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Author SHA1 Message Date
Efraim Flashner eb4f2cd7e3 gnu: glpk: Update to 4.59. 
* gnu/packages/maths.scm (glpk): Update to 4.59.
 2016-03-12 23:07:09 +02:00
Mark H Weaver 2c9f0b0770 Merge branch 'master' into security-updates 2016-03-12 15:07:41 -05:00
Efraim Flashner 9591e11a4c gnu: samba: Update to 4.3.6 [fixes CVE-2015-7560, CVE-2016-0771]. 
* gnu/packages/samba.scm (samba): Update to 4.3.6.
 2016-03-12 21:53:03 +02:00
Leo Famulari e1c644a044 gnu: accountsservice: Use HTTPS URL. 
* gnu/packages/freedesktop.scm (accountsservice)[source]: Use HTTPS URL.
 2016-03-12 12:20:18 -05:00
Andreas Enge dfbe56c36d gnu: mupdf: Update to 1.8. 
* gnu/packages/pdf.scm (mupdf): Update to 1.8.
 2016-03-12 10:03:38 +01:00
Andreas Enge 8e755b1bcd gnu: mupdf: Simplify package. 
* gnu/packages/pdf.scm (mupdf)[source]: Drop patch and part of snippet
  modifying permissions of files added by the patch.
  [arguments]: Use #:make-flags instead of modified build and install phases.
  Drop superfluous module inclusion. Use modify-phases syntax.
* gnu/packages/patches/mupdf-buildsystem-fix.patch: Remove patch.
* gnu-system.am (dist_patch_DATA): Unregister patch.
 2016-03-12 09:56:27 +01:00
Danny Milosavljevic 0ede252b66 gnu: Add fluxbox. 
* gnu/packages/wm.scm (fluxbox): New variable.

