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Author SHA1 Message Date
Ben Woodcroft 5e7f1b0b2a gnu: ruby-nokogiri: Update to 1.6.7.2. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.6.7.2.
[arguments]: Relax 'mini_portile2' dependency.
 2016-05-25 22:34:29 +10:00
Mark H Weaver 2301195f2e
gnu: linux-libre: Update to 4.6. 
* gnu/packages/linux.scm (linux-libre): Update to 4.6.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: New files.
* gnu/packages/linux-libre-4.5-x86_64.conf,
gnu/packages/linux-libre-4.5-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
 2016-05-25 04:54:06 -04:00
Mark H Weaver 92a7e46d58
gnu: python-libxml2: Drop replacement from inherited libxml2. 
This is a followup to commit 493e9a5a8f.

* gnu/packages/xml.scm (python-libxml2)[replacement]: Set to #f, overriding
inherited value.
 2016-05-25 04:54:06 -04:00
Efraim Flashner 19d6248634
gnu: freeipmi: Update to 1.5.2. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.2.
 2016-05-25 09:13:13 +03:00
Mark H Weaver 796787a577
gnu: linux-libre-4.1: Update to 4.1.25. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.25.
 2016-05-25 00:26:40 -04:00
Mark H Weaver 6f82a7d40d
gnu: webkitgtk: Update to 2.12.3 [fixes CVE-2016-{1856,1857}]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.3.
 2016-05-25 00:14:32 -04:00
Ludovic Courtès 493e9a5a8f
gnu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705. 
* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
 2016-05-24 14:15:18 +02:00
humanitiesNerd 8eeb301de2
gnu: Add emacs-clojure-mode. 
* gnu/packages/emacs.scm (emacs-clojure-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-24 11:32:42 +03:00
Alex Kost b8fc362239
gnu: Use 'emacs-minimal' instead of 'emacs-no-x'. 
* gnu/packages/code.scm (cflow)[native-inputs]: Use 'emacs-minimal'
  instead of 'emacs-no-x'.
* gnu/packages/databases.scm (recutils): Likewise.
* gnu/packages/finance.scm (ledger): Likewise
* gnu/packages/idutils.scm (idutils): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/ocaml.scm (proof-general): Likewise.
* gnu/packages/package-management.scm (guix-0.10.0): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/scheme.scm (scmutils): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.
* gnu/packages/emacs.scm (geiser): Likewise.
(paredit): Likewise.
(git-modes): Likewise.
(magit): Likewise.
(magit-svn): Likewise.
(haskell-mode): Likewise.
(let-alist): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
(emms): Likewise.
(bbdb): Likewise.
(emacs-mmm-mode): Likewise.
(emacs-pdf-tools): Likewise.
(emacs-popup)[native-inputs]: Remove as it is not needed for
emacs-build-system.
(emacs-rfcview): Likewise.
(emacs-ffap-rfc-space): Likewise.
 2016-05-24 11:32:27 +03:00
Alex Kost 6aaf38992c
gnu: Move emacs for building from inputs to native-inputs. 
* gnu/packages/emacs.scm (geiser): Move "emacs" from inputs to native-inputs.
(paredit): Likewise.
(haskell-mode): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.
 2016-05-24 11:32:27 +03:00
Alex Kost a6eafbed66
build-system/emacs: Use 'emacs-minimal' by default. 
* guix/build-system/emacs.scm (default-emacs): Use 'emacs-minimal'.
* gnu/packages/emacs.scm (emacs-auctex): Use 'emacs'.
 2016-05-24 11:32:27 +03:00
Alex Kost b2eaf7bacd
gnu: Add emacs-minimal. 
* gnu/packages/emacs.scm (emacs-minimal): New variable.
 2016-05-24 11:32:27 +03:00
Alex Kost 486f36eb9e
gnu: emacs: Remove *.elc and autoloads from the tarball. 
* gnu/packages/emacs.scm (emacs)[source]: Add 'snippet' to remove
  compiled and generated elisp files.
 2016-05-24 11:11:26 +03:00
Efraim Flashner d16479c51e
gnu: enblend-enfuse: Update to 4.2. 
* gnu/packages/photo.scm (enblend-enfuse): Update to 4.2.
[native-inputs]: Add help2man, texlive-minimal.
 2016-05-24 08:49:23 +03:00
Leo Famulari 7febe3a282
gnu: grub: Re-enable test. 
* gnu/packages/grub.scm (grub)[arguments]: Re-enable test.
 2016-05-23 18:47:45 -04:00
Leo Famulari 88ac650c7b
gnu: vdirsyncer: Update to 0.11.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.0.
 2016-05-23 13:26:17 -04:00
Leo Famulari e1343994b0
gnu: git: Update to 2.8.3. 
* gnu/packages/version-control.scm (git): Update to 2.8.3.
(git-manpages)[source]: Update hash.
 2016-05-23 13:14:50 -04:00
Roel Janssen 031cf6b65e
gnu: Add r-zoo. 
* gnu/packages/statistics.scm (r-zoo): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-23 12:36:38 -04:00
Leo Famulari 148e8e8e75
gnu: borg: Update to 1.0.3. 
* gnu/packages/backup.scm (borg): Update to 1.0.3.
[source]: Remove pypi-uri.
 2016-05-23 12:27:12 -04:00
Ludovic Courtès 2cf0221f0e
gnu: pcre: Remove now-unneeded replacement. 
* gnu/packages/pcre.scm (pcre)[replacement]: Remove.
(pcre-fixed): Remove.
 2016-05-23 15:02:55 +02:00
Ludovic Courtès bc73a84398
Merge branch 'master' into core-updates 2016-05-23 15:02:26 +02:00
Roel Janssen f22debacb4
gnu: Add poppler-qt5. 
* gnu/packages/pdf.scm (poppler-qt5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-23 14:35:23 +03:00
Ricardo Wurmus 524eee0298 gnu: Add slurm-drmaa. 
* gnu/packages/parallel.scm (slurm-drmaa): New variable.
 2016-05-23 12:55:40 +02:00
Ricardo Wurmus 0783787436 gnu: Add ParDRe. 
* gnu/packages/bioinformatics.scm (pardre): New variable.
 2016-05-23 12:55:09 +02:00
Efraim Flashner 624d4e2e6b
gnu: gnu-pw-mgr: Update to 2.0. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
 2016-05-22 16:58:21 +03:00
Leo Famulari 13913c52d5
gnu: imagemagick: Update to 6.9.4-4. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
 2016-05-22 03:51:57 -04:00
Lukas Gradl 88bb4197c4 gnu: Add python2-rope. 
* gnu/packages/python.scm (python2-rope): New variable.
 2016-05-22 14:19:52 +10:00
Kei Yamashita 3c47489766
gnu: Add gnome-calendar. 
* gnu/packages/gnome.scm (gnome-calendar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Matthew Jordan 548994142f
gnu: Add envstore. 
* gnu/package/shellutils.scm: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Jan Nieuwenhuizen b9b447be64
gnu: Add sicp. 
* gnu/packages/scheme.scm (sicp): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Roel Janssen a56be436d0
gnu: Add dia. 
* gnu/packages/gnome.scm (dia): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Mark H Weaver 12b6f6527e
gnu: openssl: Remove workaround for GCC 4.9.3 (no longer used). 
* gnu/packages/tls.scm (openssl)[arguments]: In the 'configure' phase,
remove the workaround that passed "-mfpu=vfpv3" on armhf systems.
 2016-05-21 12:52:51 -04:00
Mark H Weaver 3c9a7185e4
gnu: linux-libre: Update to 4.5.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
 2016-05-20 18:58:15 -04:00
Mark H Weaver 4483a1185d
gnu: linux-libre-4.4: Update to 4.4.11. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
 2016-05-20 18:58:06 -04:00
Ricardo Wurmus 987a118334
gnu: Add default gcc-objc++. 
* gnu/packages/gcc.scm (gcc-objc++): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus a5948c0d41
gnu: Add gcc-objc++-4.9. 
* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus 8b196ad208
gnu: Add default gcc-objc. 
* gnu/packages/gcc.scm (gcc-objc): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus 2d69c1616d
gnu: Add gcc-objc-4.9. 
* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
 2016-05-20 15:19:33 +02:00
Ricardo Wurmus 813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 945eef85c5
gnu: armadillo: Update to 6.700.7. 
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 7740f58128
gnu: r-genomation: Update to 1.4.2. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus f6225d135c
gnu: r-jsonlite: Update to 0.9.20. 
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c969453e1c
gnu: r-plotly: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 95513f284f
gnu: r-matrixstats: Update to 0.50.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 2f7ac060ff
gnu: r-plotrix: Update to 3.6-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 133f27b06a
gnu: r-devtools: Update to 1.11.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 3624ad7150
gnu: r-git2r: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c1e2c9d41a
gnu: r-openssl: Update to 0.9.3. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 383f6337a0
gnu: r-testthat: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 1b206aeb00
gnu: r-knitr: Update to 1.13. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus d5130e6345
gnu: r-highr: Update to 0.6. 
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus df25b0048a
gnu: r-formatr: Update to 1.4. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 84e5368719
gnu: r-evaluate: Update to 0.9. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2. 
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus a76b3f6914
gnu: r-dbi: Update to 0.4-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 8ede249e0a
gnu: r-genomicfeatures: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 192e1ea8d1
gnu: r-summarizedexperiment: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus d7420566a9
gnu: r-biocparallel: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 73af676feb
gnu: r-annotationdbi: Update to 1.34.2. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 679e670b36
gnu: r-variantannotation: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 186ed87337
gnu: r-genomeinfodb: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
 2016-05-20 15:18:23 +02:00
Leo Famulari 0fc4a8afba
gnu: btrfs-progs: Update to 4.5.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3.
 2016-05-19 21:04:22 -04:00
Jelle Licht 0e40755d35
gnu: jemalloc: Update to 4.2.0. 
* gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-19 20:43:13 +03:00
Leo Famulari 119b83989d
gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283. 
* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
 2016-05-19 10:27:18 -04:00
Ludovic Courtès 9684e30b9b
gnu: flann: Do not install .a files. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
 2016-05-19 14:51:21 +02:00
Hartmut Goebel 458480235b
gnu: python: Add 'python' variables for different major/minor versions. 
