e37775110e
gnu: ghc-old-time: Update Cabal file to r2.
...
* gnu/packages/haskell.scm (ghc-old-time): Update Cabal file to r2.
[arguments]: Remove unneeded "--allow-newer" configure flag.
2018-10-01 12:12:10 +02:00
d58fda7d65
gnu: ghc-monadrandom: Update to 0.5.1.1.
...
* gnu/packages/haskell.scm (ghc-monadrandom): Update to 0.5.1.1.
2018-10-01 12:12:10 +02:00
8b5d1142c2
gnu: ghc-mmorph: Update to 1.1.2.
...
* gnu/packages/haskell.scm (ghc-mmorph): Update to 1.1.2.
2018-10-01 12:12:10 +02:00
c18122265e
gnu: ghc-microlens-th: Update to 0.4.2.2.
...
* gnu/packages/haskell.scm (ghc-microlens-th): Update to 0.4.2.2.
[inputs]: Add ghc-th-abstraction.
2018-10-01 12:12:10 +02:00
acf1327130
gnu: ghc-generics-sop: Update to 0.3.2.0.
...
* gnu/packages/haskell.scm (ghc-generics-sop): Update to 0.3.2.0.
2018-10-01 12:12:10 +02:00
95415545ab
gnu: ghc-foundation: Update to 0.0.21.
...
* gnu/packages/haskell.scm (ghc-foundation): Update to 0.0.21.
[arguments]: Add a phase to create missing "Setup.hs" file.
2018-10-01 12:12:10 +02:00
e95cc1087a
gnu: Add ghc-bsb-http-chunked.
...
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked): New variable.
2018-10-01 12:12:10 +02:00
ecefe4ce87
gnu: ghc-ansi-terminal: Update to 0.8.0.4.
...
* gnu/packages/haskell.scm (ghc-ansi-terminal): Update to 0.8.0.4.
[inputs]: Add ghc-colour.
2018-10-01 12:12:10 +02:00
8642b86a00
gnu: hscolour: Update to 1.24.4.
...
* gnu/packages/haskell.scm (hscolour): Update to 1.24.4.
2018-10-01 12:12:10 +02:00
e09ef4fcca
gnu: ghc-zlib: Relax test framework dependency constraints.
...
* gnu/packages/haskell.scm (ghc-zlib)[arguments]: Remove "--allow-newer"
configure flag and add a phase that removes dependency version constraints
from some of the test frameworks.
2018-10-01 12:12:10 +02:00
6c76f51f96
gnu: ghc-xhtml: Update to 3000.2.2.1.
...
* gnu/packages/haskell-web.scm (ghc-xhtml): Update to 3000.2.2.1.
2018-10-01 12:12:10 +02:00
061832f1f9
gnu: ghc-wl-pprint: Update to 1.2.1.
...
* gnu/packages/haskell.scm (ghc-wl-pprint): Update to 1.2.1.
2018-10-01 12:12:10 +02:00
c325dde270
gnu: ghc-utf8-string: Update Cabal file to r3.
...
* gnu/packages/haskell.scm (ghc-utf8-string): Update Cabal file to r3.
[arguments]: Remove unneeded "--allow-newer" configure flag.
2018-10-01 12:12:10 +02:00
f871a55502
gnu: ghc-unliftio-core: Update Cabal file to r1.
...
* gnu/packages/haskell.scm (ghc-unliftio-core): Update Cabal file to r1.
2018-10-01 12:12:10 +02:00
32a9a38087
gnu: ghc-unix-compat: Update to 0.5.1.
...
* gnu/packages/haskell.scm (ghc-unix-compat): Update to 0.5.1.
2018-10-01 12:12:09 +02:00
06dae8ffe9
gnu: ghc-unexceptionalio: Update to 0.4.0.
...
* gnu/packages/haskell.scm (ghc-unexceptionalio): Update to 0.4.0.
2018-10-01 12:12:09 +02:00
58c102e08d
gnu: ghc-unbounded-delays: Update to 0.1.1.0.
...
* gnu/packages/haskell.scm (ghc-unbounded-delays): Update to 0.1.1.0.
2018-10-01 12:12:09 +02:00
d7f14885bb
gnu: ghc-transformers-compat: Update to 0.6.2.
...
* gnu/packages/haskell.scm (ghc-transformers-compat): Update to 0.6.2.
2018-10-01 12:12:09 +02:00
5fe52835d9
gnu: ghc-th-abstraction: Update to 0.2.8.0.
...
* gnu/packages/haskell.scm (ghc-th-abstraction): Update to 0.2.8.0.
2018-10-01 12:12:09 +02:00
4112a2e7c4
gnu: ghc-stringbuilder: Update to 0.5.1.
...
* gnu/packages/haskell.scm (ghc-stringbuilder): Update to 0.5.1.
2018-10-01 12:12:09 +02:00
c2e393cccb
gnu: ghc-simple-reflect: Update to 0.3.3.
...
* gnu/packages/haskell.scm (ghc-simple-reflect): Update to 0.3.3.
2018-10-01 12:12:09 +02:00
42f2732e13
gnu: ghc-setlocale: Update to 1.0.0.8.
...
* gnu/packages/haskell.scm (ghc-setlocale): Update to 1.0.0.8.
2018-10-01 12:12:09 +02:00
30a8c0d81e
gnu: ghc-sdl: Update to 0.6.7.0.
...
* gnu/packages/haskell.scm (ghc-sdl): Update to 0.6.7.0.
2018-10-01 12:12:09 +02:00
e218220266
gnu: ghc-parser-combinators: Update to 1.0.0.
...
* gnu/packages/haskell.scm (ghc-parser-combinators): Update to 1.0.0.
2018-10-01 12:12:09 +02:00
62f97b1217
gnu: ghc-parallel: Update to 3.2.2.0.
...
* gnu/packages/haskell.scm (ghc-parallel): Update to 3.2.2.0.
2018-10-01 12:12:09 +02:00
12eb67dcc9
gnu: ghc-old-locale: Update Cabal file to r2.
...
* gnu/packages/haskell.scm (ghc-old-locale): Update Cabal file to r2.
[arguments]: Remove unneeded "--allow-newer" configure flag.
2018-10-01 12:12:09 +02:00
e433898d8c
gnu: ghc-network-info: Update to 0.2.0.10.
...
* gnu/packages/haskell.scm (ghc-network-info): Update to 0.2.0.10.
2018-10-01 12:12:09 +02:00
f06b5f23c0
gnu: ghc-microlens: Update to 0.4.9.1.
...
* gnu/packages/haskell.scm (ghc-microlens): Update to 0.4.9.1.
2018-10-01 12:12:09 +02:00
9959625056
gnu: ghc-ieee754: Update to 0.8.0.
...
* gnu/packages/haskell.scm (ghc-ieee754): Update to 0.8.0.
2018-10-01 12:12:09 +02:00
a3aaf87a99
gnu: ghc-happy: Update to 1.19.9.
...
* gnu/packages/haskell.scm (ghc-happy): Update to 1.19.9.
2018-10-01 12:12:09 +02:00
6b850af42d
gnu: ghc-geniplate-mirror: Update to 0.7.6.
...
* gnu/packages/haskell.scm (ghc-geniplate-mirror): Update to 0.7.6.
2018-10-01 12:12:09 +02:00
a7427ff778
gnu: ghc-entropy: Update to 0.4.1.1.
...
* gnu/packages/haskell-crypto.scm (ghc-entropy): Update to 0.4.1.1.
2018-10-01 12:12:08 +02:00
7d887a2cec
gnu: ghc-easy-file: Update to 0.2.2.
...
* gnu/packages/haskell.scm (ghc-easy-file): Update to 0.2.2.
2018-10-01 12:12:08 +02:00
d05d03dda0
gnu: ghc-colour: Update to 2.3.4.
...
* gnu/packages/haskell.scm (ghc-colour): Update to 2.3.4.
[arguments]: Disable tests.
2018-10-01 12:12:08 +02:00
0ff8558a4d
gnu: ghc-cmdargs: Update to 0.10.20.
...
* gnu/packages/haskell.scm (ghc-cmdargs): Update to 0.10.20.
2018-10-01 12:12:08 +02:00
d3cc0eb2f3
gnu: ghc-base-prelude: Update to 1.3.
...
* gnu/packages/haskell.scm (ghc-base-prelude): Update to 1.3.
2018-10-01 12:12:08 +02:00
6bacde7cd7
gnu: ghc-basement: Update to 0.0.8.
...
* gnu/packages/haskell.scm (ghc-basement): Update to 0.0.8.
2018-10-01 12:12:08 +02:00
988dee48d0
gnu: cabal-doctest: Update Cabal file to r1.
...
* gnu/packages/haskell.scm (cabal-doctest): Update Cabal file to r1.
2018-10-01 12:12:08 +02:00
f54f04756f
gnu: ghc-mtl: Remove built-in Haskell package.
...
* gnu/packages/agda.scm (agda)[inputs]: Remove ghc-mtl.
* gnu/packages/games.scm (raincat)[inputs]: Remove ghc-mtl.
* gnu/packages/haskell-check.scm (ghc-tasty-ant-xml, ghc-tasty-golden,
ghc-tasty, ghc-tasty-kat, ghc-tasty-rerun,
ghc-crypto-cipher-tests)[inputs]: Remove ghc-mtl.
* gnu/packages/haskell-crypto.scm (ghc-asn1-encoding, ghc-pem, ghc-x509,
ghc-x509-store, ghc-x509-validation, ghc-x509-system)[inputs]: Remove
ghc-mtl.
* gnu/packages/haskell-web.scm (ghc-http, ghc-http-conduit,
ghc-yesod-core)[inputs]: Remove ghc-mtl.
* gnu/packages/haskell.scm (ghc-convertible, ghc-libxml, ghc-cgi,
ghc-happy, ghc-haskell-src-exts, ghc-resourcet, cabal-install,
ghc-indents, ghc-regex-base, ghc-regex-tdfa-rc, ghc-trifecta,
ghc-zip-archive, ghc-logict, ghc-exceptions, ghc-smallcheck, ghc-syb,
ghc-fgl, ghc-chasingbottoms, ghc-parsec, ghc-megaparsec, ghc-edisonapi,
ghc-edisoncore, ghc-mmorph, ghc-ifelse, ghc-kan-extensions, ghc-lens,
ghc-cheapskate, ghc-free, ghc-adjunctions, ghc-equivalence, ghc-texmath,
ghc-texmath-for-pandoc-1, ghc-highlighting-kate, ghc-th-reify-many,
ghc-th-orphans, ghc-geniplate-mirror, ghc-conduit, ghc-filemanip,
ghc-juicypixels, ghc-hslua, ghc-hourglass, ghc-skylighting,
ghc-skylighting-for-pandoc-1, ghc-pandoc, ghc-pandoc-1,
ghc-pandoc-citeproc, ghc-regex-tdfa, ghc-stmonadtrans, ghc-constraints,
ghc-lifted-async, ghc-shelly, ghc-hslogger, ghc-json, shellcheck,
ghc-vector-algorithms, ghc-monad-par-extras, ghc-monad-par,
ghc-monadrandom, ghc-either, ghc-rebase, ghc-aws, ghc-monad-logger,
ghc-persistent, ghc-bytes, ghc-missingh, ghc-operational,
ghc-chart)[inputs]: Remove ghc-mtl.
(ghc-conduit-combinators)[native-inputs]: Remove ghc-mtl.
(ghc-mtl): Remove variable.
* gnu/packages/idris.scm (idris)[inputs]: Remove ghc-mtl.
* gnu/packages/tls.scm (ghc-tls)[inputs]: Remove ghc-mtl.
* gnu/packages/version-control.scm (darcs, git-annex)[inputs]: Remove
ghc-mtl.
* gnu/packages/wm.scm (xmonad, ghc-xmonad-contrib)[inputs]: Remove
ghc-mtl.
* gnu/packages/xml.scm (ghc-hxt)[inputs]: Remove ghc-mtl.
2018-10-01 12:12:08 +02:00
dde15fea25
gnu: ghc: Use GHC 8.4.3 as the default GHC.
...
* gnu/packages/haskell.scm (ghc): Switch to ghc-8.
2018-10-01 12:12:04 +02:00
0e2d3ce20e
gnu: sshuttle: Rely on $PATH to find a POSIX sh.
...
This fixes a regression introduced in commit
c32863e094
2018-09-30 21:15:23 +02:00
f2bc53af70
gnu: Add porechop.
...
* gnu/packages/bioinformatics.scm (porechop): New variable.
2018-09-30 14:09:48 -04:00
cebec8bd1c
gnu: font-culmus: Update to 0.133.
...
* gnu/packages/fonts.scm (font-culmus): Update to 0.133.
2018-09-30 15:46:46 +03:00
3b362c8a83
gnu: mtools: Update to 4.0.19.
...
* gnu/packages/mtools.scm (mtools): Update to 4.0.19.
2018-09-30 13:37:38 +03:00
17bea1803c
Revert "services: Add Gitolite."
...
This reverts commit 258a6d944e
2018-09-29 21:18:45 -04:00
e72ca4111f
gnu: linux-libre: Update to 4.18.11.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.11.
(%linux-libre-hash): Update hash.
2018-09-29 15:58:27 -04:00
92011cbf7e
gnu: linux-libre@4.14: Update to 4.14.73.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.73.
(%linux-libre-4.14-hash): Update hash.
2018-09-29 15:56:49 -04:00
63e98a4c41
gnu: linux-libre@4.9: Update to 4.9.130.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.130.
2018-09-29 15:56:16 -04:00
44fa365e77
gnu: linux-libre@4.4: Update to 4.4.159.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.159.
2018-09-29 15:55:23 -04:00
2a1267d3d7
gnu: isc-dhcp: Update bundled BIND to 9.11.4-P2.
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* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.4-P2.
2018-09-29 12:22:40 -04:00
81e69ba85d
gnu: BIND: Update to 9.12.2-P2.
...
* gnu/packages/dns.scm (isc-bind): Update to 9.12.2-P2.
2018-09-29 12:22:39 -04:00
bfb22078fd
gnu: pocl: Update to 1.2.
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* gnu/packages/opencl.scm (pocl): Update to 1.2.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-29 11:15:35 -04:00
6f91223fd4
gnu: Add tippecanoe.
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* gnu/packages/geo.scm (tippecanoe): New variable.
2018-09-29 12:39:48 +02:00
b0e2299ad8
gnu: Add osm2pgsql.
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* gnu/packages/geo.scm (osm2pgsql): New variable.
2018-09-29 12:39:42 +02:00
889e94e343
gnu: Add libosmium.
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* gnu/packages/geo.scm (libosmium): New variable.
2018-09-29 12:39:39 +02:00
8fa3451c6f
gnu: Add protozero.
...
* gnu/packages/geo.scm (protozero): New variable.
2018-09-29 12:39:37 +02:00
3bd7611e4a
gnu: Add imposm3.
...
* gnu/packages/geo.scm (imposm3): New variable.
2018-09-29 12:39:34 +02:00
be7c64ba2d
gnu: Add tegola.
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* gnu/packages/geo.scm (tegola): New variable.
2018-09-29 12:39:16 +02:00
ccccb467fb
gnu: mcabber: Update to 1.1.0
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* gnu/packages/messaging.scm (mcabber): Update to 1.1.0
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-28 23:28:03 +02:00
258a6d944e
services: Add Gitolite.
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* gnu/services/version-control.scm (<gitolite-configuration>,
<gitolite-rc-file>): New record types.
(gitolite-accounts, gitolite-activation): New procedures.
(gitolite-service-type): New variables.
* gnu/tests/version-control.scm (%gitolite-test-admin-keypair, %gitolite-os,
%test-gitolite): New variables.
(run-gitolite-test): New procedure.
* doc/guix.texi (Version Control): Document the gitolite service.
2018-09-28 21:00:18 +01:00
595af457ae
gnu: Modify the gitolite package to support the Guix service.
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Previously the gitolite package worked, but there were problems using it for
the service where you might have a minimal PATH. This commit patches the
source and scripts where possible to use store paths, and also wraps the
gitolite script to handle the harder dependencies.
* gnu/packages/version-control.scm (gitolite)[arguments]: Add more patching to
the patch-scripts phase, and add two new phases (patch-source and
wrap-scripts).
