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40993 Commits

Author SHA1 Message Date
Ricardo Wurmus 8318b3ed8c
gnu: guile-stis-parser: Install go files to canonical directory. 
* gnu/packages/guile-xyz.scm (guile-stis-parser)[arguments]: Add build phase
"use-canonical-directory-for-go-files".
 2019-03-13 20:41:41 +01:00
Ricardo Wurmus b9445d0b76
gnu: Add kaldi. 
* gnu/packages/machine-learning.scm (kaldi): New variable.
 2019-03-13 19:30:19 +01:00
Ricardo Wurmus a97796cd53
gnu: Add r-valr. 
* gnu/packages/cran.scm (r-valr): New variable.
 2019-03-13 17:19:58 +01:00
Ricardo Wurmus 4291f36a22
gnu: Add r-linnorm. 
* gnu/packages/bioconductor.scm (r-linnorm): New variable.
 2019-03-13 17:13:21 +01:00
Ricardo Wurmus 70daf82f28
gnu: Add python2-argparse. 
* gnu/packages/python-xyz.scm (python2-argparse): New variable.
 2019-03-13 17:11:09 +01:00
Ricardo Wurmus 3942bf5e4c
gnu: Add r-apcluster. 
* gnu/packages/cran.scm (r-apcluster): New variable.
 2019-03-13 17:10:53 +01:00
Ricardo Wurmus 51df43408b
gnu: Add r-gmodels. 
* gnu/packages/cran.scm (r-gmodels): New variable.
 2019-03-13 17:10:41 +01:00
Ricardo Wurmus 0b5d12ccdf
gnu: Add tetoolkit. 
* gnu/packages/bioinformatics.scm (tetoolkit): New variable.
 2019-03-13 15:14:10 +01:00
Ricardo Wurmus 984a8aa644
gnu: Add r-irkernel. 
* gnu/packages/cran.scm (r-irkernel): New variable.
 2019-03-13 14:26:45 +01:00
Ricardo Wurmus 664dedd524
gnu: Add r-irdisplay. 
* gnu/packages/cran.scm (r-irdisplay): New variable.
 2019-03-13 14:26:34 +01:00
Ricardo Wurmus d17186d626
gnu: Add r-repr. 
* gnu/packages/cran.scm (r-repr): New variable.
 2019-03-13 14:26:25 +01:00
Ricardo Wurmus f313baf0c8
gnu: Add r-pbdzmq. 
* gnu/packages/cran.scm (r-pbdzmq): New variable.
 2019-03-13 14:26:08 +01:00
Ricardo Wurmus 9475a248fc
gnu: Add r-illuminahumanmethylationepicmanifest. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest):
New variable.
 2019-03-13 13:49:20 +01:00
Ricardo Wurmus 09605cb2d1
gnu: Add r-lumi. 
* gnu/packages/bioconductor.scm (r-lumi): New variable.
 2019-03-13 13:35:40 +01:00
Ricardo Wurmus 5ec5ba0272
gnu: Add r-methylumi. 
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
 2019-03-13 13:35:33 +01:00
Ricardo Wurmus 0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
 2019-03-13 13:35:18 +01:00
Ricardo Wurmus 86fded86c2
gnu: portaudio: Build position independent code and install more headers. 
* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and
initialize libtool in new build phase "build-only-position-independent-code";
install extra header in new build phase "install-missing-headers".
 2019-03-13 13:19:06 +01:00
Ricardo Wurmus 0fbaf1956b
gnu: Add r-minfi. 
* gnu/packages/bioconductor.scm (r-minfi): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 34a24f95ec
gnu: Add r-bumphunter. 
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f4eac09653
gnu: Add r-siggenes. 
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus eed6ff0358
gnu: Add r-illuminaio. 
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f9201d6704
gnu: Add r-geoquery. 
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f088775799
gnu: Add r-scone. 
* gnu/packages/bioconductor.scm (r-scone): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus b409c3570f
gnu: Add r-scdd. 
* gnu/packages/bioconductor.scm (r-scdd): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 6213e44185
gnu: Add r-noiseq. 
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 2d7627cfff
gnu: Add r-monocle. 
* gnu/packages/bioconductor.scm (r-monocle): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 925fcdbb79
gnu: Add r-mast. 
* gnu/packages/bioconductor.scm (r-mast): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 251e08301a
gnu: Add r-icobra. 
* gnu/packages/bioconductor.scm (r-icobra): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 648dbd2702
gnu: Add r-beanplot. 
* gnu/packages/cran.scm (r-beanplot): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 026dd77c63
gnu: Add r-nor1mix. 
* gnu/packages/cran.scm (r-nor1mix): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 30f53ec86d
gnu: Add r-ggextra. 
* gnu/packages/cran.scm (r-ggextra): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus c27927dbf5
gnu: Add r-colourpicker. 
* gnu/packages/cran.scm (r-colourpicker): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 5146a24ece
gnu: Add r-shinyjs. 
* gnu/packages/cran.scm (r-shinyjs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 849350fbce
gnu: Add r-shinybs. 
* gnu/packages/cran.scm (r-shinybs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 704de8f5ee
gnu: Add r-ihw. 
* gnu/packages/bioconductor.scm (r-ihw): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 2cb71d81a4
gnu: Add r-lpsymphony. 
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 3087a2f37b
gnu: Add r-ebseq. 
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 7ed869f796
gnu: Add r-nbpseq. 
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
 2019-03-13 13:17:51 +01:00
Nicolas Goaziou 2b6ab17f7d
gnu: wireshark: Update to 3.0.0. 
* gnu/packages/networking.scm (wireshark): Update to 3.0.0.
 2019-03-13 12:31:13 +01:00
Tomáš Čech 77f3d30364
gnu: python-py3status: Update to 3.16. 
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.16.
 2019-03-13 10:06:19 +01:00
Jack Hill 2f041a4cef
gnu: r-minpack-lm: Fix typo in description. 
* gnu/packages/cran.scm (r-minpack-lm)[description]: Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-13 00:37:11 -04:00
Nicolas Goaziou 0d5101c3a3
gnu: rosegarden: Update to 18.12. 
* gnu/packages/music.scm (rosegarden): Update to 18.12.
[arguments]: Remove unused flag.
 2019-03-12 23:58:52 +01:00
Nicolas Goaziou a269c89457
gnu: musescore: Update to 3.0.5. 
* gnu/packages/music.scm (musescore): Update to 3.0.5.
 2019-03-12 23:58:52 +01:00
Ludovic Courtès 3f4f2ee404
describe: 'package-path-entries' no longer includes the "guix" entry. 
Fixes <https://bugs.gnu.org/34833>
Reported by mikadoZero <mikadozero@yandex.com>.