* gnu/packages/python.scm (python-2): Rename variable to...
  (python-2.7): ...this.
  (python-2): Refer to "python-2.7".
  (python): Rename variable to...
  (python-3.4): ...this.
  (python-3): Refer to "python-3.4".
  (python): Refer to "python-3".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-19 14:51:21 +02:00
Ludovic Courtès 39b3033731
gnu: flann: Strip .mex file. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
 2016-05-19 14:51:21 +02:00
Ben Woodcroft 0947698c42 gnu: Add r-biased-urn. 
* gnu/packages/statistics.scm (r-biased-urn): New variable.
 2016-05-19 22:13:43 +10:00
Efraim Flashner 44c5f0258d
gnu: giflib: Use 'modify-phases'. 
* gnu/packages/image.scm (giflib)[arguments]: Use 'modify-phases'.
 2016-05-19 13:06:49 +03:00
Efraim Flashner 3fdb2a84be
gnu: giflib: Update to 5.1.4 [fixes CVE-2015-7555, CVE-2016-3977]. 
* gnu/packages/image.scm (giflib): Update to 5.1.4.
 2016-05-19 13:01:55 +03:00
humanitiesNerd 5c447e280e
gnu: Add emacs-smartparens. 
*  gnu/packages/emacs.scm (emacs-smartparens): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-19 11:45:15 +03:00
Kei Kebreau 21f05134fc
Update name for Kei Kebreau. 
* .mailmap: Add Kei Kebreau.
* gnu/local.mk: Replace "Kei Yamashita" with "Kei Kebreau".
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/dillo.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-19 11:42:03 +03:00
Kei Yamashita b7b27a8f28
gnu: octave: Update to 4.0.2. 
* gnu/packages/maths.scm (octave): Update to 4.0.2.
[inputs]: Added cyrus-sasl, openssl.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-19 04:32:23 +03:00
Ludovic Courtès 91231156ce
gnu: Add ntfs-3g. 
* gnu/packages/linux.scm (ntfs-3g): New variable.
 2016-05-18 23:41:03 +02:00
Kei Yamashita 64851f4a23
gnu: wmbattery: Fix UPower-related memory leak. 
* gnu/packages/gnustep.scm (wmbattery)[source](snippet): New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-18 23:41:03 +02:00
Efraim Flashner 65e46ca0ed
gnu: qtkeychain: Update to 0.6.2. 
* gnu/packages/qt.scm (qtkeychain): Update to 0.6.2.
 2016-05-18 18:06:47 +03:00
Ben Woodcroft bd9fe0f03b gnu: Add krona-tools. 
* gnu/packages/web.scm (krona-tools): New variable.
 2016-05-18 22:21:52 +10:00
Manolis Ragkousis 0affdfb805 gnu: hurd-headers: Update to 0.8. 
* gnu/packages/hurd.scm (hurd-headers): Update to version 0.8.
 2016-05-18 15:17:52 +03:00
Manolis Ragkousis eb3be3a791 gnu: mig: Update to 1.7. 
* gnu/packages/hurd.scm (mig): Update to version 1.7.
 2016-05-18 15:17:44 +03:00
Manolis Ragkousis 614f39271e gnu: gnumach-headers: Update to 1.7. 
* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.7.
 2016-05-18 15:17:38 +03:00
Ben Woodcroft 7c544991dc gnu: diamond: Do not specify target architecture. 
* gnu/packages/bioinformatics.scm (diamond)[arguments]: Do not
specify target architecture.
 2016-05-18 21:25:06 +10:00
Ricardo Wurmus e62ffce538 gnu: Add Piranha. 
* gnu/packages/bioinformatics.scm (piranha): New variable.
 2016-05-18 11:59:34 +02:00
Efraim Flashner dbd40ac19d
gnu: python2-pandas: Fix native-inputs. 
* gnu/packages/python.scm (python2-pandas)[native-inputs]: Use python2-
versions of python-panda's native-inputs, not of inputs.
 2016-05-18 10:52:41 +03:00
Leo Famulari f1876bfc7a
gnu: Add signify. 
* gnu/packages/crypto.scm (signify): New variable.
 2016-05-17 17:52:59 -04:00
Leo Famulari ad42be8388
gnu: libndp: Update to 1.6 [fixes CVE-2016-3698]. 
* gnu/packages/networking.scm (libndp): Update to 1.6.
 2016-05-17 14:31:09 -04:00
humanitiesNerd 9576cc72dc gnu: Add emacs-zenburn-theme. 
* gnu/packages/emacs.scm (emacs-zenburn-theme): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-17 21:06:36 +03:00
Leo Famulari fb2b0f5c87
gnu: gd: Fix-CVE-2016-3074. 
* gnu/packages/patches/gd-CVE-2016-3074.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
 2016-05-17 13:18:15 -04:00
Ludovic Courtès bbb5d8aeea
gnu: gd: Specify 'cpe-name'. 
* gnu/packages/gd.scm (gd)[properties]: New field.
 2016-05-17 18:15:59 +02:00
Ludovic Courtès 99effc8faa
lint: Honor 'cpe-name' and 'cpe-version' package properties. 
* guix/scripts/lint.scm (package-name->cpe-name): Remove.
(package-vulnerabilities): Honor 'cpe-name' and 'cpe-version'
properties.
* gnu/packages/grub.scm (grub)[properties]: New field.
* gnu/packages/gnuzilla.scm (icecat)[properties]: Add 'cpe-name' and
'cpe-version'.
* doc/guix.texi (Invoking guix lint): Mention 'cpe-name'.
 2016-05-17 18:15:53 +02:00
Efraim Flashner 45ff4b568d
gnu: sqlite: Update to 3.12.2. 
* gnu/packages/databases.scm (sqlite): Update to 3.12.2.
 2016-05-17 17:07:47 +03:00
Efraim Flashner c19700c396
gnu: gnutls: Update to 3.5.0. 
* gnu/packages/tls.scm (gnutls): Update to 3.5.0.
 2016-05-17 17:06:29 +03:00
Federico Beffa 1c29f3ef84 gnu: emacs-constants: Remove old patch. 
* gnu/packages/patches/emacs-constants-lisp-like.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove entry for above patch.
 2016-05-17 14:17:38 +02:00
Federico Beffa f99f3f24ef gnu: emacs-constants: Update to 2.6. 
* gnu/packages/emacs.scm (emacs-constants): Change to versioned repository and
  update to 2.6.
 2016-05-17 14:01:20 +02:00
Ben Woodcroft 849485f5a0 gnu: sortmerna: Update to 2.1b. 
* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1b.
[inputs]: New field.
 2016-05-17 21:45:49 +10:00
Ben Woodcroft daaeed765a gnu: vsearch: Update to 1.11.1. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.11.1.
 2016-05-17 21:36:46 +10:00
Ben Woodcroft 122395f9fc gnu: diamond: Update to 0.8.1. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
 2016-05-17 21:07:00 +10:00
Ludovic Courtès 74d637397b
gnu: tar: Update to 1.29. 
* gnu/packages/base.scm (tar): Update to 1.29.
[source]: Remove 'tar-d_ino_in_dirent-fix.patch'.
[arguments]: New field.
* gnu/packages/patches/tar-d_ino_in_dirent-fix.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-05-17 10:46:26 +02:00
Ludovic Courtès 2135d1eb3f
gnu: gdbm: Update to 1.12. 
* gnu/packages/databases.scm (gdbm): Update to 1.12.
 2016-05-17 09:45:06 +02:00
Ludovic Courtès a9e41d2faf
gnu: emacs-constants: Factorize home-page in source URL. 
* gnu/packages/emacs.scm (emacs-constants): Move 'home-page' above.  Use
it in 'uri'.
 2016-05-17 09:41:40 +02:00
Ludovic Courtès 4f04243405
gnu: 'uncompressed-file-fetch' no longer depends on gzip. 
* gnu/packages/emacs.scm (uncompressed-file-fetch): Remove dependency on
GZIP.
 2016-05-17 09:41:40 +02:00
Efraim Flashner cb307c0833
gnu: cflow: Update to 1.5. 
* gnu/packages/code.scm (cflow): Update to 1.5.
 2016-05-17 09:04:38 +03:00
Christopher Allan Webber 11e4c1fd10 gnu: Add geiser-next. 
Also, I previously committed to this repository in 2015; add self to copyright
headers for that year too.

* gnu/packages/emacs.scm (geiser-next): New variable.
 2016-05-16 14:48:57 -05:00
Ricardo Wurmus 96101b6718
gnu: r-zlibbioc: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.18.0.
 2016-05-16 20:59:50 +02:00
Ricardo Wurmus a0fe3aeecf
gnu: r-motifrg: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.16.0.
 2016-05-16 20:59:38 +02:00
Ricardo Wurmus 1f5786a918
gnu: r-seqlogo: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.38.0.
 2016-05-16 20:59:27 +02:00
Ricardo Wurmus 8adc3b628d
gnu: r-genomation: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.0.
 2016-05-16 20:59:14 +02:00
Ricardo Wurmus 7555817c2b
gnu: r-seqpattern: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.4.0.
 2016-05-16 20:59:04 +02:00
Ricardo Wurmus d1bff89d26
gnu: r-impute: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.46.0.
 2016-05-16 20:58:49 +02:00
Ricardo Wurmus 5190ed1751
gnu: r-bsgenome: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.0.
 2016-05-16 20:58:35 +02:00
Ricardo Wurmus e48e88c217
gnu: r-topgo: Update to 2.24.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.24.0.
[propagated-inputs]: Add r-matrixstats.
 2016-05-16 20:58:24 +02:00
Ricardo Wurmus 0c56023557
gnu: r-graph: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.50.0.
 2016-05-16 20:58:08 +02:00
Ricardo Wurmus c12b0a5a30
gnu: r-genomicfeatures: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.0.
 2016-05-16 20:57:55 +02:00
Ricardo Wurmus d23fbf1eb9
gnu: r-rtracklayer: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.0.
 2016-05-16 20:57:43 +02:00
Ricardo Wurmus 3cd551ea7b
gnu: r-genomicalignments: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.0.
