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629 Commits

Author SHA1 Message Date
Leo Famulari de67e92288
gnu: Update URLs for sourceforge.net. 
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
 2016-07-21 18:09:40 -04:00
Efraim Flashner a9c64810cd
gnu: gnuplot: Update to 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
 2016-07-21 13:56:51 +03:00
Eric Bavier 2908087013
gnu: superlu-dist: Remove non-free source. 
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
 2016-07-20 21:16:25 -05:00
Eric Bavier 8787c555d9
gnu: slepc: Update to 3.7.1. 
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
 2016-07-20 21:16:25 -05:00
Eric Bavier fafd623e49
gnu: petsc: Update to 3.7.2. 
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
 2016-07-20 21:16:24 -05:00
Eric Bavier b730b43770
gnu: petsc: Make header generation reproducible. 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
  petscmachineinfo.h header.
 2016-07-20 21:16:24 -05:00
Eric Bavier 64dcc28963
gnu: petsc: Use modify-phases. 
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
 2016-07-20 21:16:24 -05:00
Eric Bavier 995a09e055
gnu: superlu: Update to 5.2.1. 
* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
 2016-07-20 18:31:16 -05:00
Eric Bavier d721c83a63
gnu: Add libhilbert. 
* gnu/packages/maths.scm (libhilbert): New variable.
 2016-07-20 18:31:16 -05:00
Ludovic Courtès 8e9ba611cb
gnu: atlas: Use @example in description. 
* gnu/packages/maths.scm (atlas)[description]: Use "@example".
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice d97c429a34
gnu: atlas: Use cpupower in description. 
* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector'
with its replacement 'cpupower --governor'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Ricardo Wurmus 7b569b01d3
gnu: lapack: Build the LAPACKE library. 
* gnu/packages/maths.scm (lapack)[arguments]: Add "-DLAPACKE=ON".
 2016-07-17 11:09:31 +02:00
Efraim Flashner 49f54a7454
gnu: openspecfun: Update to 0.5.2. 
* gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
 2016-07-03 10:14:16 +03:00
Efraim Flashner 26f6e565a9
gnu: openlibm: Update to 0.5.1. 
* gnu/packages/maths.scm (openlibm): Update to 0.5.1.
 2016-07-03 10:07:17 +03:00
Ludovic Courtès 468e0b18d1
gnu: ceres-solver: Propagate GLOG. 
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here.  New field.
 2016-06-29 16:08:46 +02:00
Ludovic Courtès bc3a2e3503
gnu: ceres-solver: Depend on glog. 
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
 2016-06-29 12:01:05 +02:00
Ludovic Courtès ad1c453731
gnu: ipopt: Use libblas from LAPACK, and fix 'Libs' in 'ipopt.pc'. 
* gnu/packages/maths.scm (ipopt)[inputs]: Remove OPENBLAS.
[arguments]: New field.
 2016-06-03 14:37:26 +02:00
Ludovic Courtès f9940ef1e8
gnu: Add ceres-solver. 
* gnu/packages/maths.scm (ceres): New variable.
 2016-06-03 13:54:39 +02:00
Ludovic Courtès 005c787d59
gnu: Add IpOpt. 
* gnu/packages/maths.scm (ipopt): New variable.
 2016-06-02 19:11:14 +02:00
宋文武 de477809d7
gnu: wxmaxima: Wrap with GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS. 
Fixes <http://bugs.gnu.org/22709> and <http://bugs.gnu.org/23260>.

* gnu/packages/math.scm (wxmaxima)[arguments]: Wrap with
GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS.
 2016-05-28 07:29:10 +08:00
Roel Janssen 8f9ac90182
gnu: Rename texlive module to tex. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm.
* gnu/packages/texlive.scm: Rename file to tex.scm.
* gnu/packages/tex.scm: Renamed from texlive.scm.
* gnu/packages/algebra.scm: Adjust accordingly.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/gettext.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/lisp.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
 2016-05-26 10:22:05 +02:00
Ricardo Wurmus 813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 945eef85c5
gnu: armadillo: Update to 6.700.7. 
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
 2016-05-20 15:18:23 +02:00
Ludovic Courtès 9684e30b9b
gnu: flann: Do not install .a files. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
 2016-05-19 14:51:21 +02:00
Ludovic Courtès 39b3033731
gnu: flann: Strip .mex file. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
 2016-05-19 14:51:21 +02:00
Kei Yamashita b7b27a8f28
gnu: octave: Update to 4.0.2. 
* gnu/packages/maths.scm (octave): Update to 4.0.2.
[inputs]: Added cyrus-sasl, openssl.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-19 04:32:23 +03:00
Efraim Flashner 66395a6157
gnu: gmsh: Add missing inputs. 
* gnu/packages/maths.scm (gmsh)[inputs]: Add fontconfig, libxft.
 2016-05-16 10:18:43 +03:00
宋文武 e6a905070a gnu: wxmaxima: Update to 16.04.2. 
* gnu/packages/maths.scm (wxmaxima): Update to 16.04.2.
 2016-05-15 15:49:35 +08:00
Eric Bavier 889187a464 gnu: Add NetCDF. 
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): New variables.
 2016-05-12 19:59:53 +00:00
Eric Bavier 6c90e183cf gnu: Add Matio. 
* gnu/packages/maths.scm (matio): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier 00775104ee gnu: Add h5check. 
* gnu/packages/maths.scm (h5check): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier c8378eea10 gnu: Add hdf5-openmpi. 
* gnu/packages/maths.scm (hdf5-openmpi): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier b8d9c93bde gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH. 
* gnu/packages/patches/hdf5-config-date.patch: New patch.
* gnu/packages/maths.scm (hdf5)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-05-12 19:59:52 +00:00
Eric Bavier f622e2123b gnu: hdf5: Patch output references to zlib. 
* gnu/packages/maths.scm (hdf5)[arguments]: Use modify-phases.  Add
'patch-references' phase.
 2016-05-12 19:59:52 +00:00
Eric Bavier 04b7a7cd10 gnu: hdf5: Update to 1.8.17. 
* gnu/packages/maths.scm (hdf5): Update to 1.8.17.
 2016-05-12 19:59:52 +00:00
Eric Bavier 528bb46436 gnu: Add HYPRE. 
* gnu/packages/maths.scm (hypre, hypre-openmpi): New variables.
