +01:00
Efraim Flashner ad79ae7e2d
gnu: bitshuffle-for-snappy: Inherit package arguments.
* gnu/packages/compression.scm (bitshuffle-for-snappy)[arguments]:
Inherit package arguments from bitshuffle. Always skip tests.
2019-01-13 11:50:55 +02:00
Efraim Flashner d5fa25a5a0
gnu: bitshuffle: Fix build on armhf-linux.
* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
2019-01-13 11:31:04 +02:00
Rutger Helling 15d2cebf45
gnu: wine-staging: Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
2019-01-13 10:14:49 +01:00
Ricardo Wurmus c8d8925647
gnu: Sort package module references in (gnu packages graphviz).
* gnu/packages/graphviz.scm: Sort package module references; delete
duplicates.
2019-01-13 10:07:06 +01:00
Ricardo Wurmus 8b1c0dab45
gnu: Add python-pygraphviz.
* gnu/packages/graphviz.scm (python-pygraphviz): New variable.
2019-01-13 10:07:06 +01:00
Ricardo Wurmus 9e7f55de45
gnu: Add python-doctest-ignore-unicode.
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
2019-01-13 10:07:06 +01:00
Ricardo Wurmus c016e390bf
gnu: Add graphviz-2.38.
* gnu/packages/graphviz.scm (graphviz-2.38): New variable.
2019-01-13 10:07:06 +01:00
Marius Bakke 6764f94317
Merge branch 'master' into staging 2019-01-13 01:40:04 +01:00
Marius Bakke 1710ffa4c7
gnu: sudo: Update to 1.8.27.
* gnu/packages/admin.scm (sudo): Update to 1.8.27.
2019-01-13 01:25:18 +01:00
Marius Bakke cb3e055f86
gnu: libassuan: Update to 2.5.2.
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
2019-01-13 01:25:17 +01:00
Marius Bakke 66470a5ad0
gnu: libgxps: Update to 0.3.1.
* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
2019-01-13 01:25:17 +01:00
Marius Bakke ad55c19211
gnu: libqmi: Update to 1.22.0.
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
2019-01-13 01:25:17 +01:00
Marius Bakke de261ace27
gnu: libmbim: Update to 1.18.0.
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
2019-01-13 01:25:17 +01:00
Marius Bakke 8bcae1e60c
gnu: libsodium: Update to 1.0.17.
* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
2019-01-13 01:25:17 +01:00
Marius Bakke 0b014776c9
gnu: exempi: Update to 2.5.0.
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
2019-01-13 01:25:17 +01:00
Marius Bakke 00262db23a
gnu: seabios: Update to 1.12.0.
* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
2019-01-13 01:25:17 +01:00
Marius Bakke b2e765de4c
gnu: httpd: Update to 2.4.37.
* gnu/packages/web.scm (httpd): Update to 2.4.37.
2019-01-13 01:25:17 +01:00
Marius Bakke 1d7fbe0947
gnu: nasm: Update license.
* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
2019-01-13 01:25:16 +01:00
Marius Bakke 80459f5a21
gnu: nasm: Update home page.
* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
2019-01-13 01:25:16 +01:00
Marius Bakke 9f1448b74a
gnu: libgphoto2: Update to 2.5.22.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
2019-01-13 01:25:16 +01:00
Marius Bakke ef61969c52
gnu: re2: Update to 2019-01-01.
* gnu/packages/regex.scm (re2): Update to 2019-01-01.
2019-01-13 01:25:16 +01:00
Marius Bakke c06ef010e3
gnu: libsecret: Update to 0.18.7.
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
[native-inputs]: Remove INTLTOOL.  Add GETTEXT-MINIMAL.
2019-01-13 01:25:16 +01:00
Marius Bakke 48d5818a0e
gnu: fluidsynth: Update to 2.0.3.
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
2019-01-13 01:25:16 +01:00
Marius Bakke bf135622bd
gnu: rofi: Update to 1.5.2.
