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Author SHA1 Message Date
Meiyo Peng 4c3553ab41
gnu: libsysstat: Update to 0.4.2. 
* gnu/packages/lxqt.scm (libsysstat): Update to 0.4.2.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-14 16:47:17 +01:00
Meiyo Peng 9f87e52fbb
gnu: liblxqt: Update to 0.14.1. 
* gnu/packages/lxqt.scm (liblxqt): Update to 0.14.1.
[arguments]: Remove #:configure-flags.  Add 'patch-translations-dir' phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-14 16:47:17 +01:00
Meiyo Peng c1105c4bcf
gnu: libqtxdg: Update to 3.3.1. 
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.3.1.
[native-inputs]: Add lxqt-build-tools.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-14 16:47:17 +01:00
Meiyo Peng 5b7a354d72
gnu: lxqt-build-tools: Update to 0.6.0. 
* gnu/packages/lxqt.scm (lxqt-build-tools): Update to 0.6.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-14 16:47:17 +01:00
Meiyo Peng d1d8235e45
gnu: libfm: Update to 1.3.1. 
* gnu/packages/lxde.scm (libfm): Update to 1.3.1.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-14 16:47:17 +01:00
Meiyo Peng a436a4919b
gnu: menu-cache: Update to 1.1.0. 
* gnu/packages/lxde.scm (menu-cache): Update to 1.1.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-14 16:47:14 +01:00
Marius Bakke 8cc3983a4d
gnu: jasper: Update to 2.0.16. 
* gnu/packages/image.scm (jasper): Update to 2.0.16.
 2019-03-14 14:44:01 +01:00
Marius Bakke 22656b24d8
gnu: rapidjson: Update home page. 
* gnu/packages/web.scm (rapidjson)[source, home-page]: Follow redirected URL.
 2019-03-14 14:44:01 +01:00
Marius Bakke 84ff7821ff
gnu: samba: Update to 4.9.5. 
* gnu/packages/samba.scm (samba): Update to 4.9.5.
 2019-03-14 14:44:01 +01:00
Marius Bakke dd10c0adad
gnu: libzip: Update to 1.5.2. 
* gnu/packages/compression.scm (libzip): Update to 1.5.2.
 2019-03-14 14:44:00 +01:00
Marius Bakke 66fea0c4d9
gnu: libzip: Don't use NAME in source URI. 
* gnu/packages/compression.scm (libzip)[source](uri): Hard-code NAME.
 2019-03-14 14:44:00 +01:00
Marius Bakke 72663b4822
gnu: WebKitGTK: Update to 2.24.0. 
* gnu/packages/webkit.scm (webkitgtk-2.22): Rename to ...
(webkitgtk-2.24): ... this.  Update to 2.24.0.
[inputs]: Add OPENJPEG.
* gnu/packages/gnome.scm (eolie, epiphany)[inputs]: Adjust accordingly.
* gnu/packages/web-browsers.scm (next-gtk-webkit)[inputs]: Likewise.
 2019-03-14 14:44:00 +01:00
Marius Bakke eccaa8bf8d
gnu: libsoup: Update to 2.66.0. 
* gnu/packages/gnome.scm (libsoup): Update to 2.66.0.
[build-system]: Change to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add GTK-DOC.
[inputs]: Add MIT-KRB5.  Move SQLITE and LIBPSL ...
[propagated-inputs]: ... here.
 2019-03-14 14:44:00 +01:00
Marius Bakke b165fe61dc
gnu: Kodi: Add Wayland variant. 
* gnu/packages/kodi.scm (kodi/wayland): New public variable.
 2019-03-14 14:44:00 +01:00
Marius Bakke 1f2e060148
gnu: Add waylandpp. 
* gnu/packages/freedesktop.scm (waylandpp): New public variable.
 2019-03-14 14:43:59 +01:00
Brett Gilio 209393a003
gnu: Add emacs-lsp-ui. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-ui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-14 11:42:06 +01:00
Brett Gilio 60adaae0cf
gnu: Add emacs-lsp-mode. 
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-14 11:40:07 +01:00
Brett Gilio 3490212a41
gnu: emacs-dash: Update to 2.15.0. 
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.15.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-14 11:37:35 +01:00
Vagrant Cascadian 8cd10b22f9
gnu: Update dtc to 1.5.0. 
* gnu/packages/bootloaders (dtc): Update to 1.5.0.
[native-inputs]: Add libyaml and pkg-config.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-14 11:02:40 +01:00
Meiyo Peng bb2f114de9
gnu: fish: Update to 3.0.2. 
* gnu/packages/shells.scm (fish): Update to 3.0.2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-14 11:01:11 +01:00
Nicolò Balzarotti 100f56024e
gnu: Add r-rematch2. 
* gnu/packages/cran.scm (r-rematch2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-14 10:54:49 +01:00
Leo Famulari 8a55c38915
gnu: w3m: Update to 0.5.3+git20190105. 
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20190105.
 2019-03-13 20:06:15 -04:00
Ludovic Courtès b94c80ff5d
linux-container: 'containerized-operating-system' removes "useless" services. 
Fixes <https://bugs.gnu.org/34211>.
Reported by Efraim Flashner <efraim@flashner.co.il>.