* gnu/packages/patches/hypre-doc-tables.patch,
gnu/packages/patches/hypre-ldflags.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Roel Janssen 1b39a196f8
gnu: Add nlopt. 
* gnu/packages/maths.scm (nlopt): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 21:57:05 +02:00
Ricardo Wurmus c5ad883b16 gnu: r-rcpparmadillo: Update to 0.6.700.3.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 458b47e31b gnu: armadillo: Update to 6.700.4. 
* gnu/packages/maths.scm (armadillo): Update to 6.700.4.
 2016-04-20 14:21:30 +02:00
Alex Kost fc1adab148 gnu: packages: Use 'search-patches' everywhere. 
* gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/algebra.scm: Likewise.
* gnu/packages/animation.scm: Likewise.
* gnu/packages/apr.scm: Likewise.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/autotools.scm: Likewise.
* gnu/packages/avahi.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bash.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/ci.scm: Likewise.
* gnu/packages/cmake.scm: Likewise.
* gnu/packages/cpio.scm: Likewise.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/dico.scm: Likewise.
* gnu/packages/doxygen.scm: Likewise.
* gnu/packages/ebook.scm: Likewise.
* gnu/packages/elf.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/ftp.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gawk.scm: Likewise.
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/gd.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/gnuzilla.scm: Likewise.
* gnu/packages/graphics.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/icu4c.scm: Likewise.
* gnu/packages/idutils.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/imagemagick.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/ldc.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libevent.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libunwind.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/llvm.scm: Likewise.
* gnu/packages/lsh.scm: Likewise.
* gnu/packages/lua.scm: Likewise.
* gnu/packages/lxqt.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/mit-krb5.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/multiprecision.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ninja.scm: Likewise.
* gnu/packages/nvi.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/orpheus.scm: Likewise.
* gnu/packages/ots.scm: Likewise.
* gnu/packages/parallel.scm: Likewise.
* gnu/packages/patchutils.scm: Likewise.
* gnu/packages/pcre.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/polkit.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/qemu.scm: Likewise.
* gnu/packages/qt.scm: Likewise.
* gnu/packages/ratpoison.scm: Likewise.
* gnu/packages/rdf.scm: Likewise.
* gnu/packages/readline.scm: Likewise.
* gnu/packages/rush.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/sdl.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/tcsh.scm: Likewise.
* gnu/packages/texinfo.scm: Likewise.
* gnu/packages/tls.scm: Likewise.
* gnu/packages/tor.scm: Likewise.
* gnu/packages/tv.scm: Likewise.
* gnu/packages/valgrind.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/vtk.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/xiph.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
* gnu/packages/zip.scm: Likewise.
 2016-04-14 10:38:21 +03:00
Roel Janssen ec8c7e4734 gnu: Add r-pracma. 
* gnu/packages/maths.scm (r-pracma): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-12 14:55:10 -04:00
John Darrington 9c45c51992 gnu: Add c-graph. 
* gnu/packages/maths.scm (c-graph): New variable.
 2016-04-09 09:16:48 +02:00
Andreas Enge 53696f10c1 gnu: Add cddlib. 
* gnu/packages/maths.scm (cddlib): New variable.
 2016-04-05 19:22:36 +02:00
Andreas Enge b146763a86 gnu: Add 4ti2. 
* gnu/packages/maths.scm (4ti2): New variable.
 2016-04-05 18:48:02 +02:00
John Darrington 0b65f1a013 gnu: Move pspp from maths.scm to statistics.scm 
* gnu/packages/maths.scm (pspp): Deleted.
* gnu/packages/statistics.scm (pspp): New variable.
 2016-04-04 07:15:14 +02:00
Efraim Flashner fd7575d479 gnu: pspp: Update to 0.10.1. 
* gnu/packages/maths.scm (pspp): Update to 0.10.1.
 2016-04-03 08:47:35 +03:00
Efraim Flashner f04433773d gnu: glpk: Update to 4.60. 
* gnu/packages/maths.scm (glpk): Update to 4.60.
 2016-04-01 16:52:54 +03:00
Efraim Flashner e12f047f75 gnu: pspp: Update to 0.10.0. 
* gnu/packages/maths.scm (pspp): Update to 0.10.0.
[inputs]: Switch gtk+-2 to gtk+, gtksourceview-2 to gtksourceview.
 2016-03-26 22:39:29 +03:00
Eric Bavier dfdf571688 gnu: petsc: Fix compiler configuration references. 
* gnu/packages/maths.scm (petsc)[arguments]: When patching compiler
  driver paths, do not assume they come from fortran input.
 2016-03-16 18:32:25 -05:00
Eric Bavier d588422e13 gnu: slepc: Set origin file-name. 
* gnu/packages/maths.scm (slepc)[source]: Add file-name.
 2016-03-16 18:32:25 -05:00
Efraim Flashner eb4f2cd7e3 gnu: glpk: Update to 4.59. 
* gnu/packages/maths.scm (glpk): Update to 4.59.
 2016-03-12 23:07:09 +02:00
Andreas Enge 289adba7a3 gnu: gnuplot: Use texlive-minimal instead of texlive-bin. 
* gnu/packages/maths.scm (gnuplot)[inputs]: Replace texlive-bin by
  texlive-minimal.
 2016-03-09 22:36:45 +01:00
Efraim Flashner 723a6910ca gnu: glpk: Update to 4.58. 
* gnu/packages/maths.scm (glpk): Update to 4.58.
 2016-02-18 15:35:28 +02:00
Andreas Enge ec4130b7e7 gnu: gnuplot: Update to 5.0.2. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
 2016-02-13 13:37:49 +01:00
Eric Bavier c7b08410de gnu: gmsh: Update to 2.11.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
  [arguments]: Replace 'check phase.
 2016-01-06 10:49:23 -06:00
Fabian Harfert 45147b0caa gnu: Add xaos. 
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-12-31 11:29:43 +03:00
Ricardo Wurmus e22d4ca4c4 gnu: Add r-rcpparmadillo. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
 2015-12-21 16:05:37 +01:00
Ricardo Wurmus b15e47f9e6 gnu: Add armadillo. 
* gnu/packages/maths.scm (armadillo): New variable.
 2015-12-21 15:47:40 +01:00
Eric Bavier 97003b5ccc gnu: gnuplot: Update to 5.0.1. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
  (native-inputs): 'texlive' -> 'texlive-bin'.
 2015-11-24 11:41:46 -06:00
Eric Bavier 9cf5245497 gnu: slepc: Update to 3.6.2. 
