Commit Graph

30835 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 3825b44448
gnu: xmlsec-nss: Fix tests (and hence build).
* gnu/packages/xml.scm (xmlsec-nss)[native-inputs]: Add nss:bin to
provide the certutil command.
2018-10-27 04:49:19 +02:00
Tobias Geerinckx-Rice 4795e5e177
gnu: units: Update to 2.18.
* gnu/packages/maths.scm (units): Update to 2.18.
2018-10-27 04:47:56 +02:00
Tobias Geerinckx-Rice 6d9a690927
gnu: parallel: Update to 20181022.
* gnu/packages/parallel.scm (parallel): Update to 20181022.
2018-10-27 04:47:19 +02:00
Tobias Geerinckx-Rice 574d877e40
gnu: gvpe: Update to 3.1.
* gnu/packages/vpn.scm (gvpe): Update to 3.1.
[source]: Remove obsolete snippet.
[native-inputs]: Add pkg-config.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b2d286545d
gnu: gama: Update to 2.01.
* gnu/packages/gps.scm (gama): Update to 2.01.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b106b78cf8
gnu: perl-x11-xcb: Update to 0.18.
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.18.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice 429a332b1c
gnu: flatbuffers: Update to 1.10.0.
* gnu/packages/serialization.scm (flatbuffers): Update to 1.10.0.
2018-10-27 04:47:18 +02:00
Eric Bavier 829785c11d
gnu: Add tnef.
* gnu/packages/mail.scm (tnef): New variable.
2018-10-26 21:16:42 -05:00
HiPhish 01a0a0c445
gnu: Add lua5.1-lpeg and lua5.1-lmpack.
* gnu/packages/lua.scm (lua5.1-lpeg): New variable.
* gnu/packages/serialization.scm (lua5.1-libmpack): New variable.

The packages lua-lpeg and lua-libmpack had no Lua 5.1 variants. These
packages will be needed to build Neovim properly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:17:00 +02:00
Pierre-Antoine Rouby 3239dcd38d
gnu: Add jp2a.
* gnu/packages/image.scm: New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:16:13 +02:00
Ludovic Courtès fdf0248428
gnu: sbcl-lift: Fix 'license' field.
The invalid 'license' field was preventing evaluations from completing.

* gnu/packages/lisp.scm (sbcl-lift)[license]: Change to LICENSE:EXPAT.
2018-10-26 21:07:03 +02:00
Nikolai Merinov 2e2b8635b9
gnu: rust: Update to 1.28.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.27): ... this.
(rust): New variable.
2018-10-26 18:11:15 +02:00
Nikolai Merinov e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues.
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build.  Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
2018-10-26 18:11:15 +02:00
Meiyo Peng 1fdcee026b
gnu: Add lxqt.
* gnu/packages/lxqt.scm (lxqt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng a457e3f6ef
gnu: libqtxdg: Simplify configure flags.
* gnu/packages/lxqt.scm (libqtxdg)[arugemnts]: Use relative path for
'QTXDGX_ICONENGINEPLUGIN_INSTALL_PATH'.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng 097166dfb0
gnu: lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.
* gnu/packages/lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:04 +08:00
Meiyo Peng 31fd62c8ca
gnu: Add obconf-qt.
* gnu/packages/lxqt.scm (obconf-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:06:57 +08:00
Meiyo Peng 32b74b7028
gnu: Add compton-conf.
* gnu/packages/lxqt.scm (compton-conf): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:41:38 +08:00
Meiyo Peng 9886134cc6
gnu: Add qps.
* gnu/packages/lxqt.scm (qps): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:36:43 +08:00
Meiyo Peng 7e9e775f44
gnu: Add qterminal.
* gnu/packages/lxqt.scm (qterminal): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:31:15 +08:00
Meiyo Peng 4b88ab554c
gnu: Add screengrab.
* gnu/packages/lxqt.scm (screengrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:20:21 +08:00
Meiyo Peng 604bdae7e5
gnu: Add lximage-qt.
* gnu/packages/lxqt.scm (lximage-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:12:17 +08:00
Meiyo Peng 26127ebb97
gnu: lxqt.scm: Sort packages into base, core, etc.
* gnu/packages/lxqt.scm: Sort packages into base, core, etc.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:05:12 +08:00
Meiyo Peng 0aab234954
gnu: Add qtermwidget.
* gnu/packages/lxqt.scm (qtermwidget): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 18:54:16 +08:00
Tobias Geerinckx-Rice 21c51ebd66
gnu: hplip: Update home page.
* gnu/packages/cups.scm (hplip)[home-page]: Follow its permanent
redirection.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice b17004f9f9
gnu: hplip: Update to 3.18.9.
* gnu/packages/cups.scm (hplip): Update to 3.18.9.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 2fba511e0f
gnu: libsigrok: Update to 0.5.1.
* gnu/packages/electronics.scm (libsigrok): Update to 0.5.1.
[arguments]: Adjust to split udev rules and clean up a little.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 0e8e29088f
gnu: dnsmasq: Update to 2.80 [security fixes].
* gnu/packages/dns.scm (dnsmasq): Update to 2.80.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice e81ddedaef
gnu: tinc: Use HTTPS for sources and home page.
* gnu/packages/vpn.scm (tinc)[source, home-page]: Use HTTPS.