 2016-05-16 20:57:30 +02:00
Ricardo Wurmus d848ed7cf2
gnu: r-summarizedexperiment: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.0.
 2016-05-16 20:57:21 +02:00
Ricardo Wurmus b4c5a0db22
gnu: r-rsamtools: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.24.0.
 2016-05-16 20:57:10 +02:00
Ricardo Wurmus 2477d9773a
gnu: r-biostrings: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.0.
 2016-05-16 20:56:58 +02:00
Ricardo Wurmus 6a2a0de1ab
gnu: r-biocparallel: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.0.
 2016-05-16 20:56:39 +02:00
Ricardo Wurmus 63cea37234
gnu: r-biomart: Update to 2.28.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.28.0.
 2016-05-16 20:56:29 +02:00
Ricardo Wurmus c4a4e17938
gnu: r-annotationdbi: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.0.
 2016-05-16 20:56:19 +02:00
Ricardo Wurmus 4466a02c9f
gnu: r-biobase: Update to 2.32.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.32.0.
 2016-05-16 20:56:09 +02:00
Ricardo Wurmus 828980cad6
gnu: r-genomicranges: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.0.
 2016-05-16 20:55:58 +02:00
Ricardo Wurmus e782ca3e97
gnu: r-xvector: Update to 0.12.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.0.
 2016-05-16 20:55:46 +02:00
Ricardo Wurmus 052ee32b24
gnu: r-variantannotation: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
  1.18.0.
 2016-05-16 20:55:32 +02:00
Ricardo Wurmus d1ab3d8fa5
gnu: r-genomeinfodb: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.0.
 2016-05-16 20:55:20 +02:00
Ricardo Wurmus 952ff8c862
gnu: r-iranges: Update to 2.6.0. 
* gnu/packages/bioinformatics (r-iranges): Update to 2.6.0.
 2016-05-16 20:55:11 +02:00
Ricardo Wurmus 3654a61146
gnu: r-s4vectors: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.0.
 2016-05-16 20:54:59 +02:00
Ricardo Wurmus a936bf59ea
gnu: r-dnacopy: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.46.0.
 2016-05-16 20:54:37 +02:00
Ricardo Wurmus dbfeba5209
gnu: r-biocgenerics: Update to 0.18.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.18.0.
 2016-05-16 20:53:48 +02:00
Leo Famulari ec0ea24d1a
gnu: openldap: Update to 2.4.44. 
* gnu/packages/openldap.scm (openldap): Update to 2.4.44.
[replacement]: Remove field.
(openldap-2.4.44): Remove variable.
 2016-05-16 14:53:06 -04:00
Leo Famulari dffded6211
gnu: libtasn1: Update to 4.8. 
* gnu/packages/tls.scm (libtasn1): Update to 4.8.
[replacement]: Remove field.
(libtasn1/fixed): Remove variable.
 2016-05-16 14:52:34 -04:00
Leo Famulari 1d30d554b5
gnu: openssl: Update to 1.0.2h. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2h.
[replacement]: Remove field.
(openssl/fixed): Remove variable.
 2016-05-16 14:52:34 -04:00
Leo Famulari af3ac1f5f7
gnu: imagemagick: Update to 6.9.4-1. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-1.
 2016-05-16 14:27:48 -04:00
Efraim Flashner b6c2f7dafd
gnu: libgit2: Update to 0.24.1. 
* gnu/packages/version-control.scm (libgit2): Update to 0.24.1.
 2016-05-16 19:34:49 +03:00
Efraim Flashner 8a0ac5bd55
gnu: tmux: Update to 2.2. 
* gnu/packages/tmux.scm (tmux): Update to 2.2.
 2016-05-16 19:34:49 +03:00
Alex Griffin d3699b311b gnu: Add ledger. 
* gnu/packages/finance.scm (ledger): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
 2016-05-16 18:01:18 +03:00
Alex Griffin f17a544756 gnu: Add utfcpp. 
* gnu/packages/textutils.scm (utfcpp): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-16 18:01:18 +03:00
Nicolas Goaziou 80ed14d38f gnu: asymptote: Install Emacs data. 
* gnu/packages/plotutils.scm (asymptote)[arguments]: Add a phase to
  install Emacs-Lisp files in an appropriate place.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-16 18:01:18 +03:00
Alex Kost 47c96a577d gnu: mu: Update to 0.9.16. 
* gnu/packages/mail.scm (%mu-gtester-patch): Remove.
(mu): Update to 0.9.16.
[source]: Remove 'patches'.
 2016-05-16 18:01:18 +03:00
Alex Kost 704f219668 gnu: mu: Install emacs autoloads. 
* gnu/packages/mail.scm (mu)[arguments]: Add 'install-emacs-autoloads'
  phase.  Use appropriate modules and imported-modules.
 2016-05-16 18:01:18 +03:00
Alex Kost 789bda83d2 gnu: mu: Install emacs files in a proper place. 
* gnu/packages/mail.scm (mu)[arguments]: Add 'patch-configure.ac' phase
  to avoid adding "mu4e" sub-directory to 'lispdir' variable.
 2016-05-16 18:01:18 +03:00
Alex Kost 99404fff9f gnu: mu: Use 'modify-phases'. 
* gnu/packages/mail.scm (mu): Use 'modify-phases'.
 2016-05-16 18:01:18 +03:00
Efraim Flashner 7d0c3c8d01
gnu: python-pandas: Update to 0.18.1. 
* gnu/packages/python.scm (python-pandas): Update to 0.18.1.
[native-inputs]: Remove python-setuptools.
[properties]: Define python2-pandas.
(python2-pandas)[native-inputs]: Add python2-setuptools.
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 17:39:42 +03:00
Ricardo Wurmus 8226c2717c gnu:: java-swt: Use ant-build-system. 
* gnu/packages/java.scm (java-swt): Use ant-build-system.
[native-inputs]: Remove JDK.
 2016-05-16 16:17:18 +02:00
Ricardo Wurmus 81b98756a3 gnu: Add SBC. 
* gnu/packages/linux.scm (sbc): New variable.
 2016-05-16 16:16:21 +02:00
Ricardo Wurmus 002528bca5 gnu: rapicorn: Fix tests. 
* gnu/packages/graphics.scm (rapicorn)[arguments]: Add build phases
"fix-tests" and "pre-check".  Generalize "replace-/bin/ls" phase to
"replace-fhs-paths".
[propagated-inputs]: Add python2-enum34.
[native-inputs]: Add xorg-server.
 2016-05-16 16:16:15 +02:00
Federico Beffa 549f951283 gnu: Add Chez-Scheme. 
* gnu/packages/scheme.scm (chez-scheme): New variable.
 2016-05-16 14:28:25 +02:00
Federico Beffa 9f9861d7e5 gnu: netpbm: Return #t from custom phases. 
* gnu/packages/netpbm.scm (netpbm)[arguments]: Do it.
 2016-05-16 14:26:27 +02:00
Federico Beffa 2492581f0c gnu: netpbm: Fix location of X color name database. 
* gnu/packages/netpbm.scm (netpbm)[inputs]: Add 'xorg-rgb'.
  [arguments]: In the 'configure' phase, patch 'pm_config.in.h' with the full
  path to the 'rgb.txt' file.
 2016-05-16 14:23:46 +02:00
Federico Beffa 1de1c56db7 gnu: netpbm: Use 'modify-phases' syntax. 
* gnu/packages/netpbm.scm (netpbm)[arguments]: Do it.
 2016-05-16 14:23:30 +02:00
Federico Beffa 5fdd142072 gnu: Add the X color name database file. 
* gnu/packages/xorg.scm (xorg-rgb): New variable.
 2016-05-16 14:23:17 +02:00
Efraim Flashner 44877dcc66
gnu: hugs: Update urls. 
* gnu/packages/hugs.scm (hugs)[source]: Update url.
[home-page]: Use https.
 2016-05-16 14:47:59 +03:00
Efraim Flashner a83e604662
gnu: hmmer: Update urls. 
* gnu/packages/bioinformatics.scm (hmmer)[source]: Project has moved to
eddylab, with their downloads.
[home-page]: Update to new homepage.
 2016-05-16 14:28:53 +03:00
Efraim Flashner d03f944614
gnu: guile-irregex: Update to 0.9.4. 
* gnu/packages/guile.scm (guile-irregex): Update to 0.9.4.
 2016-05-16 14:18:21 +03:00
Efraim Flashner 3a66217ff2
gnu: gkrellm: Update urls. 
* gnu/packages/gkrellm.scm (gkrellm)[source]: Download from new site.
[home-page]: Update to new site.
 2016-05-16 14:12:54 +03:00
Efraim Flashner bf512da1e4
gnu: giblib: Add mirror for source. 
* gnu/packages/image.scm (giblib)[source]: Add a download mirror from
slackbuilds.
 2016-05-16 14:07:47 +03:00
Efraim Flashner 284539ce86
gnu: geeqie: Update source location. 
* gnu/packages/geeqie.scm (geeqie)[source]: Download from Github.
[home-page]: Project has moved to new url.
 2016-05-16 12:59:40 +03:00
Efraim Flashner fd02719c7b
gnu: fvwm: Update to 2.6.6. 
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.6.
[source]: Change download location to Github.
 2016-05-16 12:31:25 +03:00
Efraim Flashner 66395a6157
gnu: gmsh: Add missing inputs. 
* gnu/packages/maths.scm (gmsh)[inputs]: Add fontconfig, libxft.
 2016-05-16 10:18:43 +03:00
Leo Famulari b4370be9de
gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.2. 
* gnu/packages/python.scm (python-cryptography): Update to 1.3.2.
(python-cryptography-vectors): Update to 1.3.2.
 2016-05-16 02:13:18 -04:00
Efraim Flashner 3fef0a2fa1
gnu: unixodbc: Update to 2.3.4. 
* gnu/packages/databases.scm (unixodbc): Update to 2.3.4.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 6747a852c5
gnu: tdb: Update to 1.3.9. 
* gnu/packages/databases.scm (tdb): Update to 1.3.9.
 2016-05-16 06:10:06 +03:00
Efraim Flashner ec374039e4
gnu: postgresql: Update to 9.5.3. 