Co-authored-by: Eric Bavier <bavier@member.fsf.org>
 2016-03-11 20:43:51 -06:00
Mark H Weaver 81a9653983 gnu: webkitgtk: Update to 2.10.8 [fixes CVE-2016-1726]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.8.
 2016-03-11 17:59:05 -05:00
Leo Famulari bce6f7ce63 gnu: openexr: Disable broken test to fix build on i686. 
* gnu/packages/graphics.scm (openexr)[arguments]: New field.
 2016-03-11 15:08:32 -05:00
Ludovic Courtès 66a30a3ea4 gnu: libevent: Update to 2.0.22 [fixes CVE-2015-6525]. 
* gnu/packages/libevent.scm (libevent): Update to 2.0.22.
 2016-03-11 16:33:50 +01:00
Ludovic Courtès ef0f0d5f97 gnu: vorbis-tools: Patch buffer overflow [fixes CVE-2015-6749]. 
* gnu/packages/patches/vorbis-tools-CVE-2015-6749.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xiph.scm (vorbis-tools)[source]: Use it.
 2016-03-11 16:33:50 +01:00
Nils Gillmann d381962f35 gnu: Add powwow. 
* gnu/packages/games.scm (powwow): New variable.
 2016-03-11 08:37:11 +08:00
Roel Janssen a0a71439fa gnu: Add bioawk. 
* gnu/packages/bioinformatics.scm (bioawk): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-10 18:37:25 -05:00
Mark H Weaver 7bf4bd0991 gnu: linux-libre: Update to 4.4.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.4.5.
 2016-03-10 18:17:31 -05:00
Raimon Grau 9514662322 gnu: Add nload. 
* gnu/packages/networking.scm (nload): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-10 16:48:16 -05:00
Leo Famulari ff22f01d67 gnu: dropbear: Update to 2016.72 [fixes CVE-2016-3116]. 
* gnu/packages/ssh.scm (dropbear): Update to 2016.72.
 2016-03-10 15:34:05 -05:00
Leo Famulari efa3752964 gnu: openssh: Update to 7.2p2 [fixes CVE-2016-3115]. 
* gnu/packages/ssh.scm (openssh): Update to 7.2p2.
 2016-03-10 15:34:05 -05:00
Efraim Flashner a232ce429e gnu: catch: Update to 1.3.5. 
* gnu/packages/check.scm (catch): Update to 1.3.5.
 2016-03-10 21:41:24 +02:00
Efraim Flashner 34a6f4dcf9 gnu: cppunit: Update to 1.13.2. 
* gnu/packages/check.scm (cppunit): Update to 1.13.2.
[source]: Change to libreoffice's hosted release tarballs.
[home-page]: Change to freedesktop.
 2016-03-10 21:25:31 +02:00
Efraim Flashner 591f1d3e4c gnu: lcov: Update to 1.12. 
* gnu/packages/code.scm (lcov): Update to 1.12.
 2016-03-10 20:20:26 +02:00
Efraim Flashner 1d116171a0 gnu: the-silver-searcher: Update to 0.31.0. 
* gnu/packages/code.scm (the-silver-searcher): Update to 0.31.0.
 2016-03-10 20:17:50 +02:00
Efraim Flashner 1e42d8b8ba gnu: complexity: Update to 1.10. 
* gnu/packages/code.scm (complexity): Update to 1.10.
 2016-03-10 20:15:15 +02:00
Efraim Flashner 9720651942 gnu: libass: Update to 0.13.2. 
* gnu/packages/video.scm (libass): Update to 0.13.2.
 2016-03-10 18:23:40 +02:00
Efraim Flashner 83820c0f10 gnu: obs: Update to 0.13.2. 
* gnu/packages/video.scm (obs): Update to 0.13.2.
 2016-03-10 18:23:40 +02:00
Mark H Weaver c3499ad6b8 gnu: icecat: Add several security fixes. 
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-bug-1248851.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-03-10 10:52:41 -05:00
Efraim Flashner 2f9862ffd0 gnu: isc-dhcp: Update bundled bind to 9.9.8-P4 [fixes CVE-2016-1285, CVE-2016-1286]. 
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.8-P4.
 2016-03-10 09:49:04 +02:00
Efraim Flashner 0d88031c2f gnu: bind-utils: Update to 9.10.3-P4 [fixes CVE-2016-1285, CVE-2016-1286]. 
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P4.
 2016-03-10 09:29:55 +02:00
Ricardo Wurmus 82f145ef7a gnu: custom-gcc: Delete broken or conflicting executables. 
* gnu/packages/gcc.scm (custom-gcc)[arguments]: Add phase to remove
executables that are non-functional or conflict with the executables of
"gcc".
 2016-03-10 07:12:27 +01:00
宋文武 ce6027bf43 gnu: nautilus: Don't propagate gtk+. 
* gnu/packages/gnome.scm (nautilus): Move gtk+ from propagated-inputs to inputs.
 2016-03-10 08:27:53 +08:00
Andreas Enge 8bcdc23fd0 gnu: texlive: Make texlive-bin and texlive-texmf private. 
* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Define the variables
  as non-public; they should not be installed into a profile.
 2016-03-09 22:36:45 +01:00
Andreas Enge fde6060347 gnu: po4a: Use texlive-minimal instead of texlive-bin. 
* gnu/packages/gettext.scm (po4a)[inputs]: Replace texlive-bin by
  texlive-minimal.
 2016-03-09 22:36:45 +01:00
Andreas Enge aad375c9bc gnu: statistics: Remove import of unused texlive module. 
* gnu/packages/statistics.scm: Do not import (gnu packages texlive).
 2016-03-09 22:36:45 +01:00
Andreas Enge 289adba7a3 gnu: gnuplot: Use texlive-minimal instead of texlive-bin. 
* gnu/packages/maths.scm (gnuplot)[inputs]: Replace texlive-bin by
  texlive-minimal.
 2016-03-09 22:36:45 +01:00
Tobias Geerinckx-Rice fb9ca51130 gnu: simple-scan: Update to 3.19.91. 
* gnu/packages/gnome.scm (simple-scan): Update to 3.19.91.
[arguments]: Add 'clean' phase.
 2016-03-09 15:55:33 -05:00
Mark H Weaver f97334220c gnu: pidgin-otr: Update to 4.0.2. 
* gnu/packages/messaging.scm (pidgin-otr): Update to 4.0.2.
 2016-03-09 15:51:16 -05:00
Andreas Enge 5adb3a4db4 gnu: libotr: Remove version 3.2.1. 
* gnu/packages/messaging.scm (libotr-3): Remove variable.
 2016-03-09 21:31:18 +01:00
Leo Famulari 89e58e8e8c libotr: Update to 4.1.1 [fixes CVE-2016-2851]. 
* gnu/packages/messaging.scm (libotr): Update to 4.1.1.
[native-inputs]: New field.
 2016-03-09 15:19:50 -05:00
Ludovic Courtès f5a9103991 gnu: dbus: Incorporate "dbus-helper-search-path.patch". 
* gnu/packages/glib.scm (dbus)[source]: Apply
"dbus-helper-search-path.patch".
(dbus/activation): Remove.
* gnu/services/dbus.scm (<dbus-configuration>)[dbus]: Default to DBUS.
(dbus-service): Likewise.
 2016-03-09 15:31:23 +01:00
Ludovic Courtès 255f730879 gnu: eudev: Add dependency on blkid. 
* gnu/packages/linux.scm (eudev)[inputs]: Add UTIL-LINUX.
(eudev-with-blkid): Remove.
* gnu/services/base.scm (udev-service): Use EUDEV instead of
EUDEV-WITH-BLKID.
* gnu/system.scm (%base-packages): Likewise.
 2016-03-09 15:26:09 +01:00
Ludovic Courtès 297a36abfc gnu: graphite2: Update to 1.3.6. 
* gnu/packages/fontutils.scm (graphite2)[replacement]: Remove.
[version, source]: Update to 1.3.6.
(graphite2-1.3.6): Remove.
 2016-03-09 15:23:12 +01:00
Ludovic Courtès 4cff124bbf gnu: openssl: Update to 1.0.2g. 
* gnu/packages/tls.scm (openssl)[replacement]: Remove.
[version, source]: Bump to 1.0.2g.  Use "openssl-c-rehash-in.patch"
instead of "openssl-c-rehash.patch".
(openssl-1.0.2g): Remove.
* gnu-system.am (dist_patch_DATA): Remove "openssl-c-rehash.patch".
 2016-03-09 15:20:34 +01:00
Ludovic Courtès 4d1a35fabc gnu: perl: Incorporate patch for CVE-2016-2381. 
* gnu/packages/perl.scm (perl)[source]: Add "perl-CVE-2016-2381.patch".
[replacement]: Remove.
(perl-fixed): Remove.
 2016-03-09 15:17:12 +01:00
Ludovic Courtès 6da23c0429 gnu: complexity: Update to 1.9. 
* gnu/packages/code.scm (complexity): Update to 1.9.
 2016-03-09 15:10:20 +01:00
Efraim Flashner 00eb9fa3e2 gnu: Add liblangtag. 
* gnu/packages/libreoffice.scm (liblangtag): New variable.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2016-03-09 14:27:19 +01:00
Andreas Enge ebc816311c gnu: libreoffice: Enable parallel build. 
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Enable parallel
  build.
 2016-03-09 14:27:19 +01:00
Ludovic Courtès 112024826d system: Explicitly set umask to 022 in /etc/profile. 
Fixes <http://bugs.gnu.org/22650>.
Reported by myglc2 <myglc2@gmail.com>.

* gnu/system.scm (operating-system-etc-service)[profile]: Invoke
'umask'.
 2016-03-08 23:30:53 +01:00
Ludovic Courtès efb107e0cd packages: Gracefully report packages not found. 
Fixes a thinko introduced in 1b846da8c3
that would lead to a backtrace when looking for an unknown package.

* gnu/packages.scm (%find-package): Correct logic when checking for
FALLBACK?.
 2016-03-08 11:48:21 +01:00
Ludovic Courtès 95cd4971d0 packages: Support the deprecated "NAME-VERSION" syntax. 
Fixes a typo introduced in 1b846da8c3 that
would lead to a backtrace when using the deprecated syntax.