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
2019-01-13 01:25:16 +01:00
Marius Bakke 2bb187c484
gnu: xscreensaver: Update to 5.42.
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42.
[arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
2019-01-13 01:25:16 +01:00
Marius Bakke 0c4cee13b2
gnu: libcmis: Update to 0.5.2.
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2.
[source](uri): Use XZ-compressed tarball.
[arguments]: Remove #:phases.  Don't pass "--disable-werror" in #:configure-flags.
2019-01-13 01:25:15 +01:00
Marius Bakke 48a51af9d2
gnu: http-parser: Update to 2.9.0.
* gnu/packages/web.scm (http-parser): Update to 2.9.0.
2019-01-13 01:25:15 +01:00
Marius Bakke 304db09257
gnu: http-parser: Download from git.
* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
2019-01-13 01:25:15 +01:00
Marius Bakke 9c2094785d
gnu: libetonyek: Adjust inputs.
* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG.
Move GLM and MDDS to ...
[inputs]: ... here.
[propagated-inputs]: Add LIBLANGTAG and ZLIB.
2019-01-13 01:25:15 +01:00
Marius Bakke 7c3acfcb69
gnu: libetonyek: Update to 0.1.9.
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9.
[arguments]: Remove #:phases.
2019-01-13 01:25:15 +01:00
Marius Bakke b1d2e0b4e0
gnu: libcdr: Update to 0.1.5.
* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5.
[source](uri): Download over HTTPS.
[arguments]: Remove.
2019-01-13 01:25:15 +01:00
Kei Kebreau 5b9c2690af
gnu: tintin++: Update to 2.01.5.
* gnu/packages/games.scm (tintin++): Update to 2.01.5.
2019-01-12 18:37:38 -05:00
Ricardo Wurmus c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus c86fc96987
gnu: r-inspect: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus cad6fb2dec
gnu: Add r-plgem.
* gnu/packages/bioconductor.scm (r-plgem): New variable.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus 45dcd7dcfd
gnu: r-rots: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus 0b469ee225
gnu: r-glimma: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
Ricardo Wurmus 7f2b1c4af0
gnu: r-goseq: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus add2b19561
gnu: r-chippeakanno: Update to 3.16.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus c476edc2cd
gnu: r-rtracklayer: Update to 1.42.1.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 1e107b0960
gnu: r-scater: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 0f268bb275
gnu: r-singlecellexperiment: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus a0224bd4f6
gnu: r-rhdf5lib: Update to 1.4.2.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.2.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 40561d0249
gnu: r-hdf5array: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus ad10b3979d
gnu: r-qvalue: Update to 2.14.1.
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 19cacb5a2d
gnu: r-gviz: Update to 1.26.4.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.4.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus c80595935d
gnu: r-biovizbase: Update to 1.30.1.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 27194effd7
gnu: r-ensembldb: Update to 2.6.3.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.3.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 43931ff72f
gnu: r-dirichletmultinomial: Update to 1.24.1.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 15d89fe9f8
gnu: r-gage: Update to 2.32.1.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 4615cf9f1a
gnu: r-annotationhub: Update to 2.14.2.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.2.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus ab4a862ab8
gnu: r-edaseq: Update to 2.16.3.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.3.