2018-10-26 02:30:51 +02:00
Leo Famulari dea0178fb1
gnu: Mercurial: Update to 4.7.2.
* gnu/packages/version-control.scm (mercurial): Update to 4.7.2.
2018-10-25 20:00:27 -04:00
Meiyo Peng 84f6a9907b
gnu: Add pavucontrol-qt.
* gnu/packages/lxqt.scm (pavucontrol-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:38:57 +08:00
Meiyo Peng 8b1d43a755
gnu: Add lxqt-themes.
* gnu/packages/lxqt.scm (lxqt-themes): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:34:55 +08:00
Meiyo Peng 5663b5b073
gnu: Add lxqt-qtplugin.
* gnu/packages/lxqt.scm (lxqt-qtplugin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:25:54 +08:00
Meiyo Peng 643961bbc6
gnu: Add lxqt-powermanagement.
* gnu/packages/lxqt.scm (lxqt-powermanagement): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:21:26 +08:00
Meiyo Peng ca302c3e8c
gnu: Add lxqt-openssh-askpass.
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:17:16 +08:00
Meiyo Peng bf0da63aae
gnu: Add lxqt-policykit.
* gnu/packages/lxqt.scm (lxqt-policykit): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng a98000a462
gnu: Add lxqt-notificationd.
* gnu/packages/lxqt.scm (lxqt-notificationd): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng f2b48558df
gnu: lxqt.scm: Move qttools from inputs to native-inputs.
* gnu/packages/lxqt.scm: Move qttools from inputs to native-inputs.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:13 +08:00
Meiyo Peng 35bfe41a01
gnu: Add lxqt-config.
* gnu/packages/lxqt.scm (lxqt-config): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 19:16:18 +08:00
Ricardo Wurmus 7b63047c94
gnu: Add r-sjplot.
* gnu/packages/cran.scm (r-sjplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 489a6178e6
gnu: Add r-ggeffects.
* gnu/packages/cran.scm (r-ggeffects): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 413944234c
gnu: Add r-glmmtmb.
* gnu/packages/cran.scm (r-glmmtmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus aa4bde0b3a
gnu: Add r-sjstats.
* gnu/packages/cran.scm (r-sjstats): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 3b8a3f5548
gnu: Add r-tmb.
* gnu/packages/cran.scm (r-tmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9b3ecb60e2
gnu: Add r-bayesplot.
* gnu/packages/cran.scm (r-bayesplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus bd531e83d1
gnu: Add r-coin.
* gnu/packages/cran.scm (r-coin): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 63fcb88a50
gnu: Add r-pwr.
* gnu/packages/cran.scm (r-pwr): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 55a08dceb5
gnu: Add r-emmeans.
* gnu/packages/cran.scm (r-emmeans): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 7753b54366
gnu: Add r-multcomp.
* gnu/packages/cran.scm (r-multcomp): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 6ce07cf99d
gnu: Add r-th-data.
* gnu/packages/cran.scm (r-th-data): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 302db58552
gnu: Add r-sandwich.
* gnu/packages/cran.scm (r-sandwich): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 69bb2d9966
gnu: r-sjmisc: Update to 2.7.5.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.5.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9bf745c931
gnu: r-sjlabelled: Update to 1.0.14.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.14.
2018-10-25 05:17:42 +02:00
Tobias Geerinckx-Rice 9ac59ad30a
gnu: sfml: Update to 2.5.1.
* gnu/packages/game-development.scm (sfml): Update to 2.5.1.
2018-10-25 04:59:33 +02:00
Tobias Geerinckx-Rice 95f6adae34
gnu: sfml: Don't use unstable tarball.
* gnu/packages/game-development.scm (sfml)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-10-25 04:59:32 +02:00
Tobias Geerinckx-Rice b865e7c254
gnu: cdogs-sdl: Update to 0.6.8.
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.8.
2018-10-25 04:59:29 +02:00
Ricardo Wurmus e2ec95c4eb
gnu: Add pdfpc.
* gnu/packages/pdf.scm (pdfpc): New variable.
2018-10-25 01:08:09 +02:00
Tobias Geerinckx-Rice f65fdd95df
gnu: Add hangups.
* gnu/packages/messaging.scm (hangups): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 56a5ef4cb2
gnu: Add python-mechanicalsoup.
* gnu/packages/python-web.scm (python-mechanicalsoup)
(python2-mechanicalsoup): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 11d99192c7
gnu: Add python-reparser.
* gnu/packages/python.scm (python-reparser, python2-reparser):
New public variable.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice d4eb8a21a6
gnu: Add python-readlike.
* gnu/packages/python.scm (python-readlike, python2-readlike):
New public variables.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice 5b59c77585
gnu: minixml: Update to 2.12.
* gnu/packages/xml.scm (minixml): Update to 2.12.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice ac9f481979
gnu: iproute2: Update to 4.19.0.
* gnu/packages/linux.scm (iproute): Update to 4.19.0.
2018-10-24 21:34:20 +02:00
Tobias Geerinckx-Rice f437e39aa2
gnu: loksh: Use PREFIX.
* gnu/packages/shells.scm (loksh)[argumentss]: Substitute PREFIX for
DESTDIR #:make-flags.
2018-10-24 21:34:20 +02:00
Meiyo Peng c1144c78ad
gnu: Add libkscreen.
* gnu/packages/kde.scm (libkscreen): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng a6b941ddd1
gnu: lxqt.scm: Add prefix to licenses imports.