[inputs]: Add coreutils, findutils and inetutils.
2018-09-28 21:00:18 +01:00
02817df07e
gnu: libreoffice: Update to 6.1.2.1.
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* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.2.1.
2018-09-28 18:23:01 +02:00
31f0fc612f
gnu: rng-tools: Update to 6.5.
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* gnu/packages/linux.scm (rng-tools): Update to 6.5.
2018-09-28 18:23:01 +02:00
f289820c31
gnu: rng-tools: Don't use unstable tarball.
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* gnu/packages/linux.scm (rng-tools)[source]: Use GIT-FETCH.
2018-09-28 18:23:01 +02:00
c6b772a059
gnu: rng-tools: Update home page.
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* gnu/packages/linux.scm (rng-tools)[home-page]: Set to URL mentioned in
legacy wiki.
2018-09-28 18:23:00 +02:00
87c3961871
gnu: newsboat: Update to 2.13.
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* gnu/packages/syndication.scm (newsboat): Update to 2.13.
2018-09-28 18:23:00 +02:00
4353981eb0
tests: Add missing copyright statement.
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This is a follow-up to commit 3b97a1779f
2018-09-28 18:23:00 +02:00
29bdfe1367
gnu: Krita: Update to 4.1.3.
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* gnu/packages/kde.scm (krita): Update to 4.1.3.
2018-09-28 11:08:12 -04:00
7edfcd61a1
gnu: httpd: Update to 2.4.35.
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* gnu/packages/web.scm (httpd): Update to 2.4.35.
2018-09-28 14:22:52 +02:00
5abcb1b0e6
gnu: guix: Update to 7fed935.
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* gnu/packages/package-management.scm (guix): Update to 7fed935
2018-09-28 00:30:38 +02:00
a4764ff00a
gnu: python-fakeredis: Edit description.
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* gnu/packages/databases.scm (python-fakeredis)[description]:
Fix (upstream) typo. Get carried away.
2018-09-28 00:01:43 +02:00
5478ab1ece
gnu: mbpfan: Don't use unstable tarball.
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* gnu/packages/linux.scm (mbpfan)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-28 00:01:43 +02:00
697c584665
gnu: mbpfan: Update to 2.1.0.
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* gnu/packages/linux.scm (mbpfan): Update to 2.1.0.
2018-09-28 00:01:43 +02:00
c32863e094
gnu: sshuttle: Patch FHS assumptions.
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Reported-By: Nam Nguyen <namn@berkeley.edu>
* gnu/packages/vpn.scm (sshuttle)[arguments]: Set correct paths to 'env'
and 'sh'.
2018-09-28 00:01:43 +02:00
363d7d6608
gnu: yoshimi: Update to 1.5.9.
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* gnu/packages/music.scm (yoshimi): Update to 1.5.9.
2018-09-27 21:52:07 +02:00
ea1a360199
gnu: emacs-ert-runner: Do not use package name in directory.
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* gnu/packages/emacs.scm (emacs-ert-runner)[arguments]: Use the upstream name
instead of the Guix package name in the "install-executable" phase.
This is a follow-up to commit 5c8031ff73
2018-09-27 20:02:55 +02:00
de1158d53f
gnu: eolie: Update to 0.9.38.
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* gnu/packages/gnome.scm (eolie): Update to 0.9.38.
2018-09-27 19:56:31 +02:00
1d1e4f8f9c
gnu: linux-libre: Update to 4.18.10.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.10.
(%linux-libre-hash): Update hash.
2018-09-27 05:53:46 -04:00
e0b6085a7f
gnu: linux-libre@4.14: Update to 4.14.72.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.72.
(%linux-libre-4.14-hash): Update hash.
2018-09-27 05:52:52 -04:00
202190ec39
gnu: linux-libre@4.9: Update to 4.9.129.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.129.
2018-09-27 05:52:00 -04:00
e07cb04d40
gnu: linux-libre@4.4: Update to 4.4.158.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.158.
2018-09-27 05:51:20 -04:00
c4a3ea3885
gnu: mame: Update to 0.202.
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* gnu/packages/emulators.scm (mame): Update to 0.202.
2018-09-27 09:51:00 +02:00
428d2ca2ec
gnu: youtube-dl: Update to 2018.09.18.
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* gnu/packages/video.scm (youtube-dl): Update to 2018.09.18.
2018-09-27 03:51:07 +02:00
b733dbc0fb
gnu: python-setproctitle: Use INVOKE.
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* gnu/packages/python.scm (python-setproctitle)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-09-27 03:51:07 +02:00
3d190d6a21
gnu: dico: Update to 2.7.
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* gnu/packages/dico.scm (dico): Update to 2.7.
[arguments]: Work around dodgy test in 'check' phase.
2018-09-27 03:51:06 +02:00
af44f05af7
gnu: perl-net-dns: Update to 1.18.
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* gnu/packages/networking.scm (perl-net-dns): Update to 1.18.
2018-09-27 03:51:06 +02:00
6f52db2455
gnu: perl-catalyst-runtime: Update to 5.90119.
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* gnu/packages/web.scm (perl-catalyst-runtime): Update to 5.90119.
2018-09-27 03:51:06 +02:00
a9994b2735
gnu: perl-crypt-openssl-rsa: Update to 0.31.
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* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Update to 0.31.
2018-09-27 03:51:06 +02:00
e15ede6e28
gnu: enlightenment: Fix initial locale and keyboard selection.
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* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In
'set-system-actions', set absolute file name to 'locale' and 'xorg.lst'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-26 23:40:37 +02:00
09b7300c01
services: virtual-terminal: Write to "default_utf8" only if necessary.
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Fixes a bug in containers whereby 'virtual-terminal' would always fail
to start because writing to /sys/…/default_utf8 would fail with EROFS.
* gnu/services/base.scm (virtual-terminal-service-type): Read from
"default_utf8" before attempting to write to it.
2018-09-26 23:40:37 +02:00
23784f0c33
services: udev: Don't attempt to read "modules.devname" from a container.
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Fixes <https://bugs.gnu.org/32814 >.
Reported by Julien Lepiller <julien@lepiller.eu>.
* gnu/services/base.scm (udev-shepherd-service)[start]: Check whether
DIRECTORY exists and skip 'make-static-device-nodes' call if it doesn't.
2018-09-26 23:40:37 +02:00
a56c4eb8f4
services: shepherd: Add workaround for 0.5.0 in containers.
...
* gnu/services/shepherd.scm (%containerized-shepherd-service): New service.
* gnu/system.scm (essential-services): Use it when CONTAINER? is true.
2018-09-26 23:40:36 +02:00
6f03b08089
services: dhcp-client: Use 'read-pid-file'.
...
* gnu/services/networking.scm (dhcp-client-service-type)[start]: Use
'read-pid-file' instead of the custom and possibly infinite loop.
2018-09-26 23:40:36 +02:00
2a5f2b1f75
gnu: Remove incorrect Emacs package deprecations.
...
This is a followup to 5c8031ff73
2018-09-26 23:40:36 +02:00
4245ddcbc9
guix system: Load all services on reconfigure, not just stopped ones.
...
This uses the 'replacement' service slot introduced in the Shepherd
version 0.5.0.
* gnu/services/shepherd.scm (shepherd-service-upgrade): Return a list of
services that need to be restarted to complete their upgrade.
* guix/scripts/system.scm (call-with-service-upgrade-info): Rename an internal
variable to reflect the change to shepherd-service-upgrade.
(upgrade-shepherd-services): Call 'load-services/safe' instead of
'load-services'. Print a message about services that need to be
manually restarted.
* gnu/services/herd.scm (load-services/safe): New procedure.
* doc/guix.texi (Invoking guix system): Document the new behaviour.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-09-26 23:40:36 +02:00
9bd85a785f
gnu: shepherd: Update to 0.5.0.
...
* gnu/packages/admin.scm (shepherd): Update to 0.5.0.
2018-09-26 23:40:36 +02:00
0661912827
Fix URL in emacs-magit and emacs-groovy-modes.
...
* gnu/packages/emacs.scm (emacs-magit)[source]: Fix URL.
* gnu/packages/emacs.scm (emacs-groovy-modes)[source]: Fix URL.
2018-09-26 10:37:51 +02:00
fe73352e80
gnu: linux-libre: Enable SHPC PCI Hotplug driver, now built-in only.
...
Fixes <https://bugs.gnu.org/32840 >.
* gnu/packages/aux-files/linux-libre/4.18-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf: Add
CONFIG_HOTPLUG_PCI_SHPC=y, plus updates made by 'make oldconfig'.
2018-09-25 23:17:20 -04:00
6d32887937
gnu: icecat: Rebundle NSPR and NSS [security fix].
...
Works around <https://bugs.gnu.org/32833 >.
* gnu/packages/gnuzilla.scm (icecat)[source]: In snippet, don't remove NSS.
[inputs]: Remove 'nspr' and 'nss'.
[arguments]: Remove --with-system-{nspr,nss} from configure flags.
2018-09-25 19:59:08 -04:00
94e96f7f68
gnu: icecat: Unbundle libevent, libogg, and libvorbis.
...
* gnu/packages/patches/icecat-use-system-media-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Add
another hunk to enable removal of libevent.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. In the snippet, add
libevent, libogg, libvorbis, and libtremor to the list of bundled libraries to
remove. Add a comment regarding theora. Remove comments regarding unbundling
cairo, which is no longer supported.
[inputs]: Add libevent, libogg, and libvorbis.
[arguments]: Add --with-system-{libevent,ogg,vorbis} to configure flags.
Add custom bootstrap phase. Add comments.
2018-09-25 19:59:06 -04:00
257e324791
gnu: icecat: Unbundle graphite2 and harfbuzz.
...
* gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch: New file.
* gnu/packages/patches/icecat-use-system-graphite2.patch,
gnu/packages/patches/icecat-use-system-harfbuzz.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add new patch. Delete
bundled graphite2 and harfbuzz in snippet.
[inputs]: Add graphite2 and harfbuzz.
[arguments]: Add --with-system-{graphite2,harfbuzz} to configure flags.
2018-09-25 19:58:58 -04:00
3b97a1779f
services: Add Varnish service.
...
* gnu/services/web.scm (<varnish-configuration>): New record type.
(%varnish-accounts, %varnish-service-type): New variables.
(varnish-shepherd-service): New procedure.
* gnu/tests/web.scm (%varnish-vcl, %varnish-os): New variables.
(%test-varnish): New test.
* doc/guix.texi (Web Services): Document it.
2018-09-26 00:33:01 +02:00
5f33e9063b
gnu: varnish: Use absolute file name of "rm".
...
* gnu/packages/web.scm (varnish)[arguments]: Rename 'patch-bin-sh-phase to
'use-absolute-file-names and add substitution.
2018-09-26 00:33:01 +02:00
e789b85841
gnu: Add Node LTS.
...
* gnu/packages/node.scm (node)[arguments]: Adjust 'patch-files' phase to
ignore missing files.
(node-lts): New public variable.
2018-09-26 00:33:01 +02:00
020c4ef18e
gnu: node: Delete expired tests.
...
* gnu/packages/node.scm (node)[arguments]: Delete tests for which the TLS
certificates have expired.
2018-09-26 00:33:01 +02:00
a0c9ba1d64
gnu: webkitgtk: Remove obsolete phase.
...
* gnu/packages/webkit.scm (webkitgtk)[arguments]: Remove #:phases.
(webkitgtk-2.22)[arguments]: Don't reference removed phase.
2018-09-26 00:33:01 +02:00
9b1bb75781
gnu: gspell: Update to 1.8.1.
...
* gnu/packages/gnome.scm (gspell): Update to 1.8.1.
[propagated-inputs]: Change ENCHANT-1.6 to ENCHANT.
2018-09-26 00:33:01 +02:00
c1d59b3c2a
gnu: enchant: Update to 2.2.3.
...
* gnu/packages/enchant.scm (enchant): Update to 2.2.3.
[arguments]: Add "--enable-relocatable" to #:configure-flags.
[native-inputs]: Add UNITTEST-CPP.
(enchant-1.6): New public variable.
* gnu/packages/fcitx.scm (fcitx)[inputs]: Change ENCHANT to ENCHANT-1.6.
* gnu/packages/gnome.scm (gspell): Likewise.
* gnu/packages/mate.scm (pluma): Likewise.
* gnu/packages/gtk.scm (gtkspell3)[propagated-inputs]: Likewise.
[inputs]: Remove duplicate ENCHANT.
2018-09-26 00:33:01 +02:00
9a59b29411
gnu: enchant: Propagate Glib.
...
* gnu/packages/enchant.scm (enchant)[inputs]: Move GLIB ...
[propagated-inputs]: ... here. New field.
2018-09-26 00:33:01 +02:00
18ef85b64a
gnu: enchant: Don't build libenchant.a.
...
* gnu/packages/enchant.scm (enchant)[arguments]: Add #:configure-flags.
2018-09-26 00:33:01 +02:00
52b87855ea
gnu: enchant: Update home page.
...
* gnu/packages/enchant.scm (enchant)[home-page]: Set to URL mentioned on the
legacy home page.
2018-09-26 00:33:00 +02:00
a7a887718a
gnu: diffoscope: Update to 102.
...
* gnu/packages/package-management.scm (diffoscope): Update to 102.
2018-09-25 18:45:50 +02:00
35f903778a
gnu: Add guile-next.
...
* gnu/packages/guile.scm (guile-next): Rewrite to refer to Guile 3.0.
2018-09-25 18:45:50 +02:00
38e1095d82
gnu: python-wsgiproxy2: Update to 0.4.5.
...
* gnu/packages/python-web.scm (python-wsgiproxy2): Update to 0.4.5.
2018-09-25 11:46:54 +02:00
06e6b17bd7
gnu: python-pexpect: Use INVOKE.
...
* gnu/packages/python.scm (python-pexpect)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-09-25 11:46:54 +02:00
6d7ca74ba6
gnu: 389-ds-base: Fix build.
...
* gnu/packages/openldap.scm (389-ds-base)[inputs]: Add openssl.
2018-09-25 11:46:54 +02:00
238d950b79
gnu: python-nose-timer: Update to 0.7.3.
...
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.3.
2018-09-25 11:46:08 +02:00
d6ab1d0ac3
gnu: python-flask-login: Update to 0.4.1.
...
* gnu/packages/python-web.scm (python-flask-login): Update to 0.4.1.
[arguments]: Run the test suite.
[propagated-inputs]: Add python-flask.
[native-inputs]: Add test dependencies.
2018-09-25 11:46:08 +02:00
bbc69023d8
gnu: Add python-semantic-version.
...
* gnu/packages/python.scm (python-semantic-version)
(python2-semantic-version): New public variables.
2018-09-25 11:46:08 +02:00
79374801d0
gnu: python-flask-login: Don't use unstable tarball.
...
* gnu/packages/python-web.scm (python-flask-login)[source]:
Use GIT-FETCH and GIT-FILE-NAME.
2018-09-25 11:46:08 +02:00
932839ff12
gnu: ibus: Update to 1.5.19.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.19.
[arguments]: Add configure flags to disable Python 2 support while building
Python 3 bindings; adjust make flags; add phase prepare-ucd-dir.
[inputs]: Replace python2-pygobject with python-pygobject; replace python-2
with python.
[native-inputs]: Add unicode files.
2018-09-25 11:20:32 +02:00
f1ea0759f4
gnu: qjackctl: Update to 0.5.4.
...
* gnu/packages/audio.scm (qjackctl): Update to 0.5.4.
2018-09-25 08:18:51 +02:00
116af86f14
gnu: octave: Add a search path for CURLOPT_CAPATH.
...
* gnu/packages/maths.scm (octave)[native-search-paths]: New field.
2018-09-24 21:42:12 -04:00
a68b451423
gnu: Add gandi.cli.
...
* gnu/packages/networking.scm (gandi.cli): New public variable.
2018-09-24 18:10:48 +02:00
e6dcf9ca5f
gnu: rename: Update to 1.00.
...
* gnu/packages/admin.scm (rename): Update to 1.00.
[arguments]: Wrap executable to find its own library.
2018-09-24 18:10:48 +02:00
4cb4af797a
gnu: lxterminal: Update to 0.3.2.
...
* gnu/packages/lxde.scm (lxterminal): Update to 0.3.2.