[propagated-inputs]: Add r-biocmanager.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 3bdc41b352
gnu: r-deseq: Update to 1.34.1.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
Ricardo Wurmus 9abf344f8b
gnu: r-msnid: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 880ed11e9f
gnu: r-msnbase: Update to 2.8.3.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.3.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 6451af78e1
gnu: r-mzid: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus a4f038dc97
gnu: r-mzr: Update to 2.16.1.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 46508c3a92
gnu: r-sva: Update to 3.30.1.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus c20426ec5c
gnu: r-methylkit: Update to 1.8.1.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 5c72ebafeb
gnu: r-copywriter: Update to 2.14.1.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 86162c767e
gnu: r-rhdf5: Update to 2.26.2.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.2.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 4c7b9222dd
gnu: r-tximport: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 4bfde52178
gnu: r-genomicalignments: Update to 1.18.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.1.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 1fa12b2f06
gnu: r-biostrings: Update to 2.50.2.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.2.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus d4fc834cf7
gnu: r-biocparallel: Update to 1.16.5.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.5.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 52c977a05b
gnu: r-limma: Update to 3.38.3.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.3.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 3fd48846eb
gnu: r-variantannotation: Update to 1.28.8.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.8.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus a619850930
gnu: r-edger: Update to 3.24.3.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.3.
2019-01-12 23:35:17 +01:00
Ricardo Wurmus 00f105fe20
gnu: r-biocviews: Update to 1.50.10.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.10.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 9c1b2b2ae0
gnu: r-systempiper: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.1.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 3b8c884285
gnu: r-rbgl: Update to 1.58.1.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.1.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus ffe16ef33c
gnu: r-dexseq: Update to 1.28.1.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.1.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus f7e95c50b8
gnu: r-deseq2: Update to 1.22.2.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.2.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus feb561f721
gnu: r-scran: Update to 1.10.2.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.2.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus fd7301676e
gnu: r-sjplot: Update to 2.6.2.
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.2.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus e45f4a4dab
gnu: r-sjmisc: Update to 2.7.7.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.7.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 5e8282a4a0
gnu: r-rmpi: Update to 0.6-9.
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 80c4e75b87
gnu: r-seqminer: Update to 7.1.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 7.1.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 3bc0667f3c
gnu: r-bookdown: Update to 0.9.
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.9.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus c3e5b456be
gnu: r-protviz: Update to 0.4.0.
* gnu/packages/cran.scm (r-protviz): Update to 0.4.0.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 209e504bb1
gnu: r-ontologyindex: Update to 2.5.
* gnu/packages/cran.scm (r-ontologyindex): Update to 2.5.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus e041740289
gnu: r-chemometricswithr: Update to 0.1.13.
* gnu/packages/cran.scm (r-chemometricswithr): Update to 0.1.13.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 9ad5f4ba19
gnu: r-grimport: Update to 0.9-1.1.
* gnu/packages/cran.scm (r-grimport): Update to 0.9-1.1.
2019-01-12 23:35:16 +01:00
Ricardo Wurmus 16d296bbd1
gnu: r-shades: Update to 1.3.1.
* gnu/packages/cran.scm (r-shades): Update to 1.3.1.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 6eab52e0dd
gnu: r-ggeffects: Update to 0.8.0.
* gnu/packages/cran.scm (r-ggeffects): Update to 0.8.0.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus de7631b278
gnu: r-slam: Update to 0.1-44.
* gnu/packages/cran.scm (r-slam): Update to 0.1-44.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 2652e2534f
gnu: r-refgenome: Update to 1.7.3.1.
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.3.1.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus f0867a0e8b
gnu: r-findpython: Update to 1.0.4.
* gnu/packages/cran.scm (r-findpython): Update to 1.0.4.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 12502bf4e8
gnu: r-prediction: Update to 0.3.6.1.
* gnu/packages/cran.scm (r-prediction): Update to 0.3.6.1.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus fbd263cd4a
gnu: r-abn: Update to 1.3.
* gnu/packages/cran.scm (r-abn): Update to 1.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1b1444012b
gnu: r-sjstats: Update to 0.17.3.
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 9df469a1d4
gnu: r-emmeans: Update to 1.3.1.
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.1.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1afe56444e
gnu: r-glmmtmb: Update to 0.2.3.
* gnu/packages/cran.scm (r-glmmtmb): Update to 0.2.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 1417d5f1d5
gnu: r-rio: Update to 0.5.16.