* gnu/packages/databases.scm (postgresql): Update to 9.5.3.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 9a12ca7771
gnu: wireless-regdb: Update to 2016.05.02. 
* gnu/packages/linux.scm (wireless-regdb): Update to 2016.05.02.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 2f9e312a39
gnu: iw: Update to 4.3. 
* gnu/packages/linux.scm (iw): Update to 4.3.
[source]: Use kernel mirror.
[home-page]: Update to new home-page.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 30897c60a4
gnu: mdadm: Update to 3.4. 
* gnu/packages/linux.scm (mdadm): Update to 3.4.
[source]: Remove patch.
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 06:10:06 +03:00
Efraim Flashner e9eb24b1b2
gnu: bluez: Update to 5.39. 
* gnu/packages/linux.scm (bluez): Update to 5.39.
[source]: Use kernel mirror.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 2b193389d2
gnu: libical: Update to 2.0.0. 
* gnu/packages/calendar.scm (libical): Update to 2.0.0.
[arguments]: Add configure-flag to add "/lib64" to the rpath.
 2016-05-16 06:10:06 +03:00
Efraim Flashner a2ccaa0d79
gnu: qemu: Update to 2.6.0. 
* gnu/packages/qemu.scm (qemu): Update to 2.6.0.
[arguments]: Re-enable parallel tests.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 1fb8e074f1
gnu: libqmi: Update to 1.14.2. 
* gnu/packages/freedesktop.scm (libqmi): Update to 1.14.2.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 66056126ea
gnu: libmbim: Update to 1.12.4. 
* gnu/packages/freedesktop.scm (libmbim): Update to 1.12.4.
[home-page]: Use https.
 2016-05-16 06:10:06 +03:00
Kei Yamashita 9c0c77f833
gnu: Add gtkspell3. 
* gnu/packages/gtk.scm (gtkspell3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-16 06:10:06 +03:00
Efraim Flashner 5c6fdaa9e1
gnu: exempi: Update to 2.3.0. 
* gnu/packages/freedesktop.scm (exempi): Update to 2.3.0.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 3f61f926b9
gnu: libinput: Update to 1.3.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.3.0.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 90cd0e138d
gnu: owncloud-client: Update to 2.2.0. 
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.0.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 74dd0e4831
gnu: libidn: Update license. 
* gnu/packages/libidn.scm (libidn)[license]: Change the license to
gpl2+ gpl3+ lgpl3+ fdl1.3+.
 2016-05-16 06:10:06 +03:00
Leo Famulari b7ab191ddd
gnu: Add libbsd. 
* gnu/packages/libbsd.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-05-15 22:05:44 -04:00
David Thompson d8f3795622 gnu: minetest: Update to 0.4.14. 
* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.14.
 2016-05-15 18:33:36 -04:00
Jan Nieuwenhuizen 9365ee1c46
gnu: Add gnome-tweak-tool. 
* gnu/packages/patches/gnome-tweak-tool-search-paths.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-tweak-tool): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-15 13:03:15 -04:00
Jan Nieuwenhuizen 277a7d82b8
gnu: libnotify: Add dependency on gobject-introspection. 
* gnu/packages/gnome.scm (libnotify)[native-inputs]: Add
gobject-introspection.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-15 13:03:00 -04:00
Jan Nieuwenhuizen 0158ca7fdd
gnu: cross-base: Add srfi-26 for glibc. 
Fixes a regression introduced in
commit efc4eb1475.

* gnu/packages/cross-base.scm (cross-libc)[arguments]: Add (srfi
srfi-26).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-15 17:59:33 +03:00
宋文武 e91fd7f591 gnu: love: Update to 0.10.1. 
* gnu/packages/game-development.scm (love): Update to 0.10.1.
 2016-05-15 18:24:15 +08:00
宋文武 e6a905070a gnu: wxmaxima: Update to 16.04.2. 
* gnu/packages/maths.scm (wxmaxima): Update to 16.04.2.
 2016-05-15 15:49:35 +08:00
Efraim Flashner 5c1c2254cb
gnu: libva: Update to 1.7.0. 
* gnu/packages/video.scm (libva): Update to 1.7.0.
[home-page]: Use https.
 2016-05-15 10:15:59 +03:00
Efraim Flashner 18e681bf6c
gnu: bdb: Update to 6.2.23. 
* gnu/packages/databases.scm (bdb): Update to 6.2.23.
 2016-05-15 10:14:42 +03:00
Efraim Flashner ac52b72d1e
gnu: kmod: Update to 22. 
* gnu/packages/linux.scm (kmod): Update to 22.
 2016-05-15 10:14:42 +03:00
Jan Nieuwenhuizen 8a7680a759
gnu: cross-base: Add srfi-26 for glibc. 
Fixes a regression introduced in
commit efc4eb1475.

* gnu/packages/cross-base.scm (cross-libc)[arguments]: Add (srfi
srfi-26).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-14 22:01:27 +02:00
Ludovic Courtès 52e1defe02
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to e9017c9.
Use http URL.
 2016-05-14 15:50:25 +02:00
Ludovic Courtès 6d461b21f0
gnu: git: Fix search path specification for 'GIT_SSL_CAINFO'. 
Reported by ng0 <ng0@n0.is>.

* gnu/packages/version-control.scm (git)[native-search-paths]: Add
'file-type'.
 2016-05-14 10:32:50 +02:00
Leo Famulari 247783685b
gnu: certbot: Update home page URL. 
This is a followup to commit 9495cf9a80.

* gnu/packages/tls.scm (certbot)[home-page]: Update to new location.
 2016-05-14 01:37:11 -04:00
Leo Famulari 9495cf9a80
gnu: Rename letsencrypt to certbot. Upgrade certbot and python-acme to 0.6.0. 
* gnu/packages/tls.scm (letsencrypt): Rename to...
(certbot): ... this.
(letsencrypt): Inherit from certbot.
[source]: Update to 0.6.0
[arguments]: Adjust paths.
(python-acme, python2-acme): Update to 0.6.0.
 2016-05-14 01:18:28 -04:00
Leo Famulari 4fa05a8198
gnu: libarchive: Update to 3.2.0. 
* gnu/packages/patches/libarchive-CVE-2013-0211.patch,
gnu/packages/patches/libarchive-CVE-2016-1541.patch,
gnu/packages/patches/libarchive-bsdtar-test.patch,
gnu/packages/patches/libarchive-fix-lzo-test-case.patch,
gnu/packages/patches/libarchive-mtree-filename-length-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/backup.scm (libarchive): Update to 3.2.0.
[source]: Remove deleted patches.
[replacement]: Remove.
(libarchive/fixed): Remove variable.
 2016-05-13 02:23:38 -04:00
Leo Famulari eb74eb4199
Merge branch 'master' into core-updates 2016-05-13 02:08:11 -04:00
Mark H Weaver e9017c98d6
gnu: jemalloc: No longer build with gcc-4.8 on i686. 
* gnu/packages/jemalloc.scm (jemalloc)[native-inputs]: Remove field.
 2016-05-13 01:18:42 -04:00
Mark H Weaver 99828fa788
gnu: Update module imports for asciidoc and doxygen. 
This is a followup to commit 0573a923de.

* gnu/packages/algebra.scm, gnu/packages/bioinformatics.scm,
gnu/packages/fcitx.scm, gnu/packages/fish.scm,
gnu/packages/freedesktop.scm, gnu/packages/game-development.scm,
gnu/packages/gcc.scm, gnu/packages/graphics.scm, gnu/packages/image.scm,
gnu/packages/kodi.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/messaging.scm,
gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/rdf.scm,
gnu/packages/serialization.scm, gnu/packages/version-control.scm,
gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xiph.scm: Change imports of (gnu packages asciidoc) or
(gnu packages doxygen) to (gnu packages documentation).
 2016-05-12 20:18:15 -04:00
Mark H Weaver 207c604637
Merge branch 'gnome-updates' 2016-05-12 18:48:36 -04:00
Mark H Weaver 11d7d7b5d3
gnu: linux-libre: Update to 4.5.4. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.4.
 2016-05-12 18:43:06 -04:00
Mark H Weaver a23dc63bed
gnu: linux-libre-4.4: Update to 4.4.10. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.10.
 2016-05-12 18:42:57 -04:00
Mark H Weaver fffa338439
gnu: linux-libre-4.1: Update to 4.1.24. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.24.
 2016-05-12 18:42:42 -04:00
Mark H Weaver ef06d54a9b
gnu: icecat: Update to 38.8.0-gnu1. 
* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch,
gnu/packages/patches/icecat-update-bundled-graphite2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.8.0-gnu1.
[source] Remove deleted patches.
 2016-05-12 18:15:07 -04:00
Eric Bavier 889187a464 gnu: Add NetCDF. 
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): New variables.
 2016-05-12 19:59:53 +00:00
Eric Bavier 6c90e183cf gnu: Add Matio. 
* gnu/packages/maths.scm (matio): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier 00775104ee gnu: Add h5check. 
* gnu/packages/maths.scm (h5check): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier c8378eea10 gnu: Add hdf5-openmpi. 
* gnu/packages/maths.scm (hdf5-openmpi): New variable.
 2016-05-12 19:59:52 +00:00
Eric Bavier b8d9c93bde gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH. 
* gnu/packages/patches/hdf5-config-date.patch: New patch.
* gnu/packages/maths.scm (hdf5)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-05-12 19:59:52 +00:00
Eric Bavier f622e2123b gnu: hdf5: Patch output references to zlib. 
* gnu/packages/maths.scm (hdf5)[arguments]: Use modify-phases.  Add
'patch-references' phase.
 2016-05-12 19:59:52 +00:00
Eric Bavier 04b7a7cd10 gnu: hdf5: Update to 1.8.17. 
* gnu/packages/maths.scm (hdf5): Update to 1.8.17.
 2016-05-12 19:59:52 +00:00
Eric Bavier 528bb46436 gnu: Add HYPRE. 
* gnu/packages/maths.scm (hypre, hypre-openmpi): New variables.