* gnu/packages/lxqt.scm: Import (guix licenses) with prefix "license:".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng 34e08de321
gnu: Add lxqt-admin.
* gnu/packages/lxqt.scm (lxqt-admin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng 2bdab26f06
gnu: Add lxqt-about.
* gnu/packages/lxqt.scm (lxqt-about): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng d6fd4a76eb
gnu: Add pcmanfm-qt.
* gnu/packages/lxqt.scm (pcmanfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng 79f9e4e0b5
gnu: Add libfm-qt.
* gnu/packages/lxqt.scm (libfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng dbb4f7d0a6
gnu: Add lxqt-sudo.
* gnu/packages/lxqt.scm (lxqt-sudo): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng cc7f417572
gnu: Add lxqt-runner.
* gnu/packages/lxqt.scm (lxqt-runner): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng af291d1cdf
gnu: Add lxqt-panel.
* gnu/packages/lxqt.scm (lxqt-panel): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng fbe645eafa
gnu: Add libsysstat.
* gnu/packages/lxqt.scm (libsysstat): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng fab3484657
gnu: Add lxqt-globalkeys.
* gnu/packages/lxqt.scm (lxqt-globalkeys): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Pierre Neidhardt 96b4977a19
gnu: Add gx-go.
* gnu/packages/ipfs.scm (gx-go): New variable.
2018-10-24 14:41:44 +02:00
Pierre Neidhardt e82ae67302
gnu: Add go-github-com-whyrusleeping-gx-util.
* gnu/packages/ipfs.scm (go-github-com-whyrusleeping-gx-util): New variable.
2018-10-24 14:41:44 +02:00
Pierre Neidhardt 5b6c3ad0cd
gnu: Add go-github-com-kr-fs.
* gnu/packages/golang.scm (go-github-com-kr-fs): New variable.
2018-10-24 14:41:44 +02:00
Efraim Flashner 96bdf904ac
gnu: dotherside: Update home-page.
* gnu/packages/qt.scm (dotherside)[home-page]: Fix project's home-page.
2018-10-24 14:17:53 +03:00
Pierre Neidhardt 202c1b9703
gnu: Add gx.
* gnu/packages/ipfs.scm (gx): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 566f13f845
gnu: Add go-github-com-ipfs-go-ipfs-api.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 247b1bd2b6
gnu: Add go-github-com-ipfs-go-ipfs-cmdkit-files.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 56eb7bd33c
gnu: Add go-github-com-whyrusleeping-stump.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-stump): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38566e975e
gnu: Add go-github-com-whyrusleeping-progmeter.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-progmeter): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 7bd9020e48
gnu: Add go-github-com-whyrusleeping-json-filter.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-json-filter): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt b5bb0b500b
gnu: Add go-github-com-urfave-cli.
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 20f48e4b5d
gnu: Add go-github-com-sabhiram-go-gitignore.
* gnu/packages/golang.scm (go-github-com-sabhiram-go-gitignore): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt ad8d463740
gnu: Add go-github-com-cheekybits-is.
* gnu/packages/golang.scm (go-github-com-cheekybits-is): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38d346dcc6
gnu: Add go-github-com-whyrusleeping-tar-utils.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-tar-utils): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 66fb6e292a
gnu: Add go-github-com-multiformats-go-multiaddr-net.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr-net): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt e53121b36f
gnu: Add go-github-com-multiformats-go-multiaddr.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 8cb9128173
gnu: Add go-github-com-mitchellh-go-homedir.
* gnu/packages/golang.scm (go-github-com-mitchellh-go-homedir): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 77d8a91792
gnu: Add go-github-com-libp2p-go-libp2p-metrics.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-metrics): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 43a5c17737
gnu: Add go-github-com-libp2p-go-libp2p-protocol.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-protocol): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 1db1e3c79e
gnu: Add go-github-com-libp2p-go-libp2p-peer.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-peer): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 2e42e587b4
gnu: Add go-github-com-multiformats-go-multihash.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multihash): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 9a7f157571
gnu: Add go-github-com-spaolacci-murmur3.
* gnu/packages/golang.scm (go-github-com-spaolacci-murmur3): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 90f2a84805
gnu: Add go-github-com-minio-blake2b-simd.
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 27d59d8bf5
gnu: Add go-github-com-gxed-hashland-keccakpg.
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 15272a5053
gnu: Add go-github-com-mr-tron-base58.
* gnu/packages/golang.scm (go-github-com-mr-tron-base58): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 71f3680499
gnu: Add go-github-com-libp2p-go-libp2p-crypto.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-crypto): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt ff2d11c3ce
gnu: Add go-github-com-minio-sha256-simd.
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt d5599afadf
gnu: Add go-github-com-btcsuite-btcd-btcec.
* gnu/packages/golang.scm (go-github-com-btcsuite-btcd-btcec): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 171c3259fc
gnu: Add go-github-com-btcsuite-btclog.
* gnu/packages/golang.scm (go-github-com-btcsuite-btclog): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 6a95e3a3a4
gnu: Add go-github-com-davecgh-go-spew.
* gnu/packages/golang.scm (go-github-com-davecgh-go-spew): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 386bd7ba39
gnu: Add go-github-com-libp2p-go-flow-metrics.
