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33623 Commits

Author SHA1 Message Date
Ricardo Wurmus 09605cb2d1
gnu: Add r-lumi. 
* gnu/packages/bioconductor.scm (r-lumi): New variable.
 2019-03-13 13:35:40 +01:00
Ricardo Wurmus 5ec5ba0272
gnu: Add r-methylumi. 
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
 2019-03-13 13:35:33 +01:00
Ricardo Wurmus 0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
 2019-03-13 13:35:18 +01:00
Ricardo Wurmus 86fded86c2
gnu: portaudio: Build position independent code and install more headers. 
* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and
initialize libtool in new build phase "build-only-position-independent-code";
install extra header in new build phase "install-missing-headers".
 2019-03-13 13:19:06 +01:00
Ricardo Wurmus 0fbaf1956b
gnu: Add r-minfi. 
* gnu/packages/bioconductor.scm (r-minfi): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 34a24f95ec
gnu: Add r-bumphunter. 
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f4eac09653
gnu: Add r-siggenes. 
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus eed6ff0358
gnu: Add r-illuminaio. 
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f9201d6704
gnu: Add r-geoquery. 
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f088775799
gnu: Add r-scone. 
* gnu/packages/bioconductor.scm (r-scone): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus b409c3570f
gnu: Add r-scdd. 
* gnu/packages/bioconductor.scm (r-scdd): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 6213e44185
gnu: Add r-noiseq. 
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 2d7627cfff
gnu: Add r-monocle. 
* gnu/packages/bioconductor.scm (r-monocle): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 925fcdbb79
gnu: Add r-mast. 
* gnu/packages/bioconductor.scm (r-mast): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 251e08301a
gnu: Add r-icobra. 
* gnu/packages/bioconductor.scm (r-icobra): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 648dbd2702
gnu: Add r-beanplot. 
* gnu/packages/cran.scm (r-beanplot): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 026dd77c63
gnu: Add r-nor1mix. 
* gnu/packages/cran.scm (r-nor1mix): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 30f53ec86d
gnu: Add r-ggextra. 
* gnu/packages/cran.scm (r-ggextra): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus c27927dbf5
gnu: Add r-colourpicker. 
* gnu/packages/cran.scm (r-colourpicker): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 5146a24ece
gnu: Add r-shinyjs. 
* gnu/packages/cran.scm (r-shinyjs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 849350fbce
gnu: Add r-shinybs. 
* gnu/packages/cran.scm (r-shinybs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 704de8f5ee
gnu: Add r-ihw. 
* gnu/packages/bioconductor.scm (r-ihw): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 2cb71d81a4
gnu: Add r-lpsymphony. 
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 3087a2f37b
gnu: Add r-ebseq. 
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 7ed869f796
gnu: Add r-nbpseq. 
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
 2019-03-13 13:17:51 +01:00
Nicolas Goaziou 2b6ab17f7d
gnu: wireshark: Update to 3.0.0. 
* gnu/packages/networking.scm (wireshark): Update to 3.0.0.
 2019-03-13 12:31:13 +01:00
Tomáš Čech 77f3d30364
gnu: python-py3status: Update to 3.16. 
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.16.
 2019-03-13 10:06:19 +01:00
Jack Hill 2f041a4cef
gnu: r-minpack-lm: Fix typo in description. 
* gnu/packages/cran.scm (r-minpack-lm)[description]: Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-13 00:37:11 -04:00
Nicolas Goaziou 0d5101c3a3
gnu: rosegarden: Update to 18.12. 
* gnu/packages/music.scm (rosegarden): Update to 18.12.
[arguments]: Remove unused flag.
 2019-03-12 23:58:52 +01:00
Nicolas Goaziou a269c89457
gnu: musescore: Update to 3.0.5. 
* gnu/packages/music.scm (musescore): Update to 3.0.5.
 2019-03-12 23:58:52 +01:00
Ludovic Courtès c9c51ac39a
Revert "packages: 'package-input-rewriting' can take a promise." 
This reverts commit 7d2be1277b, which
turned out to be unhelpful for the problem at hand:

  https://lists.gnu.org/archive/html/guix-devel/2019-01/msg00486.html
 2019-03-12 23:51:32 +01:00
Ricardo Wurmus 29e76f0722
gnu: guile-stis-parser: Override source file name. 
* gnu/packages/guile-xyz.scm (guile-stis-parser)[source]: Provide file name
for git checkout.
 2019-03-12 22:48:40 +01:00
Ricardo Wurmus 173c99601a
gnu: Add r-deds. 
* gnu/packages/bioconductor.scm (r-deds): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 5570804a69
gnu: Add r-zim. 
* gnu/packages/cran.scm (r-zim): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus be0777ba86
gnu: Add r-penalized. 
* gnu/packages/cran.scm (r-penalized): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4d1f19e02c
gnu: Add r-nonnest2. 
* gnu/packages/cran.scm (r-nonnest2): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus ca3f13704a
gnu: Add r-lavaan. 