* gnu/system/linux-container.scm (containerized-operating-system)
[useless-services]: New variable.
Add 'services' field.
 2019-03-13 23:12:44 +01:00
Ludovic Courtès 82f29e5b4f
installer: network: Adjust wording. 
* gnu/installer/newt/network.scm (wait-service-online): Adjust wording
of the messages.
 2019-03-13 23:12:43 +01:00
Ludovic Courtès 4cd386afae
linux-modules: Factorize 'missing-modules'. 
* gnu/build/linux-modules.scm (missing-modules): New procedure.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Use it.
 2019-03-13 23:12:43 +01:00
Ludovic Courtès 59e8044588
Remove traces of "GuixSD". 
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Remove
mentions of "GuixSD".
* gnu/bootloader/grub.scm (install-grub-efi): Likewise.
* gnu/build/vm.scm (make-iso9660-image): Change default #:volume-id to
"Guix_image".
(initialize-hard-disk): Search for the "Guix_image" label.
* gnu/ci.scm (system-test-jobs, tarball-jobs): Remove "GuixSD".
* gnu/installer/newt/welcome.scm (run-welcome-page): Likewise.
* gnu/packages/audio.scm (supercollider)[description]: Likewise.
* gnu/packages/curl.scm (curl): Likewise.
* gnu/packages/emacs.scm (emacs): Likewise.
* gnu/packages/gnome.scm (network-manager): Likewise.
* gnu/packages/julia.scm (julia): Likewise.
* gnu/packages/linux.scm (alsa-plugins): Likewise.
(powertop, wireless-regdb): Likewise.
* gnu/packages/package-management.scm (guix): Likewise.
* gnu/packages/polkit.scm (polkit): Likewise.
* gnu/packages/tex.scm (texlive-bin): Likewise.
* gnu/services/base.scm (file-systems->fstab): Likewise.
* gnu/services/cups.scm (%cups-activation): Likewise.
* gnu/services/mail.scm (%dovecot-activation): Likewise.
* gnu/services/messaging.scm (prosody-configuration)[log]: Likewise.
* gnu/system/examples/vm-image.tmpl (vm-image-motd): Likewise.
* gnu/system/install.scm (installation-os)[file-systems]: Change root
file system label to "Guix_image".
* gnu/system/mapped-devices.scm (check-device-initrd-modules):
Remove "GuixSD".
* gnu/system/vm.scm (system-docker-image): Likewise.
(system-disk-image)[root-label]: Change to "Guix_image".
* gnu/tests/install.scm (run-install): Remove "GuixSD".
* guix/modules.scm (guix-module-name?): Likewise.
* nix/libstore/optimise-store.cc: Likewise.
 2019-03-13 23:12:43 +01:00
Ricardo Wurmus fd4c7a098a
gnu: Add python-velocyto. 
* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
 2019-03-13 22:48:53 +01:00
Ricardo Wurmus 55a0a3c853
gnu: python-loompy: Update to 2.0.17. 
* gnu/packages/bioinformatics.scm (python-loompy): Update to 2.0.17.
[source]: Fetch via git.
[arguments]: Enable tests, replace "check" phase.
[propagated-inputs]: Add python-pandas.
[native-inputs]: Add python-pytest.
 2019-03-13 22:48:52 +01:00
Oleg Pykhalov 1f058eced3
gnu: Add emacs-dockerfile-mode. 
* gnu/packages/emacs-xyz.scm (emacs-dockerfile-mode): New variable.
 2019-03-13 23:23:49 +03:00
Oleg Pykhalov 18964a6029
gnu: Add emacs-docker. 
* gnu/packages/emacs-xyz.scm (emacs-docker): New variable.
 2019-03-13 23:23:49 +03:00
Oleg Pykhalov 3899ae891c
gnu: Add emacs-docker-tramp. 
* gnu/packages/emacs-xyz.scm (emacs-docker-tramp): New variable.
 2019-03-13 23:23:49 +03:00
Ricardo Wurmus 7757e6d8b9
gnu: python-numba: Update to 0.42.0. 
* gnu/packages/python-xyz.scm (python-numba): Update to 0.42.0.
 2019-03-13 20:44:25 +01:00
Ricardo Wurmus f932540773
gnu: python-llvmlite: Update to 0.27.1. 
* gnu/packages/llvm.scm (python-llvmlite): Update to 0.27.1.
[inputs]: Update patch for custom LLVM variant.
 2019-03-13 20:43:55 +01:00
Ricardo Wurmus 6d37301bd5
gnu: Add python-on-guile. 
* gnu/packages/guile-xyz.scm (python-on-guile): New variable.
 2019-03-13 20:43:35 +01:00
Ricardo Wurmus 8f05252862
gnu: guile-persist: Install go files to canonical directory. 
* gnu/packages/guile-xyz.scm (guile-persist)[arguments]: Patch target
directory for go files in build phase "patch-prefix".
 2019-03-13 20:42:23 +01:00
Ricardo Wurmus 8318b3ed8c
gnu: guile-stis-parser: Install go files to canonical directory. 
* gnu/packages/guile-xyz.scm (guile-stis-parser)[arguments]: Add build phase
"use-canonical-directory-for-go-files".
 2019-03-13 20:41:41 +01:00
Ricardo Wurmus b9445d0b76
gnu: Add kaldi. 
* gnu/packages/machine-learning.scm (kaldi): New variable.
 2019-03-13 19:30:19 +01:00
Ricardo Wurmus a97796cd53
gnu: Add r-valr. 
* gnu/packages/cran.scm (r-valr): New variable.
 2019-03-13 17:19:58 +01:00
Ricardo Wurmus 4291f36a22
gnu: Add r-linnorm. 
* gnu/packages/bioconductor.scm (r-linnorm): New variable.
 2019-03-13 17:13:21 +01:00
Ricardo Wurmus 70daf82f28
gnu: Add python2-argparse. 
* gnu/packages/python-xyz.scm (python2-argparse): New variable.
 2019-03-13 17:11:09 +01:00
Ricardo Wurmus 3942bf5e4c
gnu: Add r-apcluster. 
* gnu/packages/cran.scm (r-apcluster): New variable.
 2019-03-13 17:10:53 +01:00
Ricardo Wurmus 51df43408b
gnu: Add r-gmodels. 
* gnu/packages/cran.scm (r-gmodels): New variable.