* gnu/packages/patches/hypre-doc-tables.patch,
gnu/packages/patches/hypre-ldflags.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Eric Bavier b4e655e5f1 gnu: Add doc++. 
* gnu/packages/documentation.scm (doc++): New variable.
* gnu/packages/patches/doc++-include-directives.patch,
  gnu/packages/patches/doc++-segfault-fix.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-05-12 19:59:52 +00:00
Eric Bavier 0573a923de gnu: Move asciidoc and doxygen to new module. 
* gnu/packages/asciidoc.scm (asciidoc): Move this...
* gnu/packages/doxygen.scm (doxygen): ...and this...
* gnu/packages/documentation.scm: ...to here.  New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add accordingly.
 2016-05-12 19:04:31 +00:00
Eric Bavier f6292baf92 gnu: claws-mail: Add shared-mime-info input. 
* gnu/packages/mail.scm (claws-mail)[inputs]: Add shared-mime-info.
[arguments]: Add 'patch-mime' phase.
 2016-05-12 01:09:22 -05:00
Efraim Flashner dbffd7d775
gnu: nmap: Update to 7.12. 
* gnu/packages/admin.scm (nmap): Update to 7.12.
 2016-05-12 08:51:10 +03:00
Efraim Flashner 7e19194d07
gnu: tinc: Update to 1.0.28. 2016-05-12 06:59:49 +03:00
Efraim Flashner a8cdc49e59
gnu: openvpn: Update to 2.3.9. 
* gnu/packages/vpn.scm (openvpn): Update to 2.3.9.
 2016-05-12 06:52:18 +03:00
Leo Famulari e7806e6caa
gnu: libarchive: Fix CVE-2016-1541. 
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive/fixed): New variable.
* gnu/packages/patches/libarchive-CVE-2016-1541.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-11 21:35:35 -04:00
宋文武 de1d68a295 gnu: aseprite: Fix build. 
* gnu/packages/game-development.scm (aseprite)[arguments]: Remove #:phases.
 2016-05-12 09:28:14 +08:00
Mark H Weaver 9f5e796753
Merge branch 'master' into gnome-updates 2016-05-11 13:37:47 -04:00
Danny Milosavljevic cf60e76a95
gnu: libxkbcommon: Move to (gnu packages xdisorg). 
* gnu/packages/qt.scm (libxkbcommon): Move to...
* gnu/packages/xdisorg.scm (libxkbcommon): ... here.  New variable.
* gnu/packages/wm.scm, gnu/packages/gnome.scm,
gnu/packages/games.scm: Adjust accordingly.
 2016-05-11 18:29:39 +02:00
Matthew Jordan 5d38aa0826
gnu: Add entr. 
* gnu/packages/entr.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-11 18:16:11 +02:00
Nicolas Goaziou 75e56aedf0
gnu: thinkfan: Fix daemon path in init scripts. 
* gnu/packages/linux.scm (thinkfan): Fix daemon path in init scripts.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-11 17:56:27 +02:00
Mark H Weaver e2b89203db
gnu: totem: Fix build on i686. 
* gnu/packages/patches/totem-debug-format-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (totem)[source]: Add patch.
 2016-05-11 10:22:00 -04:00
Roel Janssen 93d2456cfc
gnu: graphviz: Build the Guile bindings. 
* gnu/packages/graphviz.scm (graphviz)[inputs]: Add SWIG and GUILE-2.0.
[arguments]: Add 'move-guile-bindings' phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-11 15:58:24 +02:00
Kei Yamashita 22c161d0a8
gnu: libical: Correct zoneinfo search path. 
* gnu/packages/calendar.scm (libical)[arguments]: substitute FHS-compliant
zoneinfo folders with location of tzdata's zoneinfo folder.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-11 15:46:42 +02:00
Leo Famulari f10e7ef475
gnu: libgpg-error: Update to 1.22. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.22.
 2016-05-10 17:51:02 -04:00
Leo Famulari 424fbe807f
gnu: libksba: Upsate to 1.3.4. 
* gnu/packages/gnupg.scm (libksba): Update to 1.3.4.
 2016-05-10 17:48:57 -04:00
Leo Famulari cf316a5938
gnu: exim: Update to 4.87. 
* gnu/packages/mail.scm (exim): Update to 4.87.
 2016-05-10 16:44:41 -04:00
Ludovic Courtès 216c283b0a
gnu: python: Make sure shared libraries are stripped. 
* gnu/packages/python.scm (python-2)[arguments]: Add
'make-libraries-writable' phase.
 2016-05-10 16:50:46 +02:00
Ludovic Courtès 9ffe61b0ee
gnu: python: Remove unnecessary installed tests. 
* gnu/packages/python.scm (python-2)[arguments]: Add 'remove-tests'
phase.
 2016-05-10 16:50:46 +02:00
Ludovic Courtès a8938c8858
gnu: poppler: Do not build static libraries. 
* gnu/packages/pdf.scm (poppler)[arguments]: Pass "--disable-static".
 2016-05-10 16:50:46 +02:00
Manolis Ragkousis 55de892b43 gnu: glibc: Rename linux-headers input to kernel-headers. 
* gnu/packages/base.scm (glibc)[propagated-inputs]: Use a kernel
  agnostic name for the kernel headers.
  [arguments]: Adjust accordingly.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)
  [propagated-inputs]: Adjust accordingly.
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Adjust
  accordingly.
  (cross-gcc)[native-inputs]: Adjust accordingly.
* gnu/packages/make-bootstrap.scm (%glibc-stripped)[arguments]: Adjust
  accordingly.
  [inputs]: Adjust accordingly.
 2016-05-10 14:39:50 +03:00
Efraim Flashner 26fceae21a
Revert "gnu: libva: Update to 1.7.0." 
This reverts commit cdda334ec2.
 2016-05-10 11:48:12 +03:00
Leo Famulari b6449e6126
gnu: qemu: Update to 2.5.1.1 [fixes CVE-2015-8558, CVE-2016-{3710, 3712}]. 
* gnu/packages/qemu.scm (qemu): Update to 2.5.1.1.
[arguments]: Disable parallel tests.
 2016-05-10 03:34:51 -04:00
Efraim Flashner fa37f21bda
gnu: guile-ncurses: Use 'modify-phases'. 
* gnu/packages/guile.scm (guile-ncurses)[arguments]: Use 'modify-phases'.
 2016-05-10 07:41:27 +03:00
Efraim Flashner 4176eb1918
gnu: guile-ncurses: Update to 1.7. 
* gnu/packages/guile.scm (guile-ncurses): Update to 1.7.
[arguments]: Remove work-around for buggy test.

commit fixes http://bugs.gnu.org/21677
 2016-05-10 07:40:33 +03:00
Efraim Flashner cc6561e6a1
gnu: qemu: Update to 2.5.1. 
* gnu/packages/qemu.scm (qemu): Update to 2.5.1.
[source]: Remove patches.
* gnu/packages/patches/qemu-usb-ehci-oob-read.patch,
gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch,
gnu/packages/patches/qemu-CVE-2015-8558.patch,
gnu/packages/patches/qemu-CVE-2015-8567.patch,
gnu/packages/patches/qemu-CVE-2015-8613.patch,
gnu/packages/patches/qemu-CVE-2015-8619.patch,
gnu/packages/patches/qemu-CVE-2015-8701.patch,
gnu/packages/patches/qemu-CVE-2015-8743.patch,
gnu/packages/patches/qemu-CVE-2016-1568.patch,
gnu/packages/patches/qemu-CVE-2016-1922.patch,
gnu/packages/patches/qemu-CVE-2016-1981.patch,
gnu/packages/patches/qemu-CVE-2016-2197.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-05-09 20:43:35 +03:00
Efraim Flashner f2bca8db37
gnu: connman: Fix url. 
* gnu/packages/connman.scm (connman)[source]: Remove extra "/pub" from
the download url.
 2016-05-09 17:02:51 +03:00
Ludovic Courtès 6ea06a0e3a
gnu: cups-minimal: Use 'modify-phases'. 
* gnu/packages/cups.scm (cups-minimal)[arguments]: Use 'modify-phases'.
 2016-05-09 15:55:44 +02:00
Ludovic Courtès eb354bdacb
gnu: ghostscript: Do not build the statically-linked 'gs' binary. 
* gnu/packages/ghostscript.scm (ghostscript)[arguments]: Remove
'build-so' and 'install-so' phases.  Replace 'build' and 'install'
phases.
 2016-05-09 15:54:34 +02:00
Ludovic Courtès 958d25ad2a
gnu: ghostscript: Disallow references to "doc". 
* gnu/packages/ghostscript.scm (ghostscript)[arguments]: Add
  #:disallowed-references.
 2016-05-09 15:52:18 +02:00
Ludovic Courtès 0e50d521c9
gnu: bdb: Do not build static libraries. 
* gnu/packages/databases.scm (bdb)[arguments]: Pass --disable-static.
 2016-05-09 15:51:38 +02:00
Ludovic Courtès ff1f39e3a0
gnu: bdb: Disallow references to "doc" output. 
* gnu/packages/databases.scm (bdb)[arguments]: Add #:disallowed-references.
 2016-05-09 15:51:04 +02:00
Efraim Flashner ac10a81ad4
gnu: openntpd: Update to 5.9p1. 
* gnu/packages/ntp.scm (openntpd): Update to 5.9p1.
 2016-05-09 14:43:52 +03:00
Efraim Flashner e20a94aa88
gnu: youtube-dl: Update to 2016.05.01. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.05.01.
 2016-05-09 13:49:49 +03:00
Efraim Flashner 702bfbf1ee
gnu: ffmpeg: Update to 3.0.2. 
* gnu/packages/video.scm (ffmpeg): Update to 3.0.2.
[home-page]: Use https.
 2016-05-09 13:43:46 +03:00
Efraim Flashner cdda334ec2
gnu: libva: Update to 1.7.0. 
* gnu/packages/video.scm (libva): Update to 1.7.0.
[home-page]: Use https.
 2016-05-09 13:43:46 +03:00
Al McElrath 4acbd20621 gnu: Add surf. 
* gnu/packages/suckless.scm (surf): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-05-09 18:11:56 +08:00
Kei Yamashita 9c6b7ef54f gnu: Add wmfire. 