* gnu/packages/golang.scm (go-github-com-libp2p-go-flow-metrics): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 48a279ee14
gnu: go-golang-org-x-crypto-union: Wrap all crypto packages.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Include
go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160,
go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3 in union.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 19789c8b91
gnu: Add go-golang-org-x-crypto-sha3.
* gnu/packages/golang.scm (go-golang-org-x-crypto-sha3): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 6fa257cca7
gnu: Add go-golang-org-x-crypto-blake2s.
* gnu/packages/golang.scm (go-golang-org-x-crypto-blake2s): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt a9010ead4c
gnu: Add go-golang-org-x-crypto-ripemd160.
* gnu/packages/golang.scm (go-golang-org-x-crypto-ripemd160): New variable.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 7eb0ad380b
gnu: Add go-golang-org-x-crypto-ed25519.
* gnu/packages/golang.scm (go-golang-org-x-crypto-ed25519): New variable.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 830dc25176
gnu: Move go-golang-org-x-crypto-union from syncthing.scm to golang.scm
* gnu/packages/syncthing.scm (go-golang-org-x-crypto-union): Delete.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Add.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 5787e15230
gnu: Move go-github-com-gogo-protobuf* from syncthing.scm to golang.scm
* gnu/packages/syncthing.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Delete.

* gnu/packages/golang.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Add.
2018-10-24 10:46:05 +02:00
Tobias Geerinckx-Rice 569adffe4b
gnu: pcsc-lite: Update to 1.8.24.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.24.
2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice 716cd19ad2
gnu: loksh: Update to 6.4.
* gnu/packages/shells.scm (loksh): Update to 6.4.
[inputs]: Add ncurses.
2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice e5d757709a
gnu: loksh: Don't use unstable tarball.
* gnu/packages/shells.scm (loksh)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-24 05:59:35 +02:00
Tobias Geerinckx-Rice d0d3ed6dfc
gnu: tinc: Update to 1.0.35 [fixes CVE-2018-{16737,16738,16758}].
* gnu/packages/vpn.scm (tinc): Update to 1.0.35.
2018-10-24 05:59:35 +02:00
Mark H Weaver ce7ceef37f
gnu: linux-libre: Update to 4.19.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.
(%linux-libre-hash): Update hash.
(%linux-libre-4.18-patches): Rename to ...
(%linux-libre-4.19-patches): ... this, and remove a patch that is
no longer needed.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-4.19-patches instead of %linux-libre-4.18-patches.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: Remove files.
* gnu/packages/aux-files/linux-libre/4.19-arm.conf,
gnu/packages/aux-files/linux-libre/4.19-arm64.conf,
gnu/packages/aux-files/linux-libre/4.19-i686.conf,
gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2018-10-23 22:57:14 -04:00
Tobias Geerinckx-Rice d9bcdfce29
gnu: mongodb: Use INVOKE.
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 94617bddb0
gnu: libbytesize: Update to 1.4.
* gnu/packages/c.scm (libbytesize): Update to 1.4.
[source]: Parametrise.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 50f5aa4b9e
gnu: xmlsec: Update to 1.2.27.
* gnu/packages/xml.scm (xmlsec): Update to 1.2.27.
[source]: Don't rely on NAME.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 0ba0ab814a
gnu: Add wavemon.
* gnu/packages/hardware.scm (wavemon): New public variable.
2018-10-24 03:58:20 +02:00
Mark H Weaver d78587edca
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].
Includes fixes for CVE-2018-12389, CVE-2018-12390, CVE-2018-12391,
CVE-2018-12392, CVE-2018-12393, CVE-2018-12395, CVE-2018-12396, and
CVE-2018-12397.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected changesets from the
upstream mozilla-esr60 repository.  Relabel some previously existing patches
to reflect CVE assignments.
2018-10-23 19:41:47 -04:00
Brett Gilio b4237a6ec0
gnu: emacs-nov-el: Update to 0.2.6.
* gnu/packages/emacs.scm (emacs-nov-el): Update to 0.2.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
Leo Famulari 12995856e2
gnu: libssh: Fetch the source code more efficiently.
* gnu/packages/ssh.scm (libssh)[source]: Use the git:// protocol.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
Laura Lazzati b55697fbb4
gnu: Add r-aspi.
* gnu/packages/cran.scm (r-aspi): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-10-23 23:20:13 +02:00
Pierre Neidhardt d89872f955
gnu: sbcl-parse-float: Remove comment about license.
* gnu/packages/lisp.scm (sbcl-parse-float): The license really is public domain.
2018-10-23 20:36:58 +02:00
Meiyo Peng bf076d8ba6
gnu: Add libstatgrab.
* gnu/packages/lxqt.scm (libstatgrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:39:09 +08:00
Meiyo Peng 64fac507dd
gnu: Add libdbusmenu-qt.
* gnu/packages/lxqt.scm (libdbusmenu-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:23:49 +08:00
Meiyo Peng d58aefdf06
gnu: lxqt.scm: Sort packages alphabetically.
* gnu/packages/lxqt.scm: Sort packages alphabetically.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:37:48 +08:00
Meiyo Peng 088096aa0e
gnu: lxqt-build-tools: Update download URL and home page URL.
* gnu/packages/lxqt.scm (lxqt-build-tools)
[source]: Update download URL to the 'lxqt' repository.
[home-page]: Use HTTPS.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:33:45 +08:00
Meiyo Peng 70c488f8dd
gnu: lxqt-session: Update to 0.13.0.