 2019-03-13 17:10:41 +01:00
Ricardo Wurmus 0b5d12ccdf
gnu: Add tetoolkit. 
* gnu/packages/bioinformatics.scm (tetoolkit): New variable.
 2019-03-13 15:14:10 +01:00
Ricardo Wurmus 984a8aa644
gnu: Add r-irkernel. 
* gnu/packages/cran.scm (r-irkernel): New variable.
 2019-03-13 14:26:45 +01:00
Ricardo Wurmus 664dedd524
gnu: Add r-irdisplay. 
* gnu/packages/cran.scm (r-irdisplay): New variable.
 2019-03-13 14:26:34 +01:00
Ricardo Wurmus d17186d626
gnu: Add r-repr. 
* gnu/packages/cran.scm (r-repr): New variable.
 2019-03-13 14:26:25 +01:00
Ricardo Wurmus f313baf0c8
gnu: Add r-pbdzmq. 
* gnu/packages/cran.scm (r-pbdzmq): New variable.
 2019-03-13 14:26:08 +01:00
Ricardo Wurmus 9475a248fc
gnu: Add r-illuminahumanmethylationepicmanifest. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest):
New variable.
 2019-03-13 13:49:20 +01:00
Ricardo Wurmus 09605cb2d1
gnu: Add r-lumi. 
* gnu/packages/bioconductor.scm (r-lumi): New variable.
 2019-03-13 13:35:40 +01:00
Ricardo Wurmus 5ec5ba0272
gnu: Add r-methylumi. 
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
 2019-03-13 13:35:33 +01:00
Ricardo Wurmus 0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
 2019-03-13 13:35:18 +01:00
Ricardo Wurmus 86fded86c2
gnu: portaudio: Build position independent code and install more headers. 
* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and
initialize libtool in new build phase "build-only-position-independent-code";
install extra header in new build phase "install-missing-headers".
 2019-03-13 13:19:06 +01:00
Ricardo Wurmus 0fbaf1956b
gnu: Add r-minfi. 
* gnu/packages/bioconductor.scm (r-minfi): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 34a24f95ec
gnu: Add r-bumphunter. 
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f4eac09653
gnu: Add r-siggenes. 
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus eed6ff0358
gnu: Add r-illuminaio. 
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f9201d6704
gnu: Add r-geoquery. 
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f088775799
gnu: Add r-scone. 
* gnu/packages/bioconductor.scm (r-scone): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus b409c3570f
gnu: Add r-scdd. 
* gnu/packages/bioconductor.scm (r-scdd): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 6213e44185
gnu: Add r-noiseq. 
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 2d7627cfff
gnu: Add r-monocle. 
* gnu/packages/bioconductor.scm (r-monocle): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 925fcdbb79
gnu: Add r-mast. 
* gnu/packages/bioconductor.scm (r-mast): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 251e08301a
gnu: Add r-icobra. 
* gnu/packages/bioconductor.scm (r-icobra): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 648dbd2702
gnu: Add r-beanplot. 
* gnu/packages/cran.scm (r-beanplot): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 026dd77c63
gnu: Add r-nor1mix. 
* gnu/packages/cran.scm (r-nor1mix): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 30f53ec86d
gnu: Add r-ggextra. 
* gnu/packages/cran.scm (r-ggextra): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus c27927dbf5
gnu: Add r-colourpicker. 
* gnu/packages/cran.scm (r-colourpicker): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 5146a24ece
gnu: Add r-shinyjs. 
* gnu/packages/cran.scm (r-shinyjs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 849350fbce
gnu: Add r-shinybs. 
* gnu/packages/cran.scm (r-shinybs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 704de8f5ee
gnu: Add r-ihw. 
* gnu/packages/bioconductor.scm (r-ihw): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 2cb71d81a4
gnu: Add r-lpsymphony. 
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 3087a2f37b
gnu: Add r-ebseq. 
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 7ed869f796
gnu: Add r-nbpseq. 
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
 2019-03-13 13:17:51 +01:00
Nicolas Goaziou 2b6ab17f7d
gnu: wireshark: Update to 3.0.0. 
* gnu/packages/networking.scm (wireshark): Update to 3.0.0.
 2019-03-13 12:31:13 +01:00
Tomáš Čech 77f3d30364
gnu: python-py3status: Update to 3.16. 
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.16.
 2019-03-13 10:06:19 +01:00
Jack Hill 2f041a4cef
gnu: r-minpack-lm: Fix typo in description. 
* gnu/packages/cran.scm (r-minpack-lm)[description]: Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-13 00:37:11 -04:00
Nicolas Goaziou 0d5101c3a3
gnu: rosegarden: Update to 18.12. 
* gnu/packages/music.scm (rosegarden): Update to 18.12.
[arguments]: Remove unused flag.
 2019-03-12 23:58:52 +01:00
Nicolas Goaziou a269c89457
gnu: musescore: Update to 3.0.5. 
* gnu/packages/music.scm (musescore): Update to 3.0.5.
 2019-03-12 23:58:52 +01:00
Ludovic Courtès c9c51ac39a
Revert "packages: 'package-input-rewriting' can take a promise." 
This reverts commit 7d2be1277b, which
turned out to be unhelpful for the problem at hand:

  https://lists.gnu.org/archive/html/guix-devel/2019-01/msg00486.html
 2019-03-12 23:51:32 +01:00
Ricardo Wurmus 29e76f0722
gnu: guile-stis-parser: Override source file name. 
* gnu/packages/guile-xyz.scm (guile-stis-parser)[source]: Provide file name
for git checkout.
 2019-03-12 22:48:40 +01:00
Ricardo Wurmus 173c99601a
gnu: Add r-deds. 
* gnu/packages/bioconductor.scm (r-deds): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 5570804a69
gnu: Add r-zim. 
* gnu/packages/cran.scm (r-zim): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus be0777ba86
gnu: Add r-penalized. 
* gnu/packages/cran.scm (r-penalized): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4d1f19e02c
gnu: Add r-nonnest2. 
* gnu/packages/cran.scm (r-nonnest2): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus ca3f13704a
gnu: Add r-lavaan. 
* gnu/packages/cran.scm (r-lavaan): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus e8be5a0098
gnu: Add r-pbivnorm. 
* gnu/packages/cran.scm (r-pbivnorm): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 9e2ff342aa
gnu: Add r-msir. 
* gnu/packages/cran.scm (r-msir): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 01fe44cbdc
gnu: Add r-moments. 
* gnu/packages/cran.scm (r-moments): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4fd994432f
gnu: Add r-minpack-lm. 
* gnu/packages/cran.scm (r-minpack-lm): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 061a4b6850
gnu: Add r-gamlss-dist. 
* gnu/packages/cran.scm (r-gamlss-dist): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus c60e3e10f3
gnu: Add r-drimpute. 
* gnu/packages/cran.scm (r-drimpute): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5f673e2c1c
gnu: Add r-cobs. 
* gnu/packages/cran.scm (r-cobs): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5fde35b385
gnu: Add r-compositions. 
* gnu/packages/cran.scm (r-compositions): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 7d779142ab
gnu: Add r-rarpack. 
* gnu/packages/cran.scm (r-rarpack): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 262ab4b17c
gnu: Add r-tensora. 
* gnu/packages/cran.scm (r-tensora): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 8cd3f49d46
gnu: Add r-bayesm. 
* gnu/packages/cran.scm (r-bayesm): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 1901a53241
gnu: Add r-outliers. 
* gnu/packages/cran.scm (r-outliers): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 4af186a963
gnu: Add r-upsetr. 
* gnu/packages/cran.scm (r-upsetr): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus f3233beec5
gnu: Add r-blockmodeling. 
* gnu/packages/cran.scm (r-blockmodeling): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus c691c607d7
gnu: Add r-dorng. 
* gnu/packages/cran.scm (r-dorng): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 4dc2ecc279
gnu: r-qvalue: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-qvalue): Move from here...
* gnu/packages/bioconductor.scm (r-qvalue): ...to here.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 557a1089c6
gnu: Add r-hsmmsinglecell. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 12d73f9c3c
gnu: Add guile-persist. 
* gnu/packages/guile-xyz.scm (guile-persist): New variable.
 2019-03-12 22:47:56 +01:00
Oleg Pykhalov e80a809f1f
gnu: Add tmux-xpanes. 
* gnu/packages/tmux.scm (tmux-xpanes): New variable.
 2019-03-12 22:41:31 +03:00
Brian Leung 94a33ab899
gnu: Add emacs-eshell-bookmark. 
* gnu/packages/emacs-xyz.scm (emacs-eshell-bookmark): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-12 21:56:09 +03:00
Julien Lepiller 2ffec22eeb
gnu: python-pygit2: Update to 0.27.4. 
* gnu/packages/python-xyz.scm (python-pygit2): Update to 0.27.4.
(python-pygit2)[arguments]: Disable tests.
 2019-03-12 18:56:34 +01:00
Efraim Flashner 7458ceaca8
gnu: inxi-minimal: Declare source-file-name. 
* gnu/packages/admin.scm (inxi-minimal)[source]: Add missing field.
 2019-03-12 17:29:19 +02:00
Tobias Geerinckx-Rice 49fb2d0922
gnu: inxi-minimal: Update to 3.0.22-1. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.22-1.
 2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 17ab1e43a6
gnu: perl-anyevent: Update to 7.15. 
* gnu/packages/libevent.scm (perl-anyevent): Update to 7.15.
 2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 2f805e97f2
gnu: aide: Update to 0.16.1. 
* gnu/packages/admin.scm (aide): Update to 0.16.1.
 2019-03-12 15:26:21 +01:00
Tobias Geerinckx-Rice 737300be4b
gnu: aide: Move project home. 
* gnu/packages/admin.scm (aide)[source, home-page]: Update.
 2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice 8dbd8e426c
gnu: aspell-dict-it: Update to 2.4-20070901-0. 
* gnu/packages/aspell.scm (aspell-dict-it): Update to 2.4-20070901-0.
 2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice b4ed7c3e8d
gnu: libinput: Don't use NAME in source URI. 
* gnu/packages/freedesktop.scm (libinput)[source]: Hard-code NAME.
 2019-03-12 15:26:20 +01:00
Tobias Geerinckx-Rice e3df159edc
gnu: geos: Update to 3.7.1. 
* gnu/packages/geo.scm (geos): Update to 3.7.1.
 2019-03-12 15:26:19 +01:00
Pierre Neidhardt 75dabac633
gnu: Add emacs-lisp-extra-font-lock. 
* gnu/packages/emacs-xyz.scm (emacs-lisp-extra-font-lock): New variable.
 2019-03-12 09:28:01 +01:00
Pierre Neidhardt b6180f93bd
gnu: emacs-suggest: Update to 0.7. 
* gnu/packages/emacs-xyz.scm (emacs-suggest): Update to 0.7.
 2019-03-12 09:24:31 +01:00
Pierre Neidhardt a922b2aee2
gnu: emacs-helm: Update to 3.1. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.1.
 2019-03-12 08:06:50 +01:00
Tobias Geerinckx-Rice 2ee05bb9d4
gnu: freedink-engine: Update to 109.6. 
* gnu/packages/games.scm (freedink-engine): Update to 109.6.
 2019-03-12 02:22:37 +01:00
Tobias Geerinckx-Rice 98704a8133
gnu: libmanette: Update to 0.2.2. 
* gnu/packages/games.scm (libmanette): Update to 0.2.2.
 2019-03-12 02:22:37 +01:00
Tobias Geerinckx-Rice a554462123
gnu: kicad-symbols: Use GIT-FILE-NAME. 
* packages/engineering.scm (kicad-symbols)[source]: Use GIT-FILE-NAME.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 65bab0120b
gnu: kicad-symbols: Update to 5.0.2. 
* gnu/packages/engineering.scm (kicad-symbols): Update to 5.0.2.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice b13b7143d7
gnu: kicad: Don't use NAME in source URI. 
* gnu/packages/engineering.scm (kicad)[source]: Hard-code NAME.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 23df8f3578
gnu: kicad: Update to 5.0.2. 
* gnu/packages/engineering.scm (kicad): Update to 5.0.2.
 2019-03-12 02:22:36 +01:00
Tobias Geerinckx-Rice 3d21f1ea0f
gnu: gtkwave: Update to 3.3.99. 
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.99.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 5cfe650b9d
gnu: python-sqlalchemy: Use HTTPS home page. 
* gnu/packages/databases.scm (python-sqlalchemy)[home-page]: Use HTTPS.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 6d04f694dc
gnu: python-sqlalchemy: Update to 1.3.1. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.1.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 96ec46047b
gnu: gcompris-qt: Update to 0.96. 
* gnu/packages/education.scm (gcompris-qt): Update to 0.96.
[inputs]: Add openssl.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice 909404b571
gnu: python-sql: Update to 1.0.0. 
* gnu/packages/databases.scm (python-sql): Update to 1.0.0.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 99e690a59a
gnu: python-pyodbc: Update to 4.0.25. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.25.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 72b7de49b4
gnu: python-psycopg2: Update to 2.7.7. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.7.7.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice d49bdbca5c
gnu: perl-dbd-sqlite: Update to 1.62. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice 49596a5413
gnu: perl-dbd-mysql: Update to 4.050. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 2f813be342
gnu: perl-sql-abstract: Update to 1.86. 
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 55f4282e0c
gnu: guile-colorized: Move project home. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source, home-page]: Update.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice 1340ce2899
gnu: guile-colorized: Don't use unstable tarball. 
* gnu/packages/guile-xyz.scm (guile-colorized)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-12 02:22:33 +01:00
Brian Leung 1bc24bbf00
gnu: Add emacs-debpaste. 
* gnu/packages/emacs-xyz.scm (emacs-debpaste): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Brian Leung 6f93b525d3
gnu: Add emacs-xml-rpc. 
* gnu/packages/emacs-xyz.scm (emacs-xml-rpc): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-11 23:12:26 +01:00
Ludovic Courtès bfc9c33930
packages: Add the channel .go files to the search path. 
Until now %LOAD-COMPILED-PATH would wrongfully contain:

  CHANNEL/share/guile/site/X.Y

for each channel, thereby ignoring all the .go files of channels.  This
fixes it so that %LOAD-COMPILED-PATH instead contains:

  CHANNEL/lib/guile/X.Y/site-ccache

* guix/describe.scm (current-channel-entries): New procedure.
(package-path-entries): Change to return the %LOAD-COMPILED-PATH entries
as a second value.
* gnu/packages.scm (%package-module-path): Expect two values from
'package-path-entries' and augment %LOAD-COMPILED-PATH accordingly.
 2019-03-11 23:12:26 +01:00
Ludovic Courtès 082c648d28
services: mate-desktop: Deprecate the 'mate-desktop-service' procedure. 
* gnu/services/desktop.scm (mate-desktop-service): Deprecate.
* doc/guix.texi (Desktop Services): Document 'mate-desktop-service-type'
and 'mate-desktop-configuration'.  Fix spelling of "Enlightenment".
 2019-03-11 23:12:26 +01:00
Ludovic Courtès 984a61624c
services: mate-desktop: Add default value. 
* gnu/services/desktop.scm (mate-desktop-service-type)[default-value]:
New field.
 2019-03-11 23:12:26 +01:00
Rutger Helling 7959ccac3f
gnu: swaylock: Fix indentation. 
* gnu/packages/wm.scm (swaylock): Fix indentation.
 2019-03-11 20:31:30 +01:00
Rutger Helling b0805973cd
gnu: Add swaylock. 
* gnu/packages/wm.scm (swaylock): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling 06ae5efcf3
gnu: Add swayidle. 
* gnu/packages/wm.scm (swayidle): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling 2ff844f090
gnu: Add sway. 
* gnu/packages/wm.scm (sway): New variable.
 2019-03-11 20:28:41 +01:00
Rutger Helling eea969cf8d
gnu: Add wlroots. 
* gnu/packages/wm.scm (wlroots): New variable.
 2019-03-11 20:28:41 +01:00
Pierre Neidhardt 684626763f
gnu: emacs-magit: Fix perl path in dedicated variable. 
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Do it.
 2019-03-11 19:01:49 +01:00
Pierre Neidhardt 842e66c573
gnu: Add emacs-lorem-ipsum. 
* gnu/packages/emacs-xyz.scm (emacs-lorem-ipsum): New variable.
 2019-03-11 18:46:25 +01:00
Oleg Pykhalov 34e3d028b9
gnu: emacs-json-reformat: Fix test. 
This patch deletes a test which tries to compare JSON objects order.

* gnu/packages/emacs-xyz.scm (emacs-json-reformat): Delete
'json-reformat-test:json-reformat-region' test.
 2019-03-11 19:52:39 +03:00
Ricardo Wurmus 4948c23677
gnu: r-with-tests: Update to 3.5.3. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.3.
 2019-03-11 15:25:27 +01:00
Tobias Geerinckx-Rice e445bd1607
gnu: s6-linux-utils: Update to 2.5.0.1. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.0.1.
 2019-03-11 13:25:15 +01:00
Tobias Geerinckx-Rice 8dc458bb18
gnu: s6-linux-init: Update to 0.4.0.1. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 0.4.0.1.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice b673d2d793
gnu: s6-portable-utils: Update to 2.2.1.3. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.1.3.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice 0953b09aa8
gnu: s6-rc: Update to 0.5.0.0. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.0.0.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice 8722fd43d4
gnu: s6-networking: Update to 2.3.0.4. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.0.4.
 2019-03-11 13:25:14 +01:00
Tobias Geerinckx-Rice ce3262e9a3
gnu: s6-dns: Update to 2.3.0.2. 
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.0.2.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 6954594d5c
gnu: s6: Update to 2.8.0.0. 
* gnu/packages/skarnet.scm (s6): Update to 2.8.0.0.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 5c9bf737c4
gnu: execline: Update to 2.5.1.0. 
* gnu/packages/skarnet.scm (execline): Update to 2.5.1.0.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice a699a81b84
gnu: skalibs: Update to 2.8.0.1. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.8.0.1.
 2019-03-11 13:25:13 +01:00
Tobias Geerinckx-Rice 5e5bd81843
gnu: picocom: Fix description. 
* gnu/packages/terminals.scm (picocom)[synopsis]: Shorten.
[description]: Properly introduce.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 33238b5520
gnu: picocom: Update to 3.1. 
* gnu/packages/terminals.scm (picocom): Update to 3.1.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 130c12c9b9
gnu: perl-image-exiftool: Update to 11.31. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.31.
 2019-03-11 13:25:12 +01:00
Tobias Geerinckx-Rice 0234f4af27
gnu: perl-image-exiftool: Add upstream URL. 
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Also download
from the home page.
 2019-03-11 13:25:11 +01:00
Mark H Weaver 3edd7a3f4c
gnu: linux-libre: Update to 5.0.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.1.
(%linux-libre-hash): Update hash.
 2019-03-11 07:14:58 -04:00
Mark H Weaver 32ede5bbf9
gnu: linux-libre@4.19: Update to 4.19.28. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.28.
(%linux-libre-4.19-hash): Update hash.
 2019-03-11 07:14:01 -04:00
Efraim Flashner 2206f23679
gnu: Add eternalterminal. 
* gnu/packages/terminals.scm (eternalterminal): New variable.
 2019-03-11 10:30:58 +02:00
Efraim Flashner a5c8460a6d
gnu: crawl: Build without SSE only on some architecures. 
This is a follow-up to b89284407f.