2018-09-24 18:10:48 +02:00
25ab91c85c
gnu: gloox: Update to 1.0.21.
...
* gnu/packages/messaging.scm (gloox): Update to 1.0.21.
2018-09-24 18:10:47 +02:00
b44a18c8f2
gnu: libmesode: Update to 0.9.2.
...
* gnu/packages/messaging.scm (libmesode): Update to 0.9.2.
2018-09-24 18:10:47 +02:00
c60d5a2528
gnu: libmesode: Don't use unstable tarball.
...
* gnu/packages/messaging.scm (libmesode)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-24 18:10:47 +02:00
8ae540a2c0
gnu: ocaml-ssl: Don't use unstable tarball.
...
* gnu/packages/ocaml.scm (ocaml-ssl)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-24 18:10:46 +02:00
000147811b
gnu: eolie: Update to 0.9.37.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.37.
[source]: Fetch from gitlab.
[build-system]: Use meson-build-system.
[arguments]: Remove custom phases; set #:glib-or-gtk?.
[native-inputs]: Remove meson-for-build and ninja; add glib:bin.
[inputs]: Add python-pyfxa and python-pycrypto.
2018-09-24 16:21:11 +02:00
f45bb3cc0f
gnu: Add python-pyfxa.
...
* gnu/packages/python-web.scm (python-pyfxa): New variable.
2018-09-24 16:20:51 +02:00
084e14cc37
gnu: Add python-pybrowserid.
...
* gnu/packages/python-web.scm (python-pybrowserid): New variable.
2018-09-24 16:20:42 +02:00
0750f344ec
gnu: Add python-hawkauthlib.
...
* gnu/packages/python-web.scm (python-hawkauthlib): New variable.
2018-09-24 16:20:32 +02:00
d08b325843
gnu: Add python-grequests.
...
* gnu/packages/python-web.scm (python-grequests): New variable.
2018-09-24 16:20:19 +02:00
53c64d7c93
gnu: m17n-lib: Update to 1.8.0.
...
* gnu/packages/emacs.scm (m17n-lib): Update to 1.8.0.
2018-09-24 17:46:47 +05:30
94282358fd
gnu: m17n-db: Update to 1.8.0.
...
* gnu/packages/emacs.scm (m17n-db): Update to 1.8.0.
2018-09-24 17:46:18 +05:30
e72702475d
gnu: Add r-bseqsc.
...
* gnu/packages/bioinformatics.scm (r-bseqsc): New variable.
2018-09-24 13:31:20 +02:00
28829c040f
gnu: Add r-cssam.
...
* gnu/packages/bioinformatics.scm (r-cssam): New variable.
2018-09-24 13:31:20 +02:00
a434730f2e
gnu: Add r-xbioc.
...
* gnu/packages/bioinformatics.scm (r-xbioc): New variable.
2018-09-24 13:31:20 +02:00
5c8031ff73
gnu: Prefix all Emacs packages with "emacs-".
...
* gnu/packages/emacs.scm: Prefix all Emacs packages with "emacs-".
This is to enforce consistency and so that `emacs-packages?' can reliably
detect Emacs packages based on the "emacs-" prefix.
2018-09-24 12:56:04 +02:00
cd8aa06093
gnu: python-networkx: Use HTTPS home page.
...
* gnu/packages/python.scm (python-networkx)[home-page]: Use HTTPS.
2018-09-24 00:34:03 +02:00
dd29bd4ebc
gnu: python-networkx: Update to 2.2.
...
* gnu/packages/python.scm (python-networkx): Update to 2.2.
2018-09-24 00:34:02 +02:00
68cbec027e
gnu: python-decorator: Update to 4.3.0.
...
* gnu/packages/python.scm (python-decorator): Update to 4.3.0.
[arguments]: Run the test suite.
2018-09-24 00:34:02 +02:00
3715e79ec8
gnu: python-marshmallow: Update to 3.0.0b14.
...
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b14.
2018-09-24 00:34:01 +02:00
a42b68480b
gnu: libiptcdata: Update to 1.0.5.
...
* gnu/packages/image.scm (libiptcdata): Update to 1.0.5.
[home-page]: Follow Debian's maintained upstream.
2018-09-24 00:34:01 +02:00
c30fd002c8
gnu: virtualgl: Update to 2.6.
...
* gnu/packages/gl.scm (virtualgl): Update to 2.6.
[inputs]: Add libxtst.
2018-09-24 00:34:01 +02:00
2c36baa56f
gnu: parallel: Update to 20180922.
...
* gnu/packages/parallel.scm (parallel): Update to 20180922.
2018-09-24 00:34:00 +02:00
2f7ad2a788
gnu: workrave: Use Guix's built-in bootstrap phase.
...
* gnu/packages/gnome.scm (workrave)[arguments]: Remove
'autoconf' phase.
2018-09-24 00:34:00 +02:00
899e1974a6
gnu: python-gitdb: Update to 2.0.4.
...
* gnu/packages/version-control.scm (python-gitdb): Update to 2.0.4.
[arguments]: Replace AND with equivalent but more 'accurate' BEGIN.
2018-09-24 00:34:00 +02:00
0604d3cfce
gnu: nano: Update to 3.1.
...
* gnu/packages/nano.scm (nano): Update to 3.1.
2018-09-24 00:33:59 +02:00
25706b8fc9
gnu: fping: Use HTTPS home page.
...
* gnu/packages/networking.scm (fping)[home-page]: Use HTTPS.
2018-09-24 00:33:59 +02:00
8fa361ce63
gnu: fping: Update to 4.1.
...
* gnu/packages/networking.scm (fping): Update to 4.1.
2018-09-24 00:33:59 +02:00
fce2254711
vm: Use "cache=loose" for all 9p mounts.
...
This significantly improves read throughput when running things like
"guix hash -r ...".
* gnu/system/vm.scm (%linux-vm-file-systems): Add 'flags' for "store".
Add "cache=loose" to every file system.
2018-09-23 23:34:17 +02:00
b5460d95e9
vm: Disable deduplication for 'guix system vm-image'.
...
* gnu/system/vm.scm (qemu-image): Pass #:deduplicate? #f to
'root-partition-initializer'.
2018-09-23 23:34:17 +02:00
88600acc93
system: Mention '--skip-checks' in initrd diagnostics.
...
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Add note
about '--skip-checks'.
2018-09-23 23:34:16 +02:00
e10bf49668
gnu: Add emacs-synosaurus.
...
* gnu/packages/emacs.scm (emacs-synosaurus): New variable.
2018-09-23 17:19:56 +02:00
94676ded5f
gnu: xpra: Update to 2.3.4.
...
* gnu/packages/xorg.scm (xpra): Update to 2.3.4.
2018-09-23 13:15:38 +02:00
84b334362e
gnu: eolie: Use webkitgtk-2.22.
...
* gnu/packages/gnome.scm (eolie)[native-inputs]: Add gcc-7:lib.
[inputs]: Replace webkitgtk with webkitgtk-2.22.
[arguments]: Add "gcc:lib" to the list of libraries to add to
LD_LIBRARY_PATH. Use invoke.
2018-09-23 04:55:54 -04:00
480d39a600
gnu: epiphany: Use webkitgtk-2.22.
...
* gnu/packages/gnome.scm (epiphany)[native-inputs]: Add gcc-7.
[inputs]: Replace webkitgtk with webkitgtk-2.22.
2018-09-23 01:25:21 -04:00
844cc6f876
gnu: webkitgtk: Add version 2.22.2.
...
* gnu/packages/webkit.scm (webkitgtk-2.22): New variable.
2018-09-23 01:25:09 -04:00
21280a8cd8
gnu: Add Go 1.11.
...
* gnu/packages/golang.scm (go-1.11): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-22 14:30:13 -04:00
ae71cd8ac9
gnu: icecat: Add fixes from upstream mozilla-esr60 [security fixes].
...
Includes fixes for CVE-2018-12383 and CVE-2018-12385.
* gnu/packages/patches/icecat-CVE-2018-12383.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to apply
cleanly to IceCat 60.
* gnu/packages/gnuzilla.scm (mozilla-patch): Update to fetch from
mozilla-esr60.
(icecat): Add selected changesets from upstream mozilla-esr60.
2018-09-22 13:48:32 -04:00
91294b5361
Revert 'gnu: rust: Remove unused "ar" setting.'.
...
Some versions of Rust do need it and others complain about it.
For now, revert the removal entirely.
This reverts commit ec944a1de9
2018-09-22 10:09:47 +02:00
05fb1e0017
gnu: hmmer: Update to 3.2.1.
...
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1.
[origin]: Remove patch.
[license]: Change to BSD-3.
[supported-systems]: New field.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-22 09:16:47 +10:00
78b7b9dbe9
gnu: snap: Update to 4.2.1.4.
...
* gnu/packages/education.scm (snap): Update to 4.2.1.4.
2018-09-21 22:22:09 +02:00
a255142af3
gnu: emacs-org: Update to 9.1.14.
...
* gnu/packages/emacs.scm (emacs-org): Update to 9.1.14.
2018-09-21 21:55:28 +02:00
1302837f6b
gnu: workrave: Update to 1.10.21.
...
* gnu/packages/gnome.scm (workrave): Update to 1.10.21.
[source]: Use GIT-FILE-NAME.
2018-09-21 20:32:27 +02:00
43726c522f
gnu: emacs-password-store: Update to 1.7.3.
...
* gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.3.
2018-09-21 20:32:27 +02:00
10fadd1e3d
gnu: filezilla: Update to 3.37.1.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.37.1.
2018-09-21 19:52:27 +02:00
9a32bdf8a9
gnu: wxwidgets: Update to 3.0.4.
...
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.4.
2018-09-21 19:52:26 +02:00
199d72e327
gnu: python-pyparsing: Update to 2.2.1.
...
* gnu/packages/python.scm (python-pyparsing): Update to 2.2.1.
[source]: Use PYPI-URI.
2018-09-21 19:52:26 +02:00
ec944a1de9
gnu: rust: Remove unused "ar" setting.
...
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "ar" setting.
2018-09-21 17:59:09 +02:00
7e27393f82
gnu: Add r-pore.
...
* gnu/packages/bioinformatics.scm (r-pore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-21 17:04:37 +02:00
45201bf245
gnu: hdf5-parallel-openmpi: Really enable parallel build.
...
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set
in the file H5pubconf.h.
* gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add
the "--enable-parallel" flag to the list of configure flags. Remove
the incompatible "--enable-cxx" flag. Add 'mpi-setup' phase.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-21 17:04:37 +02:00
b0d1e60fff
gnu: hdf5: Allow for absence of utility script.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split'
phase to check for existence of h5fc script.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-21 17:04:37 +02:00
10e066f410
gnu: rust: Remove unused "localstatedir" setting.
...
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "localstatedir" setting.
2018-09-21 15:21:24 +02:00
118a084531
gnu: libfilezilla: Update to 0.13.2.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.2.
[source]: Use HTTPS.
2018-09-21 15:04:29 +02:00
41e551b2d3
gnu: python-pyparsing: Update home page.
...
* gnu/packages/python.scm (python-pyparsing)[home-page]: Update.
2018-09-21 15:03:49 +02:00
eacb5dc487
gnu: emacs-mu4e-conversation: Fix typo in description.
...
* gnu/packages/emacs.scm (emacs-mu4e-conversation)[description]:
Fix 'correspondant' typo.
2018-09-21 15:03:49 +02:00
93ab9a5d76
gnu: kodi: Use INVOKE.
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* gnu/packages/kodi.scm (kodi)[arguments]: Substitute INVOKE for SYSTEM*.
2018-09-21 15:03:48 +02:00
2aa137e261
gnu: crossguid: Use INVOKE.
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* gnu/packages/kodi.scm (crossguid)[arguments]: Substitute INVOKE for SYSTEM*.
2018-09-21 15:03:48 +02:00
e67ad5532f
gnu: icecat: Update to 60.2.0-gnu1 (pre-release).
...
* gnu/packages/gnuzilla.scm (icecat): Update to 60.2.0-gnu1.
[source]: Download pre-release from alpha.gnu.org. Remove obsolete patches.
Comment out the code to delete the bundled copies of libevent, cairo,
harfbuzz, and graphite2.
[inputs]: Use the latest ffmpeg. Comment out libevent, cairo, harfbuzz, and
graphite2.
[native-inputs]: Add rust and cargo.
[arguments]: Remove --enable-gio and --disable-gnomeui. Add --disable-stylo.
Comment out --with-system-{libevent,harfbuzz,graphite2}, --enable-system-cairo.
Import %cargo-build-system-modules. Add 'patch-cargo-checksums' phase.
* gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch,
gnu/packages/patches/icecat-bug-1413868-pt1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-09-21 07:16:02 -04:00
c5327efb97
gnu: libvpx: Add upstream security fix.
...
* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
2018-09-21 07:15:59 -04:00
6569549dfa
gnu: python-paramiko: Update to 2.4.2 [security fixes].
...
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.4.2.
2018-09-21 13:18:42 +02:00
101ad242be
gnu: python-paramiko: Use HTTPS home page.
...
* gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Use HTTPS.
2018-09-21 13:18:42 +02:00
a1d6610e84
gnu: python-rencode: Update to 1.0.5.
...
* gnu/packages/python.scm (python-rencode): Update to 1.0.5.
[arguments]: Add a 'delete-bogus-test' phase.
2018-09-21 13:18:42 +02:00
e36058634d
gnu: python-hdf4: Use INVOKE.
...
* gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-09-21 13:18:42 +02:00
6f05556ba7
gnu: s6: Update to 2.7.2.1.
...
* gnu/packages/skarnet.scm (s6): Update to 2.7.2.1.
2018-09-21 13:18:41 +02:00
174988fa05
gnu: perl-xml-compile: Update to 1.60.
...
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.60.
[propagated-inputs]: Add perl-carp, perl-scalar-list-utils, and
perl-types-serialiser.
2018-09-21 13:18:41 +02:00
1df40d3dbf
gnu: emacs-orgalist: Update to 1.9.
...
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.9.
2018-09-21 11:52:12 +02:00
3752b683dc
gnu: openscenegraph: Update to 3.6.3.
...
* gnu/packages/graphics.scm (openscenegraph): Update to 3.6.3.
[source]: Use GIT-FILE-NAME.
[inputs]: Remove unused pth and qtbase.
2018-09-21 10:25:33 +02:00
29ddbc5607
gnu: python-pydot: Update to 1.2.4.
...
* gnu/packages/graphviz.scm (python-pydot): Update to 1.2.4.
[arguments]: Run the test suite.
[native-inputs]: Add python-chardet.
2018-09-21 10:25:32 +02:00
1779aaa09a
Add 'GNU Guix' comment to all (gnu packages) headers.
...
* gnu/packages/debian.scm, gnu/packages/syndication.scm: Add comments.
2018-09-21 10:25:32 +02:00
4aa64e3a81
gnu: ubuntu-keyring: Update to 2018.09.18.1.
...
* gnu/packages/debian.scm (ubuntu-keyring): Update to 2018.09.18.1.
2018-09-21 10:25:32 +02:00
eeecbe09cc
gnu: perl-dbd-mysql: Update to 4.048.
...
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-21 10:25:31 +02:00
e0b07ccc1a
gnu: rust: Work around mtime bug in rust build helpers.
...
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[fix-mtime-bug]:
Delete.
[reset-timestamps-after-changes]: Modify.
(rust-1.24): Don't delete "fix-mtime-bug" since now it doesn't ever
get created.
2018-09-21 01:35:00 +02:00
1bfaae25fa
gnu: rust@1.20.0: Fix tests.
...
* gnu/packages/rust.scm (rust-1.23)[arguments]<#:phases>
[patch-cargo-tests, ignore-glibc-2.27-incompatible-test,fix-mtime-bug]: Move
to...
(rust-1.20): ... here.
2018-09-21 01:31:10 +02:00
83e8b1d794
gnu: linux-libre: Update to 4.18.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.9.
(%linux-libre-hash): Update hash.
2018-09-20 18:04:56 -04:00
c57a2a12b1
gnu: linux-libre@4.14: Update to 4.14.71.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.71.
(%linux-libre-4.14-hash): Update hash.
2018-09-20 18:04:48 -04:00
41d6afb266
gnu: linux-libre@4.9: Update to 4.9.128.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.128.