* gnu/packages.scm (%find-package): Turn the first argument to
'call-with-values' into a thunk.  Use #:select instead of '@' to select
the right 'package-name->name+version' procedure.
 2016-03-08 11:38:46 +01:00
Ludovic Courtès 7befee308b packages: Clarify NAME-VERSION deprecation message. 
* gnu/packages.scm (%find-package): Clarify message; remove trailing
period.
 2016-03-08 11:36:16 +01:00
Efraim Flashner e224495ce1 gnu: jasper: Add fixes for CVE-2016-1577, CVE-2016-2089, CVE-2016-2116. 
* gnu/packages/patches/jasper-CVE-2016-1557.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jasper)[source]: Add patches.
 2016-03-08 11:54:58 +02:00
Leo Famulari 165e0382b3 gnu: libreoffice: Update to 5.0.5.2 [fixes CVE-2016-{0794, 0795}]. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.0.5.2.
 2016-03-07 22:55:45 -05:00
Mark H Weaver a90d24715b gnu: linux-libre: Update to 4.1.19. 
* gnu/packages/linux.scm (linux-libre): Update to 4.1.19.
 2016-03-07 19:17:39 -05:00
Mark H Weaver ac00a3d897 gnu: linux-libre: Update to 4.4.4. 
* gnu/packages/linux.scm (linux-libre): Update to 4.4.4.
 2016-03-07 19:17:39 -05:00
Andy Wingo ef7516aa04 gnu: network-manager: Update to 1.0.10. 
* gnu/packages/gnome.scm (network-manager): Update to 1.0.10.
  (network-manager-applet): Likewise.
  (%network-manager-glib-duplicate-test-patch): Remove.
 2016-03-07 21:15:37 +01:00
Andy Wingo b4f59d87a6 gnu: network-manager: Disable failing tests. 
* gnu/packages/gnome.scm (network-manager): Add pre-configure phase.
 2016-03-07 21:14:23 +01:00
Andy Wingo c42602b5cb gnu: elogind: Update to 219.13. 
* gnu/packages/freedesktop.scm (elogind): Update to 219.13.  Remove
  build fix that is no longer needed.  Update home page.
 2016-03-07 21:10:00 +01:00
Andy Wingo a7e50a2a03 gnu: system: Add elogind cgroup mount. 
* gnu/system/file-systems.scm (%elogind-file-systems): Add elogind
  cgroup mount.
 2016-03-07 21:10:00 +01:00
Ricardo Wurmus 0e2f2aebed gnu: Add Blender. 
* gnu/packages/graphics.scm (blender): New variable.
 2016-03-07 20:58:25 +01:00
宋文武 201cfb81d1 gnu: Add gst-python. 
* gnu/packages/gstreamer.scm (python-gst, python2-gst): New variables.
 2016-03-07 09:57:20 +08:00
宋文武 fa7cf82ebe gnu: python-pygobject: Propagate glib and libffi. 
* gnu/packages/glib.scm (python-pygobject): Move glib and libffi to propagated-inputs.
(python2-pygobject)[inputs]: Remove glib and libffi.
 2016-03-07 09:57:20 +08:00
宋文武 e28f95a963 gnu: python-pygobject: Add search path for GI_TYPELIB_PATH. 
* gnu/packages/glib.scm (python-pygobject)[native-search-paths]: Use the
same search paths as gobject-introspection.
 2016-03-07 09:57:20 +08:00
宋文武 b3585d9bda gnu: orc: Update to 0.4.25. 
* gnu/packages/gstreamer.scm (orc): Update to 0.4.25.
 2016-03-07 09:57:20 +08:00
宋文武 60a0886d72 services: Use 'packages->manifest' in 'packages->profile-entry'. 
This allows using (PACKAGE OUTPUT) in the packages field.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.

* gnu/services.scm (packages->profile-entry): Use 'packages->manifest'.
 2016-03-07 09:57:20 +08:00
Ludovic Courtès 956ad60cad services: elogind: Rely on D-Bus activation. 
Previously elogind was explicitly spawned by the Shepherd.  Now it is
activated by dbus-daemon on demand.

* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'fix-service-file' phase.
* gnu/services/desktop.scm (elogind-shepherd-service): Remove.
(elogind-dbus-service): New procedure.
(elogind-service-type): Do not extend SHEPHERD-ROOT-SERVICE-TYPE.  Use
'elogind-dbus-service' for DBUS-ROOT-SERVICE-TYPE.
 2016-03-07 00:01:03 +01:00
Ricardo Wurmus afadb05e58 gnu: alsa-modular-synth: Insert space to separate linker flags. 
* gnu/packages/audio.scm (alsa-modular-synth)[arguments]: Add build
phase to separate linker flags.
 2016-03-06 21:17:05 +01:00
Ricardo Wurmus ee6a88b118 gnu: alsa-modular-synth: Drop Qt 4. 
* gnu/packages/audio.scm (alsa-modular-synth)[inputs]: Replace "qt-4"
with "qt".
[arguments]: Add configure flag to build with Qt 5.
 2016-03-06 21:17:05 +01:00
Andreas Enge 451b5c5dc6 gnu: vigra: Update to a development snapshot. 
* gnu/packages/image.scm (vigra): Update to a git snapshot to fix build
  problems with the current python-numpy.
 2016-03-05 19:09:42 +01:00
Andreas Enge d7c4619bd1 gnu: Add einstein. 
* gnu/packages/games.scm (einstein): New variable.
* gnu/packages/patches/einstein-build.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
 2016-03-05 18:44:43 +01:00
Andreas Enge 03d55eeca7 gnu: jalv: Drop Qt-4 support. 
* gnu/packages/audio.scm (jalv)[inputs]: Drop qt-4. It does not receive any
  upstream security updates, and Qt-4 support is marked as experimental in
  the jalv documentation.
 2016-03-05 12:20:09 +01:00
Leo Famulari eda0522aab gnu: letsencrypt, python-acme: Update to 0.4.2. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.4.2.
(python-acme, python2-acme): Update to 0.4.2.
 2016-03-04 18:10:00 -05:00
Leo Famulari 65f1b8a591 gnu: python-cryptography, python-cryptography-vectors: Update to 1.2.3. 
These packages should be updated together.