By returning the "guix" entry, we were then adding it to
%PACKAGE-MODULE-PATH, causing the discovery code to scan the whole tree,
including gnu/installer modules, which would in turn lead to warnings.
Regression introduced in bfc9c33930.

* guix/describe.scm (package-path-entries): Use
'current-channel-entries', not 'current-profile-entries'.
 2019-03-12 23:51:32 +01:00
Ludovic Courtès c9c51ac39a
Revert "packages: 'package-input-rewriting' can take a promise." 
This reverts commit 7d2be1277b, which
turned out to be unhelpful for the problem at hand:

  https://lists.gnu.org/archive/html/guix-devel/2019-01/msg00486.html
 2019-03-12 23:51:32 +01:00
Ricardo Wurmus 29e76f0722
gnu: guile-stis-parser: Override source file name. 
* gnu/packages/guile-xyz.scm (guile-stis-parser)[source]: Provide file name
for git checkout.
 2019-03-12 22:48:40 +01:00
Ricardo Wurmus 173c99601a
gnu: Add r-deds. 
* gnu/packages/bioconductor.scm (r-deds): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 5570804a69
gnu: Add r-zim. 
* gnu/packages/cran.scm (r-zim): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus be0777ba86
gnu: Add r-penalized. 
* gnu/packages/cran.scm (r-penalized): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4d1f19e02c
gnu: Add r-nonnest2. 
* gnu/packages/cran.scm (r-nonnest2): New variable.
 2019-03-12 22:47:57 +01:00