2018-09-20 18:04:42 -04:00
c6ede267e6
gnu: linux-libre@4.4: Update to 4.4.157.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.157.
2018-09-20 18:04:35 -04:00
ea2364621a
gnu: qbittorrent: Update to 4.1.3.
...
* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.3.
[inputs]: Use python-wrapper instead of python.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20 15:31:17 -04:00
f5c10a94ef
gnu: gprolog: Update to 1.4.5.
...
* gnu/packages/gprolog.scm (gprolog): Update to 1.4.5.
[source]: Add an alternate source URL.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20 15:27:43 -04:00
89ee8a6edf
gnu: rsem: Update to 1.3.1.
...
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1.
[source]: Fetch from git; remove patch; delete bundled samtools.
[arguments]: Pass make flags; adjust phases.
[inputs]: Remove ncurses and samtools-0.1; add htslib-1.3.
* gnu/packages/patches/rsem-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-20 17:55:26 +02:00
a235ea4f30
gnu: ghc-pandoc-citeproc: Update to 0.14.3.1.
...
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
2018-09-20 17:20:07 +02:00
e30397dddb
gnu: ghc-xml-conduit: Update to 1.8.0.1.
...
* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1.
[inputs]: Add ghc-doctest.
2018-09-20 17:20:02 +02:00
391fc11f0e
gnu: python2-scikit-learn: Fix check phase.
...
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]:
Override check phase to disable broken tests and pass environment variables.
2018-09-20 15:56:59 +02:00
26358ac5ab
gnu: Add r-parmigene.
...
* gnu/packages/cran.scm (r-parmigene): New variable.
2018-09-20 15:56:30 +02:00
3e12df7d71
gnu: Add emacs-dired-sidebar.
...
* gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
2018-09-20 13:29:29 +02:00
166b2c970e
gnu: eolie: Update home page.
...
* gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
2018-09-20 13:29:29 +02:00
9926b8f809
gnu: services: Add iptables service.
...
* gnu/services/networking.scm (<iptables-configuration>): New record type.
(iptables-service-type): New variable.
* gnu/tests/networking.scm (run-iptables-test): New procedure.
(%test-iptables): New variable.
* doc/guix.texi (Networking Services): Document it.
2018-09-20 13:09:55 +05:30
3e63a83c0f
gnu: u-boot: Use HTTPS home page.
...
* gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
2018-09-20 04:50:34 +02:00
84c7fbfd6d
gnu: ccid: Update to 1.4.30.
...
* gnu/packages/security-token.scm (ccid): Update to 1.4.30.
2018-09-20 04:50:34 +02:00
4eb161962f
gnu: opusfile: Update to 0.11.
...
* gnu/packages/xiph.scm (opusfile): Update to 0.11.
2018-09-20 04:50:33 +02:00
e61c2991e4
Use INVOKE in (gnu packages xdisorg).
...
* gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld)
[arguments]: Use INVOKE.
2018-09-20 04:17:04 +02:00
2385ecb224
Use INVOKE in (gnu packages shells).
...
* gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE...
(scsh)[arguments]: ...and also return #t from all phases.
2018-09-20 04:17:04 +02:00
9923d5a40f
gnu: Use INVOKE & return #t from Ruby package phases.
...
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-20 04:17:04 +02:00
4f66ae2899
gnu: ruby-heredoc-unindent: Fix typo in description.
...
* gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
2018-09-20 04:17:03 +02:00
7616d75fd6
Use INVOKE in (gnu packages telephony).
...
* gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
2018-09-20 04:17:03 +02:00
e564d33ce8
gnu: gourmet: Use HTTPS home page.
...
* gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
2018-09-20 04:17:03 +02:00
29a000b602
gnu: sg3-utils: Update to 1.44.
...
* gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
2018-09-20 04:17:02 +02:00
e266043e67
gnu: shotwell: Update to 0.28.4.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.28.4.
2018-09-19 17:31:49 -04:00
508d5c5fa8
gnu: OpenSC: Update to 0.19.0 [security fixes].
...
Fixes CVE-2018-{16391,16392,16393,16418,16419,16420,16421,16422,16423,16424,
16425,16426,16427}.
* gnu/packages/security-token.scm (opensc): Update to 0.19.0.
2018-09-19 15:08:00 -04:00
1d98b44ea6
gnu: sbcl-slynk: Fix the build.
...
* gnu/packages/lisp.scm (sbcl-slynk-boot0): Update to commit
cbf84c36c4eca8b032e3fd16177a7bc02df3ec4c.
[origin]<snippet>: Replace slynk/util references with the built system name
slynk-util. Remove compile-time invocations of slynk-require.
(sbcl-slynk-util): Inherit from sbcl-slynk-boot0.
[inputs]: Add sbcl-slynk-boot0.
[arguments]: Set an appropriate asd-file and asd-system-name.
(sbcl-slynk-arglists)[arguments]: Set an appropriate asdf-system-name.
(sbcl-slynk-fancy-inspector)[arguments]: Likewise.
(sbcl-slynk-package-fu)[arguments]: Likewise.
(sbcl-slynk-mrepl)[arguments]: Likewise.
(sbcl-slynk-trace-dialog)[arguments]: Likewise.
(sbcl-slynk-profiler)[arguments]: Likewise.
(sbcl-slynk-indentation)[arguments]: Likewise.
(sbcl-slynk-retro)[arguments]: Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19 18:25:28 +02:00
241358dc94
services: networking: Remove unbound variable reference in 'stop'.
...
* gnu/services/base.scm (static-networking-shepherd-service): Remove
spurious ":" in 'stop' method inadvertently introduced in commit
c9436025a9
2018-09-19 18:25:28 +02:00
7fd3082522
services: udev: Simplify 'start' method.
...
* gnu/services/base.scm (udev-shepherd-service)[start](find): Remove.
(udev): Hardwire the eudev file name.
Use 'fork+exec-command' instead of 'primitive-fork' and 'exec-command'.
2018-09-19 18:25:27 +02:00
4d679255da
gnu: glm: Update to 0.9.9.2.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19 15:20:21 +02:00
f6ae59c2e0
gnu: feh: Update to 2.28.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.28.
2018-09-19 15:20:21 +02:00
f03c4ec649
gnu: arpack-ng: Update to 3.6.3.
...
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
2018-09-19 15:20:21 +02:00
622ef2b90a
gnu: arpack-ng: Don't use unstable tarball.
...
* gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
2018-09-19 15:20:21 +02:00
c5c1e410cf
gnu: Reinstate xf86-video-ast.
...
* gnu/packages/patches/xf86-video-ast-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-ast): New public variable.
2018-09-19 15:20:21 +02:00
6c1a658414
gnu: rust@1.19.0: Install libtest.
...
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Build
libtest.
2018-09-19 14:41:01 +02:00
4a90fcf9e7
gnu: mrustc: Enable tests.
...
* gnu/packages/rust.scm (mrustc)[arguments]: Add #:test-target.
<#:phases>[install]: Don't install test output.
2018-09-19 14:41:01 +02:00
1cfcb841ed
gnu: git-credential-netrc: Add Git.pm to PERL5LIB.
...
* gnu/packages/version-control.scm (git)[credential-netrc]: Add Git.pm to PERL5LIB.
2018-09-19 09:07:12 +02:00
0058888c7e
gnu: Add guile-debbugs.
...
* gnu/packages/guile.scm (guile-debbugs): New variable.
2018-09-18 23:23:44 +02:00
32b3611375
gnu: Go 1.10: Update to 1.10.4.
...
* gnu/packages/golang.scm (go-1.10): Update to 1.10.4.
2018-09-18 15:30:03 -04:00
56c180750c
gnu: busybox: Update to 1.29.3.
...
* gnu/packages/busybox.scm (busybox): Update to 1.29.3.
2018-09-18 14:18:43 +02:00
d99051715a
gnu: xorriso: Update to 1.5.0.
...
* gnu/packages/cdrom.scm (xorriso): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
8190578fa0
gnu: libisofs: Update to 1.5.0.
...
* gnu/packages/cdrom.scm (libisofs): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
4999f45ea9
gnu: libburn: Update to 1.5.0.
...
* gnu/packages/cdrom.scm (libburn): Update to 1.5.0.
2018-09-18 13:50:32 +02:00
487cf5aaf6
gnu: rc: Simplify.
...
* gnu/packages/shells.scm (rc)[source]: Replace magic commit ID with the
tagged release. Use GIT-FILE-NAME.
[arguments]: Remove 'autoreconf' phase (relying on Guix's built-in
'bootstrap' phase instead) and adjust the ordering of 'patch-trip.rc'
accordingly.
2018-09-18 13:50:09 +02:00
7c0ed27a8b
gnu: ncmpc: Update to 0.30.
...
* gnu/packages/mpd.scm (ncmpc): Update to 0.30.
[arguments]: Add 'expand-C++-include-path' phase.
[inputs]: Add gcc-8.
2018-09-18 13:50:09 +02:00
8ecd843df5
gnu: exfat-utils: Update to 1.3.0.
...
* gnu/packages/mtools.scm (exfat-utils): Update to 1.3.0.
2018-09-18 13:50:09 +02:00
b22c44f1ea
gnu: cinnamon-desktop: Use Guix's built-in bootstrap phase.
...
* gnu/packages/cinnamon.scm (cinnamon-desktop)[arguments]: Remove
'autoconf' phase. Add 'skip-premature-configure' phase.
2018-09-18 13:49:23 +02:00
0edc232be9
gnu: gourmet: Use INVOKE.
...
* gnu/packages/nutrition.scm (gourmet)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-09-18 13:49:23 +02:00
56c240ba8c
gnu: Add confusion-mdl.
...
* gnu/packages/lisp.scm (confusion-mdl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-17 23:19:45 +02:00
d68aa41573
gnu: enlightenment: Update to 0.22.4.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.4.
2018-09-17 12:50:21 +02:00
ee127549a3
gnu: efl: Update to 1.21.1.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.21.1.
2018-09-17 12:50:21 +02:00
f6a4d57e06
gnu: foo2zjs: Update to 20180910.
...
* gnu/packages/cups.scm (foo2zjs): Update to 20180910.
2018-09-17 12:50:21 +02:00
a09a21190f
gnu: libiptcdata: Mark up description.
...
* gnu/packages/image.scm (libiptcdata)[description]: Use @dfn{}.
2018-09-17 12:50:20 +02:00
99d386a71f
gnu: powwow: Update to 1.2.18.
...
* gnu/packages/games.scm (powwow): Update to 1.2.18.
2018-09-17 12:50:20 +02:00
36aff81aa3
gnu: powwow: Use HTTPS home page.
...
* gnu/packages/games.scm (powwow)[home-page]: Use HTTPS.
2018-09-17 12:50:20 +02:00
956bcc8ed2
gnu: python-dirsync: Update to 2.2.3.
...
* gnu/packages/python.scm (python-dirsync): Update to 2.2.3.
[native-inputs]: Remove unzip.
2018-09-17 12:50:20 +02:00
4fed15fba3
gnu: mbedtls-apache: Update to 2.7.6.
...
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.6.
2018-09-17 01:14:15 -04:00
ad99df3990
gnu: linux-libre: Update to 4.18.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.8.
(%linux-libre-hash): Update hash.
2018-09-16 19:13:42 -04:00
c333c8b6f1
gnu: linux-libre@4.14: Update to 4.14.70.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.70.
(%linux-libre-4.14-hash): Update hash.
2018-09-16 19:12:53 -04:00
bf9d141a65
gnu: linux-libre@4.9: Update to 4.9.127.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.127.
2018-09-16 19:12:10 -04:00
b55d75f133
gnu: linux-libre@4.4: Update to 4.4.156.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.156.
2018-09-16 19:11:33 -04:00
31fdfc0cdd
gnu: dmidecode: Update to 3.2.
...
* gnu/packages/admin.scm (dmidecode): Update to 3.2.
2018-09-16 23:44:46 +02:00
5edef88b88
gnu: Add ruby-multi-test.
...
* gnu/packages/ruby.scm (ruby-multi-test): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
1b6f5475a1
gnu: Enable tests for ruby-multi-json.
...
* gnu/packages/ruby.scm (ruby-multi-json)[version]: Update to 1.13.1.
[source]: Switch to GitHub, so that the tests can be run.
[arguments]: Enable running the tests, and add a patch to fix an issue running
the tests.
[native-inputs]: Add native-inputs required for running the tests.
[home-page]: Use HTTPS.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
ed4b6b1840
gnu: Add ruby-oj.
...
* gnu/packages/ruby.scm (ruby-oj): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
2db0f9c82d
gnu: Add ruby-yajl-ruby.
...
* gnu/packages/ruby.scm (ruby-yajl-ruby): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-09-16 18:29:45 +01:00
cbb1b16865
admin: python-pyudev: Add dependency on python-six.
...
* gnu/packages/admin.scm (python-pyudev): Add dependency on python-six.
2018-09-15 21:26:50 +02:00
636579210f
gnu: php: Update to 7.2.10.
...
* gnu/packages/php.scm (php): Update to 7.2.10.
2018-09-15 21:06:08 +02:00
e8079dd9e4
gnu: wine-staging: Update to 3.16.
...
* gnu/packages/wine.scm (wine-staging): Update to 3.16.
2018-09-15 15:09:01 +02:00
b947c614df
gnu: wine-staging-patchset-data: Update to 3.16.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.16.
2018-09-15 15:09:01 +02:00
85a349787b
gnu: wine: Update to 3.0.3.
...
* gnu/packages/wine.scm (wine): Update to 3.0.3.
2018-09-15 15:09:00 +02:00
4be83af427
gnu: gambit-c: Update to 4.9.0.
...
The tests makefile still contains the offending lines, but I was unable
to reproduce the failure across 3 different machines.
* gnu/packages/scheme.scm (gambit-c): Update to 4.9.0.
[arguments]: Remove 'fix-tests' phase.
2018-09-15 12:15:28 +02:00
4e9832dd38
gnu: gambit-c: Update home page.
...
* gnu/packages/scheme.scm (gambit-c)[home-page]: Update.
2018-09-15 12:15:05 +02:00
511f3be695
gnu: Add python-user-agents.
...
* gnu/packages/python.scm (python-user-agents, python2-user-agents): New
variables.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 12:19:06 +08:00
2ee67781ff
gnu: Add python-ua-parser.
...
* gnu/packages/python.scm (python-ua-parser, python2-ua-parser): New variables.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 12:19:06 +08:00
935d5ceb9b
gnu: Add python-pycountry.
...
* gnu/packages/python.scm (python-pycountry, python2-pycountry): New variables.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 12:19:06 +08:00
021b42f5e7
gnu: zsh: Update to 5.6.2.
...
* gnu/packages/shells.scm (zsh): Update to 5.6.2.
2018-09-15 05:17:51 +02:00
81fb037f5a
gnu: libetpan: Use HTTPS home page.
...
* gnu/packages/mail.scm (libetpan)[home-page]: Use HTTPS.
2018-09-15 05:17:50 +02:00
483be9bda6
gnu: ocaml-ounit: Update to 2.0.8.
...
* gnu/packages/ocaml.scm (ocaml-ounit): Update to 2.0.8.
2018-09-15 05:17:50 +02:00
3319817174
gnu: pybind11: Update to 2.2.4.
...
* gnu/packages/python.scm (pybind11): Update to 2.2.4.
2018-09-15 05:17:50 +02:00
5c34d97187
gnu: pybind11: Don't use unstable tarball.
...
* gnu/packages/python.scm (pybind11)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-15 05:17:50 +02:00
61853b7447
gnu: libjpeg: Improve description.
...
* gnu/packages/image.scm (libjpeg)[description]: Add the list of the programs
it provides.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-15 10:49:50 +08:00
25bc6370a4
gnu: snakemake: Update to 5.2.4.
...
* gnu/packages/python.scm (snakemake): Update to 5.2.4.
[propagated-inputs]: Add python-gitpython.
2018-09-15 03:38:31 +02:00
bbe2a94799
gnu: libsigrokdecode: Update to 0.5.2.
...
* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.2.
2018-09-15 03:38:31 +02:00
9f1b186afc
gnu: libetpan: Update to 1.9.1.
...