* gnu/packages/python.scm (python-cryptography): Update to 1.2.3.
(python-cryptography-vectors): Update to 1.2.3.
 2016-03-04 18:09:20 -05:00
Ludovic Courtès 44abcb2868 doc: Mention syslogd configuration. 
* gnu/services/base.scm (syslog-service): Add xref to Inetutils in the
docstring.
(%default-syslog.conf): Export.
* doc/guix.texi (Base Services): Update accordingly.
 2016-03-04 11:48:52 +01:00
Ludovic Courtès fe4e698d77 gnu: gnome: Sync description and synopsis. 
* gnu/packages/gnome.scm (gnome)[synopsis, description]: Use official
GNU blurb.
 2016-03-04 11:48:52 +01:00
Ludovic Courtès ffaf83dfb1 gnu: nano: Update to 2.5.3. 
* gnu/packages/nano.scm (nano): Update to 2.5.3.
 2016-03-04 11:48:52 +01:00
Ludovic Courtès 4978ffcfc2 gnu: libgit2: Update to 0.23.4. 
* gnu/packages/version-control.scm (libgit2): Update to 0.23.4.
 2016-03-04 11:48:52 +01:00
Ludovic Courtès 9c7e7eadfa gnu: findnewest: Update to 0.3. 
* gnu/packages/version-control.scm (findnewest): Update to 0.3.
 2016-03-04 11:48:52 +01:00
Leo Famulari c7658f8f2c gnu: exim: Update to 4.86.2 [fixes CVE-2016-1531]. 
* gnu/packages/mail.scm (exim): Update to 4.86.2.
 2016-03-03 20:38:47 -05:00
David Thompson 4a52671131 gnu: Add byzanz. 
* gnu/packages/gnome.scm (byzanz): New variable.
 2016-03-03 20:23:07 -05:00
Efraim Flashner 50b66bf1b0 gnu: youtube-dl: Update to 2016.03.01. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.03.01.
 2016-03-03 22:55:46 +02:00
Efraim Flashner 581873b55d gnu: mpv: Update to 0.16.0. 
* gnu/packages/video.scm (mpv): Update to 0.16.0.
 2016-03-03 22:53:37 +02:00
Leo Famulari d8173f21f7 gnu: perl: Replace with patched version [fixes CVE-2016-2381]. 
* gnu/packages/patches/perl-CVE-2016-2381.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[replacement]: New field.
(perl-fixed): New variable.
* gnu/packages/commencement.scm (perl-boot0)[replacement]: New field.
 2016-03-03 14:56:23 -05:00
Efraim Flashner 7b3f2682de gnu: irssi: Support proxy, socks, bot. 
* gnu/packages/irc.scm (irssi)[arguments]: Add configure flags to
support proxy, socks and bot.
 2016-03-03 19:04:31 +02:00
Efraim Flashner fd41741bdc gnu: irssi: Update to 0.8.18. 
* gnu/packages/irc.scm (irssi): Update to 0.8.18.
[source]: Update uri.
 2016-03-03 19:04:31 +02:00
Petter d0a65256a3 system: GRUB menu entry says "beta" instead of "alpha" 
* gnu/system.scm (kernel->grub-label): Change "alpha" to "beta'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-03 17:42:47 +01:00
Ludovic Courtès 16cc99610d system: Add rfkill to '%base-packages'. 
* gnu/system.scm (%base-packages): Add RFKILL.
 2016-03-03 17:42:47 +01:00
Ricardo Wurmus 649e9b3b47 gnu: python-pysam: Move cython and setuptools to native inputs. 
* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move
"python-cython" and "python-setuptools" from here...
[native-inputs]: ... to here.
 2016-03-03 13:47:19 +01:00
Ricardo Wurmus 3acb8c857c gnu: deeptools: Update to 2.1.1. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.1.1.
[inputs]: Add "python2-numpydoc" and "python2-pybigwig".
 2016-03-03 13:47:12 +01:00
Ricardo Wurmus 14bda1ff49 gnu: deeptools: Change "propagated-inputs" to "inputs". 
* gnu/packages/bioinformatics.scm (deeptools)[propagated-inputs]: Move
all inputs from here...
[inputs]: ...to here.
 2016-03-03 13:47:02 +01:00
Ricardo Wurmus 69e0e03c36 gnu: Add python-pybigwig. 
* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig):
  New variables.
 2016-03-03 13:46:52 +01:00
Ricardo Wurmus d454640c38 gnu: python-pysam: Update to 0.8.4. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.8.4.
 2016-03-03 13:46:39 +01:00
Ricardo Wurmus 55a9a8c2b9 gnu: python-pysam, python2-pysam: Move to bioinformatics.scm. 
* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
  ...here.
 2016-03-03 13:46:26 +01:00
Lukas Gradl e90819c40a gnu: Add procmail. 
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file.
 * gnu-system.am (dist_patch_DATA): Add it.
 * gnu/packages/mail.scm (procmail): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-02 20:44:18 -05:00
Mathieu Lirzin 1b846da8c3 utils: Use '@' for separating package names and version numbers. 
This provides the ability to use numbers in package names.

Fixes <http://bugs.gnu.org/19219>.

* guix/utils.scm (package-name->name+version): New procedure.
* gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument.
Use the previous method when no package is found.
(specification->package+output, specification->package): Adapt
documentation to new syntax.
* doc/guix.texi (Invoking guix package, Invoking guix import): Likewise.
* guix/ui.scm (package-specification->name+version+output): Likewise.
* guix/scripts/import/hackage.scm (show-help): Likewise.
* tests/guix-build.sh: Adapt to new syntax.
* tests/guix-lint.sh: Likewise.
* tests/guix-package.sh: Likewise.
* tests/ui.scm ("package-specification->name+version+output"): Likewise.
* tests/utils.scm ("package-name->name+version"): Likewise.
* NEWS: Mention new syntax.
 2016-03-02 21:41:41 +01:00
Mathieu Lirzin fad155d47e packages: Factorize package specification search. 
* gnu/packages.scm (%find-package): New procedure.
(specification->package, specification->package+output): Use it.
 2016-03-02 21:41:41 +01:00
Mark H Weaver b134a80c36 gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes]. 
* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-03-02 15:13:15 -05:00
Mark H Weaver bd009cd95d gnu: nss: Update to 3.21.1. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.1.
 2016-03-02 15:13:14 -05:00
Mark H Weaver d47ad0890c gnu: graphite2: Replace with 1.3.6 [unspecified security fixes]. 
See <https://bodhi.fedoraproject.org/updates/FEDORA-2016-dec1faadc5>

* gnu/packages/fontutils.scm (graphite2)[replacement]: New field.
(graphite2-1.3.6): New variable.
 2016-03-02 15:12:18 -05:00
Jessica Tallon c285a400a2 gnu: Add password-store. 
* gnu/packages/password-utils.scm (password-store): New variable.