* gnu/packages/gnustep.scm (wmfire): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-09 11:41:00 +03:00
Efraim Flashner 4c7729dc56
gnu: mlt: Update to 6.2.0. 
* gnu/packages/video.scm (mlt): Update to 6.2.0.
[source]: Download from github.
[inputs]: Add pulseaudio.
 2016-05-09 02:26:12 +03:00
Efraim Flashner 1d4ac724b8
gnu: v4l-utils: Update to 1.10.0. 
* gnu/packages/video.scm (v4l-utils): Update to 1.10.0.
[source]: Use https.
 2016-05-09 02:10:32 +03:00
Efraim Flashner 6cd6d1ad5e
gnu: obs: Update to 0.14.1. 
* gnu/packages/video.scm (obs): Update to 0.14.1.
 2016-05-08 23:51:42 +03:00
David Thompson 738fea3086
gnu: tiled: Update to 0.16.1. 
* gnu/packages/game-development.scm (tiled): Update to 0.16.1.
 2016-05-08 12:36:12 -04:00
宋文武 4e823eae64 gnu: gnome-klotski: Fix build. 
* gnu/packages/gnome.scm (gnome-klotski)[inputs]: Add libgames-support.
 2016-05-08 23:00:37 +08:00
宋文武 f09520db01 gnu: Add libgames-support. 
* gnu/packages/gnome.scm (libgames-support): New variable.
 2016-05-08 23:00:12 +08:00
宋文武 041d0ff880 gnu: poppler: Update to 0.43.0. 
* gnu/packages/pdf.scm (poppler): Update to 0.43.0.
 2016-05-08 21:20:55 +08:00
宋文武 6655a74326 Merge branch 'master' into gnome-updates 2016-05-08 17:54:46 +08:00
Roel Janssen 2d4422d5b5
gnu: Add bash-tap. 
* gnu/packages/bash.scm (bash-tap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-07 14:53:38 -04:00
Roel Janssen b5f13fdb96
gnu: Add r-mvtnorm. 
* gnu/packages/statistics.scm (r-mvtnorm): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-07 14:16:18 -04:00
Nicolas Goaziou d17ae8c0c3
gnu: Add thinkfan. 
* gnu/packages/linux.scm (thinkfan): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-06 22:46:59 -04:00
Kei Yamashita 13416a10af
gnu: Add moc. 
* gnu/packages/music.scm (moc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-06 19:38:50 -04:00
Leo Famulari bdb2d56ee7
gnu: mutt: Update to 1.6.1. 
* gnu/packages/mail.scm (mutt): Update to 1.6.1.
 2016-05-06 17:01:35 -04:00
Leo Famulari 70dced54ed
gnu: msmtp: Update to 1.6.4. 
* gnu/packages/mail.scm (msmtp): Update to 1.6.4.
 2016-05-06 16:46:35 -04:00
Alex Griffin aa206271cf
gnu: wesnoth: Update to 1.12.5. 
* gnu/packages/games.scm (wesnoth): Update to 1.12.5.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-06 15:46:54 -04:00
Mark H Weaver 9fab793729
gnu: bind-utils: Update to 9.10.4. 
* gnu/packages/dns.scm (bind-utils): Update to 9.10.4.
 2016-05-06 15:38:25 -04:00
Mark H Weaver ef3b904770
gnu: isc-dhcp: Update to 4.3.4 [with mitigation for CVE-2016-2774]. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.4.  Update
bundled 'bind' to 9.9.9.
 2016-05-06 15:38:12 -04:00
Leo Famulari 04d1a0dc0c
gnu: nginx: Update to 1.10.0. 
* gnu/packages/web.scm (nginx): Update to 1.10.0.
 2016-05-06 14:13:59 -04:00
David Thompson 218a21069a
gnu: redis: Update to 3.2.0. 2016-05-06 09:11:34 -04:00
Ricardo Wurmus e42eb908f6 gnu: r: Update to 3.3.0. 
* gnu/packages/statistics.scm (r): Update to 3.3.0.
[inputs]: Add curl and tzdata.
[arguments]: Set TZDIR in "set-timezone" phase.
 2016-05-06 14:58:19 +02:00
Al McElrath 766a22fb4d
gnu: i3status: Update to 2.10. 
Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-06 01:38:27 -04:00
Leo Famulari fdad1f3c42
gnu: i3status: Use https URLs. 
* gnu/packages/wm.scm (i3status)[source]: Use https URL.
[home-page]: Use https URL.
 2016-05-06 01:35:07 -04:00
Leo Famulari 8658d40350
gnu: i3-wm: Use https URLs. 
* gnu/packages/wm.scm (i3-wm)[source]: Use https URL.
[home-page]: Use https URL.
 2016-05-06 01:29:56 -04:00
Roel Janssen 52ad9cb60e
gnu: Add r-estimability. 
* gnu/packages/statistics.scm (r-estimability): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:42:36 -04:00
Roel Janssen 82047474ea
gnu: Add r-coda. 
* gnu/packages/statistics.scm (r-coda): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:23:48 -04:00
Leo Famulari 478e75b53b
gnu: wrap-python3: Create more symlinks. 
Suggested by Hartmut Goebel <h.goebel@crazy-compilers.com>.

* gnu/packages/python.scm (wrap-python3): Add symlinks for 'pip' and
'python-config'.
 2016-05-05 16:30:10 -04:00
Efraim Flashner 9478c9d834
gnu: Add connman. 
* gnu/packages/connman.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-05-05 23:07:09 +03:00
Leo Famulari ddba00cdf0
gnu: ntp: Update to 4.2.8p7 [security fixes]. 
This fixes CVE-2015-7704 and CVE-2016-{1547,1548,1549,1551,2516,2517,
2518,2519}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8.p7.
 2016-05-05 16:05:04 -04:00
Efraim Flashner 9c61acf2c1 gnu: mercurial: Update to 3.8.1 [fixes CVE-2016-3105]. 
* gnu/packages/version-control.scm (mercurial): Update to 3.8.1.
 2016-05-05 19:43:29 +03:00
Jan Nieuwenhuizen 7309045cd3
gnu: Add libiconv. 
* gnu/packages/base.scm (libiconv): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-05 16:55:14 +02:00
Mark H Weaver c041dcd133
gnu: linux-libre: Update to 4.5.3. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.3.
 2016-05-05 08:48:07 -04:00
Mark H Weaver a6b3c07a7a
gnu: linux-libre-4.4: Update to 4.4.9. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.9.
 2016-05-05 08:44:52 -04:00
Mark H Weaver a82f322b1c
gnu: linux-libre-4.1: Update to 4.1.23. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.23.
 2016-05-05 07:56:37 -04:00
Leo Famulari 1a957c21c6
gnu: libressl: Update to 2.3.4 [security fixes]. 
Fixes CVE-2016-{2105, 2106, 2107, 2108, 2109}.

* gnu/packages/tls.scm (libressl): Update to 2.3.4.
 2016-05-05 02:16:17 -04:00
Ludovic Courtès b13cf17fcf
gnu: java-qdox: Escape "@" in description. 
* gnu/packages/java.scm (java-qdox-1.12)[description]: Use "@@tag", not
"@tag".
 2016-05-04 23:35:55 +02:00
Ludovic Courtès 958dd3ce68
utils: Move combinators to (guix combinators). 
* guix/utils.scm (compile-time-value, memoize, fold2)
(fold-tree, fold-tree-leaves): Move to...
* guix/combinators: ... here.  New file.
* tests/utils.scm ("fold2, 1 list", "fold2, 2 lists")
(fold-tree tests): Move to...
* tests/combinators.scm: ... here.  New file.
* Makefile.am (MODULES, SCM_TESTS): Add them.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
gnu/services/herd.scm, guix/build-system/gnu.scm,
guix/build-system/python.scm, guix/derivations.scm,
guix/gnu-maintenance.scm, guix/import/elpa.scm,
guix/scripts/archive.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/scripts/size.scm, guix/scripts/substitute.scm,
guix/serialization.scm, guix/store.scm, guix/ui.scm: Adjust imports
accordingly.
 2016-05-04 23:35:55 +02:00
Alex Kost af5640d1dd gnu: tvtime: Update to 1.0.10. 
* gnu/packages/tv.scm (tvtime): Update to 1.0.10.
[source]: Remove patches.
[inputs]: Add 'alsa-lib'.
* gnu/packages/patches/tvtime-gcc41.patch,
gnu/packages/patches/tvtime-pngoutput.patch,
gnu/packages/patches/tvtime-videodev2.patch,
gnu/packages/patches/tvtime-xmltv.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-05-04 23:08:39 +03:00
Alex Kost 41447b3199 gnu: libcue: Update to 2.1.0. 
* gnu/packages/cdrom.scm (libcue): Update to 2.1.0.
[build-system]: Use 'cmake-build-system' (the upstream moved to it).
[native-inputs]: Add 'bison' and 'flex'.
 2016-05-04 23:08:39 +03:00
Efraim Flashner 8c3e9a6a8d
gnu: gnupg: Update to 2.1.12. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.12.
[source]: Remove patch.
* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-04 22:20:45 +03:00
Jelle Licht cbb6239bed
gnu: jemalloc: Update to 4.1.0. 
* gnu/packages/jemalloc.scm (jemalloc): Upodate to 4.1.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-04 21:47:04 +03:00
Mark H Weaver 8c15e084fe gnu: imlib2: Update to 1.4.9 [fixes CVE-2011-5326, CVE-2016-{3993,3994}]. 
* gnu/packages/image.scm (imlib2): Update to 1.4.9.
[source]: Remove patch.
* gnu/packages/patches/imlib2-CVE-2016-4024.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-04 13:51:48 -04:00
David Thompson d663e5e600
gnu: imagemagick: Update to 6.9.3-10. 
Fixes CVE-2016–3714.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.3-10.
[source]: Remove patch.
* gnu/packages/patches/imagemagick-test-segv.patch: Delete.
* gnu/local.mk (dist_patch_DATA): Remove patch file from distribution.