* gnu/packages/mail.scm (libetpan): Update to 1.9.1.
2018-09-15 03:38:31 +02:00
aae96f8fac
gnu: libetpan: Don't use unstable tarball.
...
* gnu/packages/mail.scm (libetpan)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-15 03:38:31 +02:00
f9fe94c1f6
gnu: emacs-magit-popup: Don't use unstable tarball.
...
* gnu/packages/emacs.scm (emacs-magit-popup)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-15 03:38:30 +02:00
e1bf455cee
gnu: emacs-magit-popup: Update to 2.12.4.
...
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.4.
2018-09-15 03:38:30 +02:00
49c941b43b
gnu: libmwaw: Update to 0.3.14.
...
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.14.
2018-09-15 03:38:30 +02:00
002d73a01f
gnu: libwps: Update to 0.4.10.
...
* gnu/packages/libreoffice.scm (libwps): Update to 0.4.10.
2018-09-15 03:38:30 +02:00
c924fe38dc
gnu: umoci: Update to 0.4.2.
...
* gnu/packages/virtualization.scm (umoci): Update to 0.4.2.
2018-09-15 03:36:36 +02:00
56f3b85bd3
gnu: python-iso8601: Update to 0.1.12.
...
* gnu/packages/time.scm (python-iso8601): Update to 0.1.12.
2018-09-15 03:36:36 +02:00
ed017a78be
gnu: coq: Update to 8.8.1.
...
* gnu/packages/ocaml.scm (coq): Update to 8.8.1.
2018-09-15 03:36:36 +02:00
1d7cc6841e
gnu: coq: INVOKE.
...
* gnu/packages/ocaml.scm (coq)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-09-15 03:36:35 +02:00
9e9e5d5a26
gnu: OpenSSL 1.1: Update to 1.1.1.
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1.
[arguments]: Patch a `/usr/bin/env` invocation in the 'config' script.
Adjust the documentation output.
* gnu/packages/patches/openssl-1.1.0-c-rehash-in.patch: Rename and ...
* gnu/packages/patches/openssl-1.1-c-rehash-in.patch: ... adjust patch.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-09-14 16:51:49 -04:00
e830c9d0b0
gnu: Rename "banana-pi" to "bananapi".
...
* gnu/bootloader/u-boot.scm (u-boot-banana-pi-m2-ultra-bootloader): Rename
to...
(u-boot-bananapi-m2-ultra-bootloader): ...this.
* gnu/packages/bootloaders.scm (u-boot-banana-pi-m2-ultra): Rename to...
(u-boot-bananapi-m2-ultra): ...this.
* gnu/system/install.scm (banana-pi-m2-ultra-installation-os): Rename to...
(bananapi-m2-ultra-installation-os): ...this.
2018-09-14 21:31:24 +02:00
7a20877a18
gnu: python-llvmlite: Remove obsolete patch.
...
* gnu/packages/llvm.scm (python-llvmlite)[inputs]: Remove patch that is
obsolete since the upgrade to LLVM 6.0.1.
2018-09-14 15:12:03 +02:00
daa6036fda
gnu: Add openblas-ilp64.
...
* gnu/packages/maths.scm (openblas-ilp64): New variable.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-14 11:23:07 +02:00
1dd153b3aa
gnu: Add python-hic2cool.
...
* gnu/packages/bioinformatics.scm (python-hic2cool): New variable.
2018-09-14 09:15:49 +02:00
03c95f0414
gnu: Add r-abps.
...
* gnu/packages/cran.scm (r-abps): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-14 07:46:19 +02:00
016cabf7be
gnu: Add r-abodoutlier.
...
* gnu/packages/cran.scm (r-abodoutlier): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-14 07:46:19 +02:00
317b139c5d
gnu: rust: Update to 1.27.2.
...
* gnu/packages/rust.scm (rust): Update to 1.27.2.
2018-09-13 22:37:55 +02:00
b6afe7b7f5
gnu: Add r-abnormality.
...
* gnu/packages/cran.scm (r-abnormality): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 22:16:01 +02:00
f0314f65df
gnu: Add perl-devel-checklib.
...
* gnu/packages/perl.scm (perl-devel-checklib): New public variable.
2018-09-13 19:53:08 +02:00
7ec4f648e5
gnu: sg3_utils: Mark up description.
...
* gnu/packages/scsi.scm (sg3_utils)[description]: Use @dfn{}.
Wrap commands in @command{} rather than @code{}, and @itemize them.
2018-09-13 19:53:08 +02:00
581b6f5e96
gnu: sudo: Update to 1.8.25p1.
...
* gnu/packages/admin.scm (sudo): Update to 1.8.25p1.
2018-09-13 19:53:07 +02:00
0b0b43ed7a
gnu: youtube-viewer: Update to 3.4.1.
...
* gnu/packages/video.scm (youtube-viewer): Update to 3.4.1.
2018-09-13 19:53:07 +02:00
6be445785a
gnu: youtube-viewer: Don't use unstable tarball.
...
* gnu/packages/video.scm (youtube-viewer)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-09-13 19:53:07 +02:00
7d1cc61293
Revert "gnu: libinput: Update to 1.12.0."
...
Libinput-minimal has a lot of dependent packages, and this isn't reported by
`guix refresh --list-dependent`. We'll save this commit for another time.
This reverts commit 38dc3d6f17
2018-09-13 13:28:10 -04:00
ebb3cdb1ea
gnu: Add r-abjutils.
...
* gnu/packages/cran.scm (r-abjutils): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 19:18:47 +02:00
1efcd0f1ea
gnu: Add r-abhgenotyper.
...
* gnu/packages/cran.scm (r-abhgenotyper): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 19:13:43 +02:00
ae72b8f55b
gnu: Add ClusterShell.
...
* gnu/packages/ssh.scm (clustershell): New variable.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-13 19:12:25 +02:00
38dc3d6f17
gnu: libinput: Update to 1.12.0.
...
* gnu/packages/freedesktop.scm (libinput): Update to 1.12.0.
2018-09-13 13:08:24 -04:00
ef26400b66
gnu: Add r-abf2.
...
gnu/packages/cran.scm (r-abf2): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 19:05:35 +02:00
f21967a44b
gnu: retroarch: Fix building on armhf-linux.
...
* gnu/packages/emulators.scm (retroarch)[arguments]: Add custom flags
when building for armhf-linux.
2018-09-13 18:40:32 +03:00
fade67ab75
gnu: retroarch: Use shared zlib.
...
* gnu/packages/emulators.scm (retroarch)[arguments]: In custom
'configure phase, use our zlib instead of vendor's zlib.
2018-09-13 18:40:30 +03:00
060366f6b3
gnu: rust@1.23.0: Inherit outputs.
...
* gnu/packages/rust.scm (rust-1.23)[outputs]: Inherit.
2018-09-13 17:19:04 +02:00
b78fe27b31
gnu: rust@1.25.0: Disable pedantic test.
...
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>
[disable-nil-enum-test]: New phase.
2018-09-13 17:17:15 +02:00
6fe73b487b
gnu: rust: Accept more detailed gdb responses.
...
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust-1.25): Use it.
(rust-1.26): Use it.
(rust): Use it.
2018-09-13 17:17:15 +02:00
3cadd3ce93
gnu: Add r-abe.
...
gnu/packages/cran.scm (r-abe): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 15:21:40 +02:00
d1ca3d7297
gnu: Add r-svdialogs.
...
gnu/packages/cran.scm (r-svdialogs): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-13 15:07:45 +02:00
26700caed9
gnu: racket: Fix incompatibility with libedit.
...
The former patching made racket detecting libedit as the old 2.11 version,
which leads to failure:
<https://lists.gnu.org/archive/html/help-guix/2018-09/msg00027.html >.
* gnu/packages/scheme.scm (racket)[arguments]: Patch the 'ffi-lib' call of
libedit using 'PLT_READLINE_LIB'.
2018-09-13 20:20:41 +08:00
73dc7834de
gnu: rust@1.20.0: Replace "default-ar" by "ar".
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* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Replace
"default-ar" by "ar".
2018-09-13 10:10:49 +02:00
1ab3e1dd98
gnu: Add rust@1.22.1.
...
* gnu/packages/rust.scm (rust-1.22): New variable.
2018-09-13 10:10:49 +02:00
05ebff92bd
gnu: Add rust@1.21.0.
...
* gnu/packages/rust.scm (rust-1.21): New variable.
2018-09-13 10:10:49 +02:00
e69b1a7c6e
gnu: rust-bootstrap: Clean up comments.
...
* gnu/packages/rust.scm (rust-bootstrap): Clean up comments.
2018-09-13 10:10:49 +02:00
bfdc0e4d45
gnu: rust: Move "cc" from rust-bootstrap to rust proper.
...
* gnu/packages/rust.scm (rust-bootstrap)[arguments]<#:phases>[install]:
Delete "cc".
(rust-1.23)[arguments]<#:phases>: Delete "provide-cc" deletion.
2018-09-13 10:10:49 +02:00
333c0ca966
gnu: rust@1.23.0: Use rust@1.20.0 as template.
...
* gnu/packages/rust.scm (rust-1.23)[inherit]: Use rust-1.20.
[arguments]<#:phases>: Delete "patch-cargo-tomls" phase deletion.
Add "provide-cc" phase deletion.
Add "configure-archiver" phase deletion.
[configure]: Inherit phase.
[reset-timestamps-after-changes]: Inherit phase.
[build]: Inherit phase.
[check]: Inherit phase.
[install]: Inherit phase.
[wrap-rustc]: Inherit phase.
2018-09-13 10:10:48 +02:00
f309671c28
gnu: Add emacs-org-reveal.
...
* gnu/packages/emacs.scm (emacs-org-reveal): New variable.
2018-09-12 22:48:04 -04:00
82baeea297
gnu: Add emacs-elpy.
...
* gnu/packages/emacs.scm (emacs-elpy): New variable.
2018-09-12 22:16:25 -04:00
dcc31d7f41
gnu: Add emacs-highlight-indentation.
...
* gnu/packages/emacs.scm (emacs-highlight-indentation): New variable.
2018-09-12 22:16:25 -04:00
87e9fb5753
gnu: Add emacs-pyvenv.
...
* gnu/packages/emacs.scm (emacs-pyvenv): New variable.
2018-09-12 22:16:24 -04:00
2c6ff3a2bc
gnu: Add emacs-find-file-in-project.
...
* gnu/packages/emacs.scm (emacs-find-file-in-project): New variable.
2018-09-12 22:16:24 -04:00
563f151bd4
gnu: Add emacs-mocker.
...
* gnu/packages/emacs.scm (emacs-mocker): New variable.
2018-09-12 22:16:24 -04:00
aaf10fa7d8
gnu: Add emacs-el-x.
...
* gnu/packages/emacs.scm (emacs-el-x): New variable.
2018-09-12 22:16:23 -04:00
8795ce8673
gnu: Add python-black.
...
* gnu/packages/python.scm (python-black): New variable.
2018-09-12 22:16:23 -04:00
7e846d07e8
gnu: Add python-toml.
...
* gnu/packages/python.scm (python-toml): New variables.
2018-09-12 22:16:23 -04:00
4bd8f4f302
gnu: python-jedi: Update to 0.12.1.
...
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[propagated-inputs]: Move python-parso here, as it is required at run time.
2018-09-12 22:16:18 -04:00
614cfd5c54
gnu: Add rust@1.20.0.
...
* gnu/packages/rust.scm (rust-1.20): New variable.
2018-09-13 00:25:01 +02:00
3763e7716c
gnu: rust@1.19.0: Remove superfluous install-file call.
...
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Remove
superfluous install-file call.
2018-09-12 23:17:42 +02:00
5a3fcf5b44
gnu: rust@1.19.0: Install rustdoc.
...
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[install]: Install
rustdoc.
2018-09-12 23:17:42 +02:00
0bcd1bc778
gnu: rust@1.19.0: Use match-lambda directly.
...
Follow-up to 3159ef7c99
2018-09-12 23:17:42 +02:00
f006237c54
gnu: gnurl: Update to 7.61.1.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.61.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-12 16:02:39 -04:00
ff9008d8de
gnu: Zsh: Remove workaround required for Zsh 5.6.
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This is a followup to commit 5a5d3e3563
2018-09-12 15:21:42 -04:00
4fa7f29f2a
gnu: emacs-hl-todo: Update to 1.9.0.
...
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.9.0.
2018-09-12 19:51:26 +02:00
4a89bdd196
gnu: python-scikit-learn: Update to 0.19.2.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.2.
[source]: Fetch from git.
[arguments]: Run tests before installation; replace "check" phase, add
"build-ext" phase; delete "reset-gzip-timestamps" phase.
[native-inputs]: Add python-pytest and python-pandas; remove python-nose.
2018-09-12 19:35:02 +02:00
b002809f84
gnu: Add emacs-blimp.
...
* gnu/packages/emacs.scm (emacs-blimp): New variable.
2018-09-12 19:34:17 +02:00
320105eadb
gnu: Add emacs-org-web-tools.
...
* gnu/packages/emacs.scm (emacs-org-web-tools): New variable.
2018-09-12 19:34:17 +02:00
9c208f38f2
gnu: Add emacs-youtube-dl.
...
* gnu/packages/emacs.scm (emacs-youtube-dl): New variable.
2018-09-12 19:34:14 +02:00
acd4da3f29
gnu: libfilezilla: Update to 0.13.1.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.1.
2018-09-12 16:44:08 +02:00
bec13d872d
gnu: sg3-utils: Update to 1.43.
...
* gnu/packages/scsi.scm (sg3-utils): Update to 1.43.
[license]: Add bsd-2.
2018-09-12 16:44:08 +02:00
0f304ba73e
gnu: syslinux: Use HTTPS home page.
...
* gnu/packages/bootloaders.scm (syslinux)[home-page]: Use HTTPS.
2018-09-12 16:09:38 +02:00
60d8db74c6
gnu: syslinux: Use INVOKE.
...
* gnu/packages/bootloaders.scm (syslinux)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-09-12 16:09:38 +02:00
5a5d3e3563
gnu: zsh: Update to 5.6.1.
...
* gnu/packages/shells.scm (zsh): Update to 5.6.1.
2018-09-12 16:09:38 +02:00
4dbef67102
gnu: zsh: Use HTTPS.
...
* gnu/packages/shells.scm (zsh)[source, home-page]: Use HTTPS.
2018-09-12 16:09:37 +02:00
c8749b0250
gnu: Add perl-mock-config.
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* gnu/packages/perl-check.scm (perl-mock-config): New public variable.
2018-09-12 16:09:37 +02:00
b2c8d31ff6
gnu: perl-moosex-getopt: Update to 0.73.
...
* gnu/packages/perl.scm (perl-moosex-getopt): Update to 0.73.
[native-inputs]: Add perl-module-build-tiny, perl-path-tiny,
perl-test-needs.
2018-09-12 10:28:47 +03:00
50b3b83143
netsurf: Register patch.
...
Follow-up to f9e140a243
2018-09-11 20:29:04 -05:00
bbe46a4af5
mpi: Factorize openmpi setup build phase.
...
* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-09-11 20:29:04 -05:00
5882078e8c
font-fantasque-sans: Upgrade to 1.7.2.
...
* gnu/packages/fonts.scm (font-fantasque-sans): Upgrade to 1.7.2.
[native-inputs]: Add zip.
[arguments]: Add 'xrange->range phase for python3 compatibility. Adjust
install phase to work with newly generated font variants.
2018-09-11 20:29:03 -05:00
2b0820bf0d
gnu: emacs-helm: Update to 3.0.
...
* gnu/packages/emacs.scm (emacs-helm): Update to 3.0.
2018-09-11 23:53:35 +02:00
ee0d184502
gnu: Add emacs-hackernews.
...
* gnu/packages/emacs.scm (emacs-hackernews): New variable.
2018-09-11 23:53:35 +02:00
bd8f74dfbe
gnu: emacs-evil-collection: Update to 20180911.
...
* gnu/packages/emacs.scm (emacs-evil-collection): Update to 20180911.
2018-09-11 23:53:35 +02:00
ac9e307740
gnu: emacs-magit-todos: Update to 1.1.
...
* gnu/packages/emacs.scm (emacs-magit-todos): Update to 1.1.