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
  [arguments]: Append "/lib" to arpack configure flag.  Use 'inputs'
  rather than '%build-inputs' in 'configure phase.
 2015-11-20 11:58:40 -06:00
Eric Bavier 32187d99bb gnu: petsc: Update to 3.6.2. 
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
 2015-11-20 11:58:40 -06:00
Eric Bavier c69fa4380a gnu: mumps: Update to 5.0.1. 
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
 2015-11-20 11:58:40 -06:00
宋文武 a124bbd2f4 gnu: Adjust formatting as recommended by 'guix lint'. 
* gnu/packages/aidc.scm (barcode, qrencode),
  gnu/packages/bash.scm (bash, bash-completion),
  gnu/packages/busybox.scm (busybox),
  gnu/packages/cdrom.scm (cdparanoia),
  gnu/packages/cmake.scm (cmake),
  gnu/packages/conkeror.scm (conkeror),
  gnu/packages/cook.scm (cook),
  gnu/packages/curl.scm (curl),
  gnu/packages/docbook.scm (docbook-xsl),
  gnu/packages/enlightenment.scm (enlightenment),
  gnu/packages/games.scm (abbaye),
  gnu/packages/geeqie.scm (exiv2),
  gnu/packages/gimp.scm (gegl),
  gnu/packages/gl.scm (glu, freeglut, ftgl),
  gnu/packages/glib.scm (glib),
  gnu/packages/gnome.scm (orbit2, gconf, geocode-glib),
  gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base),
  gnu/packages/linux.scm (util-linux),
  gnu/packages/lisp.scm (gcl, ecl),
  gnu/packages/maths.scm (gnuplot, hdf5),
  gnu/packages/ssh.scm (dropbear),
  gnu/packages/web.scm (json-c): Remove tabulations and trailing
  white spaces or reformat to fit within 80 columns.
* gnu/packages/audio.scm (aubio),
  gnu/packages/emacs.scm (emacs-s),
  gnu/packages/engineering.scm (geda-gaf),
  gnu/packages/games.scm (dosbox),
  gnu/packages/gnome.scm (gusb),
  gnu/packages/gtk.scm (gtk+),
  gnu/packages/guile.scm (guile-wisp),
  gnu/packages/hurd.scm (hurd-headers),
  gnu/packages/wm.scm (i3-wm): Adjust synopsis or description.
 2015-11-13 23:45:55 +08:00
Efraim Flashner 0534dd93ce gnu: gsl: Update to 2.1. 
* gnu/packages/maths.scm (gsl): Update to 2.1.
 2015-11-12 16:53:43 +02:00
Efraim Flashner 295fc0829b gnu: pspp: Use gtksourceview-2. 
* gnu/packages/maths.scm (pspp)[inputs]: Use gtksourceview-2.
 2015-11-10 13:58:25 +02:00
Efraim Flashner d8c97beb06 gnu: Add wcalc. 
* gnu/packages/maths.scm (wcalc): New variable.
 2015-11-08 23:01:50 +02:00
Efraim Flashner 19659accef gnu: octave: Upgrade to 4.0.0. 
* gnu/packages/maths.scm (octave): Update to 4.0.0.
 2015-11-08 18:44:06 +02:00
Efraim Flashner 552cb93c0a gnu: glpk: Update to 4.57. 
* gnu/packages/maths.scm (glpk): Update to 4.57.
 2015-11-08 16:27:39 +02:00
Efraim Flashner 5adbe65fec gnu: gsl: Enable tests. 
* gnu/packages/maths.scm (gsl)[arguments]: Enable tests for i686-linux.
 2015-11-02 21:04:18 +02:00
Efraim Flashner f133955122 gnu: gsl: Update to 2.0. 
* gnu/packages/maths.scm (gsl): Update to 2.0.
  [source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
 2015-11-02 21:04:18 +02:00
Ricardo Wurmus bd0b4379b2 gnu: openblas: Make substitutable on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Make package
  substitutable when the system is MIPS.
 2015-10-30 17:47:54 +01:00
Ricardo Wurmus 8a637e79ed gnu: openblas: Set TARGET to SICORTEX on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Add "TARGET=SICORTEX" to
  make-flags when building for MIPS.
 2015-10-30 17:47:54 +01:00
Ricardo Wurmus 69851c59c7 gnu: openblas: Update to 0.2.15. 
* gnu/packages/maths.scm (openblas): Update to 0.2.15.
 2015-10-29 15:44:31 +01:00
Efraim Flashner cbe9505778 gnu: units: Update to 2.12. 
* gnu/packages/maths.scm (units): Update to 2.12.
 2015-10-20 09:41:54 +03:00
Andreas Enge 127cbd85c0 gnu: glpk: Update to 4.56. 
* gnu/packages/maths.scm (glpk): Update to 4.56.
 2015-10-02 20:07:17 +02:00
Andreas Enge 71923a91b1 gnu: openblas: Fix configure flags on armhf and take target system into account for cross building. 
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
  and enable runtime cpu detection only on x86 systems. Take the target
  system into account when cross compiling.
 2015-10-01 19:35:16 +02:00
Ludovic Courtès 75710da667 Merge branch 'master' into core-updates 2015-09-13 21:28:01 +02:00
Andreas Enge 194c7f95f1 gnu: Add FLANN. 
* gnu/packages/maths.scm (flann): New variable.
 2015-09-06 19:34:09 +02:00
Ludovic Courtès 96c4621056 gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases. 
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
  plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
  Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
 2015-08-29 01:25:08 +02:00
Ludovic Courtès c01876b1af gnu: pspp: Update to 0.8.5. 
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
  [native-inputs]: Add TEXINFO.
 2015-07-21 01:12:34 +02:00
Alex Kost e881752c39 gnu packages: Clean up synopses and descriptions. 
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
  gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
  gnu/packages/code.scm, gnu/packages/compression.scm,
  gnu/packages/databases.scm, gnu/packages/enchant.scm,
  gnu/packages/firmware.scm, gnu/packages/fonts.scm,
  gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
  gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
  gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
  gnu/packages/haskell.scm, gnu/packages/language.scm,
  gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
  gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
  gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
  gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
  gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
  gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
  gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
  gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
  gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
  gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
  gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
  gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
  Fix typos.  Trim long lines.  Add missing periods in the end of sentences.
  Use double spaces between sentences.  Remove trailing whitespaces.