 2016-05-04 13:22:52 -04:00
Mark H Weaver 4e9d04a80b Merge branch 'master' into gnome-updates 2016-05-04 11:43:50 -04:00
Andy Wingo 11057c4b58 gnu: bitlbee: Incorporate upstream pre-release patches. 
* gnu/packages/messaging.scm (%bitlbee-buddy-nick-change-patch):
(%bitlbee-always-use-nicks-patch): New variables.
(bitlbee): Add new patches.
 2016-05-04 17:00:02 +02:00
Andy Wingo ac47ad99a4 gnu: bitlbee: Update to 3.4.2. 
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.2.
 2016-05-04 17:00:02 +02:00
Ricardo Wurmus 83b84fa812 gnu: edirect: Update to 4.10. 
* gnu/packages/bioinformatics.scm (edirect): Update to 4.10.
 2016-05-04 16:45:43 +02:00
Manolis Ragkousis d46123aade gnu: procps: Make procps build on non Linux systems. 
* gnu/packages/patches/procps-non-linux.patch.patch: New patch.
* gnu/packages/linux.scm (procps)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-04 17:18:57 +03:00
Efraim Flashner 54df75582f
gnu: Add pinentry-qt. 
* gnu/packages/gnupg.scm (pinentry-qt): New variable.
 2016-05-04 12:57:23 +03:00
Efraim Flashner c607b7011c
gnu: Add pinentry-tty. 
* gnu/packages/gnupg.scm (pinentry-tty): New variable.
[arguments]: Add pinentry-tty flag.
(pinentry-gtk2): Inherit from pinentry-tty.
[inputs]: Use gtk+-2, glib for pinentry-gtk2 only.
[description]: Modify description based on inputs.
 2016-05-04 12:57:23 +03:00
Efraim Flashner 940f8d39a5
gnu: pinentry: Rename to pinentry-gtk2. 
* gnu/packages/gnupg.scm (pinentry): Rename to pinentry-gtk2.
Define pinentry as pinentry-gtk2.
 2016-05-04 12:57:23 +03:00
Ludovic Courtès 0a0884c991
gnu: cross: Fix typo. 
* gnu/packages/cross-base.scm (cross-gcc-arguments): Remove erroneous
'else' introduced in efc4eb1475.
 2016-05-03 23:43:49 +02:00
Roel Janssen 1b39a196f8
gnu: Add nlopt. 
* gnu/packages/maths.scm (nlopt): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 21:57:05 +02:00
Andreas Enge 5ef819cc01 gnu: redeclipse: Rename to red-eclipse. 
* gnu/packages/games.scm (redeclipse): Rename to...
(red-eclipse): ...this.

This is a follow-up to commit 5b8a85431d,
which changed only the name field of the package.
 2016-05-03 21:25:31 +02:00
Kei Yamashita 5b8a85431d gnu: Rename redeclipse package to red-eclipse. 
* gnu/packages/games.scm (redeclipse): Rename to...
(red-eclipse): ...this.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-05-03 19:48:15 +02:00
Mark H Weaver 3c1d2981ff gnu: openssl: Replace with 1.0.2h [security fixes]. 
Fixes CVE-2016-{2105,2106,2107,2109,2176}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl/fixed): New variable.
 2016-05-03 13:31:50 -04:00
Ludovic Courtès e760ec4187
gnu: gcc: Add 6.1.0. 
* gnu/packages/gcc.scm (gcc-6): New variable.
* gnu/packages/commencement.scm (gcc-toolchain-6): New variable.
 2016-05-03 17:45:29 +02:00
Jan Nieuwenhuizen efc4eb1475
gnu: cross: Use CROSS_*_INCLUDE_PATH for system headers. 
* gnu/packages/patches/gcc-cross-environment-variables.patch: Also use CROSS_
variants: CROSS_C_INCLUDE_PATH, CROSS_CPLUS_INCLUDE_PATH,
CROSS_OBJC_INCLUDE_PATH, CROSS_OBJCPLUS_INCLUDE_PATH to be used for system
libraries, see
https://lists.gnu.org/archive/html/guix-devel/2016-04/msg00620.html.
* gnu/packages/cross-base.scm (cross-gcc, cross-gcc-arguments, cross-libc):
Use CROSS_*_INCLUDE_PATH (WAS: CPATH).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-03 17:45:29 +02:00
Mark H Weaver 0a17fd7c0b gnu: wpa-supplicant: Add fixes for CVE-2016-{4476,4477}. 
* gnu/packages/patches/wpa-supplicant-CVE-2016-4476.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt1.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt2.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt3.patch,
gnu/packages/patches/wpa-supplicant-CVE-2016-4477-pt4.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Add patches.
 2016-05-03 09:39:59 -04:00
Roel Janssen 4c6aa73b8f
gnu: Add 4store. 
* gnu/packages/databases.scm (4store): New variable.
* gnu/packages/patches/4store-fix-buildsystem.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-02 14:45:57 -04:00
Leo Famulari 3854f3d7e4
gnu: ocaml: Fix CVE-2015-8869. 
* gnu/packages/patches/ocaml-CVE-2015-8869.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ocaml.scm (ocaml): Use it.
 2016-05-02 14:30:49 -04:00
Ricardo Wurmus 73124d3422 gnu: bristol: Do not check for JACK with ldd. 
* gnu/packages/music.scm (bristol)[arguments]: Add build phase to
  disable runtime check for JACK.
 2016-05-02 20:02:20 +02:00
Ricardo Wurmus 6855b34754 gnu: frescobaldi: Add MIDI support. 
* gnu/packages/music.scm (frescobaldi)[inputs]: Add portmidi and
  python-pyportmidi.
 2016-05-02 20:02:20 +02:00
Ricardo Wurmus f65d59fc8e gnu: Add python-pyportmidi. 
* gnu/packages/music.scm (python-pyportmidi): New variable.
 2016-05-02 20:02:20 +02:00
Ricardo Wurmus aacb52fb0f gnu: Add portmidi. 
* gnu/packages/music.scm (portmidi): New variable.
* gnu/packages/patches/portmidi-modular-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-05-02 20:02:20 +02:00
Mathieu Lirzin 62063d8546 gnu: Add reposurgeon. 
* gnu/packages/version-control.scm (reposurgeon): New variable.
 2016-05-02 17:58:23 +02:00
Mathieu Lirzin 4c48bf5502 gnu: powertop: Patch absolute file names. 
* gnu/packages/linux.scm (powertop)[inputs]: Add kmod.
[arguments]: Patch absolute file names.
 2016-05-02 17:58:23 +02:00
Ludovic Courtès b5e0c870cb
gnu: guile: Do not build static libraries. 
* gnu/packages/guile.scm (guile-2.0)[arguments]: Add #:configure-flags.
 2016-05-02 17:58:21 +02:00
Ludovic Courtès a909b57658
gnu: openssl: Add "doc" output. 
* gnu/packages/tls.scm (openssl)[outputs]: Add "doc".
[arguments]: Add 'move-man3-pages' phase.
 2016-05-02 17:58:17 +02:00
Ludovic Courtès 8c78aeb724
gnu: openssl: Move static libraries to "static" output. 
* gnu/packages/tls.scm (openssl)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
 2016-05-02 17:58:02 +02:00
Ludovic Courtès d03781c3bc
gnu: openssl: Disallow references to Perl. 
* gnu/packages/tls.scm (openssl)[arguments]: Add #:disallowed-references.
 2016-05-02 17:57:59 +02:00
Ludovic Courtès 503409b543
gnu: qpdf: Remove run-time dependency on Perl. 
* gnu/packages/pdf.scm (qpdf)[source](snippet): New field.
[arguments]: Add #:disallowed-references.
[inputs]: Move PERL to...
[native-inputs]: ... here.
 2016-05-02 17:57:55 +02:00
Ludovic Courtès 6d49ca3bad
gnu: pcre: Add "bin" output. 
* gnu/packages/pcre.scm (pcre)[outputs]: Add "bin".
 2016-05-02 17:57:51 +02:00
Mathieu Lirzin c74c7c1317 gnu: libxslt: Make generated documentation reproducible. 
* gnu/packages/patches/libxslt-generated-ids.patch: New file.
* gnu/packages/patches/libxslt-remove-date-timestamps.patch: Likewise.
* gnu/packages/xml.scm (libxslt)[source]: Use them.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-02 17:54:01 +02:00
Mathieu Lirzin c3052d6bcd Merge branch 'master' into core-updates 2016-05-02 17:53:40 +02:00
Ricardo Wurmus d0184f44d3 gnu: Add java-junit. 
* gnu/packages/java.scm (java-junit): New variable.
 2016-05-02 17:35:51 +02:00
Ricardo Wurmus 87c31a21a5 gnu: Add java-hamcrest-core. 
* gnu/packages/java.scm (java-hamcrest-core): New variable.
 2016-05-02 17:35:51 +02:00
Ricardo Wurmus e7e28510bb gnu: Add java-jarjar. 
* gnu/packages/java.scm (java-jarjar): New variable.
 2016-05-02 17:35:50 +02:00
Ricardo Wurmus 04100c3bbb gnu: Add java-qdox-1.12. 
* gnu/packages/java.scm (java-qdox-1.12): New variable.
 2016-05-02 17:35:50 +02:00
宋文武 ad1b7d8baf gnu: yelp: Add gsettings-desktop-schemas to inputs. 
* gnu/packages/gnome.scm (yelp)[inputs]: Add gsettings-desktop-schemas.
 2016-05-02 22:06:47 +08:00
宋文武 0510440b4e gnu: gom: Update to 0.3.2. 
* gnu/packages/gnome.scm (gom): Update to 0.3.2.
 2016-05-02 22:06:47 +08:00
宋文武 7236045314 gnu: gnome: Add desktop-file-utils. 
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add desktop-file-utils.
 2016-05-02 22:06:46 +08:00
宋文武 616fc48f26 gnu: gst-plugins-good: Disable a failing rtprtx test. 
* gnu/packages/gstreamer.scm (gst-plugins-good)[arguments]: Disable
'test_rtxreceive_data_reconstruction'.
 2016-05-02 22:06:46 +08:00
宋文武 fc185ca65b gnu: udisks: Update to 2.1.7. 
* gnu/packages/freedesktop.scm (udisks): Update to 2.1.7.