2018-09-11 23:53:35 +02:00
475e16578f
gnu: emacs-helm-system-packages: Update to 1.10.1.
...
* gnu/packages/emacs.scm (emacs-helm-system-packages): Update to 1.10.1.
2018-09-11 23:53:35 +02:00
4a67079f71
gnu: mes: Oops, use mirror://gnu download url.
...
* gnu/packages/mes.scm (mes): Oops, use mirror://gnu download url.
2018-09-11 22:34:02 +02:00
a855117c59
gnu: snakemake: Update home page.
...
* gnu/packages/python.scm (snakemake)[home-page]: Update.
2018-09-11 21:12:43 +02:00
9b83c15afe
gnu: snakemake: Update to 5.2.2.
...
* gnu/packages/python.scm (snakemake): Update to 5.2.2.
2018-09-11 21:03:08 +02:00
a93de1ae9e
gnu: obnam: Add deprecation warning.
...
* gnu/packages/backup.scm (obnam)[synopsis, description]: Note its
retirement.
2018-09-11 21:03:07 +02:00
cd1e138cc6
gnu: unbound: Update to 1.8.0.
...
* gnu/packages/dns.scm (unbound): Update to 1.8.0.
2018-09-11 21:03:07 +02:00
702a87f2d1
gnu: perl-dbd-mysql: Update to 4.047.
...
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047.
[arguments]: Add 'skip-library-detection' phase.
2018-09-11 21:03:07 +02:00
52b0a352c3
gnu: libreoffice: Update to 6.1.0.3.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.0.3.
[source]: Correct indenting.
[inputs]: Add libnumbertext and python-lxml.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:30 +02:00
aeba7d4650
gnu: Add libnumbertext.
...
* gnu/packages/libreoffice.scm (libnumbertext): New public variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:30 +02:00
aa82260bc0
gnu: arpack-ng-openmpi: Fix build.
...
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add
'set-test-environment phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:29 +02:00
d2fe71b04d
gnu: Add emacs-irony-mode.
...
* gnu/packages/emacs.scm (emacs-irony-mode): New variable.
(emacs-irony-mode-server): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 17:46:28 +02:00
8539eb5c46
gnu: jupyter-guile-kernel: Add dependencies to the search path.
...
This allows:
guix environment --ad-hoc jupyter jupyter-guile-kernel \
-- jupyter notebook
to work out-of-the-box.
* gnu/packages/guile.scm (jupyter-guile-kernel)[arguments]: In
'install-kernel' phase, add '-L' and '-C' flags to 'kernel.json'.
[propagated-inputs]: Remove.
[inputs]: Add GUILE-JSON and GUILE-SIMPLE-ZMQ.
2018-09-11 17:46:28 +02:00
828fa94d7a
gnu: guile-simple-zmq, jupyter-guile-kernel: Update to 5bb66a0 and a7db924.
...
* gnu/packages/guile.scm (guile-simple-zmq): Update to 5bb66a0.
(jupyter-guile-kernel): Update to a7db924.
2018-09-11 17:46:28 +02:00
01af264dcb
gnu: Add r-svgui.
...
* gnu/packages/cran.scm (r-svgui): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-11 17:27:10 +02:00
f6b7ccc9f9
gnu: spice: Update to 0.14.1 [fixes CVE-2018-10873].
...
* gnu/packages/spice.scm (spice): Update to 0.14.1.
[source](uri): Update to new "spice-server" subdirectory.
[native-inputs]: Add GLIB-NETWORKING and GSETTINGS-DESKTOP-SCHEMAS.
[arguments]: Remove configure-flag which is now off even when celt is
available. Add phase to set $SSL_CERT_FILE.
2018-09-11 14:12:53 +02:00
41a659d2ec
gnu: usbredir: Update to 0.8.0.
...
* gnu/packages/spice.scm (usbredir): Update to 0.8.0.
[source]: Use URL-FETCH.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
[arguments]: Remove.
2018-09-11 14:12:53 +02:00
b4ff75b507
gnu: syncthing: Update to 0.14.50.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.50.
2018-09-11 03:24:46 -04:00
e76709f71f
gnu: go-github-com-syncthing-notify: Update to 0.0.0-2.b76b458.
...
* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to
0.0.0-2.b76b458.
2018-09-11 03:24:42 -04:00
091ef8c97e
gnu: VLC: Update to 3.0.4.
...
* gnu/packages/video.scm (vlc): Update to 3.0.4.
2018-09-10 19:24:51 -04:00
5d9c28f117
gnu: git: Update to 2.19.0.
...
* gnu/packages/version-control.scm (git): Update to 2.19.0.
(cgit)[inputs]: Use the source of Git 2.18.0.
2018-09-10 19:02:45 -04:00
cbb0edd1be
gnu: Add r-abd.
...
* gnu/packages/cran.scm (r-abd): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 00:14:58 +02:00
6c6ce2d088
gnu: Add r-mosaic.
...
* gnu/packages/cran.scm (r-mosaic): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 00:14:58 +02:00
2f195b6f23
gnu: Add r-mosaicdata.
...
* gnu/packages/cran.scm (r-mosaicdata): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-11 00:14:58 +02:00
d54145c38a
gnu: guitarix: Update to 0.37.3.
...
* gnu/packages/audio.scm (guitarix): Update to 0.37.3.
[inputs]: Add curl.
2018-09-10 23:58:14 +02:00
029de52fe9
gnu: guitarix-lv2: Use correct configure flag.
...
* gnu/packages/audio.scm (guitarix-lv2)[arguments]: Change configure flag.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-10 23:58:14 +02:00
2740549754
gnu: kakoune: Use HTTPS home page.
...
* gnu/packages/text-editors.scm (kakoune)[home-page]: Use HTTPS.
2018-09-10 22:54:36 +02:00
b38827096f
gnu: mcrl2: Use HTTPS home page.
...
* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
2018-09-10 22:54:36 +02:00
4105f13bb5
gnu: tor: Update to 0.3.4.8.
...
* gnu/packages/tor.scm (tor): Update to 0.3.4.8.
2018-09-10 22:54:35 +02:00
695775b138
gnu: kakoune: Update to 2018.09.04.
...
* gnu/packages/text-editors.scm (kakoune): Update to 2018.09.04.
2018-09-10 22:15:20 +02:00
4b41568fa5
gnu: python-binaryornot: Update to 0.4.4.
...
* gnu/packages/python.scm (python-binaryornot): Update to 0.4.4.
2018-09-10 22:15:20 +02:00
86788cb0c9
gnu: python-parse: Update to 1.8.4.
...
* gnu/packages/python.scm (python-parse): Update to 1.8.4.
2018-09-10 22:15:20 +02:00
c0ea7f5ff4
gnu: python-parse: Mark up description.
...
* gnu/packages/python.scm (python-parse)[description]: Use @code{}.
2018-09-10 22:15:20 +02:00
cc12ac58a2
gnu: python-jedi: Update to 0.12.1.
...
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[synopsis, description]: Adjust to expanded functionality.
2018-09-10 22:15:19 +02:00
7a6eaf5ca9
gnu: python-parso: Update to 0.3.1.
...
* gnu/packages/python.scm (python-parso): Update to 0.3.1.
2018-09-10 22:15:19 +02:00
d56eee862b
gnu: qtractor: Update to 0.9.2.
...
* gnu/packages/music.scm (qtractor): Update to 0.9.2.
[arguments]: Remove obsolete Qt 5.11 workaround.
2018-09-10 22:15:19 +02:00
875d068176
Adjust all users of (gnu packages ldc) to use (gnu packages dlang).
...
This is a followup to commit 98d6543f86
2018-09-10 15:44:32 -04:00
c5e4b4cc8f
gnu: Add libabigail.
...
* gnu/packages/elf.scm (libabigail): New public variable.
2018-09-10 20:27:42 +02:00
fc449407fe
gnu: python-debian: Update home page.
...
* gnu/packages/python.scm (python-debian)[home-page]: Set to source
repository.
2018-09-10 20:27:42 +02:00
418ec0adc9
gnu: python-libarchive-c: Update to 2.8.
...
* gnu/packages/python.scm (python-libarchive-c): Update to 2.8.
[arguments]: Replace 'check' phase.
[native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST.
2018-09-10 20:27:42 +02:00
ba0052e8ae
gnu: python-tlsh: Update to 3.4.5.
...
* gnu/packages/python.scm (python-tlsh): Update to 3.4.5.
2018-09-10 20:27:42 +02:00
8fe059bf6c
gnu: python-cryptography: Update to 2.3.1.
...
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.3.1.
2018-09-10 20:27:42 +02:00
2424d5e56c
gnu: cloc: Update source hash.
...
The upstream tarball was modified in place. The only changes are:
--- /gnu/store/5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar.gz
+++ /gnu/store/pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar.gz
├── filetype from file(1)
│ @@ -1 +1 @@
│ -gzip compressed data, last modified: Fri Sep 7 18:22:49 2018, from Unix
│ +gzip compressed data, last modified: Sat Sep 8 14:09:43 2018, from Unix
│ --- 5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar
├── +++ pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar
│ ├── file list
│ │ @@ -1,13 +1,13 @@
│ │ -rwxrwxr-x 0 al (1000) al (1000) 545021 2018-09-07 18:21:22 cloc-1.78/cloc
│ │ -rwxrwxr-x 0 al (1000) al (1000) 1818 2018-09-07 18:21:22 cloc-1.78/sqlite_formatter
│ │ -drwxrwxr-x 0 al (1000) al (1000) 0 2018-09-07 18:21:22 cloc-1.78/Unix/
│ │ --rwxrwxr-x 0 al (1000) al (1000) 498571 2018-09-07 18:21:22 cloc-1.78/Unix/cloc
│ │ +drwxrwxr-x 0 al (1000) al (1000) 0 2018-09-08 14:09:23 cloc-1.78/Unix/
│ │ +-rwxrwxr-x 0 al (1000) al (1000) 498537 2018-09-08 14:09:22 cloc-1.78/Unix/cloc
│ │ -rwxrwxr-x 0 al (1000) al (1000) 32382 2018-09-07 18:21:22 cloc-1.78/Unix/t/00_C.t
│ │ -rwxrwxr-x 0 al (1000) al (1000) 12614 2018-09-07 18:21:22 cloc-1.78/Unix/t/01_opts.t
│ │ -rw-rw-r-- 0 al (1000) al (1000) 862 2018-09-07 18:21:22 cloc-1.78/Unix/README
│ ├── cloc-1.78/Unix/cloc
│ │ @@ -1,8 +1,7 @@
│ │ -#!/usr/local/perl/5.28.0/bin/perl
│ │ #!/usr/bin/env perl
* gnu/packages/code.scm (cloc)[source]: Update sha256 hash.
2018-09-10 20:20:00 +02:00
254844f22d
gnu: nano: Update to 3.0.
...
* gnu/packages/nano.scm (nano): Update to 3.0.
2018-09-10 13:54:29 -04:00
eb07a6f898
gnu: linux-libre: Update to 4.18.7.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.7.
(%linux-libre-hash): Update hash.
2018-09-10 13:25:54 -04:00
c727ed05ac
gnu: linux-libre@4.14: Update to 4.14.69.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.69.
(%linux-libre-4.14-hash): Update hash.
2018-09-10 13:24:01 -04:00
176999f18e
gnu: linux-libre@4.9: Update to 4.9.126.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.126.
2018-09-10 13:23:20 -04:00
d7e9bd15fa
gnu: linux-libre@4.4: Update to 4.4.155.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.155.
2018-09-10 13:22:35 -04:00
98184e566c
gnu: gnome-mpv: Update to 0.15.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.15.
2018-09-10 18:22:00 +02:00
37a2ea118d
gnu: fortify-headers: Update to 1.0.
...
* gnu/packages/suckless.scm (fortify-headers): Update to 1.0.
2018-09-10 18:22:00 +02:00
7c8b1bf664
gnu: python-genshi: Update to 0.7.1.
...
* gnu/packages/python-web.scm (python-genshi): Update to 0.7.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches.
* gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch,
gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch,
gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch,
gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch,
gnu/packages/patches/python-genshi-isstring-helper.patch,
gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-09-10 18:21:59 +02:00
83397e0786
gnu: python-sockjs-tornado: Update to 1.0.5.
...
* gnu/packages/python-web.scm (python-sockjs-tornado): Update to 1.0.5.
2018-09-10 18:21:59 +02:00
1f7fe26f83
gnu: python-sockjs-tornado: Edit synopsis & description.
...
* gnu/packages/python-web.scm (python-sockjs-tornado)[synopsis]
[description]: Pick nits.
2018-09-10 18:21:59 +02:00
98d6543f86
gnu: Rename ldc.scm to dlang.scm.
...
* gnu/packages/ldc.scm: Rename to...
* gnu/packages/dlang.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2018-09-10 17:47:52 +02:00
633e8aab69
gnu: ldc: Update to 1.10.0.
...
* gnu/packages/ldc.scm (ldc): Update to 1.10.0.
[native-inputs]: Switch to LLVM and CLANG.
(ldc-bootstrap)[synopsis, description]: Tweak.
* gnu/packages/patches/ldc-disable-phobos-tests.patch: New file.
* gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-10 17:47:52 +02:00
f80d6ea251
gnu: Add hstr.
...
* gnu/packages/shellutils.scm (hstr): New variable.
2018-09-10 17:47:52 +02:00
8a8662d286
gnu: emacs-guix: Update to 0.5.
...
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.
[propagated-inputs]: Add 'guile-gcrypt'.
[arguments]: Adjust #:configure-flags accordingly.
2018-09-10 18:38:32 +03:00
fdf68c232d
gnu: emacs-build-farm: Update to 0.2.1.
...
* gnu/packages/emacs.scm (emacs-build-farm): Update to 0.2.1.
Change source from gitlab to notabug.
2018-09-10 18:38:32 +03:00
5d78cf0b6c
gnu: emacs-bui: Update to 1.2.0.
...
* gnu/packages/emacs.scm (emacs-bui): Update to 1.2.0.
Change source from github to notabug.
2018-09-10 18:38:32 +03:00
5bfa7510d1
gnu: Add python-pygenometracks.
...
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
2018-09-10 16:50:26 +02:00
1189c7f1b0
gnu: Add python-hicexplorer.
...
* gnu/packages/bioinformatics.scm (python-hicexplorer): New variable.
2018-09-10 16:50:26 +02:00
5bb9e0af8d
gnu: Add python-cooler.
...
* gnu/packages/bioinformatics.scm (python-cooler): New variable.
2018-09-10 16:50:26 +02:00
80f4db91b1
gnu: Add python-pyfaidx.
...
* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
2018-09-10 16:50:26 +02:00
1f41f01c14
gnu: Add python-pypairix.
...
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
2018-09-10 16:50:26 +02:00
a9d496b353
gnu: Add python-intervaltree.
...
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
2018-09-10 16:50:26 +02:00
a6a7156aa9
gnu: Add python-dask.
...
* gnu/packages/python.scm (python-dask): New variable.
2018-09-10 16:50:26 +02:00
035989c403
gnu: Add python-partd.
...
* gnu/packages/python.scm (python-partd): New variable.
2018-09-10 16:50:26 +02:00
c27a9d8a88
gnu: Add python-blosc.
...
* gnu/packages/python.scm (python-blosc): New variable.
2018-09-10 16:50:26 +02:00
b2b8226244
gnu: Add python-locket.
...
* gnu/packages/python.scm (python-locket): New variable.
2018-09-10 16:50:26 +02:00
930ba31d20
gnu: Add python-cloudpickle.
...
* gnu/packages/python.scm (python-cloudpickle): New variable.
2018-09-10 16:50:26 +02:00
3d352cb9cf
gnu: Add python-sortedcontainers.
...
* gnu/packages/python.scm (python-sortedcontainers): New variable.
2018-09-10 16:50:26 +02:00
098cb1e9c4
gnu: Add python-cytoolz.
...
* gnu/packages/python.scm (python-cytoolz): New variable.
2018-09-10 16:50:26 +02:00
7cd51cd28e
gnu: Add python-toolz.
...
* gnu/packages/python.scm (python-toolz): New variable.
2018-09-10 16:50:25 +02:00
943a4cb601
gnu: Add python-multiprocess.
...
* gnu/packages/python.scm (python-multiprocess): New variable.
