4cd386afae
linux-modules: Factorize 'missing-modules'.
...
* gnu/build/linux-modules.scm (missing-modules): New procedure.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Use it.
2019-03-13 23:12:43 +01:00
59e8044588
Remove traces of "GuixSD".
...
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Remove
mentions of "GuixSD".
* gnu/bootloader/grub.scm (install-grub-efi): Likewise.
* gnu/build/vm.scm (make-iso9660-image): Change default #:volume-id to
"Guix_image".
(initialize-hard-disk): Search for the "Guix_image" label.
* gnu/ci.scm (system-test-jobs, tarball-jobs): Remove "GuixSD".
* gnu/installer/newt/welcome.scm (run-welcome-page): Likewise.
* gnu/packages/audio.scm (supercollider)[description]: Likewise.
* gnu/packages/curl.scm (curl): Likewise.
* gnu/packages/emacs.scm (emacs): Likewise.
* gnu/packages/gnome.scm (network-manager): Likewise.
* gnu/packages/julia.scm (julia): Likewise.
* gnu/packages/linux.scm (alsa-plugins): Likewise.
(powertop, wireless-regdb): Likewise.
* gnu/packages/package-management.scm (guix): Likewise.
* gnu/packages/polkit.scm (polkit): Likewise.
* gnu/packages/tex.scm (texlive-bin): Likewise.
* gnu/services/base.scm (file-systems->fstab): Likewise.
* gnu/services/cups.scm (%cups-activation): Likewise.
* gnu/services/mail.scm (%dovecot-activation): Likewise.
* gnu/services/messaging.scm (prosody-configuration)[log]: Likewise.
* gnu/system/examples/vm-image.tmpl (vm-image-motd): Likewise.
* gnu/system/install.scm (installation-os)[file-systems]: Change root
file system label to "Guix_image".
* gnu/system/mapped-devices.scm (check-device-initrd-modules):
Remove "GuixSD".
* gnu/system/vm.scm (system-docker-image): Likewise.
(system-disk-image)[root-label]: Change to "Guix_image".
* gnu/tests/install.scm (run-install): Remove "GuixSD".
* guix/modules.scm (guix-module-name?): Likewise.
* nix/libstore/optimise-store.cc: Likewise.
2019-03-13 23:12:43 +01:00
13f62aef2d
maint: Change Guix System file names from guixsd-*.
...
* Makefile.am (GUIXSD_SUPPORTED_SYSTEMS): Rename to...
(GUIX_SYSTEM_SUPPORTED_SYSTEMS): ... this.
(GUIXSD_VM_SYSTEMS): Rename to...
(GUIX_SYSTEM_VM_SYSTEMS): ... this.
(GUIXSD_IMAGE_BASE): Rename to...
(GUIX_SYSTEM_IMAGE_BASE): ... this. Change "guixsd-" to "guix-system-".
(GUIXSD_VM_IMAGE_BASE): Rename to...
(GUIX_SYSTEM_VM_IMAGE_BASE): ... this. Change "guixsd-" to
"guix-system-".
(release): Adjust accordingly.
* doc/guix.texi (USB Stick and DVD Installation)
(Installing Guix in a VM, Invoking guix system)
(Running Guix in a VM): Adjust file names accordingly.
2019-03-13 23:12:43 +01:00
fd4c7a098a
gnu: Add python-velocyto.
...
* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
2019-03-13 22:48:53 +01:00
55a0a3c853
gnu: python-loompy: Update to 2.0.17.
...
* gnu/packages/bioinformatics.scm (python-loompy): Update to 2.0.17.
[source]: Fetch via git.
[arguments]: Enable tests, replace "check" phase.
[propagated-inputs]: Add python-pandas.
[native-inputs]: Add python-pytest.
2019-03-13 22:48:52 +01:00
1f058eced3
gnu: Add emacs-dockerfile-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-dockerfile-mode): New variable.
2019-03-13 23:23:49 +03:00
18964a6029
gnu: Add emacs-docker.
...
* gnu/packages/emacs-xyz.scm (emacs-docker): New variable.
2019-03-13 23:23:49 +03:00
3899ae891c
gnu: Add emacs-docker-tramp.
...
* gnu/packages/emacs-xyz.scm (emacs-docker-tramp): New variable.
2019-03-13 23:23:49 +03:00
7757e6d8b9
gnu: python-numba: Update to 0.42.0.
...
* gnu/packages/python-xyz.scm (python-numba): Update to 0.42.0.
2019-03-13 20:44:25 +01:00
f932540773
gnu: python-llvmlite: Update to 0.27.1.
...
* gnu/packages/llvm.scm (python-llvmlite): Update to 0.27.1.
[inputs]: Update patch for custom LLVM variant.
2019-03-13 20:43:55 +01:00
6d37301bd5
gnu: Add python-on-guile.
...
* gnu/packages/guile-xyz.scm (python-on-guile): New variable.
2019-03-13 20:43:35 +01:00
8f05252862
gnu: guile-persist: Install go files to canonical directory.
...
* gnu/packages/guile-xyz.scm (guile-persist)[arguments]: Patch target
directory for go files in build phase "patch-prefix".
2019-03-13 20:42:23 +01:00
8318b3ed8c
gnu: guile-stis-parser: Install go files to canonical directory.
...
* gnu/packages/guile-xyz.scm (guile-stis-parser)[arguments]: Add build phase
"use-canonical-directory-for-go-files".
2019-03-13 20:41:41 +01:00
b9445d0b76
gnu: Add kaldi.
...
* gnu/packages/machine-learning.scm (kaldi): New variable.