 2015-07-18 13:05:01 +03:00
Alex Kost 7c125ce023 gnu packages: Avoid description lines with leading "(". 
* gnu/packages/curl.scm (curl): Reformat description to avoid a line
  beginning with "(" because such lines break font-lock highlighting
  in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
 2015-07-18 13:05:01 +03:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier 8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier 6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Ricardo Wurmus 19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Mark H Weaver 180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Ludovic Courtès 0004c5904c packages: Make 'location' field innate. 
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
  'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
  Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
 2015-06-11 23:33:32 +02:00
Mark H Weaver 9aafbc0c13 gnu: Add wxmaxima. 
* gnu/packages/maths.scm (wxmaxima): New variable.
 2015-05-26 10:24:11 -04:00
Mark H Weaver 77af7b2407 gnu: maxima: Update to 5.36.1. 
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1.  Add patch.
 2015-05-26 10:23:38 -04:00
Andreas Enge 7f18257bea gnu: Add lpsolve. 
* gnu/packages/maths.scm (lpsolve): New variable.
 2015-05-20 23:21:50 +02:00
Ricardo Wurmus 5b5ea159ac gnu: openblas: Disable DYNAMIC_ARCH on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when
  building for MIPS.  Also make non-substitutable for MIPS.
 2015-05-20 13:30:24 +02:00
Ricardo Wurmus ecf28847b2 gnu: openblas: Update to 0.2.14. 
* gnu/packages/maths.scm (openblas): Update to 0.2.14.
 2015-05-15 13:53:30 +02:00
Eric Bavier 1ec78e9d71 gnu: octave: Add fftw, arpack, and glu inputs. 
* gnu/packages/maths.scm (octave)[inputs]: Add fftw, fftwf, arpack,
  and glu.
  [description]: Wrap to 80 columns.
 2015-05-11 10:10:00 -05:00
Ricardo Wurmus af5b817ea9 gnu: openblas: build for all supported CPUs. 
* gnu/packages/maths.scm (openblas)[arguments]: Add "DYNAMIC_ARCH=1" to
  make flags.  Remove "#:substitutable? #f".
 2015-03-26 07:54:55 +01:00
Mark H Weaver 87db65507e Remove unused patchelf inputs. 
* gnu/packages/maths.scm (lapack, gmsh), gnu/packages/ssh.scm (libssh): Remove
  unused patchelf from native-inputs.
 2015-03-23 13:30:06 -04:00
Ricardo Wurmus 61a529b421 gnu: Add double-conversion. 
* gnu/packages/maths.scm (double-conversion): New variable.
 2015-03-23 10:38:06 +01:00
Ricardo Wurmus 2742f87e17 gnu: Add SuiteSparse. 
* gnu/packages/maths.scm (suitesparse): New variable.
 2015-03-23 10:19:45 +01:00
Ricardo Wurmus e73b49fbd6 gnu: Add openblas. 
* gnu/packages/maths.scm (openblas): New variable.
 2015-03-23 10:08:28 +01:00
Ludovic Courtès 166191b377 gnu: Update packages to use 'non-copyleft' instead of 'bsd-style'. 
* gnu/packages/avr.scm, gnu/packages/compression.scm,
  gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm,
  gnu/packages/databases.scm, gnu/packages/firmware.scm,
  gnu/packages/flex.scm, gnu/packages/fontutils.scm,
  gnu/packages/gd.scm, gnu/packages/ghostscript.scm,
  gnu/packages/gnunet.scm, gnu/packages/graphics.scm,
  gnu/packages/hugs.scm, gnu/packages/image.scm,
  gnu/packages/linux.scm, gnu/packages/mail.scm,
  gnu/packages/maths.scm, gnu/packages/mit-krb5.scm,
  gnu/packages/python.scm, gnu/packages/rdf.scm,
  gnu/packages/ssh.scm, gnu/packages/tcl.scm,
  gnu/packages/xdisorg.scm, gnu/packages/xiph.scm,
  gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft'
  instead of 'bsd-style'.
 2015-03-14 19:27:14 +01:00
Andreas Enge c12efc72cf gnu: Add glm. 
* gnu/packages/maths.scm (glm): New variable.

Co-authored-by: John Darrington <john@darrington.wattle.id.au>
 2015-03-14 17:39:58 +01:00
Andreas Enge 12ed1216de gnu: hdf5: Add input zlib. 
* gnu/packages/maths.scm (hdf5): Add input zlib.
 2015-03-13 00:15:47 +01:00
Andreas Enge 40029cbe30 gnu: hdf5: Combine all outputs into one. 
* gnu/packages/maths.scm (hdf5): Combine the outputs "out", "bin", "lib" and
  "include" into "out".
  (gmsh, octave): Adapt list of inputs.
 2015-03-12 23:59:49 +01:00
Ricardo Wurmus e62be58fc3 gnu: Add openspecfun. 
* gnu/packages/maths.scm (openspecfun): New variable.
 2015-03-10 23:39:12 +01:00
Ricardo Wurmus e1605e36a8 gnu: Add openlibm. 
* gnu/packages/maths.scm (openlibm): New variable.
 2015-03-10 23:38:55 +01:00
Ricardo Wurmus 279663efa5 gnu: Add muparser. 
* gnu/packages/maths.scm (muparser): New variable.
 2015-03-05 08:01:15 +01:00
Ludovic Courtès 1289062522 Merge branch 'core-updates'. 2015-03-04 14:07:23 +01:00
宋文武 32158110b0 gnu: octave: Update to 3.8.2. 
* gnu/packages/maths.scm (octave): Update to 3.8.2.
 2015-03-04 16:45:23 +08:00
Mark H Weaver f586c87705 gnu: Add 'file-name' fields for github source tarballs without a name. 
* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
  gnu/packages/audio.scm (jack-2, lvtk),
  gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
  gnu/packages/game-development.scm (tiled),
  gnu/packages/games.scm (minetest-data, minetest, retroarch),
  gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
  gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
  gnu/packages/mail.scm (offlineimap, libetpan),
  gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
  gnu/packages/nutrition.scm (gourmet),
  gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
  gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
  'file-name' field to origin.
 2015-02-28 09:49:01 -05:00
Ricardo Wurmus 865a69ddc8 gnu: Add arpack-ng. 
* gnu/packages/maths.scm (arpack-ng): New variable.