2018-09-10 16:50:25 +02:00
fc62567251
gnu: Add python-dill.
...
* gnu/packages/python.scm (python-dill): New variable.
2018-09-10 16:50:25 +02:00
82d5c7c6de
gnu: python-typing: Update to 3.6.6.
...
* gnu/packages/python.scm (python-typing): Update to 3.6.6.
2018-09-10 15:29:13 +02:00
419aa05e1b
gnu: tinyproxy: Update to 1.10.0.
...
* gnu/packages/web.scm (tinyproxy): Update to 1.10.0.
[native-inputs]: Remove asciidoc.
2018-09-10 15:29:12 +02:00
f6c8a97a04
gnu: spectrwm: Update to 3.2.0.
...
* gnu/packages/wm.scm (spectrwm): Update to 3.2.0.
[arguments]: Remove 'fix-freetype-include' phase.
2018-09-10 15:29:12 +02:00
57d70dbabc
gnu: Add yad.
...
* gnu/packages/gtk.scm (yad): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-10 14:45:15 +02:00
94b3b6041d
gnu: hpcguix-web: Update to 53e09ea.
...
* gnu/packages/web.scm (hpcguix-web): Update to 53e09ea.
2018-09-10 12:18:14 +02:00
81317071fb
services: hpcguix-web: Produce a log file and rotate it.
...
* gnu/services/web.scm (%hpcguix-web-log-file)
(%hpcguix-web-log-rotations): New variables.
(hpcguix-web-shepherd-service): Pass #:log-file.
(hpcguix-web-service-type): Extend ROTTLOG-SERVICE-TYPE.
2018-09-10 12:12:52 +02:00
19de8273ee
services: tailon: Move to (gnu services web).
...
This allows (gnu services admin) to remain deeper in the module graph
and to be used by (gnu services web).
* gnu/services/admin.scm (<tailon-configuration-file>)
(tailon-configuration-files-string)
(tailon-configuration-file-compiler, <tailon-configuration>)
(tailon-shepherd-service, %tailon-accounts)
(tailon-service-type): Move to...
* gnu/services/web.scm: ... here.
* gnu/tests/admin.scm: Remove. Move test to...
* gnu/tests/web.scm (%tailon-os)
(run-tailon-test, %test-tailon): ... here.
2018-09-10 12:12:50 +02:00
d930374014
gnu: youtube-dl: Update to 2018.08.04.
...
* gnu/packages/video.scm (youtube-dl): Update to 2018.08.04.
2018-09-10 11:31:34 +02:00
de15ff1a6c
gnu: Add asignify.
...
* gnu/packages/crypto.scm (asignify): New variable.
2018-09-09 20:05:47 -04:00
d4bd2453ec
gnu: certbot: Update to 0.27.1.
...
* gnu/packages/tls.scm (python-acme): Update to 0.27.1.
[arguments]: Use invoke.
(certbot): Update to 0.27.1.
[native-inputs]: Use python-sphinx-1.6.
2018-09-09 18:52:04 -04:00
ced98c7e89
gnu: libgd: Fix CVE-2018-{5711,1000222}.
...
* gnu/packages/patches/gd-CVE-2018-1000222.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd/fixed): New variable.
* gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
2018-09-09 18:13:19 -04:00
45350539aa
gnu: r-chron: Update to 2.3-53.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-53.
2018-09-09 22:26:02 +02:00
ab50580a9d
gnu: r-annotationhub: Update to 2.12.1.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
2018-09-09 22:26:02 +02:00
35c076e619
gnu: r-chippeakanno: Update to 3.14.2.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
2018-09-09 22:26:02 +02:00
c36d972531
gnu: Update texmaker to 5.0.2.
...
* gnu/packages/tex.scm (texmaker): Update to 5.0.2.
2018-09-09 21:59:08 +02:00
0084744b3a
gnu: ghostscript: Update replacement to 9.24 [security fixes].
...
The following CVEs are fixed with this release: CVE-2018-15908,
CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509,
CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539,
CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543.
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file.
* gnu/packages/patches/ghostscript-CVE-2018-16509.patch,
gnu/packages/patches/ghostscript-bug-699708.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24.
[source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and
'ghostscript-runpath.patch'. Add 'ghostscript-CVE-2018-16509.patch' and
'ghostscript-bug-699708.patch'.
[arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output
directory.
2018-09-09 16:43:11 +02:00
910a20e2b8
gnu: jbig2dec: Replace with 0.15 [security fixes].
...
* gnu/packages/image.scm (jbig2dec-0.15): New public variable.
(jbig2dec)[replacement]: New field.
2018-09-09 16:43:11 +02:00
a617fd55df
gnu: OpenBLAS: Update source URI.
...
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable
SourceForge mirror.
2018-09-09 16:43:11 +02:00
1448fa2547
gnu: openal: Update to 1.19.0.
...
* gnu/packages/audio.scm (openal): Update to 1.19.0.
2018-09-09 16:43:11 +02:00
e9c1492f66
gnu: glm: Update to 0.9.9.1.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
2018-09-09 16:43:10 +02:00
91b3a6d4db
gnu: msmtp: Remove unneeded input.
...
* gnu/packages/mail.scm (msmtp)[inputs]: Remove LIBIDN, which is only required
when using OpenSSL (or GnuTLS sans IDN support).
2018-09-09 16:43:10 +02:00
37f9cfae43
gnu: msmtp: Update to 1.8.0.
...
* gnu/packages/mail.scm (msmtp): Update to 1.8.0.
2018-09-09 16:43:10 +02:00
249846bfde
gnu: libsoup: Update to 2.64.0.
...
* gnu/packages/gnome.scm (libsoup): Update to 2.64.0.
[inputs]: Add LIBPSL.
2018-09-09 16:43:10 +02:00
617cf5de92
gnu: mpfr: Update home page.
...
* gnu/packages/multiprecision.scm (mpfr)[home-page]: Use HTTPS.
2018-09-09 16:43:10 +02:00
81bf0fd0d4
gnu: julia: Update objconv input.
...
* gnu/packages/julia.scm (julia)[inputs]: Update the hash of "objconv", which
does not have a stable URL. Add a file name and use HTTPS while at it.
2018-09-09 16:43:10 +02:00
b64e67ad40
gnu: cloc: Update to 1.78.
...
* gnu/packages/code.scm (cloc): Update to 1.78.
[source]: Update URI.
2018-09-09 15:01:55 +02:00
c2311644a5
gnu: signify: Update to 24.
...
* gnu/packages/crypto.scm (signify): Update to 24.
2018-09-09 15:01:54 +02:00
bb105673b8
gnu: musl: Update to 1.1.20.
...
* gnu/packages/musl.scm (musl): Update to 1.1.20.
2018-09-09 15:01:54 +02:00
bb5e06a35e
gnu: perl-pegex: Update to 0.67.
...
* gnu/packages/perl.scm (perl-pegex): Update to 0.67.
2018-09-09 15:01:54 +02:00
9ad80992d0
gnu: perl-config-autoconf: Update to 0.317.
...
* gnu/packages/perl.scm (perl-config-autoconf): Update to 0.317.
2018-09-09 15:01:53 +02:00
15dbc911f6
gnu: perl-extutils-installpaths: Update to 0.012.
...
* gnu/packages/perl.scm (perl-extutils-installpaths): Update to 0.012.
2018-09-09 15:01:53 +02:00
4e77b75e11
gnu: perl-extutils-helpers: Update to 0.026.
...
* gnu/packages/perl.scm (perl-extutils-helpers): Update to 0.026.
2018-09-09 15:01:53 +02:00
748e6e1271
gnu: perl-getopt-long-descriptive: Update to 0.103.
...
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.103.
2018-09-09 15:01:53 +02:00
04fc0b9489
gnu: perl-namespace-clean: Update to 0.27.
...
* gnu/packages/perl.scm (perl-namespace-clean): Update to 0.27.
2018-09-09 15:01:52 +02:00
49e63e3884
gnu: perl-datetime: Update to 1.50.
...
* gnu/packages/perl.scm (perl-datetime): Update to 1.50.
2018-09-09 15:01:52 +02:00
2d32a6572d
gnu: perl-params-validate: Update to 1.29.
...
* gnu/packages/perl.scm (perl-params-validate): Update to 1.29.
2018-09-09 15:01:52 +02:00
a0fad0374e
gnu: links: Update to 2.17.
...
* gnu/packages/web-browsers.scm (links): Update to 2.17.
2018-09-09 15:01:52 +02:00
b9114ccbad
gnu: aircrack-ng: Update to 1.3.
...
* gnu/packages/networking.scm (aircrack-ng): Update to 1.3.
[native-inputs]: Add autoconf, automake, libtool, and which.
[inputs]: Add libpcap.
[arguments]: Use conventional --options in #:configure-flags.
Restore ‘configure’ phase. Add ‘patch-evalrev’ and customise ‘bootstrap’
phases. Simplify ‘absolutize-tools’ phase.
2018-09-09 14:50:34 +02:00
6930ea33c9
gnu: aircrack-ng: Use HTTPS.
...
* gnu/packages/networking.scm (aircrack-ng)[source, home-page]: Use HTTPS.
2018-09-09 14:50:34 +02:00
d7f99b3b76
gnu: perl: Improve description.
...
Fixes <https://bug.gnu.org/32650 >.
* gnu/packages/perl.scm (perl)[description]: Use description from 'perlintro'.
2018-09-09 19:11:52 +08:00
4ab6a2f23d
tests: base: Add Guile-Gcrypt & co. to the search path.
...
Fixes a regression introduced in
ca71942445
2018-09-08 23:02:01 +02:00
e80c725db7
services: nginx: 'stop' returns #f.
...
Previously we'd return #t, which the Shepherd would consider a failure
to stop the service.
* gnu/services/web.scm (nginx-shepherd-service): In 'nginx-action',
return #f when stopping the service.
2018-09-08 23:02:00 +02:00
985975ae80
services: nginx: Don't read PID file when passed a custom config file.
...
Fixes <https://bugs.gnu.org/32665 >.
* gnu/services/web.scm (nginx-shepherd-service): Check whether FILE is
true and don't read the PID file if it is; use 'read-pid-file' instead
of a potentially endless loop.
2018-09-08 23:02:00 +02:00
c665774a1c
gnu: mes: Update to 0.17.1.
...
* gnu/packages/patches/mes-nyacc-0.86.0.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (mes): Update to 0.17.1, depend on latest Nyacc 0.86.0.
(nyacc-for-mes): Remove.
2018-09-08 20:36:30 +02:00
445ecce923
gnu: nyacc: Update to 0.86.0.
...
* gnu/packages/patches/nyacc-binary-literals.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (nyacc): Update to 0.86.0, add patch.
2018-09-08 20:36:30 +02:00
39b5d8fd9d
gnu: Add frotz, frotz-dumb-terminal, and frotz-sdl.
...
* gnu/packages/games.scm (frotz, frotz-dumb-terminal, frotz-sdl): New
variables.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-09-08 13:41:10 -04:00
090e3768e8
gnu: linux-libre: Update to 4.18.6.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.6.
(%linux-libre-hash): Update hash.
2018-09-07 21:05:14 -04:00
4be8fdd3cc
gnu: linux-libre@4.14: Update to 4.14.68.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.68.
(%linux-libre-4.14-hash): Update hash.
2018-09-07 21:03:03 -04:00
ddb419ce04
gnu: linux-libre@4.9: Update to 4.9.125.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.125.
2018-09-07 21:02:30 -04:00
48d17ba1d3
gnu: linux-libre@4.4: Update to 4.4.154.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.154.
2018-09-07 21:01:48 -04:00
9b6c435564
services: 'instantiate-missing-services' reaches fixed point.
...
Fixes a bug whereby services indirectly depended on would not be
automatically instantiated.
* gnu/services.scm (instantiate-missing-services): Loop back when the
length of ADJUSTED is greater than that of INSTANCES.
* tests/services.scm ("instantiate-missing-services, indirect"): New test.
2018-09-07 23:00:39 +02:00
9f1f200c04
gnu: diffoscope: Update to 100.
...
* gnu/packages/package-management.scm (diffoscope): Update to 100.
2018-09-07 17:59:16 +02:00
afdd1555c4
gnu: indent: Add version 2.2.12.
...
* gnu/packages/code.scm (indent-2.2.12): New variable.
2018-09-07 17:57:04 +02:00
6b4f99102c
gnu: gdb: Update to 8.2.
...
* gnu/packages/gdb.scm (gdb): Update to 8.2.
2018-09-07 17:55:55 +02:00
15214828a5
gnu: guile-json: Update to 1.2.0.
...
* gnu/packages/guile.scm (guile-json): Update to 1.2.0.
[license]: Change to GPL3+.
2018-09-07 17:55:51 +02:00
214452ffd3
gnu: Add r-ggformula.
...
* gnu/packages/cran.scm (r-ggformula): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
c61f7bc543
gnu: Add r-mosaiccore.
...
* gnu/packages/cran.scm (r-mosaiccore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
77b33e0ede
gnu: Add r-ggstance.
...
gnu/packages/cran.scm (r-ggstance): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
12da2a5e58
gnu: Add r-abctools.
...
* gnu/packages/cran.scm (r-abctools): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
cadc10a513
gnu: Add r-abcrf.
...
* gnu/packages/cran.scm (r-abcrf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
40c10917bc
gnu: Add r-abcp2.
...
* gnu/packages/cran.scm (r-abcp2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
12498b59e7
gnu: emacs-ess: Update to 17.11.
...
* gnu/packages/emacs.scm (emacs-ess): Update to 17.11
[url]: Use github for https
[snippet]: update julia-mode substitution, only build info doc, bypass failing test
[propagated-inputs]: Add emacs-julia-mode
[description]: Mention that ESS supports Julia and JAGS (which replaces OpenBUGS)
[arguments]: Remove 'set-home' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
1540075c79
vm: Make UUID computation really deterministic.
...
Fixes <https://bugs.gnu.org/32652 >.
* gnu/system/vm.scm (operating-system-uuid)[service-name,
file-system-digest]: New procedures.
Map these over services and file systems and hash the result.
* tests/guix-system.sh: Add test.
2018-09-07 11:40:05 +02:00
0012e0dd56
gnu: knot: Update to 2.7.2.
...
* gnu/packages/dns.scm (knot): Update to 2.7.2.
2018-09-07 03:01:40 +02:00
91cc2a38de
gnu: Wireshark: Update to 2.6.3 [fixes CVE-2018-{14994,16056,16057,16058}].
...
* gnu/packages/networking.scm (wireshark): Update to 2.6.3.
2018-09-06 17:05:42 -04:00
1e066f0706
gnu: curl: Update replacement to 7.61.1 [fixes CVE-2018-14618].
...
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.61.1.
(curl-7.61.0): Replace variable with ...
(curl-7.61.1): ... new variable.
2018-09-06 17:02:52 -04:00
21f5f351fb
gnu: libgme: Update to 0.6.2.
...
* gnu/packages/music.scm (libgme): Update to 0.6.2.
[native-inputs]: Add gcc-4.9.
2018-09-06 11:01:52 -04:00
7df945656c
services: hpcguix-web: Set SSL_CERT_DIR.
...
Previously Git pulls over HTTPS would fail with:
guix/git.scm:132:7: In procedure update-cached-checkout:
Throw to key `git-error' with args `(#<<git-error> code: -17 message: "the SSL certificate is invalid" class: 16>)'.
* gnu/services/web.scm (hpcguix-web-shepherd-service): Pass
"SSL_CERT_DIR=/etc/ssl/certs".
* doc/guix.texi (Web Services): Mention certificates.
2018-09-06 13:49:06 +02:00
f66be84d08
gnu: gfortran, gcc-objc, gcc-objc++: Add version 8.
...
* gnu/packages/gcc.scm (gfortran-8, gcc-objc-8, gcc-objc++-8): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-06 11:12:40 +02:00
b290a631a0
gnu: guile-present: Install .go files to libdir.
...
* gnu/packages/plotutils.scm (guile-present)[source](modules, snippet):
Remove.
2018-09-06 10:49:42 +02:00
89874fd156
gnu: guile-charting: Install .go files to libdir.
...
* gnu/packages/plotutils.scm (guile-charting)[source](modules, snippet):
Remove.