* gnu/packages/lxqt.scm (lxqt-session): Update to 0.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:29:55 +08:00
Nicolas Goaziou f0ac761f95
gnu: grammalecte: Update home page.
* gnu/packages/dictionaries.scm (grammalecte)[home-page]: Update URL.
2018-10-23 09:59:16 +02:00
Leo Famulari a89f731b15
gnu: Xiph: Use HTTPS URLs.
* gnu/packages/xiph.scm (libogg, libvorbis, libtheora, speex, speexdsp, ao,
flac, libkate, vorbis-tools, opus-tools opusfile, icecast, libshout)[source]:
Use HTTPS URLs.
(icecast)[home-page]: Use HTTPS URL.
2018-10-23 00:18:17 -04:00
Leo Famulari a640492f6d
gnu: Opus: Update to 1.3.
* gnu/packages/xiph.scm (opus): Update to 1.3.
2018-10-23 00:18:17 -04:00
Leo Famulari d0ff383ed8
gnu: opus-tools: Update to 0.2.
* gnu/packages/xiph.scm (opus-tools): Update to 0.2.
[native-inputs]: Add pkg-config.
[inputs]: Add libopusenc and opusfile. Remove libogg and opus.
2018-10-23 00:18:17 -04:00
Leo Famulari 844b3272da
gnu: opusfile: Propagate dependencies required in pkg-config.
* gnu/packages/xiph.scm (opusfile)[inputs]: Move libogg and openssl to
propagated-inputs.
2018-10-23 00:18:17 -04:00
Leo Famulari ce08d54c35
gnu: Add libopusenc.
* gnu/packages/xiph.scm (libopusenc): New variable.
2018-10-23 00:18:13 -04:00
Tobias Geerinckx-Rice d6a9c4ecfb
gnu: unbound: Update to 1.8.1.
* gnu/packages/dns.scm (unbound): Update to 1.8.1.
2018-10-23 04:18:50 +02:00
Tobias Geerinckx-Rice 661da25133
gnu: Remove duplicate import from (gnu packages messaging).
* gnu/packages/messaging.scm (define-module): Remove duplicate module
import.  Order the remainder alphabetically.
2018-10-23 04:18:40 +02:00
Tobias Geerinckx-Rice ee5c83533d
gnu: cppcheck: Update to 1.85.
* gnu/packages/check.scm (cppcheck): Update to 1.85.
2018-10-23 03:14:31 +02:00
Tobias Geerinckx-Rice 3891c38346
gnu: bs1770gain: Update to 0.5.1.
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.1.
2018-10-23 03:14:30 +02:00
Tobias Geerinckx-Rice 2820e31590
gnu: zstd: Update to 1.3.7.
* gnu/packages/compression.scm (zstd): Update to 1.3.7.
2018-10-23 03:14:30 +02:00
Marius Bakke 63abd1e2a3
gnu: python-pymongo: Update to 3.7.2.
* gnu/packages/python.scm (python-pymongo): Update to 3.7.2.
2018-10-22 23:01:19 +02:00
Marius Bakke 47d7c10387
gnu: python-sure: Update to 1.4.11.
* gnu/packages/python.scm (python-sure): Update to 1.4.11.
2018-10-22 23:01:19 +02:00
Marius Bakke 9b9aaa57e3
gnu: python-markdown: Update to 3.0.1.
* gnu/packages/python.scm (python-markdown): Update to 3.0.1.
[arguments]: Remove.
2018-10-22 23:01:19 +02:00
Marius Bakke 1b50df7d5b
gnu: python-markdown: Update home page.
* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
2018-10-22 23:01:19 +02:00
Marius Bakke cb61baf0e7
gnu: python-m2crypto: Update to 0.30.1.
* gnu/packages/python-crypto.scm (python-m2crypto): Update to 0.30.1.
2018-10-22 23:01:19 +02:00
Marius Bakke e810de3e68
gnu: python-m2crypto: python-typing is only needed for python2.
* gnu/packages/python-crypto.scm (python-m2crypto)[propagated-inputs]: Remove.
[properties]: New field.
(python2-m2crypto)[propagated-inputs]: Add PYTHON2-TYPING.
2018-10-22 23:01:19 +02:00
Marius Bakke 90fb136ff7
gnu: xorg-server: Update to 1.20.2.
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.2.
2018-10-22 23:01:19 +02:00
Marius Bakke 4350cacdf7
gnu: xf86-input-libinput: Update to 0.28.1.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.28.1.
2018-10-22 23:01:18 +02:00
Marius Bakke 3743e117a6
gnu: libmd: Update to 1.0.1.
* gnu/packages/crypto.scm (libmd): Update to 1.0.1.
2018-10-22 23:01:18 +02:00
Marius Bakke f38eedd518
gnu: samba: Update to 4.8.6.
* gnu/packages/samba.scm (samba): Update to 4.8.6.
2018-10-22 23:01:18 +02:00
Marius Bakke 3ad0a35890
gnu: Add GN.
* gnu/packages/build-tools.scm (gn): New public variable.
2018-10-22 23:01:18 +02:00
Marius Bakke f232c875d2
gnu: python-lazy-object-proxy: Update to 1.3.1.
* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
2018-10-22 23:01:18 +02:00
Marius Bakke b45688313b
gnu: python-mistune: Update to 0.8.4.
* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
2018-10-22 23:01:18 +02:00
Meiyo Peng 9861bcd182
gnu: liblxqt: Update to 0.13.0.
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Meiyo Peng 50401c2a68
gnu: libqtxdg: Update to 3.2.0.
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.2.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Christopher Lemmer Webber 51f4e36cb9
gnu: Add emacs-scribble-mode.
* gnu/packages/emacs.scm (emacs-scribble-mode): New variable.
2018-10-22 09:59:42 -04:00
Nicolas Goaziou 3a352a4405
gnu: snap: Update to 4.2.2.2.
* gnu/packages/education.scm (snap): Update to 4.2.2.2.  Update source URL.
2018-10-22 15:56:38 +02:00
Ricardo Wurmus 09aa3d063a
gnu: Add r-ruvseq.
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
2018-10-22 13:00:24 +02:00
Leo Famulari 318ec0a896
gnu: livemedia-utils: Update to 2018.10.17 [fixes CVE-2018-4013].
* gnu/packages/video.scm (livemedia-utils): Update to 2018.10.17.
2018-10-22 03:37:53 -04:00
Leo Famulari 69c69c2d8e
gnu: libmpdclient: Update to 2.16.
* gnu/packages/mpd.scm (libmpdclient): Update to 2.16.
2018-10-21 23:55:28 -04:00
Tobias Geerinckx-Rice dc3dfa131f
gnu: knot: Update to 2.7.3.
* gnu/packages/dns.scm (knot): Update to 2.7.3.
2018-10-22 00:40:05 +02:00
Leo Famulari df71447e99
gnu: OpenSSH: Update to 7.9p1.
* gnu/packages/ssh.scm (openssh): Update to 7.9p1.
2018-10-21 18:33:58 -04:00
Pierre Langlois ff598353c0
gnu: light: Update to 1.2.
* gnu/packages/linux.scm (light): Update to 1.2.
[source]: Switch to url-fetch.
[arguments]: Remove.
[native-inputs]: Remove help2man. Add autoconf and automake.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-21 23:54:46 +02:00
Luther Thompson 16d212510a
gnu: Add python-ilinkedlist.
* gnu/packages/python.scm (python-ilinkedlist): New variable.
2018-10-21 23:54:46 +02:00
Ludovic Courtès aff38cb199
install: Make /var/guix/…/guix-profile a relative symlink.
* gnu/build/install.scm (populate-single-profile-directory): Make
/var/guix/profiles/per-user/root/guix-profile a relative symlink.
2018-10-21 23:54:46 +02:00
Ricardo Wurmus f8ee22fc8b
gnu: flexbar: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (flexbar): Update to 3.4.0.
[source]: Fetch from git.
[arguments]: Adjust check and install phases.
[home-page]: Update to new home at Github.
[license]: Change to bsd-3.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4d93a9a36c
gnu: seqan: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (seqan): Update to 2.4.0.
[native-inputs]: Replace bzip2 with xz.
(seqan-1): New variable.
(tophat)[inputs]: Use seqan-1.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4b8f4536ce
gnu: khmer: Update to 2.1.2.
* gnu/packages/bioinformatics.scm (khmer): Update to 2.1.2.
[source]: Fetch from git; remove bundled libraries in snippet.
[arguments]: Remove "set-paths" phase; remove "post-install-check" phase;
remove "reset-gzip-timestamps" phase.
[native-inputs]: Remove seqan and python-nose; add python-cython,
python-pytest, and python-pytest-runner.
[inputs]: Remove gcc-4.9.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 50e33c3a8c
gnu: python-screed: Update to 1.0.
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 0db75f7a79
gnu: fasttree: Use INVOKE.
* gnu/packages/bioinformatics.scm (fasttree)[arguments]: Use INVOKE; simplify
install phase.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 38622ccd14
gnu: express-beta-diversity: Update to 1.0.8.
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus c96ca68f31
gnu: edirect: Update to 10.2.20181018.
* gnu/packages/bioinformatics.scm (edirect): Update to 10.2.20181018.
[arguments]: Add simple check phase; simplify other phases.
[inputs]: Add perl-xml-simple.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 949fa34b84
gnu: eigensoft: Update to 7.2.1.
* gnu/packages/bioinformatics.scm (eigensoft): Update to 7.2.1.
[arguments]: Remove Makefile modification.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 5748fe5fcc
gnu: discrover: Fetch from git.
* gnu/packages/bioinformatics.scm (discrover)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 4348a059e5
gnu: Add texlive-latex-examplep.
* gnu/packages/tex.scm (texlive-latex-examplep): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus f50f343e0d
gnu: Add texlive-latex-verbatimbox.
* gnu/packages/tex.scm (texlive-latex-verbatimbox): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 1d0669f4b4
gnu: Add texlive-latex-readarray.
* gnu/packages/tex.scm (texlive-latex-readarray): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 893fbf1285
gnu: Add texlive-generic-listofitems.
* gnu/packages/tex.scm (texlive-generic-listofitems): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 49b2e86adf
gnu: Add texlive-latex-doi.
* gnu/packages/tex.scm (texlive-latex-doi): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 1c06399358
gnu: diamond: Fetch from git.
* gnu/packages/bioinformatics.scm (diamond)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 7a1e62ca67
gnu: delly: Update to 0.7.9.