2019-03-13 19:30:19 +01:00
a97796cd53
gnu: Add r-valr.
...
* gnu/packages/cran.scm (r-valr): New variable.
2019-03-13 17:19:58 +01:00
4291f36a22
gnu: Add r-linnorm.
...
* gnu/packages/bioconductor.scm (r-linnorm): New variable.
2019-03-13 17:13:21 +01:00
70daf82f28
gnu: Add python2-argparse.
...
* gnu/packages/python-xyz.scm (python2-argparse): New variable.
2019-03-13 17:11:09 +01:00
3942bf5e4c
gnu: Add r-apcluster.
...
* gnu/packages/cran.scm (r-apcluster): New variable.
2019-03-13 17:10:53 +01:00
51df43408b
gnu: Add r-gmodels.
...
* gnu/packages/cran.scm (r-gmodels): New variable.
2019-03-13 17:10:41 +01:00
0b5d12ccdf
gnu: Add tetoolkit.
...
* gnu/packages/bioinformatics.scm (tetoolkit): New variable.
2019-03-13 15:14:10 +01:00
984a8aa644
gnu: Add r-irkernel.
...
* gnu/packages/cran.scm (r-irkernel): New variable.
2019-03-13 14:26:45 +01:00
664dedd524
gnu: Add r-irdisplay.
...
* gnu/packages/cran.scm (r-irdisplay): New variable.
2019-03-13 14:26:34 +01:00
d17186d626
gnu: Add r-repr.
...
* gnu/packages/cran.scm (r-repr): New variable.
2019-03-13 14:26:25 +01:00
f313baf0c8
gnu: Add r-pbdzmq.
...
* gnu/packages/cran.scm (r-pbdzmq): New variable.
2019-03-13 14:26:08 +01:00
9475a248fc
gnu: Add r-illuminahumanmethylationepicmanifest.
...
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest):
New variable.
2019-03-13 13:49:20 +01:00
09605cb2d1
gnu: Add r-lumi.
...
* gnu/packages/bioconductor.scm (r-lumi): New variable.
2019-03-13 13:35:40 +01:00
5ec5ba0272
gnu: Add r-methylumi.
...
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
2019-03-13 13:35:33 +01:00
0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19.
...
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
2019-03-13 13:35:18 +01:00
86fded86c2
gnu: portaudio: Build position independent code and install more headers.
...
* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and
initialize libtool in new build phase "build-only-position-independent-code";
install extra header in new build phase "install-missing-headers".
2019-03-13 13:19:06 +01:00
0fbaf1956b
gnu: Add r-minfi.
...
* gnu/packages/bioconductor.scm (r-minfi): New variable.
2019-03-13 13:17:52 +01:00
34a24f95ec
gnu: Add r-bumphunter.
...
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
2019-03-13 13:17:52 +01:00
f4eac09653
gnu: Add r-siggenes.
...
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
2019-03-13 13:17:52 +01:00
eed6ff0358
gnu: Add r-illuminaio.
...
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
2019-03-13 13:17:52 +01:00
f9201d6704
gnu: Add r-geoquery.
...
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
2019-03-13 13:17:52 +01:00
f088775799
gnu: Add r-scone.
...
* gnu/packages/bioconductor.scm (r-scone): New variable.
2019-03-13 13:17:52 +01:00
b409c3570f
gnu: Add r-scdd.
...
* gnu/packages/bioconductor.scm (r-scdd): New variable.
2019-03-13 13:17:52 +01:00
6213e44185
gnu: Add r-noiseq.
...
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
2019-03-13 13:17:52 +01:00
2d7627cfff
gnu: Add r-monocle.
...
* gnu/packages/bioconductor.scm (r-monocle): New variable.
2019-03-13 13:17:52 +01:00
925fcdbb79
gnu: Add r-mast.
...
* gnu/packages/bioconductor.scm (r-mast): New variable.
2019-03-13 13:17:52 +01:00
251e08301a
gnu: Add r-icobra.
...
* gnu/packages/bioconductor.scm (r-icobra): New variable.
2019-03-13 13:17:52 +01:00
648dbd2702
gnu: Add r-beanplot.
...
* gnu/packages/cran.scm (r-beanplot): New variable.
2019-03-13 13:17:52 +01:00
026dd77c63
gnu: Add r-nor1mix.
...
* gnu/packages/cran.scm (r-nor1mix): New variable.
2019-03-13 13:17:51 +01:00
30f53ec86d
gnu: Add r-ggextra.
...
* gnu/packages/cran.scm (r-ggextra): New variable.
2019-03-13 13:17:51 +01:00
c27927dbf5
gnu: Add r-colourpicker.
...
* gnu/packages/cran.scm (r-colourpicker): New variable.
2019-03-13 13:17:51 +01:00
5146a24ece
gnu: Add r-shinyjs.
...
* gnu/packages/cran.scm (r-shinyjs): New variable.
2019-03-13 13:17:51 +01:00
849350fbce
gnu: Add r-shinybs.
...
* gnu/packages/cran.scm (r-shinybs): New variable.
2019-03-13 13:17:51 +01:00
704de8f5ee
gnu: Add r-ihw.
...
* gnu/packages/bioconductor.scm (r-ihw): New variable.
2019-03-13 13:17:51 +01:00
2cb71d81a4
gnu: Add r-lpsymphony.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
2019-03-13 13:17:51 +01:00
3087a2f37b
gnu: Add r-ebseq.
...
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
2019-03-13 13:17:51 +01:00
7ed869f796
gnu: Add r-nbpseq.
...
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
2019-03-13 13:17:51 +01:00
Ludovic Courtès