* gnu/packages/cran.scm (r-rio): Update to 0.5.16.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 962304c31c
gnu: r-arules: Update to 1.6-2.
* gnu/packages/cran.scm (r-arules): Update to 1.6-2.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus f2fc34f241
gnu: r-fnn: Update to 1.1.2.2.
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.2.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus f0fe1a5a45
gnu: r-shinyace: Update to 0.3.3.
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 5f1f11049f
gnu: r-cubature: Update to 2.0.3.
* gnu/packages/cran.scm (r-cubature): Update to 2.0.3.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 7abb15f2bb
gnu: r-tseries: Update to 0.10-46.
* gnu/packages/cran.scm (r-tseries): Update to 0.10-46.
2019-01-12 23:35:15 +01:00
Ricardo Wurmus 9d83132757
gnu: r-statnet-common: Update to 4.2.0.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.2.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 7e9e9c9c46
gnu: r-tinytex: Update to 0.10.
* gnu/packages/cran.scm (r-tinytex): Update to 0.10.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus fc00a1f0fc
gnu: r-pillar: Update to 1.3.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.3.1.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 111516f9d6
gnu: r-gclus: Update to 1.3.2.
* gnu/packages/cran.scm (r-gclus): Update to 1.3.2.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus ed46a05c75
gnu: r-laeken: Update to 0.5.0.
* gnu/packages/cran.scm (r-laeken): Update to 0.5.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus fc74de42da
gnu: r-ddalpha: Update to 1.3.8.
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.8.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 221b3b164d
gnu: r-rmysql: Update to 0.10.16.
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.16.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 1c6d199ee8
gnu: r-mitml: Update to 0.3-7.
* gnu/packages/cran.scm (r-mitml): Update to 0.3-7.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 5703991841
gnu: r-recipes: Add missing input.
* gnu/packages/cran.scm (r-recipes)[propagated-inputs]: Add r-withr.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 77f97229c9
gnu: r-dimred: Add missing input.
* gnu/packages/cran.scm (r-dimred)[propagated-inputs]: Add r-magrittr.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 8f88701491
gnu: r-lava: Update to 1.6.4.
* gnu/packages/cran.scm (r-lava): Update to 1.6.4.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 397dba01c6
gnu: r-powerlaw: Update to 0.70.2.
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.2.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 72c4987506
gnu: r-circlize: Update to 0.4.5.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.5.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 422dea1774
gnu: r-ps: Update to 1.3.0.
* gnu/packages/cran.scm (r-ps): Update to 1.3.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus dcf89cc0cf
gnu: r-haven: Update to 2.0.0.
* gnu/packages/cran.scm (r-haven): Update to 2.0.0.
2019-01-12 23:35:14 +01:00
Ricardo Wurmus 69aad34ae0
gnu: r-feather: Update to 0.3.2.
* gnu/packages/cran.scm (r-feather): Update to 0.3.2.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 1add168ab5
gnu: r-htmltable: Update to 1.13.1.
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.1.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 37349c717e
gnu: r-httpuv: Update to 1.4.5.1.
* gnu/packages/cran.scm (r-httpuv): Update to 1.4.5.1.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 0c025a7f79
gnu: r-clipr: Update to 0.5.0.
* gnu/packages/cran.scm (r-clipr): Update to 0.5.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 2e4fc4ac62
gnu: r-caret: Update to 6.0-81.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-81.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus aa72d7f7f5
gnu: r-quantreg: Update to 5.38.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.38.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 9b7df80b9b
gnu: r-rcppeigen: Update to 0.3.3.5.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.5.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus bcc17f7f11
gnu: r-rrcov: Update to 1.4-7.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-7.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 70ee5ab137
gnu: r-cowplot: Update to 0.9.4.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.4.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 7213ef07c6
gnu: r-rann: Update to 2.6.1.