2018-09-06 10:48:44 +02:00
b3ca2d8883
gnu: hpcguix-web: Update to 9ff40fc.
...
* gnu/packages/web.scm (hpcguix-web): Update to 9ff40fc.
[arguments]: In 'wrap-program' phase, add guile-gcrypt, guile-git, and
guile-bytestructures to DEPS.
2018-09-06 10:46:07 +02:00
96d6c41dfa
gnu: guile-commonmark: Install .go files to libdir.
...
* gnu/packages/guile.scm (guile-commonmark)[source](snippet): Change the
"modir = " and "godir = " line separately, allowing .go files to be
installed to $(libdir).
2018-09-06 10:43:01 +02:00
d53aeeafcc
Add missing use-modules clause.
...
This is a follow-up to commit 5dfe491290
2018-09-06 04:53:32 +02:00
79b283e433
gnu: ccache: Update to 3.4.3.
...
* gnu/packages/ccache.scm (ccache): Update to 3.4.3.
[arguments]: Remove obsolete 'munge-failing-test' phase.
2018-09-06 02:33:47 +02:00
d83477adf9
gnu: font-fira-code: Update to 1.205.
...
* gnu/packages/fonts.scm (font-fira-code): Update to 1.205.
2018-09-06 02:33:47 +02:00
a5c70c2e0e
gnu: libmpdclient: Update to 2.15.
...
* gnu/packages/mpd.scm (libmpdclient): Update to 2.15.
2018-09-06 02:33:47 +02:00
00a43cb81c
gnu: pigx-scrnaseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
c2b4f81e51
gnu: pigx-bsseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
7cd40c8c5d
gnu: pigx-chipseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
ca248f1db9
gnu: pigx-rnaseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
dff5640a59
gnu: r-rcas: Use standard version of ghc-pandoc-citeproc.
...
* gnu/packages/bioinformatics.scm (r-rcas)[native-inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc".
2018-09-05 20:03:09 +02:00
f33a4748b7
gnu: r-modelmetrics: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.0.
[propagated-inputs]: Add r-data-table.
2018-09-05 20:03:09 +02:00
0d279d607a
gnu: r-robustbase: Update to 0.93-2.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-2.
2018-09-05 20:03:09 +02:00
8e499d756a
gnu: r-rann: Update to 2.6.
...
* gnu/packages/statistics.scm (r-rann): Update to 2.6.
2018-09-05 20:03:09 +02:00
314e8e763f
gnu: r-ggthemes: Update to 4.0.1.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.0.1.
[propagated-inputs]: Remove r-assertthat and r-colorspace; add r-purrr,
r-stringr, and r-tibble.
2018-09-05 20:03:09 +02:00
e5db6890ad
gnu: r-ztable: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-ztable): Update to 0.2.0.
[propagated-inputs]: Add r-flextable, r-magrittr, r-moonbook, r-officer,
r-rcolorbrewer, r-scales, and r-stringr.
2018-09-05 20:03:08 +02:00
f0519c8fae
gnu: r-zoo: Update to 1.8-3.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-3.
2018-09-05 20:03:08 +02:00
8da236a377
gnu: r-gtools: Update to 3.8.1.
...
* gnu/packages/statistics.scm (r-gtools): Update to 3.8.1.
2018-09-05 20:03:08 +02:00
c28d8d8db0
gnu: r-kernlab: Update to 0.9-27.
...
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-27.
2018-09-05 20:03:08 +02:00
c0608f815c
gnu: r-adaptivesparsity: Update to 1.6.
...
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Update to 1.6.
[propagated-inputs]: Add r-mass and r-matrix.
2018-09-05 20:03:08 +02:00
a207bca2ad
gnu: r-codedepends: Move from cran to bioconductor.
...
* gnu/packages/cran.scm (r-codedepends): Move from here...
* gnu/packages/bioconductor.scm (r-codedepends): ...to here.
2018-09-05 20:03:08 +02:00
5dfe491290
gnu: r-graph: Move from bioinformatics to bioconductor.
...
* gnu/packages/bioinformatics.scm (r-graph): Move from here...
* gnu/packages/bioconductor.scm (r-graph): ...to here.
2018-09-05 20:03:08 +02:00
caaec88651
gnu: r-ggpubr: Update to 0.1.8.
...
* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8.
[propagated-inputs]: Add r-glue and r-polynom.
2018-09-05 20:03:08 +02:00
a9b02ddd73
gnu: r-codedepends: Update to 0.6.5.
...
* gnu/packages/cran.scm (r-codedepends): Update to 0.6.5.
[propagated-inputs]: Add r-graph.
2018-09-05 20:03:08 +02:00
2e6909baf0
gnu: r-later: Update to 0.7.4.
...
* gnu/packages/cran.scm (r-later): Update to 0.7.4.
2018-09-05 20:03:08 +02:00
12132229b0
gnu: r-maptools: Update to 0.9-3.
...
* gnu/packages/cran.scm (r-maptools): Update to 0.9-3.
2018-09-05 20:03:08 +02:00
7a96c4e0a0
gnu: r-fnn: Update to 1.1.2.1.
...
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.1.
2018-09-05 20:03:08 +02:00
19950821d7
gnu: r-heatmaply: Update to 0.15.2.
...
* gnu/packages/cran.scm (r-heatmaply): Update to 0.15.2.
2018-09-05 20:03:08 +02:00
1fe9919a57
gnu: r-tsa: Update to 1.2.
...
* gnu/packages/cran.scm (r-tsa): Update to 1.2.
[propagated-inputs]: Remove r-tseries.
2018-09-05 20:03:08 +02:00
be5642eb69
gnu: r-statnet-common: Update to 4.1.4.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.4.
2018-09-05 20:03:08 +02:00
e32368c130
gnu: r-metap: Update to 1.0.
...
* gnu/packages/cran.scm (r-metap): Update to 1.0.
[propagated-inputs]: Add r-rdpack.
2018-09-05 20:03:07 +02:00
d97d98e142
gnu: r-tinytex: Update to 0.8.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.8.
2018-09-05 20:03:07 +02:00
6f5b157e3d
gnu: r-pillar: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.3.0.
[propagated-inputs]: Add r-fansi.
2018-09-05 20:03:07 +02:00
69bf449bf1
gnu: r-xts: Update to 0.11-0.
...
* gnu/packages/cran.scm (r-xts): Update to 0.11-0.
[native-inputs]: Remove.
2018-09-05 20:03:07 +02:00
1b3b2a72ee
gnu: r-mice: Update to 3.3.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.3.0.
2018-09-05 20:03:07 +02:00
a7265593d3
gnu: r-pan: Update to 1.6.
...
* gnu/packages/cran.scm (r-pan): Update to 1.6.
2018-09-05 20:03:07 +02:00
e7630cc931
gnu: r-jomo: Update to 2.6-4.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.6-4.
[propagated-inputs]: Add r-ordinal.
2018-09-05 20:03:07 +02:00
b8f6e2f82a
gnu: Add r-ordinal.
...
* gnu/packages/cran.scm (r-ordinal): New variable.
2018-09-05 20:03:07 +02:00
dc66835226
gnu: Add r-ucminf.
...
* gnu/packages/cran.scm (r-ucminf): New variable.
2018-09-05 20:03:07 +02:00
45c156bf81
gnu: r-broom: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-broom): Update to 0.5.0.
[propagated-inputs]: Add r-backports, r-dplyr, r-purrr, and r-tibble; remove
r-plyr and r-psych.
2018-09-05 20:03:07 +02:00
2d2b95d151
gnu: r-ipred: Update to 0.9-7.
...
* gnu/packages/cran.scm (r-ipred): Update to 0.9-7.
2018-09-05 20:03:07 +02:00
c73752cac5
gnu: r-pls: Update to 2.7-0.
...
* gnu/packages/cran.scm (r-pls): Update to 2.7-0.
2018-09-05 20:03:07 +02:00
b00e8ae771
gnu: r-glue: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.3.0.
2018-09-05 20:03:07 +02:00
b72de5b3f6
gnu: r-callr: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-callr): Update to 3.0.0.
[propagated-inputs]: Add r-base64enc.
2018-09-05 20:03:07 +02:00
e3c1e93e35
gnu: r-reprex: Update to 0.2.0.
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* gnu/packages/cran.scm (r-reprex): Update to 0.2.0.
[propagated-inputs]: Add r-clipr, r-rlang, and r-withr.
2018-09-05 20:03:07 +02:00
2cdd9d4f83
gnu: r-reticulate: Update to 1.10.
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* gnu/packages/cran.scm (r-reticulate): Update to 1.10.
2018-09-05 20:03:07 +02:00
cb96d81be4
gnu: r-doby: Update to 4.6-2.
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* gnu/packages/cran.scm (r-doby): Update to 4.6-2.
2018-09-05 20:03:07 +02:00
589bd1c426
gnu: Add r-flextable.
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* gnu/packages/cran.scm (r-flextable): New variable.
2018-09-05 20:03:06 +02:00
78f2c08c0b
gnu: r-rmarkdown: Use latest version of Pandoc.
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* gnu/packages/statistics.scm (r-rmarkdown)[propagated-inputs]: Replace
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:06 +02:00
f9f4578ba0
Revert "gnu: ghc-tasty: Update to 1.1.0.3."
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This reverts commit 3ad6b89090
2018-09-05 20:03:06 +02:00
90708323a1
Revert "gnu: ghc-base-compat: Update to 0.10.4."
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This reverts commit 0fa2c552fc
2018-09-05 20:03:06 +02:00
0fd7d59dc3
gnu: Add r-moonbook.
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* gnu/packages/cran.scm (r-moonbook): New variable.
2018-09-05 20:03:06 +02:00
aaed237d1b
gnu: Add r-nortest.
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* gnu/packages/cran.scm (r-nortest): New variable.
2018-09-05 20:03:06 +02:00
1f560b9cdb
gnu: Add r-sjmisc.
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* gnu/packages/cran.scm (r-sjmisc): New variable.
2018-09-05 20:03:06 +02:00
cfc0631433
gnu: Add r-sjlabelled.
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* gnu/packages/cran.scm (r-sjlabelled): New variable.
2018-09-05 20:03:06 +02:00
de059e4bd3
gnu: Add r-prediction.
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* gnu/packages/cran.scm (r-prediction): New variable.
2018-09-05 20:03:06 +02:00
bfee9ce88f
gnu: Add r-snakecase.
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* gnu/packages/cran.scm (r-snakecase): New variable.
2018-09-05 20:03:06 +02:00
c183fa2688
gnu: Add r-officer.
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* gnu/packages/cran.scm (r-officer): New variable.
2018-09-05 20:03:06 +02:00
5dbe7aa920
gnu: r-googlesheets: Update to 0.3.0.
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* gnu/packages/statistics.scm (r-googlesheets): Update to 0.3.0.
[propagated-inputs]: Add r-tibble.
2018-09-05 20:03:06 +02:00
88cb7aa9e7
gnu: r-plotly: Update to 4.8.0.
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* gnu/packages/statistics.scm (r-plotly): Update to 4.8.0.
[propagated-inputs]: Add r-promises and r-rlang.
2018-09-05 20:03:06 +02:00
195eec737c
gnu: r-matrixstats: Update to 0.54.0.
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* gnu/packages/statistics.scm (r-matrixstats): Update to 0.54.0.
2018-09-05 20:03:06 +02:00
e2a2c3378e
gnu: r-r-rsp: Update to 0.43.0.
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* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.0.
2018-09-05 20:03:06 +02:00
eefa7c7f3d
gnu: r-r-utils: Update to 2.7.0.
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* gnu/packages/statistics.scm (r-r-utils): Update to 2.7.0.
2018-09-05 20:03:06 +02:00
e926159eb3
gnu: r-e1071: Update to 1.7-0.
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* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.
2018-09-05 20:03:05 +02:00
2aafa73a94
gnu: r-xml: Update to 3.98-1.16.
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* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.16.
2018-09-05 20:03:05 +02:00
41f6685388
gnu: r-rcpparmadillo: Update to 0.9.100.5.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.100.5.0.
2018-09-05 20:03:05 +02:00
19cb93be55
gnu: r-git2r: Update to 0.23.0.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.23.0.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
2848c52c5e
gnu: r-roxygen2: Update to 6.1.0.
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* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.0.
[propagated-inputs]: Add r-pkgload and r-purrr.
[native-inputs]: Add r-knitr.
2018-09-05 20:03:05 +02:00
9b7e8df85b
gnu: r-ade4: Update to 1.7-13.
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* gnu/packages/statistics.scm (r-ade4): Update to 1.7-13.
2018-09-05 20:03:05 +02:00
7f38b31ecb
gnu: r-xtable: Update to 1.8-3.
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* gnu/packages/statistics.scm (r-xtable): Update to 1.8-3.
2018-09-05 20:03:05 +02:00
6b02569f1d
gnu: r-dbplyr: Update to 1.2.2.
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* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.2.
2018-09-05 20:03:05 +02:00
3299bc1c5e
gnu: r-yaml: Update to 2.2.0.
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* gnu/packages/statistics.scm (r-yaml): Update to 2.2.0.
2018-09-05 20:03:05 +02:00
2a96a093ec
gnu: r-evaluate: Update to 0.11.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.11.
2018-09-05 20:03:05 +02:00
3bf390279d
gnu: r-scales: Update to 1.0.0.
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* gnu/packages/statistics.scm (r-scales): Update to 1.0.0.
[propagated-inputs]: Remove r-dichromat and r-plyr.
2018-09-05 20:03:05 +02:00
97c81cc174
gnu: r-stringi: Update to 1.2.4.
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* gnu/packages/statistics.scm (r-stringi): Update to 1.2.4.
2018-09-05 20:03:05 +02:00
e362be8e89
gnu: Add r-pkgload.
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* gnu/packages/cran.scm (r-pkgload): New variable.
2018-09-05 20:03:05 +02:00
4f8247b54b
gnu: Add r-pkgbuild.
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* gnu/packages/cran.scm (r-pkgbuild): New variable.
2018-09-05 20:03:05 +02:00
1ec1989f80
gnu: r-httpuv: Update to 1.4.5.
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* gnu/packages/web.scm (r-httpuv): Update to 1.4.5.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
f077174178
gnu: r-scran: Update to 1.8.4.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
8e44ff0c0d
gnu: r-scater: Update to 1.8.4.
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* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
e69c07e61a
gnu: r-hdf5array: Update to 1.8.1.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.1.
2018-09-05 20:03:04 +02:00
16527f1cbc
gnu: r-ggbio: Update to 1.28.5.
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* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.5.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
70daf9362b
gnu: r-biovizbase: Update to 1.28.2.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.2.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
ff7c7d62f4
gnu: r-keggrest: Update to 1.20.1.
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* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.1.
2018-09-05 20:03:04 +02:00
3c55304688
gnu: r-edaseq: Update to 2.14.1.
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* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.1.
2018-09-05 20:03:04 +02:00
eb251fe524
gnu: r-igraph: Update to 1.2.2.
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* gnu/packages/graph.scm (r-igraph): Update to 1.2.2.
2018-09-05 20:03:04 +02:00
c273bcdfce
gnu: r-diffusionmap: Update to 1.1-0.1.
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* gnu/packages/graph.scm (r-diffusionmap): Update to 1.1-0.1.
2018-09-05 20:03:04 +02:00
6f6aef80e3
gnu: r-seurat: Update to 2.3.4.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.4.
[source]: Remove snippet.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Remove r-caret, r-diffusionmap, r-fnn, r-gdata, r-ranger,
r-stringr, r-tclust, and rvgam; add r-httr.
2018-09-05 20:03:04 +02:00
07bd90ce90
gnu: r-msnbase: Update to 2.6.3.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.3.
2018-09-05 20:03:04 +02:00
4ee8c37cca
gnu: r-maldiquant: Update to 1.18.
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* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.18.
2018-09-05 20:03:04 +02:00
48b21f8b6b
gnu: r-seqminer: Update to 6.1.
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* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.1.
2018-09-05 20:03:04 +02:00
ad2ed8d01f
gnu: r-genomicfeatures: Update to 1.32.2.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.2.
2018-09-05 20:03:04 +02:00
f2e79823c6
gnu: r-rtracklayer: Update to 1.40.6.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.6.
2018-09-05 20:03:04 +02:00
Timothy Sample