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 4d494a4fa3
gnu: deeptools: Update to 3.1.3.
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus e6b65bd219
gnu: eolie: Update to 0.9.45.
* gnu/packages/gnome.scm (eolie): Update to 0.9.45.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 42643fc24d
gnu: python-dendropy: Fetch from git.
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 6b31040ae6
gnu: python-py2bit: Update to 0.3.0.
* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.0.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 6b7260bad1
gnu: cutadapt: Update to 1.18.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.18.
[inputs]: Add python-dnaio.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus a5b0038cbd
gnu: Add python-dnaio.
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 7321920cd3
gnu: crossmap: Update to 0.2.9.
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 8640f9ec91
gnu: python-twobitreader: Update to 3.1.6.
* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.6.
[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus f5cec0068a
gnu: Add python-bx-python.
* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 2ba2d62c69
gnu: python2-bx-python: Update to 0.8.2.
* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 1d18ee6dfd
gnu: bwa-pssm: Fetch from git.
* gnu/packages/bioinformatics.scm (bwa-pssm)[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 9a6808e0c0
gnu: tophat: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Mark H Weaver f7618bf18e
gnu: linux-libre: Update to 4.18.16.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.16.
(%linux-libre-hash): Update hash.
2018-10-21 14:59:30 -04:00
Mark H Weaver 668834cae0
gnu: linux-libre@4.14: Update to 4.14.78.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.78.
(%linux-libre-4.14-hash): Update hash.
2018-10-21 14:58:03 -04:00
Mark H Weaver c4a7a51292
gnu: linux-libre@4.9: Update to 4.9.135.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.135.
2018-10-21 14:57:24 -04:00
Mark H Weaver 9ab6c680ba
gnu: linux-libre@4.4: Update to 4.4.162.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.162.
2018-10-21 14:56:44 -04:00
Pierre Neidhardt 673364cd3a
gnu: Add emacs-slime-repl-ansi-color.
* gnu/packages/emacs.scm (emacs-slime-repl-ansi-color): New variable.
2018-10-21 19:49:10 +02:00
Marius Bakke 3a69b59332
gnu: rng-tools: Update to 6.6.
* gnu/packages/linux.scm (rng-tools): Update to 6.6.
2018-10-21 17:57:01 +02:00
Marius Bakke 9b6dc31b6d
gnu: fluidsynth: Update to 2.0.1.
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.1.
(fluidsynth-1): New public variable.
* gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1.
* gnu/packages/music.scm (lmms)[inputs]: Likewise.
2018-10-21 17:57:01 +02:00
Marius Bakke b6b3e5120a
gnu: libgxps: Update to 0.3.0.
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-10-21 17:57:01 +02:00
Marius Bakke c8d62d936e
gnu: libgxps: Propagate required inputs.
* gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ...
[propagated-inputs]: ... here.  New field.
2018-10-21 17:57:01 +02:00
Marius Bakke 920de4286a
gnu: re2: Update to 2018-10-01.
* gnu/packages/regex.scm (re2): Update to 2018-10-01.
2018-10-21 17:57:01 +02:00
Marius Bakke ab5e4be647
gnu: libgphoto2: Update to 2.5.19.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
2018-10-21 17:57:01 +02:00
Marius Bakke 8941b4ab3d
gnu: appstream-glib: Update to 0.7.14.
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
2018-10-21 17:57:00 +02:00
Marius Bakke 8eadc55202
gnu: openal: Update to 1.19.1.
* gnu/packages/audio.scm (openal): Update to 1.19.1.
2018-10-21 17:57:00 +02:00
Efraim Flashner 2c17bd7b29
gnu: kodi: Disable version checker.
Fixes bug#32997.

* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove
the version checking configuration option.
2018-10-21 16:39:26 +03:00
Ben Woodcroft 617c478506
gnu: python2-dendropy: Disable failing test.
* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable
failing test.
2018-10-21 22:31:56 +10:00
Ricardo Wurmus 21c837405a
gnu: bowtie: Update to 2.3.4.3.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.4.3.
[source]: Fetch from git.
[inputs]: Replace python-2 with python-wrapper; move perl, perl-clone,
perl-test-deep, and perl-test-simple from here...
[native-inputs]: ...to here.
[arguments]: Simplify check phase.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus f45093429c
gnu: blast+: Use INVOKE and return #T unconditionally.
* gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and
return #T unconditionally.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus f8b697a385
gnu: bedops: Update to 2.4.35.
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35.
[source]: Fetch from git.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus 337d72fb44
gnu: bedops: Use INVOKE.
* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus c793f4d8fb
gnu: bamm: Fetch from git and use INVOKE.
* gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git.
[arguments]: Use INVOKE and return #T unconditionally.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus 95758e2faf
gnu: aragorn: Use invoke and simplify.
* gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build
phase; simplify install phase.
2018-10-20 23:37:33 +02:00
Ricardo Wurmus 8b4102b903
gnu: clipper: Update to 1.2.1.
* gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Add fix-typo phase.
2018-10-20 23:37:33 +02:00
Ricardo Wurmus 895cf8278a
gnu: python-pybedtools: Update to 0.7.10.
* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10.
[arguments]: Disable broken tests.
[propagated-inputs]: Replace bedtools with bedtools-2.26; add
python-matplotlib, python-pysam, and python-pyyaml.
[native-inputs]: Remove python-pyyaml; add kentutils, python-numpy,
python-pandas, and python-six.