* gnu/packages/statistics.scm (r-rann): Update to 2.6.1.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 2c8594d963
gnu: r-sfsmisc: Update to 1.1-3.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-3.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 54ebdf6f74
gnu: r-rmarkdown: Update to 1.11.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.11.
[propagated-inputs]: Remove r-rprojroot.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus fb45934202
gnu: r-rstudioapi: Update to 0.9.0.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.9.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 8f49d99a84
gnu: r-git2r: Update to 0.24.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.24.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus c12e429348
gnu: r-httr: Update to 1.4.0.
* gnu/packages/statistics.scm (r-httr): Update to 1.4.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus 02c89c5812
gnu: r-commonmark: Update to 1.7.
* gnu/packages/statistics.scm (r-commonmark): Update to 1.7.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus fe8c44502b
gnu: r-checkmate: Update to 1.9.0.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.0.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus ca4861c602
gnu: r-backports: Update to 1.1.3.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.3.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 23347dc353
gnu: r-dbplyr: Update to 1.3.0.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.3.0.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus f12ed3664d
gnu: r-tibble: Update to 2.0.0.
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.0.
[propagated-inputs]: Add r-fansi and r-pkgconfig.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus c668a95861
gnu: r-rlang: Update to 0.3.1.
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.1.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 495866a9d7
gnu: r-knitr: Update to 1.21.
* gnu/packages/statistics.scm (r-knitr): Update to 1.21.
[propagated-inputs]: Add r-xfun.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus bf3aded0cf
gnu: r-markdown: Update to 0.9.
* gnu/packages/statistics.scm (r-markdown): Update to 0.9.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus eae93bd3f2
gnu: r-bh: Update to 1.69.0-1.
* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus b6e27673e6
gnu: r-pheatmap: Update to 1.0.12.
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus ca2bc7e037
gnu: r-mgcv: Update to 1.8-26.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 60f1bce09f
gnu: r-codetools: Update to 0.2-16.
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 3dbd87f504
gnu: r-class: Update to 7.3-15.
* gnu/packages/statistics.scm (r-class): Update to 7.3-15.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 35cf4874cc
gnu: r-survival: Update to 2.43-3.
* gnu/packages/statistics.scm (r-survival): Update to 2.43-3.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 11a36548d9
gnu: r-argparse: Update to 2.0.0.
* gnu/packages/cran.scm (r-argparse): Update to 2.0.0.
[propagated-inputs]: Add r-r6; remove r-proto.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus 527c605598
gnu: r-callr: Update to 3.1.1.
* gnu/packages/cran.scm (r-callr): Update to 3.1.1.
[propagated-inputs]: Remove r-base64enc.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus b140569e18
gnu: r-readxl: Update to 1.2.0.
* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 0aad198e2b
gnu: r-pracma: Update to 2.2.2.
* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 0e87bf0177
gnu: r-processx: Update to 3.2.1.
* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 2766d3436a
gnu: r-sjlabelled: Update to 1.0.16.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 813d9c51e3
gnu: r-broom: Update to 0.5.1.
* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 25c67ecfc6
gnu: Add r-generics.
* gnu/packages/cran.scm (r-generics): New variable.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 646e1ef059
gnu: r-curl: Update to 3.3.
* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus ef91530362
gnu: r-readr: Update to 1.3.1.
* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 48102ce123
gnu: r-mvabund: Update to 4.0.1.
* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus 04a18a81ae
gnu: r-writexl: Update to 1.1.
* gnu/packages/cran.scm (r-writexl): Update to 1.1.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus a2315c6702
gnu: r-jsonlite: Update to 1.6.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
2019-01-12 23:35:11 +01:00
Kei Kebreau ea600ff709
gnu: python-pillow: Update homepage.
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
2019-01-12 16:39:26 -05:00
Kei Kebreau acbf312573
gnu: python-pillow: Update to 5.4.0
* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
2019-01-12 16:38:36 -05:00
Ricardo Wurmus 146c6b62bf
gnu: Sort package modules in (gnu packages guile).