Co-authored-by: Andreas Enge <andreas@enge.fr>
Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-03-02 14:18:51 -05:00
Roel Janssen dd6e70f920 gnu: Add cppcheck. 
* gnu/packages/check.scm (cppcheck): New variable.
 2016-03-02 15:17:56 +01:00
Mark H Weaver ed742bc4b4 gnu: openssl: Enable ssl2 at build time to ensure ABI compatible graft. 
Fixes <https://debbugs.gnu.org/22876>
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.

* gnu/packages/tls.scm (openssl-1.0.2g)[arguments]: Override the inherited
  'configure' phase to add "enable-ssl2" as an argument to ./config.
 2016-03-02 01:58:42 -05:00
宋文武 6150b5c780 gnu: xfce: Don't wrap 'startxfce4'. 
The necessary environment variables are set by 'etc/profile' now.

* gnu/packages/xfce.scm (xfce)[build-system]: Use 'trivial-build-system'.
[arguments]: Simplify.
 2016-03-02 08:32:47 +08:00
Leo Famulari 5e8276dcf4 gnu: ilmbase: Add patch to fix build on i686. 
Fixes <http://bugs.gnu.org/22049>.

* gnu/packages/patches/ilmbase-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (ilmbase)[source]: Add patch.
 2016-03-01 19:08:31 -05:00
Leo Famulari 88ccca45f6 gnu: openssh: Update to 7.2p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.2p1.
 2016-03-01 16:32:41 -05:00
Leo Famulari 599860d2b9 gnu: libressl: Update to 2.2.6. 
* gnu/packages/tls.scm (libressl): Update to 2.2.6.
 2016-03-01 16:30:13 -05:00
Leo Famulari 043c3f0bed gnu: parallel: Update to 20160222. 
* gnu/packages/parallel.scm (parallel): Update to 20160222.
 2016-03-01 15:15:38 -05:00
Pjotr Prins f82c8c3cba gnu: r-go-db: Bioconductor changed URL for data downloads. 
* gnu/packages/bioinformatics.scm (r-go-db)[source]: Update data URL.
 2016-03-01 19:47:26 +02:00
Pjotr Prins 27acfaea4c gnu: r-iranges: Update to 2.4.8. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.4.8.
 2016-03-01 19:47:26 +02:00
Pjotr Prins 8921841da8 gnu: r-s4vectors: Update to 0.8.11. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.8.11.
 2016-03-01 19:47:25 +02:00
Pjotr Prins b70fa3c7f7 gnu: r-ggplot2: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.0.0.
 2016-03-01 19:47:24 +02:00
Ludovic Courtès caeadfddb0 gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}]. 
See <http://openssl.org/news/secadv/20160301.txt>.
Also fixes <http://bugs.gnu.org/22831>.

* gnu/packages/patches/openssl-c-rehash-in.patch: New file.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2g): New variable.
 2016-03-01 16:00:46 +01:00
Efraim Flashner d06fc008bd gnu: tiled: Use 'modify-phases'. 
* gnu/packages/game-development.scm (tiled)[arguments]: Use 'modify-phases'.
 2016-03-01 14:55:55 +02:00
Efraim Flashner e8ea01d902 gnu: tiled: Update to 0.15.1. 
* gnu/packages/game-development.scm (tiled): Update to 0.15.1.
 2016-03-01 14:55:55 +02:00
Ricardo Wurmus d1e32822b4 gnu: Add PePr. 
* gnu/packages/bioinformatics.scm (pepr): New variable.
 2016-03-01 11:51:24 +01:00
Ricardo Wurmus d29150b55d gnu: Add bwa-pssm. 
* gnu/packages/bioinformatics.scm (bwa-pssm): New variable.
 2016-03-01 10:31:04 +01:00
Ricardo Wurmus b4464d384c gnu: Add gdsl. 
* gnu/packages/datastructures.scm (gdsl): New variable.
 2016-03-01 10:30:04 +01:00
Efraim Flashner e288f0075c gnu: weechat: Move to irc.scm. 
* gnu/packages/weechat.scm (weechat): Move from here ...
* gnu/packages/irc.scm (weechat): ... to here.
* gnu/packages/weechat.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove weechat.scm.
 2016-03-01 11:09:32 +02:00
Efraim Flashner a61bd6a5e3 gnu: irssi: Use 'modify-phases'. 
* gnu/packages/irc.scm (irssi)[arguments]: Use 'modify-phases'.
 2016-03-01 11:09:32 +02:00
Efraim Flashner 27930f853d gnu: irssi: Move to irc.scm. 
* gnu/packages/irssi.scm (irssi): Move from here ...
* gnu/packages/irc.scm (irssi): ... to here.
* gnu/packages/irssi.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove irssi.scm.
 2016-03-01 11:09:32 +02:00
Efraim Flashner 980f058d92 gnu: Add quassel. 
* gnu/packages/irc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
 2016-03-01 11:09:32 +02:00
Efraim Flashner 550791b8f1 gnu: Add snorenotify. 
* gnu/packages/kde.scm (snorenotify): New variable.
 2016-03-01 11:09:32 +02:00
Efraim Flashner d34c594aeb gnu: Add qca. 
* gnu/packages/kde.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
 2016-03-01 11:09:32 +02:00
Efraim Flashner d8ea278204 gnu: Add oxygen-icons. 
* gnu/packages/kde-frameworks.scm (oxygen-icons): New variable.
 2016-03-01 11:09:32 +02:00
Manolis Ragkousis fea1f275bc gnu: Add desmume. 
* gnu/packages/games.scm (desmume): New variable.
 2016-02-29 22:04:53 -05:00
Mark H Weaver 8d5ceb120d gnu: curl: Use updated libssh2 [fixes CVE-2016-7087]. 
* gnu/packages/curl.scm (curl)[inputs]: Use libssh2.
* gnu/packages/ssh.scm (libssh2-1.4): Remove variable.
 2016-02-29 20:09:29 -05:00
Christopher Allan Webber aa5946edb2 gnu: Remove python2-pil. 
python2-pil is vulnerable to several security issues (CVE-2016-0740,
CVE-2016-0775, and CVE-2016-2533).  Fortunately, python2-pillow provides
equivalent functionality, so this package can be cleanly removed.