 2015-02-20 14:26:48 +01:00
Mark H Weaver 85f4190221 gnu: gmsh: Add glu to inputs. 
* gnu/packages/maths.scm (gmsh): Add glu to inputs.
 2014-12-27 11:18:29 -05:00
Federico Beffa 01480b9e1c gnu: atlas: Remove MIPS from 'supported-systems'. 
* gnu/packages/maths.scm (atlas): Drop support for "mips64el-linux".
 2014-12-08 09:54:34 +01:00
Federico Beffa af89a66735 gnu: atlas: Try to fix build on MIPS. 
* gnu/packages/maths.scm (atlas): Add MIPS specific configure flags.
 2014-11-23 15:37:29 +01:00
Ludovic Courtès f15615b119 gnu: atlas: Make it non-substitutable. 
Suggested by Federico Beffa <beffa@ieee.org>.

* gnu/packages/maths.scm (atlas)[arguments]: Pass #:substitutable? #f.
  [description]: Adjust accordingly.
 2014-10-28 10:17:55 +01:00
Eric Bavier 35b9e4232c gnu: Some cleanup based on lint checkers. 
* gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm,
  gnu/packages/apr.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm,
  gnu/packages/base.scm, gnu/packages/calcurse.scm, gnu/packages/cdrom.scm,
  gnu/packages/check.scm, gnu/packages/compression.scm, gnu/packages/cook.scm,
  gnu/packages/crypto.scm, gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
  gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm,
  gnu/packages/doxygen.scm, gnu/packages/dwm.scm, gnu/packages/elf.scm,
  gnu/packages/emacs.scm, gnu/packages/feh.scm, gnu/packages/file.scm,
  gnu/packages/fish.scm, gnu/packages/flex.scm, gnu/packages/fltk.scm,
  gnu/packages/fontutils.scm, gnu/packages/games.scm, gnu/packages/gcal.scm,
  gnu/packages/gcc.scm, gnu/packages/geeqie.scm, gnu/packages/ghostscript.scm,
  gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
  gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
  gnu/packages/gperf.scm, gnu/packages/grub.scm, gnu/packages/gsasl.scm,
  gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm,
  gnu/packages/hurd.scm, gnu/packages/icu4c.scm, gnu/packages/image.scm,
  gnu/packages/imagemagick.scm, gnu/packages/irssi.scm, gnu/packages/kde.scm,
  gnu/packages/libdaemon.scm, gnu/packages/libevent.scm,
  gnu/packages/libidn.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm,
  gnu/packages/lout.scm, gnu/packages/lsh.scm, gnu/packages/lsof.scm,
  gnu/packages/lua.scm, gnu/packages/maths.scm, gnu/packages/mcrypt.scm,
  gnu/packages/mp3.scm, gnu/packages/netpbm.scm, gnu/packages/noweb.scm,
  gnu/packages/ocaml.scm, gnu/packages/openssl.scm, gnu/packages/pcre.scm,
  gnu/packages/pdf.scm, gnu/packages/pkg-config.scm,
  gnu/packages/pretty-print.scm, gnu/packages/python.scm, gnu/packages/qt.scm,
  gnu/packages/rsync.scm, gnu/packages/scheme.scm, gnu/packages/scrot.scm,
  gnu/packages/sdl.scm, gnu/packages/skribilo.scm, gnu/packages/ssh.scm,
  gnu/packages/stalonetray.scm, gnu/packages/tcl.scm, gnu/packages/tcsh.scm,
  gnu/packages/telephony.scm, gnu/packages/texlive.scm, gnu/packages/tor.scm,
  gnu/packages/valgrind.scm, gnu/packages/version-control.scm,
  gnu/packages/vim.scm, gnu/packages/vpn.scm, gnu/packages/w3m.scm,
  gnu/packages/web.scm, gnu/packages/wordnet.scm, gnu/packages/xiph.scm,
  gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/packages/zile.scm,
  gnu/packages/zip.scm, gnu/packages/zsh.scm [synopsis, description]: Adjust
  according to lint checkers.
* gnu/packages/fltk.scm (fltk)[source]: Wrap long line in uri.
* /gnu/packages/xiph.scm (libogg, libtheora, vorbis-tools)[source]: Same.
 2014-10-26 13:03:53 -05:00
Federico Beffa ec322be248 gnu: Add ATLAS. 
* gnu/packages/maths.scm (atlas): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-10-26 15:16:06 +01:00
John Darrington 3dcd78109c gnu: pspp: Upgrade to 0.8.4. 
* gnu/packages/maths.scm (pspp): Upgrade to 0.8.4.
 2014-10-03 19:52:50 +02:00
Mathieu Lirzin 182d6311c2 gnu: Add dionysus. 
* gnu/packages/maths.scm (dionysus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-29 00:16:28 +02:00
Federico Beffa f36afe4d05 gnu: maxima: Install .el files in the right place, and help find Gnuplot. 
* gnu/packages/maths.scm (maxima): Remove Tcl from 'inputs'.  Add
  'post-install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-27 11:22:58 +02:00
Federico Beffa df354a771d gnu: maxima: Update to 5.34.1 and add dependencies. 
* gnu/packages/maths.scm (maxima): Update to 5.34.1 which fixes a bug in
  the plotting capabilities present in the previous version.  Add Gnuplot
  and Tcl/Tk to 'inputs'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-09-24 09:35:44 +02:00
Mark H Weaver b5b73a8269 Use #:prefix instead of #:renamer with 'symbol-prefix-proc'. 
* gnu/packages/abiword.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm,
  gnu/packages/backup.scm, gnu/packages/bittorrent.scm,
  gnu/packages/boost.scm, gnu/packages/compression.scm,
  gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
  gnu/packages/cyrus-sasl.scm, gnu/packages/dc.scm, gnu/packages/emacs.scm,
  gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/geeqie.scm,
  gnu/packages/ghostscript.scm, gnu/packages/gimp.scm,
  gnu/packages/gkrellm.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
  gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
  gnu/packages/gnutls.scm, gnu/packages/gnuzilla.scm, gnu/packages/gsasl.scm,
  gnu/packages/gtk.scm, gnu/packages/gv.scm, gnu/packages/image.scm,
  gnu/packages/indent.scm, gnu/packages/inkscape.scm,
  gnu/packages/lesstif.scm, gnu/packages/links.scm, gnu/packages/lisp.scm,
  gnu/packages/lsh.scm, gnu/packages/lsof.scm, gnu/packages/maths.scm,
  gnu/packages/mp3.scm, gnu/packages/openssl.scm, gnu/packages/ots.scm,
  gnu/packages/pciutils.scm, gnu/packages/pcre.scm, gnu/packages/pdf.scm,
  gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/slim.scm,
  gnu/packages/ssh.scm, gnu/packages/texlive.scm, gnu/packages/vim.scm,
  gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wv.scm,
  gnu/packages/xiph.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm,
  gnu/packages/yasm.scm, gnu/packages/zip.scm,
  guix/build/cmake-build-system.scm, guix/build/perl-build-system.scm,
  guix/build/python-build-system.scm, guix/download.scm: Replaces uses of
  #:renamer and 'symbol-prefix-proc' with #:prefix.