* gnu/packages/guile.scm: Sort list of gnu/packages modules.
2019-01-12 12:14:31 +01:00
Ricardo Wurmus 7d8baff97b
gnu: impressive: Update to 0.12.0.
* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
2019-01-12 12:14:31 +01:00
Ricardo Wurmus 24155bf40d
gnu: Move Java compression packages to new module.
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
2019-01-12 12:14:28 +01:00
guy fleury iteriteka 1704367719
gnu: Add Bochs.
* gnu/packages/virtualization.scm (bochs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-11 17:09:20 -05:00
Leo Famulari 81c64748ba
gnu: Stellarium: Update to 0.18.3.
* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
2019-01-11 17:07:55 -05:00
Pierre Neidhardt 1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found.
* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt e0fa641380
gnu: opendht: Use jsoncpp and restbed.
* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt 362fba83dd
gnu: Add restbed.
* gnu/packages/networking.scm (restbed): New variable.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt 50e1843b3a
gnu: libupnp: Update to 1.6.25.
* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
2019-01-11 19:48:00 +01:00
Hartmut Goebel 46b082f97f
gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.
Using LIBRARY_PATH was introduced in
16b8aff85b, but is wrong since
this variable is used by the compiler (gcc) at link time.

* gnu/packages/patches/kinit-kdeinit-libpath.patch: Change
  LIBRARY_PATH to KDEINIT5_LIBRARY_PATH.
* gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]:
  New field.
2019-01-11 16:35:52 +01:00
Jelle Licht 5a26f879c3
Revert "gnu: emacs-ghub: Update to 3.2.0."
This change should be applied once we update our magit package.

This reverts commit b96f0e6ff9.
2019-01-11 13:32:31 +01:00
Gabriel Hondet 88d7101798
gnu: Add emacs-general.
[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]]
* gnu/packages/emacs.scm (emacs-general): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-11 12:14:38 +01:00
Rutger Helling cb2ad4f508
gnu: wine-staging: Hard-code vulkan loader.
* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation.
* gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable
phase. Copy the real wine-preloader instead of the wrapped version.
2019-01-11 11:15:13 +01:00
Ricardo Wurmus e7c6bc45ed
gnu: jamm: Remove broken "build" phase.
* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase.
2019-01-11 06:08:43 +01:00
Leo Famulari adf0b482eb
gnu: gexiv2: Update to 0.10.10.
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10.
2019-01-10 18:45:41 -05:00
Ricardo Wurmus d4d9a1ece0
gnu: Update texlive packages.
* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
2019-01-10 22:43:09 +01:00
Kei Kebreau c954fe6622
gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882].
* gnu/packages/irc.scm (irssi): Update to 1.1.2.
2019-01-10 16:05:42 -05:00
Danny Milosavljevic ffcd282702
gnu: docker: Booby-trap "Command" and "LookPath" calls.
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Booby-trap "Command" and "LookPath" calls.
2019-01-10 21:29:53 +01:00
Pierre Neidhardt 6a6e5d84da
gnu: opendht: Update to 1.8.1.
* gnu/packages/crypto.scm (opendht): Update to 1.8.1.
[source]: Remove snippet that deletes argon2, which is no longer bundled.
[arguments]: Add "--with-argon2" to use system argon2.
[license]: Update to GPLv3+ following the README and source headers.
2019-01-10 21:09:06 +01:00
Pierre Neidhardt 6fe6840dab
gnu: Add libsecp256k1.
* gnu/packages/crypto.scm (libsecp256k1): New variable.
2019-01-10 21:09:06 +01:00
Pierre Neidhardt 35ac66eec1
gnu: crypto++: Update to 8.0.0.
* gnu/packages/crypto.scm (crypto++): Update to 8.0.0.
[arguments]: Build shared library.
[arguments]: Generate .pc file.