* gnu/packages/python.scm (python2-pil): Remove variable.
 2016-02-29 15:01:20 -08:00
Ricardo Wurmus daeb61f7a9 gnu: guile-for-guile-emacs: Use guile-2.0 search paths. 
* gnu/packages/guile.scm (guile-for-guile-emacs)[native-search-paths]:
  Use the same search paths as guile-2.0.
 2016-02-29 07:10:40 +01:00
Leo Famulari 823e2ed4b3 gnu: msmtp: Install msmtpq. 
* gnu/packages/mail.scm (msmtp)[arguments]: Install msmtpq scripts.
 2016-02-28 22:06:24 -05:00
Ludovic Courtès 1a59b6d014 gnu: git: Install symlinks instead of hard links. 
This reduces nar size by a factor of 10.
Fixes <http://bugs.gnu.org/21949>.

* gnu/packages/version-control.scm (git)[arguments]: Pass
NO_INSTALL_HARDLINKS as #:make-flags.
 2016-02-28 16:41:53 +01:00
Andreas Enge dbb7a08175 gnu: libwnck: Rename variable for GTK+ 2 variant. 
* gnu/packages/gnome.scm (libwnck-1): Rename this...
  (libwnck-2): ...to this.
* gnu/packages/xfce.scm (xfce4-panel, xfce4-xkb-plugin, xfce4-session,
  xfwm4, xfdesktop)[inputs]: Adapt.
 2016-02-28 15:59:56 +01:00
Efraim Flashner 2236da6e97 gnu: xrandr: Update to 1.5.0. 
* gnu/packages/xorg.scm (xrandr): Update to 1.5.0.
 2016-02-28 14:13:30 +02:00
Efraim Flashner 97a0859593 gnu: libqmi: Update to 1.12.8. 
* gnu/packages/freedesktop.scm (libqmi): Update to 1.12.8.
 2016-02-28 13:42:34 +02:00
Efraim Flashner 9012e118ff gnu: wayland: Update to 1.10.0. 
* gnu/packages/freedesktop.scm (wayland): Update to 1.10.0.
[arguments]: Disable parallel tests.
 2016-02-28 13:32:52 +02:00
Efraim Flashner d3e3d7f02a gnu: libinput: Update to 1.2.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.2.0.
 2016-02-28 13:08:08 +02:00
Efraim Flashner a724924beb gnu: python-tornado: Update to 4.3. 
* gnu/packages/python.scm (python-tornado): Update to 4.3.
[native-inputs]: Add python-backports-abc.
(python2-tornado)[inputs]: Add python2-singledispatch.
 2016-02-28 10:53:42 +02:00
Efraim Flashner 6b59fc1020 gnu: Add python-backports-abc. 
* gnu/packages/python.scm (python-backports-abc): New variable.
 2016-02-28 10:53:35 +02:00
Mark H Weaver 9579118922 gnu: bitlbee: Update to 3.4.1. 
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
 2016-02-27 21:10:56 -05:00
Tobias Geerinckx-Rice 9c7f7e2da9 gnu: btrfs-progs: Update to 4.4.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.4.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-02-27 22:39:51 +02:00
Ricardo Wurmus a003b5b650 gnu: scribus: Update to 1.5.1. 
* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-02-27 16:34:20 +01:00
Ricardo Wurmus b951e26fe5 gnu: arandr: Add "xrandr" to inputs. 
* gnu/packages/xdisorg.scm (arandr)[inputs]: Add "xrandr".
[arguments]: Add build phase "make-xrandr-available" to ensure "xrandr"
executable is found at runtime.
 2016-02-27 16:25:26 +01:00
Mark H Weaver b35461748b gnu: Fix misplaced commas (unquote). 
Fix many occurrences of comma (unquote) being placed immediately after the
previous list item, e.g. ("ncurses", ncurses) in the inputs.