* gnu/packages/games.scm (crawl)[arguments]: Remove custom 'patch-flags
phase, add make-flag on non-x86* architectures to build without SSE.
 2019-03-11 10:06:29 +02:00
Tobias Geerinckx-Rice 93a72fa7c9
gnu: xvid: Update to 1.3.5. 
* gnu/packages/video.scm (xvid): Update to 1.3.5.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice d05c14dfc9
gnu: python-acme, certbot: Update to 0.32.0. 
* gnu/packages/tls.scm (python-acme): Update to 0.32.0.
(certbot)[source]: Update hash.
[native-inputs]: Replace python-nose with python-pytest.
[propagated-inputs]: Add python-cryptography.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice 4d34fe4681
gnu: avidemux: Update to 2.7.2. 
* gnu/packages/video.scm (avidemux): Update to 2.7.2.
[arguments]: Update version of included ffmpeg.
 2019-03-11 02:08:04 +01:00
Tobias Geerinckx-Rice 642de36b9e
gnu: avidemux: Factorise ffmpeg version. 
* gnu/packages/video.scm (avidemux)[arguments]: Move oft-repeated
hard-coded ffmpeg version number to a single let-bound variable.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 7d3ac6c08e
gnu: avidemux: Don't use NAME in source URI. 
* gnu/packages/video.scm (avidemux)[source]: Hard-code NAME.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 129294e748
gnu: youtube-dl: Update to 2019.03.09. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.09.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice 585be42f46
gnu: texmaker: Update to 5.0.3. 
* gnu/packages/tex.scm (texmaker): Update to 5.0.3.
 2019-03-11 02:08:03 +01:00
Tobias Geerinckx-Rice dbfb24824b
gnu: stunnel: Update to 5.50. 
* gnu/packages/web.scm (stunnel): Update to 5.50.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice a9644c5a49
gnu: you-get: Update to 0.4.1270. 
* gnu/packages/video.scm (you-get): Update to 0.4.1270.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice 266cd19eb9
gnu: nginx-documentation: Update to 2019-03-01-2345-7ef11708457e. 
* gnu/packages/web.scm (nginx-documentation): Update to 2019-03-01-2345-7ef11708457e.
[arguments]: Simplify substitution.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice fd46742dd2
gnu: nginx: Update to 1.15.9. 
* gnu/packages/web.scm (nginx): Update to 1.15.9.
 2019-03-11 02:08:02 +01:00
Tobias Geerinckx-Rice 0330d6b2bf
gnu: xf86-video-ati: Update to 19.0.0. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.0.
[source]: Re-indent.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice 77ad8ec4fc
gnu: xf86-video-amdgpu: Update to 19.0.0. 
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.0.
[source]: Re-indent.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice c170080689
gnu: console-setup: Update to 1.190. 
* gnu/packages/xorg.scm (console-setup): Update to 1.190.
 2019-03-11 02:08:01 +01:00
Tobias Geerinckx-Rice 0189045904
gnu: snd: Update to 19.2. 
* gnu/packages/audio.scm (snd): Update to 19.2.
 2019-03-11 02:08:00 +01:00
Ludovic Courtès 8b3ad455be
services: guix: Pre-compute the default ACL. 
This makes the first boot slightly faster.

* gnu/services/base.scm (not-config?): New procedure.
(hydra-key-authorization): Rewrite to pre-compute the default ACL, and
pre-compute it using (guix pki) directly.
 2019-03-10 23:41:33 +01:00
Ludovic Courtès 309d87c3aa
services: guix: Allocate build user UIDs in the system range. 
Until now we were allocating the UIDs of build users above 30000, which
is in "normal" user UID range.  This static allocation was unnecessary,
so this change lets the system allocate UIDs in the system range (below
1000).