 2014-09-23 18:52:29 -04:00
Alex Kost 516e93f8a6 gnu: Fix typos. 
* gnu/packages/cdrom.scm (cdparanoia): Double space in description.
* gnu/packages/maths.scm (hdf5): Double space in synopsis.
 2014-09-19 15:31:19 +04:00
Ludovic Courtès 9e771e3bb6 gnu: Adjust synopses as recommended by 'guix lint'. 
Remove leading articles and trailing periods in package synopses.
 2014-09-13 15:50:30 +02:00
Ludovic Courtès c5779c931b gnu: Synchronize GNU package descriptions with upstream. 
These are mostly two-space-after-end-of-sentence-period changes
resulting from commit 3a09e1d2.
 2014-09-13 15:36:07 +02:00
Andreas Enge 66fdf54587 gnu: glpk: Update to 4.55. 
* gnu/packages/maths.scm (glpk): Update to 4.55.
 2014-09-11 16:43:08 +02:00
Ludovic Courtès c3cf9d36e4 Merge branch 'bug-17853' 2014-07-13 23:44:55 +02:00
John Darrington 8731e52749 gnu: Add maxima. 
* gnu/packages/maths.scm (maxima): New variable.
 2014-07-05 16:16:03 +02:00
Eric Bavier 221ed17a58 gnu: Adjust yet more packages to GLib "bin" split. 
* gnu/packages/maths.scm (pspp): Add glib:bin to 'native-inputs'.
* gnu/packages/gnome.scm (gconf, gnome-vfs, libgnome, libgnomeui,
  libbonoboui): Likewise.
  (libbonobo, libgnomecanvas, libgnomeprint): Comment on why glib:bin.
* gnu/packages/gtk.scm (gtksourceview): Likewise.
 2014-07-02 13:32:59 -05:00
Andreas Enge 93c3de921a gnu: hdf5: Fix source download location. 
* gnu/packages/maths.scm (hdf5): Use "release" directory and not the "current"
    directory for the source, which does not break on new upstream releases.
 2014-05-28 16:04:08 +02:00
John Darrington 5698b8b82c gnu: Add gsegrafix and dependent libraries. 
* gnu/packages/math.scm (gsegrafix): New variable.
* gnu/packages/gtk.scm (pangox-compat): New variable.
* gnu/packages/gnome.scm (libidl, orbit2, libbonobo, gconf, gnome-mime-data,
  gnome-vfs, libgnome, libart-lgpl, libgnomecanvas, libgnomeui, libglade,
  libgnomeprint, libgnomeprintui, libbonoboui): New variables.
 2014-05-26 18:19:55 +02:00
Eric Bavier 16ecf3ff4a gnu: Edit synopses of petsc packages. 
* gnu/packages/maths.scm (petsc) [synopsis]: Shorten.
  (petsc-complex,petsc-openmpi,petsc-complex-openmpi) [synopsis]:
  Repeat synopsis from petsc package with extensions.  [description]: Remove.
 2014-05-20 09:53:19 -05:00
Eric Bavier a54aefead6 gnu: Add superlu-dist package. 
* gnu/packages/maths.scm (superlu-dist): New variable.
* gnu/packages/patches/superlu-dist-scotchmetis.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
Eric Bavier 6acb4adb34 gnu: Add pt-scotch package. 
* gnu/packages/maths.scm (pt-scotch): New variable.
 2014-05-19 00:15:11 -05:00
Eric Bavier f8ed036a31 gnu: Add scotch package. 
* gnu/packages/maths.scm (scotch): New variable.
* gnu/packages/patches/scotch-test-threading.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
John Darrington 7e0c23fb3e gnu: pspp: Upgrade to 0.8.3 
* gnu/packages/maths.scm (pspp): Update to 0.8.3.
 2014-05-11 13:42:49 +02:00
Eric Bavier d8c7eeb996 gnu: Add petsc-openmpi. 
* gnu/packages/maths.scm (petsc-openmpi): New variable.
  (petsc-complex-openmpi): New variable.
 2014-05-08 12:42:17 -05:00
Eric Bavier 10b11968c8 gnu: petsc: Clean some more leaked chroot references 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub some
  config-generated header files before build.  Only remove files if
  they exist.
 2014-05-08 12:42:17 -05:00
Ludovic Courtès 0e2672aee3 gnu: Add missing import in (gnu packages maths). 
* gnu/packages/maths.scm: Use (guix utils), which was needed since
  b9100e2f.
 2014-05-04 11:15:30 +02:00
Eric Bavier f5d5a346db gnu: Add missing copyright line 
* gnu/packages/maths.scm: Add copyright line missing from 3de01d3.
 2014-05-02 14:25:17 -05:00
Eric Bavier f258212df5 gnu: petsc: Add input superlu. 
* gnu/packages/maths.scm (petsc): Configure with superlu support.
 2014-05-02 14:25:17 -05:00
Eric Bavier 183e44ae44 gnu: Add superlu 
* gnu/packages/maths.scm (superlu): New variable
 2014-05-02 14:25:17 -05:00
Eric Bavier b9100e2f11 gnu: Add petsc 
* gnu/packages/maths.scm (petsc): New variable.
  (petsc-complex): New variable.
* gnu/packages/patches/petsc-fix-threadcomm.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-01 15:27:30 -05:00
Eric Bavier edf684ef99 gnu: gmsh: Fix typos 
* gnu/packages/maths.scm (gmsh): Fix typo and space aftern
  end-of-sentence.
 2014-04-30 14:56:52 -05:00
Eric Bavier 3de01d3fa1 gnu: Add gmsh 
* gnu/packages/maths.scm (gmsh): New variable
 2014-04-30 11:39:31 -05:00
Andreas Enge 06ed59825e guix: cmake: Add input and package libraries to the rpath, and adapt package 
definitions accordingly.