(python-pybedtools): New variable.
2018-10-20 23:37:33 +02:00
Ricardo Wurmus 129363b762
gnu: Add bedtools-2.26.
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
2018-10-20 23:37:28 +02:00
Kei Kebreau bfa47f14b1
gnu: cataclysm-dda: Update snapshot.
* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
2018-10-20 14:38:45 -04:00
Kei Kebreau 82cbe4e046
gnu: maxima: Update to 5.42.0.
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
2018-10-20 14:38:45 -04:00
Oleg Pykhalov 227da3a4c5
gnu: python-glances: Update to 3.0.2.
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
2018-10-20 18:24:23 +03:00
Oleg Pykhalov 67fd64a490
gnu: emacs-hy-mode: Update to 1.0.3.
* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
2018-10-20 17:48:58 +03:00
Oleg Pykhalov e661dca879
gnu: emacs-erc-hl-nicks: Update to 1.3.3.
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
2018-10-20 17:48:49 +03:00
Oleg Pykhalov 91c5e6a69d
gnu: emacs-yasnippet: Update to 0.13.0.
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
2018-10-20 17:48:36 +03:00
Oleg Pykhalov 292d637b9e
gnu: emacs-nginx-mode: Update to 1.1.9.
* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
2018-10-20 17:48:28 +03:00
Oleg Pykhalov 2f1dacc281
gnu: emacs-rainbow-mode: Update to 1.0.1.
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
2018-10-20 17:48:07 +03:00
Oleg Pykhalov 45dcdf5349
gnu: emacs-smart-mode-line: Update to 2.12.0.
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
2018-10-20 17:47:46 +03:00
Oleg Pykhalov 9137596179
gnu: emacs-fill-column-indicator: Update to 1.89.
* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
2018-10-20 17:47:13 +03:00
Oleg Pykhalov 83246854f3
gnu: emacs-ggtags: Update to 0.8.13.
* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
2018-10-20 17:46:43 +03:00
Oleg Pykhalov 42f9ebdc77
gnu: emacs-which-key: Update to 3.3.0.
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
2018-10-20 17:37:32 +03:00
Christopher Baines 0d3f170864
gnu: Add soundconverter.
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-20 12:24:50 +01:00
nixo b5a927b3ba
gnu: Add enchive.
* gnu/packages/crypto.scm (enchive): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:41 +02:00
Ludovic Courtès 64791eb7e1
services: ntp: Document 'ntp-service-type' and 'ntp-configuration'.
* gnu/services/networking.scm (<ntp-configuration>)[servers]: Add
default value.
(ntp-service-type)[default-value]: New field.
(ntp-service): Mark as deprecated.
* gnu/services/desktop.scm (%desktop-services): Use (service
ntp-service-type) instead of calling 'ntp-service'.
* doc/guix.texi (Networking Services): Document 'ntp-service-type' and
'ntp-configuration'.
2018-10-19 23:39:41 +02:00
Meiyo Peng bc83b2e22f
gnu: Add i3blocks.
* gnu/packages/wm.scm (i3blocks): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:37 +02:00
Ricardo Wurmus cdb84eb0e6
gnu: qsynth: Update to 0.5.3.
* gnu/packages/audio.scm (qsynth): Update to 0.5.3.
2018-10-19 21:59:28 +02:00
Ludovic Courtès 0ee6692a63
gnu: sbcl-slime-swank: Remove reference to unbound variable.
Fixes a regression introduced in commit
c4d4ae1e16.

* gnu/packages/lisp.scm (sbcl-slime-swank)[license]: Remove extra 'license'.
2018-10-19 18:34:07 +02:00
Amirouche b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0.
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Amirouche 4680fef705
gnu: Add wiredtiger 3.1.0
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
  wiredtiger

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Pierre Neidhardt 3bd45f5c80
gnu: emacs-slime: License is a mix of GPL2+ and public domain.
* gnu/packages/emacs.scm (emacs-slime)[license]: Update to (gpl2+ public-domain)
2018-10-19 18:00:14 +02:00
Pierre Neidhardt e2e5004f6e
gnu: Add lparallel.
* gnu/packages/lisp.scm (cl-lparallel, ecl-lparallel, sbcl-lparallel): New variables.
2018-10-19 17:56:38 +02:00
Pierre Neidhardt 24fd7586a4
gnu: Add sbcl-cl-webkit.
* gnu/packages/lisp.scm (sbcl-cl-webkit): New variable.
2018-10-19 17:56:38 +02:00
Pierre Neidhardt c80dfee9f1
gnu: Add sbcl-cl-cffi-gtk.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19 17:56:38 +02:00
Pierre Neidhardt 7b5b8c4405
gnu: Add sbcl-cl-cffi-gtk-gdk.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt a3bdddc359
gnu: Add sbcl-cl-cffi-gtk-gdk-pixbuf.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk-pixbuf): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 9ecc457b52
gnu: Add sbcl-cl-cffi-gtk-pango.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-pango): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 7176fe7c32
gnu: Add sbcl-cl-cffi-gtk-cairo.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-cairo): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 867b3f4780
gnu: Add sbcl-cl-cffi-gtk-gio.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gio): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 77a5461c31
gnu: Add sbcl-cl-cffi-gtk-gobject.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gobject): New variable.
2018-10-19 17:56:37 +02:00