* gnu/services/base.scm (guix-build-accounts): Remove #:first-uid, and
remove 'uid' field from 'user-account'.
 2019-03-10 23:41:33 +01:00
Ludovic Courtès 45fef894eb
gnu: gnome-shell: Avoid top-level reference to inkscape. 
Fixes <https://bugs.gnu.org/34806>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/gnome.scm (gnome-shell)[source](snippet): Remove
reference to INKSCAPE.  Instead, simply copy the SVG file to
data/theme.
[arguments]: Add 'convert-logo-to-png' phase.
[native-inputs]: Add INKSCAPE.
 2019-03-10 23:41:33 +01:00
Tobias Geerinckx-Rice 5ae5932b2f
gnu: ansible: Update to 2.7.8 [fixes CVE-2019-3828]. 
* gnu/packages/admin.scm (ansible): Update to 2.7.8.
 2019-03-10 23:00:08 +01:00
Marius Bakke 7fda7b8fad
gnu: pugixml: Build as shared library. 
* gnu/packages/patches/pugixml-versioned-libdir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (pugixml)[source](patches): New field.
[arguments]: Instruct the build system to create a shared rather than static
library.
[native-inputs]: Add PKG-CONFIG.
 2019-03-10 21:44:25 +01:00
Marius Bakke e2bdf60982
gnu: FileZilla: Update to 3.41.1. 
* gnu/packages/ftp.scm (filezilla): Update to 3.41.1.
 2019-03-10 21:44:25 +01:00
Marius Bakke 6324727770
gnu: pugixml is a regular input. 
* gnu/packages/emulators.scm (mame)[native-inputs]: Move PUGIXML ...
[inputs]: ... here.
* gnu/packages/ftp.scm (filezilla)[native-inputs, inputs]: Likewise.
 2019-03-10 21:44:25 +01:00
Oleg Pykhalov e44de1d2fb
services: zabbix-front-end: Show location in messages. 
* gnu/services/monitoring.scm (zabbix-front-end-config): Show location in
messages.
 2019-03-10 21:32:38 +03:00
Oleg Pykhalov d132d9f96b
services: configuration: Add '%location'. 
* gnu/services/configuration.scm (define-configuration): Add '%location'.
 2019-03-10 21:32:38 +03:00
Marius Bakke 41ce92501b
gnu: xfd: Update to 1.1.3. 
* gnu/packages/xorg.scm (xfd): Update to 1.1.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 06e3ed5d19
gnu: xprop: Update to 1.2.4. 
* gnu/packages/xorg.scm (xprop): Update to 1.2.4.
 2019-03-10 18:30:51 +01:00
Marius Bakke df8dbfb30b
gnu: notmuch: Update to 0.28.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.3.
 2019-03-10 18:30:51 +01:00
Marius Bakke 2c0cf9eec7
gnu: xapian: Update to 1.4.11. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.11.
 2019-03-10 18:30:51 +01:00
Marius Bakke 511930c294
gnu: libmspack: Update to 0.10.1. 
* gnu/packages/compression.scm (libmspack): Update to 0.10.1.
 2019-03-10 18:30:50 +01:00
Marius Bakke 755226e9c2
gnu: python-dask: Update to 1.1.4. 
* gnu/packages/python-xyz.scm (python-dask): Update to 1.1.4.
 2019-03-10 18:30:50 +01:00
Marius Bakke f1fff66be5
gnu: elogind: Update to 239.4. 
* gnu/packages/freedesktop.scm (elogind): Update to 239.4.
 2019-03-10 18:30:50 +01:00
Tobias Geerinckx-Rice 6845ab5204
gnu: Import (gnu packages image) in (gnu packages scanner). 
This is a follow-up to commit 10bd2889d2.

* gnu/packages/scanner.scm: #:use-module (gnu packages image).
 2019-03-10 17:12:16 +01:00
Tobias Geerinckx-Rice 10bd2889d2
gnu: sane-backends: Support PNG scanimage output. 
* gnu/packages/scanner.scm (sane-backends)[inputs]: Add libpng.
 2019-03-10 16:33:55 +01:00
Ricardo Wurmus ca32afacf9
gnu: Add btanks. 
* gnu/packages/games.scm (btanks): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus d7764d42e4
gnu: Add libsmpeg-with-sdl1. 
* gnu/packages/video.scm (libsmpeg-with-sdl1): New variable.
(libsmpeg)[version]: Change to 0.4.5-401.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 8ada024ba6
gnu: Add 4dtris. 
* gnu/packages/games.scm (4dtris): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus c06709b8a4
gnu: Add slingshot. 
* gnu/packages/games.scm (slingshot): New variable.
 2019-03-10 14:04:28 +01:00
Ricardo Wurmus 05487ed8e6
gnu: scons: Update to 3.0.4. 
* gnu/packages/python-xyz.scm (scons): Update to 3.0.4.
[arguments]: Remove second instance of "imp.load_module" (bug 34236).
 2019-03-10 14:04:28 +01:00
Tobias Geerinckx-Rice 4eb57ca883
gnu: Add opensmtpd-next. 
* gnu/packages/mail.scm (opensmtpd-next): New public variable.
 2019-03-10 13:37:18 +01:00
Tobias Geerinckx-Rice 380384e419
gnu: ibus: Update Unicode data to 12.0.0. 
* gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for
Unicode data and update hashes.
 2019-03-10 13:37:18 +01:00
Pierre Neidhardt 2b613a1a5d
gnu: hyperledger-fabric: Fix description, set supported system and parallel build. 
* gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase
into something less marketing-ish.
[arguments]: Build with multiple jobs.
[supported-systems]: Support x86_64-linux only.
 2019-03-09 12:30:24 +01:00
Ricardo Wurmus 7d4cab7473
gnu: Add openfst. 
* gnu/packages/machine-learning.scm (openfst): New variable.
 2019-03-09 10:43:37 +01:00
Pierre Neidhardt 983550692d
gnu: Add hyperledger-fabric. 
* gnu/local.mk (hyperledger): New variable.
 2019-03-09 10:15:46 +01:00
Tobias Geerinckx-Rice 373abfb398
gnu: lynis: Update to 2.7.2. 
* gnu/packages/admin.scm (lynis): Update to 2.7.2.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7b957a3344
gnu: youtube-viewer: Update to "3.5.4. 
* gnu/packages/video.scm (youtube-viewer): Update to "3.5.4.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 37fc44eab9
gnu: dovecot: Avoid unnecessary patching. 
* gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’
patching with custom ‘make install sysconfdir=…’.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice f762e49f28
gnu: dovecot: Indent arguments. 
* gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left.
 2019-03-09 02:33:31 +01:00
Tobias Geerinckx-Rice 7969751f54
gnu: i3lock-color: Update to 2.12.c. 
* gnu/packages/wm.scm (i3lock-color): Update to 2.12.c.
[inputs]: Add xcb-util-xrm.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice f45cc966ba
gnu: i3lock-color: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Tobias Geerinckx-Rice a48db08afe
gnu: i3lock-fancy: Don't use unstable tarball. 
* gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-09 02:33:30 +01:00
Ludovic Courtès d429878daf
activation: Shared system home directories are now 555 and root-owned. 
Fixes <https://bugs.gnu.org/34788>.
Reported by Jack Hill <jackhill@jackhill.us>.