2019-01-10 21:09:06 +01:00
Nam Nguyen dbd346ae88
gnu: sct: Correct license.
* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:23 +01:00
Tim Gesthuizen 7d4b3e1e2b
gnu: Add pwsafe
* gnu/packages/password-utils.scm (pwsafe): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-10 14:59:22 +01:00
Rutger Helling 67ff2bdf61
gnu: vulkan-headers: Update to 1.1.97.
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.97.
[source]: Use git-fetch.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
[source]: Use git-fetch.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
[source]: Use git-fetch.
2019-01-10 11:44:54 +01:00
Rutger Helling 394207c1ee
gnu: Add missing copyright line.
* gnu/packages/video.scm: Add missing copyright line for commit 20b4aa6.
2019-01-10 08:59:44 +01:00
Rutger Helling 1d591432c7
gnu: wlstream: Fix indentation.
* gnu/packages/video.scm (wlstream): Fix indentation.
2019-01-10 08:53:36 +01:00
Rutger Helling 20b4aa6bab
gnu: Add wlstream.
* gnu/packages/video.scm (wlstream): New variable.
2019-01-10 08:41:03 +01:00
Rutger Helling 1f61cc102e
gnu: ffmpeg: Add libdrm support.
* gnu/packages/video.scm (ffmpeg): Add libdrm support.
2019-01-10 08:20:39 +01:00
Danny Milosavljevic 6b6a25d4d2
gnu: docker: Fix more paths.
* gnu/packages/docker.scm (docker)[inputs]: Add dbus, git.
[arguments]<#:phases>[patch-paths]: Use them.
2019-01-10 05:40:53 +01:00
Mark H Weaver 60893e5c84
gnu: linux-libre: Update to 4.20.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.1.
(%linux-libre-hash): Update hash.
2019-01-09 23:00:07 -05:00
Mark H Weaver f7ed0b1db5
gnu: linux-libre@4.19: Update to 4.19.14.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.14.
(%linux-libre-4.19-hash): Update hash.
2019-01-09 23:00:05 -05:00
Mark H Weaver 166c6ad39c
gnu: linux-libre@4.14: Update to 4.14.92.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.92.
(%linux-libre-4.14-hash): Update hash.
2019-01-09 23:00:03 -05:00
Mark H Weaver c37f52e3be
gnu: linux-libre@4.9: Update to 4.9.149.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.149.
2019-01-09 23:00:00 -05:00
Mark H Weaver 28f6b27543
gnu: linux-libre: Enable pressure stall information.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Enable CONFIG_PSI.
2019-01-09 22:59:58 -05:00
Danny Milosavljevic 8cd958608c
gnu: docker: Disable tests requiring elevated permissions.
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[delete-failing-tests]:
Disable tests requiring elevated permissions.
2019-01-10 04:46:29 +01:00
Danny Milosavljevic 8b487bf84f
gnu: containerd: Fix more paths.
* gnu/packages/docker.scm (containerd)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:34:57 +01:00
Danny Milosavljevic 58adcaa19f
gnu: docker: Fix more paths.
* gnu/packages/docker.scm (docker)[inputs]: Add util-linux.
[arguments]<#:phases>[patch-paths]: Fix more paths.
2019-01-10 04:33:47 +01:00
Danny Milosavljevic 65a7e35cb5
gnu: docker: Substitute LookPath of literals generally.
* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]:
Substitute LookPath of literals generally.
2019-01-10 03:12:32 +01:00
Danny Milosavljevic e9b316453e
gnu: Add docker-cli.
* gnu/packages/docker.scm (docker-cli): New variable.
2019-01-10 03:01:12 +01:00
Danny Milosavljevic f87ea24a82
gnu: Add docker.
* gnu/packages/docker.scm (docker): New variable.
* gnu/packages/patches/docker-engine-test-noinstall.patch: New file.
* gnu/packages/patches/docker-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-01-10 02:49:14 +01:00