* gnu/packages/base.scm (patch, gnu-make),
  gnu/packages/bioinformatics.scm (hmmer),
  gnu/packages/bittorrent.scm (aria2),
  gnu/packages/compression.scm (pbzip2),
  gnu/packages/databases.scm (recutils),
  gnu/packages/fonts.scm (font-terminus),
  gnu/packages/freedesktop.scm (xdg-utils, elogind),
  gnu/packages/games.scm (gnujump),
  gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit),
  gnu/packages/gnunet.scm (gnunet),
  gnu/packages/gnuzilla.scm (mozjs, nspr),
  gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf),
  gnu/packages/lua.scm (lua),
  gnu/packages/openstack.scm (python-swiftclient),
  gnu/packages/perl.scm (perl-json-any),
  gnu/packages/polkit.scm (polkit-qt),
  gnu/packages/python.scm (wrap-python3, python-oauthlib)
  (python-mccabe-0.2.1, python-contextlib2, python2-rauth),
  gnu/packages/qt.scm (qtkeychain),
  gnu/packages/ruby.scm (ruby-nokogiri),
  gnu/packages/screen.scm (screen),
  gnu/packages/ssh.scm (libssh),
  gnu/packages/video.scm (ffmpeg, mplayer),
  gnu/packages/vim.scm (vim),
  gnu/packages/xdisorg.scm (redshift),
  gnu/packages/xfce.scm (xfce4-panel, xfce4-settings),
  gnu/packages/xnee.scm (xnee),
  gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi),
  gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote).
 2016-02-27 08:49:26 -05:00
Ricardo Wurmus 48766ea85f gnu: Add emacs-god-mode. 
* gnu/packages/emacs.scm (emacs-god-mode): New variable.
 2016-02-27 13:50:18 +01:00
Ricardo Wurmus 048bfba163 gnu: Add gtklick. 
* gnu/packages/music.scm (gtklick): New variable.
 2016-02-27 12:27:21 +01:00
Ricardo Wurmus 6ab4712d6e gnu: python2-pygtk: Add libglade to inputs. 
* gnu/packages/gtk.scm (python2-pygtk)[inputs]: Add "libglade".
 2016-02-27 12:27:21 +01:00
Ricardo Wurmus a91d72e23a gnu: Add pyliblo. 
* gnu/packages/audio.scm (python-pyliblo, python2-pyliblo): New
  variables.
 2016-02-27 12:27:21 +01:00
Mark H Weaver b460a99890 gnu: linux-libre-4.1: Update to 4.1.18. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.18.
 2016-02-27 02:36:16 -05:00
Mark H Weaver 3dad786b64 gnu: linux-libre: Update to 4.4.3. 
* gnu/packages/linux.scm (linux-libre): Update to 4.4.3.
 2016-02-27 02:36:10 -05:00
Mark H Weaver 4ed737b2ab gnu: gtk-doc: Improve fix-docbook phase. 
* gnu/packages/gtk.scm (gtk-doc)[arguments]: In the 'fix-docbook' phase,
avoid hard-coding the docbook-xsl version number, and return #t.
 2016-02-25 22:24:32 -05:00
Danny Milosavljevic b31fbea566 gnu: Add python-psycopg2. 
* gnu/packages/python.scm (python-psycopg2, python2-psycopg2): New variables.
 2016-02-25 14:35:28 -08:00
Leo Famulari 7dd21101a3 gnu: diffoscope: Update to 49. 
* gnu/packages/package-management.scm (diffoscope): Update to 49.
[source]: Use pypi-uri.
[arguments]: Use python-3. Enable tests. Add 'dependency-on-python-magic' phase
and remove 'dependency-on-rpm' phase.
[native-inputs]: Remove python2-setuptools.
[inputs]: Replace python2-file, python2-debian, python2-libarchive-c,
python2-tlsh, python2-pytest, python2-chardet with python-3 variants.
 2016-02-25 17:06:25 -05:00
Rene Saavedra 66d59111e3 gnu: Add dconf-editor. 
* gnu/packages/gnome.scm (dconf-editor): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-25 16:36:10 -05:00
Andy Wingo 735e84c7bd gnu: libx264: Change source URL to HTTP. 
* gnu/packages/video.scm (libx264): Download via HTTP.  The videolan ftp
  server does not work with IPv6.
 2016-02-25 22:33:40 +01:00
Andy Wingo b4787e71ac gnu: gtk-doc: Fix build. 
* gnu/packages/gtk.scm (gtk-doc): Fix build.
 2016-02-25 22:33:20 +01:00
Efraim Flashner 2865c81c71 gnu: youtube-dl: Update to 2016.02.22. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.22.
 2016-02-25 22:54:03 +02:00
Efraim Flashner eb6e2e812a gnu: python-decorator: Update to 4.0.9. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.9.
 2016-02-25 21:05:37 +02:00
Efraim Flashner cc0c4fdedd gnu: python-traitlets: Update to 4.1.0. 
* gnu/packages/python.scm (python-traitlets): Update to 4.1.0.
[native-inputs]: Add python-mock.
 2016-02-25 21:05:37 +02:00
Efraim Flashner c6ebd40da1 gnu: python-mccabe: Update to 0.4.0. 
* gnu/packages/python.scm (python-mccabe): Update to 0.4.0.
[inputs]: Add python-pytest, python-pytest-runner.
(python-mccabe-0.2.1)[inputs]: Only use python-setuptools.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 43789136d2 gnu: python-flake8: Update to 2.5.4. 
* gnu/packages/python.scm (python-flake8): Update to 2.5.4.
[inputs]: Use recent python-pep8, python-pyflakes.
 2016-02-25 21:05:37 +02:00
Efraim Flashner db251311cf gnu: python-pep8: Update to 1.7.0. 
* gnu/packages/python.scm (python-pep8): Update to 1.7.0.
 2016-02-25 21:05:37 +02:00
Efraim Flashner a4d9609c98 gnu: python-networkx: Update to 1.11. 
* gnu/packages/python.scm (python-networkx): Update to 1.11.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 6f068e081b gnu: python-hypothesis: Update to 3.0.4. 
* gnu/packages/python.scm (python-hypothesis): Update to 3.0.4.
[native-inputs]: Remove python-setuptools.
(python2-hypothesis): Use 'strip-python2-variant'.
[native-inputs]: Add python2-enum34, python2-setuptools.
 2016-02-25 21:05:37 +02:00
Efraim Flashner fee04c198c gnu: python-html5lib: Update to 1.0b8. 
* gnu/packages/python.scm (python-html5lib): Update to 1.0b8.
 2016-02-25 21:05:37 +02:00
Efraim Flashner b6785c2e3a gnu: python-isodate: Update to 0.5.4. 
* gnu/packages/python.scm (python-isodate): Update to 0.5.4.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 9d813ec147 gnu: python-wsgi-intercept: Update to 1.1.2. 
* gnu/packages/python.scm (python-wsgi-intercept): Update to 1.1.2.
[native-inputs]: Add python-six.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 29f20168cf gnu: python-pytest-localserver: Update to 0.3.5. 
* gnu/packages/python.scm (python-pytest-localserver): Update to 0.3.5.
 2016-02-25 21:05:37 +02:00
Efraim Flashner da8b011d2a gnu: python-requests-toolbelt: Update to 0.6.0. 
* gnu/packages/python.scm (python-requests-toolbelt): Update to 0.6.0.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 74a066f9a0 gnu: python-requests: Update to 2.9.1. 
* gnu/packages/python.scm (python-requests): Update to 2.9.1.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 40981b5c18 gnu: python-wheel: Update to 0.29.0. 
* gnu/packages/python.scm (python-wheel): Update to 0.29.0.
 2016-02-25 21:05:37 +02:00
Christopher Allan Webber a8f20f63dc gnu: Add python-pastescript. 
* gnu/packages/python.scm (python-pastescript, python2-pastescript):
  New variables.
 2016-02-25 11:01:56 -08:00
Christopher Allan Webber c4a7904c21 gnu: Add python-paste. 
* gnu/packages/python.scm (python-paste, python2-paste): New variables.
* gnu/packages/patches/python-paste-remove-timing-test.patch: New file.
* gnu/packages/patches/python-paste-remove-website-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-02-25 11:01:45 -08:00
Mark H Weaver e62b5c6903 Merge branch 'media-updates' 2016-02-25 13:50:19 -05:00
Ludovic Courtès 736f9ffce2 gnu: Add missing import in bioinformatics.scm. 
This is a followup to 1baee94.