* guix/build/cmake-build-system.scm (configure): Add flags.
* gnu/packages/maths.scm (lapack): Drop special code.
* gnu/packages/ssh.scm (libssh): Drop special code.
* gnu/packages/slim.scm (slim): Drop special code and enable shared library.

Co-authored-by: Eric Bavier <bavier@member.fsf.org>
 2014-04-27 11:35:26 +02:00
Eric Bavier 57e544e8f7 gnu: lapack: Augment library rpath 
* gnu/packages/maths.scm (lapack) [arguments]: New post-installation
  phase to augment the rpath of installed libraries.
 2014-04-08 23:10:42 -05:00
Eric Bavier 8de3a57821 gnu: lapack: Build shared libraries 
* gnu/packages/maths.scm (lapack) [arguments]: Add -DBUILD_SHARED_LIBS to
  #:configure-flags
 2014-04-07 14:44:57 -05:00
Ludovic Courtès 574e86f9cf gnu: Synchronize synopses and descriptions with the Womb. 
* gnu/packages/gnunet.scm (gnunet): Synchronize description and synopsis
  with upstream.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/grub.scm (grub): Likewise.
* gnu/packages/pretty-print.scm (enscript): Likewise.
 2014-04-06 21:18:13 +02:00
Andreas Enge 983815c8b9 gnu: units: Upgrade to 2.11. 
* gnu/packages/maths.scm (units): Upgrade to 2.11.
 2014-04-03 20:54:16 +02:00
Andreas Enge 1f1c0aff26 gnu: glpk: Upgrade to 4.54. 
* gnu/packages/maths.scm (glpk): Upgrade to 4.54.
 2014-04-03 20:18:25 +02:00
Eric Bavier d4bf49b140 gnu: Remove unused lambda arguments and prefer separate phases over 
augmented phases.

* gnu/packages/compression.scm (sharutils) [arguments]: Remove unused
  lambda args.
* gnu/packages/gl.scm (mesa) [arguments]: Same
* gnu/packages/fltk.scm [arguments]: Same.  Substitute const check
  phase with #:tests? #f.  Add pre-configure phase.
* gnu/packages/ghostscript.scm (ghostscript) [arguments]: Put makefile
  patches in separate phase.  Put so steps oinseparate phases.
* gnu/packages/glib.scm (gobject-introspection) [arguments]: Remove
  unused lambda args.  Put patches in pre-configure phase.
* gnu/packages/gnupg.scm (gnupg) [arguments]: Put patch in
  pre-configure phase.
  (pius) [arguments]: Delete const #t configure and build phases.
  (signing-party) [arguments]: Factor patches into post-unpack phase.
  (paperkey) [arguments]: Remove unused lambda args.  Factor out
  patches into pre-check phase.
* gnu/packages/icu4c.scm [arguments]: Change source dir after standard
  unpack phase.  Factor configure patches into pre-configure phase.
* gnu/packages/lsof.scm [arguments]: Remove unused lambda args.
  Remove unnecessary apply.
* gnu/packages/lvm.scm (lvm2) [arguments]: Factor out patches into
  pre-configure phase.
* gnu/packages/libtiff.scm [arguments]: Same
* gnu/packages/maths.scm (hdf5) [arguments]: Same
* gnu/packages/gtk.scm (gtk+-2) [arguments]: Same
* gnu/packages/mp3.scm (libmad) [arguments]: Same
  (id3lib) [arguments]: Same
* gnu/packages/python.scm (python-2) [arguments]: Same
* gnu/packages/texlive.scm (texlive) [arguments]: Same
* gnu/packages/pretty-print.scm (a2ps) [arguments]: Same
  (trueprint) [arguments]: Same
  (source-highlight) [arguments]: Same.  Remove unused lambda args.
* gnu/packages/netpbm.scm [arguments]: Remove unused lambda args.
  Factor out test patches into pre-check phase.  Condense calls to
  substitute*
* gnu/packages/openldap.scm [arguments]: Factor out libtool copy into
  post-configure phases. [synopsis] Remove package name.
* gnu/packages/ssh.scm (openssh) [arguments]: Factor out patches into
  separate phases.
* gnu/packages/tcsh.scm [arguments]: Factor out test patches into
  pre-check phase.
* gnu/packages/version-control.scm (git) [arguments]: Factor out
  patches into post-configure phase.
* gnu/packages/vim.scm [arguments]: Same. [synopsis] Remove package
  name.
* gnu/packages/vpn.scm (openconnect) [arguments]: Put configure flags
  in #:configure-flags
 2014-03-31 10:34:17 -05:00
John Darrington 7ee3f1a208 gnu: Add hdf5. 
* gnu/packages/maths.scm (hdf5): New variable.
* gnu/packages/maths.scm (octave): New input hdf5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-02-16 23:35:37 +01:00
John Darrington 668c06acfc gnu: Add GNU Octave. 
* gnu/packages/maths.scm (octave): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-30 22:00:55 +01:00
John Darrington 73fed4f868 gnu: Add gnuplot 
* gnu/packages/maths.scm (gnuplot): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-26 21:16:55 +01:00
Andreas Enge 566146abba gnu: lapack: Update to 3.5.0. 
* gnu/packages/maths.scm (lapack): Update to 3.5.0.
 2014-01-26 13:04:03 +01:00
John Darrington e7d6f7bfa0 gnu: pspp: Upgrade to 0.8.2 
* gnu/packages/maths.scm (pspp): Update to 0.8.2.
* gnu/packages/patches/pspp-tests.patch: Deleted.
* gnu-system.am: Removed pspp-tests.patch from the manifest.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-15 21:27:41 +01:00
John Darrington e6a5ce8e67 gnu: pspp: Enabled build of the gui 
* gnu/packages/math.scm (pspp): Removed the --without-gui flag
and added the necessary inputs to build it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2013-12-02 13:51:02 +01:00
Ludovic Courtès 79c311b81c gnu: Synchronize descriptions with 'gnumaint'. 2013-12-01 22:33:23 +01:00
Ludovic Courtès 1dba64079c gnu: gettext: Rename binding to 'gnu-gettext'. 
* gnu/packages/gettext.scm (gettext): Rename to...
  (gnu-gettext): ... this.  This is used to work around the circular
  dependency introduced in commit c42a4b7, which users with a #:renamer
  cannot cope with.