* gnu/packages/cran.scm (r-lavaan): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus e8be5a0098
gnu: Add r-pbivnorm. 
* gnu/packages/cran.scm (r-pbivnorm): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 9e2ff342aa
gnu: Add r-msir. 
* gnu/packages/cran.scm (r-msir): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 01fe44cbdc
gnu: Add r-moments. 
* gnu/packages/cran.scm (r-moments): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4fd994432f
gnu: Add r-minpack-lm. 
* gnu/packages/cran.scm (r-minpack-lm): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 061a4b6850
gnu: Add r-gamlss-dist. 
* gnu/packages/cran.scm (r-gamlss-dist): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus c60e3e10f3
gnu: Add r-drimpute. 
* gnu/packages/cran.scm (r-drimpute): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5f673e2c1c
gnu: Add r-cobs. 
* gnu/packages/cran.scm (r-cobs): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5fde35b385
gnu: Add r-compositions. 
* gnu/packages/cran.scm (r-compositions): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 7d779142ab
gnu: Add r-rarpack. 
* gnu/packages/cran.scm (r-rarpack): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 262ab4b17c
gnu: Add r-tensora. 
* gnu/packages/cran.scm (r-tensora): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 8cd3f49d46
gnu: Add r-bayesm. 
* gnu/packages/cran.scm (r-bayesm): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 1901a53241
gnu: Add r-outliers. 
* gnu/packages/cran.scm (r-outliers): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 4af186a963
gnu: Add r-upsetr. 
* gnu/packages/cran.scm (r-upsetr): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus f3233beec5
gnu: Add r-blockmodeling. 
* gnu/packages/cran.scm (r-blockmodeling): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus c691c607d7
gnu: Add r-dorng. 
* gnu/packages/cran.scm (r-dorng): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 4dc2ecc279
gnu: r-qvalue: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-qvalue): Move from here...
* gnu/packages/bioconductor.scm (r-qvalue): ...to here.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 557a1089c6
gnu: Add r-hsmmsinglecell. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 12d73f9c3c
gnu: Add guile-persist. 
* gnu/packages/guile-xyz.scm (guile-persist): New variable.
 2019-03-12 22:47:56 +01:00
Oleg Pykhalov e80a809f1f
gnu: Add tmux-xpanes. 
* gnu/packages/tmux.scm (tmux-xpanes): New variable.
 2019-03-12 22:41:31 +03:00
Brian Leung 94a33ab899
gnu: Add emacs-eshell-bookmark. 
* gnu/packages/emacs-xyz.scm (emacs-eshell-bookmark): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-12 21:56:09 +03:00
Julien Lepiller 2ffec22eeb
gnu: python-pygit2: Update to 0.27.4. 
* gnu/packages/python-xyz.scm (python-pygit2): Update to 0.27.4.
(python-pygit2)[arguments]: Disable tests.
 2019-03-12 18:56:34 +01:00
Efraim Flashner 7458ceaca8
gnu: inxi-minimal: Declare source-file-name. 
* gnu/packages/admin.scm (inxi-minimal)[source]: Add missing field.
 2019-03-12 17:29:19 +02:00
Tobias Geerinckx-Rice 49fb2d0922
gnu: inxi-minimal: Update to 3.0.22-1. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.22-1.
 2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 17ab1e43a6
gnu: perl-anyevent: Update to 7.15. 
* gnu/packages/libevent.scm (perl-anyevent): Update to 7.15.
 2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 2f805e97f2
gnu: aide: Update to 0.16.1. 
* gnu/packages/admin.scm (aide): Update to 0.16.1.
 2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 737300be4b
gnu: aide: Move project home. 
* gnu/packages/admin.scm (aide)[source, home-page]: Update.
 2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice 8dbd8e426c
gnu: aspell-dict-it: Update to 2.4-20070901-0. 
* gnu/packages/aspell.scm (aspell-dict-it): Update to 2.4-20070901-0.
 2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice b4ed7c3e8d
gnu: libinput: Don't use NAME in source URI. 
* gnu/packages/freedesktop.scm (libinput)[source]: Hard-code NAME.
 2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice e3df159edc
gnu: geos: Update to 3.7.1. 
* gnu/packages/geo.scm (geos): Update to 3.7.1.
 2019-03-12 15:26:19 +01:00
Rutger Helling 47b3eed821
gnu: vulkan-headers: Update to 1.103. 
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.103.
* gnu/packages/vulkan.scm (vulkan-loader): Adjust version.
* gnu/packages/vulkan.scm (vulkan-tools): Adjust version.
 2019-03-12 11:20:41 +01:00
Pierre Neidhardt 75dabac633
gnu: Add emacs-lisp-extra-font-lock. 
* gnu/packages/emacs-xyz.scm (emacs-lisp-extra-font-lock): New variable.
 2019-03-12 09:28:01 +01:00
Pierre Neidhardt b6180f93bd
gnu: emacs-suggest: Update to 0.7. 
* gnu/packages/emacs-xyz.scm (emacs-suggest): Update to 0.7.