* gnu/packages/bioinformatics.scm: Add missing import.
 2016-02-25 12:48:08 +01:00
Nils Gillmann a65e2a02fc gnu: Add kyotocabinet. 
* gnu/packages/databases.scm (kyotocabinet): New variable.
 2016-02-25 11:56:00 +01:00
Ricardo Wurmus 1baee943ca gnu: Add libBigWig. 
* gnu/packages/bioinformatics.scm (libbigwig): New variable.
 2016-02-25 11:43:44 +01:00
Jan Nieuwenhuizen 1644f0cd87 gnu: guile-json: Update to 0.5.0. 
* gnu/packages/guile.scm (guile-json): Update to 0.5.0.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-02-25 09:19:30 +01:00
Ricardo Wurmus b16043a361 gnu: ardour: Update to 4.7. 
* gnu/packages/audio.scm (ardour): Update to 4.7.
 2016-02-25 09:17:35 +01:00
宋文武 f072e9adf5 gnu: xdg-utils: Propagate xprop and xset. 
Fixes <http://bugs.gnu.org/22755>.

* gnu/packages/freedesktop.scm (xdg-utils): Propagate xprop and xset.
 2016-02-25 08:54:42 +08:00
Leo Famulari 85267efb2a gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739]. 
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
  (libssh-0.5): Rename to...
  (libssh-0.6): ... this.  Update to 0.6.5.
  [source]: Add patch for CVE-2016-0739.
  (guile-ssh)[inputs]: Use libssh-0.6.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:09 -05:00
Leo Famulari 78d80c5c6a gnu: libssh2: Update to 1.7.0 [fixes CVE-2016-0787]. 
* gnu/packages/ssh.scm (libssh2): Update to 1.7.0.
  (libssh2-1.4): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:08 -05:00
Mark H Weaver bf6996c9cf gnu: xf86-video-intel: Update to 2.99.917-1-d167280. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-1-d167280.
 2016-02-24 13:56:57 -05:00
Efraim Flashner a49332a0c0 gnu: gdb: Update to 7.11. 
* gnu/packages/gdb.scm (gdb): Update to 7.11.
 2016-02-24 20:52:12 +02:00
Efraim Flashner c73210d7a9 gnu: kde-frameworks: Update to 5.19.0. 
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0.
(extra-cmake-modules): Update to 5.19.0.
 2016-02-24 20:25:25 +02:00
Andy Wingo 79fd74facd gnu: services: Start X with -configdir. 
* gnu/services/xorg.scm (%default-xorg-modules): New public variable.
(xorg-configuration-directory): New function.
(xorg-start-command): Add #:modules keyword argument, defaulting to
%default-xorg-modules.  Build an xorg.conf.d directory from those
modules, and pass it to X via the -configdir parameter.
 2016-02-24 11:49:57 -05:00
Andy Wingo d0a6437f7d gnu: libxaw: Update to 1.0.13. 
* gnu/packages/xorg.scm (libxaw): Update to 1.0.13.
 2016-02-24 11:49:57 -05:00
Andy Wingo ea9763dae0 gnu: libxt: Update to 1.1.5. 
* gnu/packages/xorg.scm (libxt): Update to 1.1.5.
 2016-02-24 11:49:57 -05:00
Andy Wingo f1aeae762d gnu: libx11: Update to 1.6.3. 
* gnu/packages/xorg.scm (libx11): Update to 1.6.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 0eae6b2d91 gnu: xorg-server: Update to 1.18.1. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.18.1.
 2016-02-24 11:49:57 -05:00
Andy Wingo 7606baa8f9 gnu: libxxf86vm: Update to 1.1.4. 
* gnu/packages/xorg.scm (libxxf86vm): Update to 1.1.4.
 2016-02-24 11:49:57 -05:00
Andy Wingo 9a5f739ef8 gnu: libxvmc: Update to 1.0.9. 
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo 61f29af1db gnu: libxrandr: Update to 1.5.0. 
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.0.
 2016-02-24 11:49:57 -05:00
Andy Wingo d51b8529e6 gnu: libxi: Update to 1.7.6. 
* gnu/packages/xorg.scm (libxi): Update to 1.7.6.
 2016-02-24 11:49:57 -05:00
Andy Wingo 10d85db449 gnu: xproto: Update to 7.0.28. 
* gnu/packages/xorg.scm (xproto): Update to 7.0.28.
 2016-02-24 11:49:57 -05:00
Andy Wingo 6fad350498 gnu: libxrender: Update to 0.9.9. 
* gnu/packages/xorg.scm (libxrender): Update to 0.9.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo 42ca6c8528 gnu: libxp: Update to 1.0.3. 
* gnu/packages/xorg.scm (libxp): Update to 1.0.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 97b6f9632e gnu: xvinfo: Update to 1.1.3. 
* gnu/packages/xorg.scm (xvinfo): Update to 1.1.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 625f4cae0a gnu: xmodmap: Update to 1.0.9. 
* gnu/packages/xorg.scm (xmodmap): Update to 1.0.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo 85c64cb200 gnu: xlsatoms: Update to 1.1.2. 
* gnu/packages/xorg.scm (xlsatoms): Update to 1.1.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo 379e1d875b gnu: xkeyboard-config: Update to 2.17. 
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.17.
 2016-02-24 11:49:57 -05:00
Andy Wingo ed7abe52e0 gnu: xkbevd: Update to 1.1.4. 
* gnu/packages/xorg.scm (xkbevd): Update to 1.1.4.
 2016-02-24 11:49:57 -05:00
Andy Wingo ab2d710cc2 gnu: xinput: Update to 1.6.2. 
* gnu/packages/xorg.scm (xinput): Update to 1.6.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo 2e5a0b7850 gnu: xhost: Update to 1.0.7. 
* gnu/packages/xorg.scm (xhost): Update to 1.0.7.
 2016-02-24 11:49:57 -05:00