* gnu/packages/acl.scm, gnu/packages/attr.scm, gnu/packages/cdrom.scm,
  gnu/packages/fdisk.scm, gnu/packages/gkrellm.scm, gnu/packages/glib.scm,
  gnu/packages/gnunet.scm, gnu/packages/grub.scm, gnu/packages/linux.scm,
  gnu/packages/maths.scm, gnu/packages/nano.scm, gnu/packages/parted.scm,
  gnu/packages/system.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/w3m.scm, gnu/packages/wget.scm:
  Adjust accordingly.
 2013-11-20 22:12:49 +01:00
Andreas Enge f392980041 gnu: pspp: Add input cairo. 
* gnu/packages/maths.scm (pspp): Add cairo and further necessary inputs.
* gnu/packages/patches/pspp-tests.patch: New file, thanks to
  John Darrington <john@darrington.wattle.id.au>.
* gnu-system.am (dist_patch_DATA): Register patch.
 2013-11-18 21:12:27 +01:00
Ludovic Courtès 6a9957545c gnu: lapack: Use origin snippet to remove the non-free files. 
* gnu/packages/maths.scm (lapack): Add 'snippet' field with contents of
  former 'remove-non-free-files' phase; remove that phase.
 2013-11-07 23:07:45 +01:00
Nikita Karetnikov da95c8170a gnu: Add LAPACK. 
* gnu/packages/maths.scm (lapack): New variable.
 2013-11-07 08:20:11 +00:00
Andreas Enge b92eee75b1 gnu: Add GLPK. 
* gnu/packages/maths.scm (glpk): New variable.
 2013-10-22 20:24:33 +02:00
Andreas Enge 487da56570 gnu: gsl: Update to 1.16. 
* gnu/packages/maths.scm (gsl): Update to 1.16, disable parallel tests
    leading to a failure in vector.
 2013-10-13 16:26:12 +02:00
Ludovic Courtès a22dc0c49a Synchronize package descriptions with the Womb. 
* gnu/packages/algebra.scm,
  gnu/packages/aspell.scm,
  gnu/packages/autotools.scm,
  gnu/packages/base.scm,
  gnu/packages/bash.scm,
  gnu/packages/bison.scm,
  gnu/packages/cdrom.scm,
  gnu/packages/cflow.scm,
  gnu/packages/compression.scm,
  gnu/packages/cpio.scm,
  gnu/packages/cppi.scm,
  gnu/packages/ddrescue.scm,
  gnu/packages/dejagnu.scm,
  gnu/packages/ed.scm,
  gnu/packages/emacs.scm,
  gnu/packages/fdisk.scm,
  gnu/packages/freeipmi.scm,
  gnu/packages/gawk.scm,
  gnu/packages/gcal.scm,
  gnu/packages/gcc.scm,
  gnu/packages/gdb.scm,
  gnu/packages/gdbm.scm,
  gnu/packages/gettext.scm,
  gnu/packages/ghostscript.scm,
  gnu/packages/global.scm,
  gnu/packages/gnunet.scm,
  gnu/packages/gnupg.scm,
  gnu/packages/gnutls.scm,
  gnu/packages/gperf.scm,
  gnu/packages/gprolog.scm,
  gnu/packages/groff.scm,
  gnu/packages/grub.scm,
  gnu/packages/gsasl.scm,
  gnu/packages/guile.scm,
  gnu/packages/gv.scm,
  gnu/packages/help2man.scm,
  gnu/packages/idutils.scm,
  gnu/packages/indent.scm,
  gnu/packages/less.scm,
  gnu/packages/libidn.scm,
  gnu/packages/libsigsegv.scm,
  gnu/packages/libunistring.scm,
  gnu/packages/lightning.scm,
  gnu/packages/linux.scm,
  gnu/packages/lsh.scm,
  gnu/packages/m4.scm,
  gnu/packages/mail.scm,
  gnu/packages/maths.scm,
  gnu/packages/multiprecision.scm,
  gnu/packages/nano.scm,
  gnu/packages/ncurses.scm,
  gnu/packages/nettle.scm,
  gnu/packages/ocrad.scm,
  gnu/packages/oggvorbis.scm,
  gnu/packages/parted.scm,
  gnu/packages/plotutils.scm,
  gnu/packages/pth.scm,
  gnu/packages/readline.scm,
  gnu/packages/recutils.scm,
  gnu/packages/rush.scm,
  gnu/packages/scheme.scm,
  gnu/packages/screen.scm,
  gnu/packages/shishi.scm,
  gnu/packages/smalltalk.scm,
  gnu/packages/system.scm,
  gnu/packages/texinfo.scm,
  gnu/packages/time.scm,
  gnu/packages/unrtf.scm,
  gnu/packages/version-control.scm,
  gnu/packages/wdiff.scm,
  gnu/packages/wget.scm,
  gnu/packages/which.scm,
  gnu/packages/xnee.scm,
  gnu/packages/zile.scm: Change value of the 'description' field to that
  of the Womb.
 2013-10-09 16:14:23 +02:00
Ludovic Courtès d6f10ca3fe gnu: units: Update to 2.02. 
* gnu/packages/maths.scm (units): Update to 2.02.
 2013-09-27 22:05:08 +02:00
Andreas Enge 78c7e3449f gnu: pspp: Update to 0.8.1. 
* gnu/packages/maths.scm (pspp): Update to 0.8.1.
 2013-09-25 11:08:16 +02:00
Andreas Enge 71e0f28856 gnu: gsl: Disable numerically unstable test on i686. 
* gnu/packages/maths.scm (gsl): Disable test.
 2013-08-31 12:18:53 +02:00
Andreas Enge 88bd1804a2 gnu: gsl: Move from module algebra to maths. 
* gnu/packages/algebra.scm (gsl): Move variable from here...
* gnu/packages/maths.scm (gsl): ...to here.
 2013-08-29 15:42:52 +02:00
Andreas Enge c9dfa3c721 gnu: Add pspp. 
* gnu/packages/maths.scm (pspp): New variable.
* THANKS: Thank John Darrington for help with debugging.
 2013-08-24 15:11:02 +02:00
Andreas Enge 8f8b24512a gnu: Add units. 
* gnu/packages/maths.scm: New module.
* gnu-system.am (GNU_SYSTEM_MODULES): Add module.
 2013-08-24 10:51:56 +02:00