 2019-03-12 09:24:31 +01:00
Pierre Neidhardt a922b2aee2
gnu: emacs-helm: Update to 3.1. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.1.
 2019-03-12 08:06:50 +01:00
Tobias Geerinckx-Rice 2ee05bb9d4
gnu: freedink-engine: Update to 109.6. 
* gnu/packages/games.scm (freedink-engine): Update to 109.6.
 2019-03-12 02:22:37 +01:00
Tobias Geerinckx-Rice 98704a8133
gnu: libmanette: Update to 0.2.2. 
* gnu/packages/games.scm (libmanette): Update to 0.2.2.
 2019-03-12 02:22:37 +01:00
Tobias Geerinckx-Rice a554462123
gnu: kicad-symbols: Use GIT-FILE-NAME. 
* packages/engineering.scm (kicad-symbols)[source]: Use GIT-FILE-NAME.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 65bab0120b
gnu: kicad-symbols: Update to 5.0.2. 
* gnu/packages/engineering.scm (kicad-symbols): Update to 5.0.2.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice b13b7143d7
gnu: kicad: Don't use NAME in source URI. 
* gnu/packages/engineering.scm (kicad)[source]: Hard-code NAME.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 23df8f3578
gnu: kicad: Update to 5.0.2. 
* gnu/packages/engineering.scm (kicad): Update to 5.0.2.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 3d21f1ea0f
gnu: gtkwave: Update to 3.3.99. 
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.99.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 5cfe650b9d
gnu: python-sqlalchemy: Use HTTPS home page. 
* gnu/packages/databases.scm (python-sqlalchemy)[home-page]: Use HTTPS.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 6d04f694dc
gnu: python-sqlalchemy: Update to 1.3.1. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.1.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 96ec46047b
gnu: gcompris-qt: Update to 0.96. 
* gnu/packages/education.scm (gcompris-qt): Update to 0.96.
[inputs]: Add openssl.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 909404b571
gnu: python-sql: Update to 1.0.0. 
* gnu/packages/databases.scm (python-sql): Update to 1.0.0.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 99e690a59a
gnu: python-pyodbc: Update to 4.0.25. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.25.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 72b7de49b4
gnu: python-psycopg2: Update to 2.7.7. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.7.7.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice d49bdbca5c
gnu: perl-dbd-sqlite: Update to 1.62. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 49596a5413
gnu: perl-dbd-mysql: Update to 4.050. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 2f813be342
gnu: perl-sql-abstract: Update to 1.86. 
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 55f4282e0c
gnu: guile-colorized: Move project home. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source, home-page]: Update.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 1340ce2899
gnu: guile-colorized: Don't use unstable tarball. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-12 02:22:33 +01:00
Brian Leung 1bc24bbf00
gnu: Add emacs-debpaste. 
* gnu/packages/emacs-xyz.scm (emacs-debpaste): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Brian Leung 6f93b525d3
gnu: Add emacs-xml-rpc. 
* gnu/packages/emacs-xyz.scm (emacs-xml-rpc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Marius Bakke e440a75640
gnu: libxcomposite: Update to 0.4.5. 
* gnu/packages/xorg.scm (libxcomposite): Update to 0.4.5.
 2019-03-11 21:22:24 +01:00
Marius Bakke e1c6102907
gnu: libxcursor: Update to 1.2.0. 
* gnu/packages/xorg.scm (libxcursor): Update to 1.2.0.
 2019-03-11 21:22:01 +01:00
Marius Bakke 520ae432d4
gnu: util-linux: Update to 2.33.1. 
* gnu/packages/linux.scm (util-linux): Update to 2.33.1.
* gnu/packages/patches/util-linux-tests.patch: Skip one new test.
 2019-03-11 21:18:12 +01:00
Marius Bakke b0c1c9b314
gnu: libxdamage: Update to 1.1.5. 
* gnu/packages/xorg.scm (libxdamage): Update to 1.1.5.
 2019-03-11 21:18:12 +01:00
Marius Bakke d80dcf2bdd
gnu: python-coverage: Update to 4.5.3. 
* gnu/packages/check.scm (python-coverage): Update to 4.5.3.
 2019-03-11 21:18:12 +01:00
Marius Bakke cf82643647
gnu: coreutils: Update to 8.31. 
* gnu/packages/base.scm (coreutils): Update to 8.31.
[arguments]: Remove obsolete workaround.
 2019-03-11 21:18:07 +01:00
Rutger Helling 7959ccac3f
gnu: swaylock: Fix indentation. 
* gnu/packages/wm.scm (swaylock): Fix indentation.
 2019-03-11 20:31:30 +01:00
Rutger Helling b0805973cd
gnu: Add swaylock. 
* gnu/packages/wm.scm (swaylock): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling 06ae5efcf3
gnu: Add swayidle. 
* gnu/packages/wm.scm (swayidle): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling 2ff844f090
gnu: Add sway. 
* gnu/packages/wm.scm (sway): New variable.
 2019-03-11 20:28:41 +01:00