c69d27db57
gnu: Add r-calibrate.
...
* gnu/packages/cran.scm (r-calibrate): New variable.
2017-08-17 17:25:47 +02:00
33ce12e293
gnu: Add r-auc.
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* gnu/packages/cran.scm (r-auc): New variable.
2017-08-17 17:25:47 +02:00
4a007ffafe
gnu: Add r-annotationhub.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
2017-08-17 17:25:47 +02:00
5f96f30f5d
gnu: Add r-interactivedisplaybase.
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
2017-08-17 17:25:46 +02:00
a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b.
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* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
2017-08-17 18:17:00 +03:00
aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures.
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* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
2017-08-17 18:16:57 +03:00
721e1987d0
gnu: Add mgba.
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* gnu/packages/games.scm (mgba): New public variable.
2017-08-17 10:56:04 +02:00
a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0.
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* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
2017-08-17 09:12:46 +02:00
e3b861ce38
gnu: python-cython: Update to 0.26.
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* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
d6ef422fe7
gnu: Add fbreader.
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* gnu/packages/ebook.scm (fbreader): New variable.
2017-08-17 02:00:51 +02:00
84a52639c9
gnu: Add liblinebreak.
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* gnu/packages/ebook.scm (liblinebreak): New variable.
2017-08-17 01:56:38 +02:00
f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3.
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* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
2017-08-16 22:35:11 +02:00
f37995fa20
gnu: python-cryptography: Update to 2.0.3.
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* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
2017-08-16 22:35:10 +02:00
f886e7cab1
gnu: limnoria: Update to 2017.08.03.
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* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
2017-08-16 22:35:10 +02:00
e2a4c13023
gnu: cbatticon: Update to 1.6.6.
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* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
2017-08-16 22:35:10 +02:00
f207984985
gnu: Add gpick.
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* gnu/packages/image.scm (gpick): New variable.
2017-08-16 21:37:33 +03:00
d0b13d7b9b
gnu: fossil: Update to 2.2.
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* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
2017-08-16 21:37:32 +03:00
ab1bd285db
gnu: connman: Update to 1.35.
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* gnu/packages/connman.scm (connman): Update to 1.35.
2017-08-16 21:37:29 +03:00
e664200c0c
gnu: Add ltris.
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* gnu/packages/games.scm (ltris): New variable.
2017-08-16 11:28:12 -04:00
af4db693db
gnu: Add ghc-gitrev.
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* gnu/packages/haskell.scm (ghc-gitrev): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
e0ca14c7a8
gnu: Add ghc-geniplate-mirror.
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* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
298af2a8da
gnu: Add ghc-monadplus.
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* gnu/packages/haskell.scm (ghc-monadplus): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
005a08e3dc
gnu: Add ghc-fail.
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* gnu/packages/haskell.scm (ghc-fail): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
1eced2a7a8
gnu: Add ghc-edisoncore.
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* gnu/packages/haskell.scm (ghc-edisoncore): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
212ae09541
gnu: Add ghc-edisonapi.
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* gnu/packages/haskell.scm (ghc-edisonapi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
a623fd7fed
gnu: Add ghc-murmur-hash.
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* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
ca48a34594
gnu: Add ghc-data-hash.
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* gnu/packages/haskell.scm (ghc-data-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
adcb30642c
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16 17:57:40 +03:00
96f23b62e0
gnu: Add ghc-equivalence.
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* gnu/packages/haskell.scm (ghc-equivalence): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
3f8b8e731c
gnu: Add ghc-boxes.
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* gnu/packages/haskell.scm (ghc-boxes): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
be04f8020a
gnu: Add ghc-edit-distance.
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* gnu/packages/haskell.scm (ghc-edit-distance): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
867ed9776c
gnu: Add ghc-stmonadtrans.
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* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
f99a57dc28
gnu: Add ghc-strict.
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* gnu/packages/haskell.scm (ghc-strict): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
c12562e1e8
gnu: cpphs: Update to 1.20.8.
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* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:08 +02:00
2f7966c8e2
gnu: font-google-noto: Use font-build-system.
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* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:18:50 +02:00
d534f3a4d3
gnu: r-mzr: Fix building on aarch64 and armhf.
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* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
2017-08-16 12:36:25 +03:00
953a12fa9b
gnu: hdf4: Fix building on aarch64.
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* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
2017-08-16 09:33:11 +03:00
8343d373d5
gnu: cgit: Don't build cgit's special 'git:src' input.
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This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.
* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10 ): Remove variable.
2017-08-15 17:59:22 -04:00
6230e155af
gnu: Fix memcached service startup.
...
Memcached changes to the memcached user from root before writing the PID
file. This means that it must be able to write the PID file as the memcached
user.
To make this work, create the /var/run/memcached directory when the service
starts, make it owned by memcached, and change memcached to write the PID file
to /var/run/memcached/pid.
This wasn't picked up by the system test as the "service running" part was too
permissive, and only failed on an error. Instead, test the response from
calling start-service and check that the PID is a number.
* gnu/services/databases.scm (memcached-activation): New variable.
(memcached-shepherd-service): Change PID file location.
(memcached-service-type): Extend the activation-service-type.
* gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service
running" test to check the response from the shepherd.
2017-08-15 22:24:15 +01:00
2434f5cedf
gnu: Add dssi.
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* gnu/packages/music.scm (dssi): New variable.
2017-08-15 20:58:03 +02:00
425d66f7a7
gnu: Add emacs-highlight-symbol.
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* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:52:58 +02:00
be69176bbd
gnu: fish-guix: Use new download URL.
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* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:41:23 +02:00
dca82aefbc
gnu: p11-kit: Update to 0.23.8.
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* gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
2017-08-15 20:38:02 +02:00
6550e5ad64
gnu: signify: Update to 22.
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* gnu/packages/crypto.scm (signify): Update to 22.
2017-08-15 13:27:30 -04:00
06f31e50b1
gnu: diamond: Update to 0.9.10.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
2017-08-15 18:49:33 +10:00
3837108e40
gnu: bcftools: Fix building on aarch64.
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* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-15 10:31:20 +03:00
2d430f2923
Revert "gnu: pspp: Update to 0.11.0."
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This FTBFS on x86_64 and i686.
This reverts commit f4c808df5b
2017-08-15 10:03:40 +03:00
14f366e58d
gnu: youtube-dl: Update to 2017.08.13.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
2017-08-15 01:42:49 +02:00
f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5.
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* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
2017-08-15 01:08:01 +02:00
15428168ea
gnu: cvs: Fix CVE-2017-12836.
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* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
2017-08-14 15:55:31 -04:00
Ricardo Wurmus