Regression introduced by the combination of
8bb76f3d44 and
0ae735bcc8ff7fdc89d67b492bdee9091ee19e86: /var/empty would be 700 and
owned by one of the system accounts (thus inaccessible to others), and
/var/run/dbus would be 700 as well, thereby preventing D-Bus clients
from connecting to the daemon.

* gnu/build/activation.scm (duplicates): New procedure.
(activate-users+groups)[system-accounts]: New variable.
Use it.  Make shared system account home directories #o555 and
root-owned.
* gnu/services/dbus.scm (dbus-activation): Make /var/run/dbus #o755.
* gnu/tests/base.scm (run-basic-test): Test the ownership and
permissions of /var/empty.
 2019-03-08 23:21:59 +01:00
Ricardo Wurmus 74c2339fff
gnu: Add java-eclipse-jdt-compiler-apt. 
* gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable.
 2019-03-08 23:18:56 +01:00
Ricardo Wurmus 8b6acb1f20
gnu: blast+: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-08 23:00:07 +01:00
Ricardo Wurmus f87dcb4d75
gnu: Add texlive-latex-pdfx. 
* gnu/packages/tex.scm (texlive-latex-pdfx): New variable.
 2019-03-08 21:49:25 +01:00
Ricardo Wurmus cafd4d387b
gnu: Add texlive-latex-xmpincl. 
* gnu/packages/tex.scm (texlive-latex-xmpincl): New variable.
 2019-03-08 21:48:19 +01:00
Ricardo Wurmus 847768b9cc
gnu: Add translate2geda. 
* gnu/packages/engineering.scm (translate2geda): New variable.
 2019-03-08 21:45:29 +01:00
Ricardo Wurmus a734da8675
gnu: Add rkrlv2. 
* gnu/packages/music.scm (rkrlv2): New variable.
 2019-03-08 21:02:49 +01:00
Danny Milosavljevic eb6ef893e8
gnu: fc-host-tools: Update to 10. 
* gnu/packages/embedded.scm (fc-host-tools): Update to 10.
[arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX.
 2019-03-08 19:33:04 +01:00
Efraim Flashner 606c198788
gnu: crawl: Find all the included headers. 
* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
change the path for some headers.
 2019-03-08 17:22:29 +02:00
Efraim Flashner b89284407f
gnu: crawl: Don't assume system architecture. 
This allows crawl to build on non-Intel architectures.

* gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to
remove x86* specific CFLAGS.
 2019-03-08 17:22:29 +02:00
Efraim Flashner fc7d6bc60d
gnu: crawl: Build with python3-wrapper. 
* gnu/packages/games.scm (crawl)[native-inputs replace python with
python-wrapper.
[arguments]: Remove custom 'patch-python phase.
 2019-03-08 17:22:26 +02:00
Vagrant Cascadian fb0aeaacea
gnu: u-boot: Remove openssl input. 
Fixes <https://bugs.gnu.org/34717>.

* gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs.
  (u-boot-tools): Disable FIT_SIGNATURES in tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-08 12:31:37 +01:00
Rutger Helling 75f0bda71a
gnu: flatpak: Add more dependencies. 
* gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add
"glib-networking", "gnupg" and "gsettings-desktop-schemas".
 2019-03-08 11:50:56 +01:00
Ricardo Wurmus daeb3cd98c
gnu: r-genelendatabase: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0.
 2019-03-08 09:30:00 +01:00
Ricardo Wurmus 183b6575e7
gnu: r-mzr: Update to 2.16.2. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2.
[inputs]: Replace "boost" with "boost-for-mysql".
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 6453d7aecc
gnu: r-gviz: Update to 1.26.5. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 101dcc29d3
gnu: r-ensembldb: Update to 2.6.7. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d3713237c5
gnu: r-annotationhub: Update to 2.14.4. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 53e7f028ed
gnu: r-rhtslib: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d86b9eca56
gnu: r-genomicfeatures: Update to 1.34.4. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus d493043daf
gnu: r-rtracklayer: Update to 1.42.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2.
 2019-03-08 09:14:01 +01:00
Ricardo Wurmus 57f40dc220
gnu: r-rsamtools: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 58209b1e21
gnu: r-biocparallel: Update to 1.16.6. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus cd43ae3fd6
gnu: r-variantannotation: Update to 1.28.11. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus fff11bccc6
gnu: r-genomeinfodb: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2.
 2019-03-08 09:14:00 +01:00
Ricardo Wurmus 8972989e10
gnu: r-dexseq: Update to 1.28.2. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2.
 2019-03-08 09:14:00 +01:00
Tobias Geerinckx-Rice 792d3ed7eb
gnu: man-pages: Update to 5.00. 
* gnu/packages/man.scm (man-pages): Update to 5.00.
[source]: Re-format.
 2019-03-08 01:35:42 +01:00
Tobias Geerinckx-Rice 13b1fb5c92
gnu: dovecot: Update to 2.3.5. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.
[arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from
‘patch-other-file-names’.
 2019-03-08 01:34:41 +01:00
Tobias Geerinckx-Rice 2fa1a3a808
gnu: dovecot: Don't use NAME in source URI. 
* gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME.
 2019-03-08 01:34:40 +01:00
Ricardo Wurmus 933dad9156
gnu: Add mruby. 
* gnu/packages/ruby.scm (mruby): New variable.
 2019-03-08 00:07:45 +01:00
Ricardo Wurmus 20662a3020
gnu: r-ggmap: Update to 3.0.0. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.0.
[propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr,
r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj,
r-proto, and r-reshape2.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 8f37f53837
gnu: r-readxl: Update to 1.3.0. 
* gnu/packages/cran.scm (r-readxl): Update to 1.3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus f544ab3379
gnu: r-sys: Update to 3.0. 
* gnu/packages/cran.scm (r-sys): Update to 3.0.
 2019-03-07 23:52:44 +01:00
Ricardo Wurmus 790db519f4
gnu: r-servr: Update to 0.13. 
* gnu/packages/cran.scm (r-servr): Update to 0.13.
 2019-03-07 23:52:44 +01:00