 2016-05-02 22:06:46 +08:00
宋文武 05f651c4e9 gnu: gnome: Add baobab, gnome-backgrounds and gvfs. 
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add baobab, gnome-backgrounds
and gvfs.
 2016-05-02 22:06:46 +08:00
宋文武 a829a053e2 gnu: nautilus: Update to 3.20.1. 
* gnu/packages/gnome.scm (nautilus): Update to 3.20.1.
 2016-05-02 22:06:45 +08:00
宋文武 924ae80f3d gnu: grilo-plugins: Update to 0.3.1. 
* gnu/packages/gnome.scm (grilo-plugins): Update to 0.3.1.
[inputs]: Add nettle.
 2016-05-02 22:06:45 +08:00
宋文武 5ed159c5e4 gnu: grilo: Update to 0.3.0. 
* gnu/packages/gnome.scm (grilo): Update to 0.3.0.
 2016-05-02 22:06:45 +08:00
宋文武 afc25242a1 gnu: gedit: Enable Python Console plugin. 
* gnu/packages/gnome.scm (gedit)[arguments]: Wrap with PYTHONPATH.
 2016-05-02 22:06:45 +08:00
宋文武 2ed6522ac3 gnu: libpeas: Add inputs. 
* gnu/packages/gnome.scm (libpeas)[inputs]: Add glade, libxml2, python
and python-pygobject.
 2016-05-02 22:06:45 +08:00
宋文武 142bdcbc04 gnu: network-manager: Update to 1.2.0. 
* gnu/packages/gnome.scm (network-manager): Update to 1.2.0.
[inputs]: Add modem-manager.
 2016-05-02 22:06:45 +08:00
宋文武 f3045a5ba3 gnu: librsvg: Drop 'loaders.cache' file. 
This is a followup to 05c4b7e93.

* gnu/packages/gnome.scm (librsvg)[arguments]: Don't install 'loaders.cache' file.
* gnu/packages/gnome.scm (gnome-themes-standard),
  gnu/packages/key-mon.scm (keymon),
  gnu/packages/music.scm (solfege): Remove wrap phase for SVG support.
 2016-05-02 22:06:45 +08:00
宋文武 0ddba70707 gnu: dconf-editor: Update to 3.20.1. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.20.1.
 2016-05-02 22:06:44 +08:00
宋文武 758da0fe8e gnu: baobab: Update to 3.20.1. 
* gnu/packages/gnome.scm (baobab): Update to 3.20.1.
 2016-05-02 22:06:44 +08:00
宋文武 82ab76474d gnu: gnome-shell: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.20.1.
 2016-05-02 22:06:44 +08:00
宋文武 8b6b7c7361 gnu: gnome-control-center: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.20.1.
 2016-05-02 22:06:44 +08:00
宋文武 906943dfd3 gnu: gdm: Update to 3.20.1. 
* gnu/packages/gnome.scm (gdm): Update to 3.20.1.
 2016-05-02 22:06:44 +08:00
宋文武 bbbb77e400 gnu: network-manager-applet: Update to 1.2.0. 
* gnu/packages/gnome.scm (network-manager-applet): Update to 1.2.0.
 2016-05-02 22:06:44 +08:00
宋文武 c1387d3689 gnu: evolution-data-server: Update to 3.20.1, fix build. 
* gnu/packages/gnome.scm (evlution-data-server): Update to 3.20.1.
[arguments]: Pass '--disable-google-auth' to configure.
 2016-05-02 22:06:44 +08:00
宋文武 223f5d5d0f gnu: gnome-online-accounts: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.20.1.
 2016-05-02 22:06:43 +08:00
宋文武 4a8573ad62 gnu: mutter: Update to 3.20.1. 
* gnu/packages/gnome.scm (mutter): Update to 3.20.1.
 2016-05-02 22:06:43 +08:00
宋文武 803ab4164d gnu: gnome-session: Update to 3.20.1, fix build. 
* gnu/packages/gnome.scm (gnome-session): Update to 3.20.1.
[arguments]: Remove use of systemd in 'gsm-autostart-app.c.'.
 2016-05-02 22:06:43 +08:00
宋文武 74cf8f6cf9 gnu: file-roller: Update to 3.20.1. 
* gnu/packages/gnome.scm (file-roller): Update to 3.20.1.
 2016-05-02 22:06:43 +08:00
宋文武 f8b446caa9 gnu: shotwell: Update to 0.22.1. 
* gnu/packages/gnome.scm (shotwell): Update to 0.22.1.
 2016-05-02 22:06:43 +08:00
宋文武 b8967d4861 gnu: yelp: Update to 3.20.1. 
* gnu/packages/gnome.scm (yelp): Update to 3.20.1.
 2016-05-02 22:06:43 +08:00
宋文武 27ad574333 gnu: yelp-xsl: Update to 3.20.1. 
* gnu/packages/gnome.scm (yelp-xsl): Update to 3.20.1.
 2016-05-02 22:06:43 +08:00
宋文武 c51555f414 gnu: epiphany: Update to 3.20.1. 
* gnu/packages/gnome.scm (epiphany): Update to 3.20.1.
 2016-05-02 22:06:42 +08:00
宋文武 ddfa9131b8 gnu: gvfs: Update to 1.28.1. 
* gnu/packages/gnome.scm (gvfs): Update to 1.28.1.
 2016-05-02 22:06:42 +08:00
宋文武 3afeb02c51 gnu: eog: Update to 3.20.1. 
* gnu/packages/gnome.scm (eog): Update to 3.20.1.
 2016-05-02 22:06:42 +08:00
宋文武 88e88997e5 gnu: totem: Update to 3.20.1. 
* gnu/packages/gnome.scm (totem): Update to 3.20.1.
 2016-05-02 22:06:42 +08:00
宋文武 41150c7d8a gnu: gnome-klotski: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.20.1.
 2016-05-02 22:06:42 +08:00
宋文武 35907ce11c gnu: gnome-settings-daemon: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-settings-daemon): Update to 3.20.1.
 2016-05-02 22:06:42 +08:00
宋文武 3ffd46bdaf gnu: geocode-glib: Update to 3.20.1. 
* gnu/packages/gnome.scm (geocode-glib): Update to 3.20.1.
 2016-05-02 22:06:41 +08:00
宋文武 e3cf0c71f1 gnu: gnome-terminal: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.20.1.
 2016-05-02 22:06:41 +08:00
宋文武 319549c242 gnu: gnome-sudoku: Update to 3.20.0. 
* gnu/packages/gnome.scm (gnome-sudoku): Update to 3.20.0.
 2016-05-02 22:06:41 +08:00
宋文武 a28bf6b4fe gnu: libsoup: Update to 2.54.1. 
* gnu/packages/gnome.scm (libsoup): Update to 2.54.1.
 2016-05-02 22:06:41 +08:00
宋文武 90000d4b94 gnu: rest: Update to 0.8.0. 
* gnu/packages/gnome.scm (rest): Update to 0.8.0.
 2016-05-02 22:06:41 +08:00
宋文武 7958a55d6f gnu: glib-networking: Update to 2.48.1. 
* gnu/packages/gnome.scm (glib-networking): Update to 2.48.1.
 2016-05-02 22:06:41 +08:00
宋文武 b8f551d91f gnu: vte: Update to 0.44.1. 
* gnu/packages/gnome.scm (vte): Update to 0.44.1.
 2016-05-02 22:06:41 +08:00
宋文武 ab740c7f2e gnu: gnome-desktop: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-desktop): Update to 3.20.1.
 2016-05-02 22:06:40 +08:00
宋文武 3f57959caa gnu: gtkmm: Update to 3.20.1. 
* gnu/packages/gtk.scm (gtkmm): Update to 3.20.1.
 2016-05-02 22:06:40 +08:00
宋文武 96e889b031 gnu: gtksourceview: Update to 3.20.2. 
* gnu/packages/gtk.scm (gtksourceview): Update to 3.20.2.
 2016-05-02 22:06:40 +08:00
宋文武 ccce435a93 gnu: gtk+: Update to 3.20.3. 
* gnu/packages/gtk.scm (gtk+): Update to 3.20.3.
 2016-05-02 22:06:40 +08:00
宋文武 f507609eac gnu: at-spi2-atk: Update to 2.20.1. 
* gnu/packages/gtk.scm (at-spi2-atk): Update to 2.20.1.
 2016-05-02 22:06:40 +08:00
宋文武 b67e35e21b gnu: at-spi2-core: Update to 2.20.1. 
* gnu/packages/gtk.scm (at-spi2-core): Update to 2.20.1.
 2016-05-02 22:06:40 +08:00
宋文武 d998508227 gnu: pango: Update to 1.40.1. 
* gnu/packages/gtk.scm (pango): Update to 1.40.1.
 2016-05-02 22:06:40 +08:00
Ludovic Courtès ba470833c2 gnu: gtkmm: Run Xvfb for tests. 
* gnu/packages/gtk.scm (gtkmm)[arguments]: New field.
 2016-05-02 22:06:39 +08:00
宋文武 33cd9bef2c gnu: gedit: Fix build by passing '--disable-spell'. 
* gnu/packages/gnome.scm (gedit)[arguments]: Pass '--disable-spell' to configure.
 2016-05-02 22:06:39 +08:00
宋文武 ba666b07ea Revert "Revert "gnu: gjs: Skip test_utf8_inout test."" 
This reverts commit c4eefd63fa.
 2016-05-02 22:06:39 +08:00
宋文武 54e911bcc2 Revert "Revert "gnu: geoclue: Update to 2.4.3."" 
This reverts commit e4a7039e46.
 2016-05-02 22:06:39 +08:00
宋文武 8e3593353e Revert "Revert "gnu: inkscape: Fix build with glibmm-2.48."" 
This reverts commit 267061ba0b.
 2016-05-02 22:06:39 +08:00
宋文武 6983ba5660 Revert "Revert "Merge branch 'gnome-updates'"" 
This reverts commit e969b140a4.
 2016-05-02 22:06:36 +08:00
Ricardo Wurmus 8563258337 gnu: Add r-xnomial. 
* gnu/packages/statistics.scm (r-xnomial): New variable.
 2016-05-02 22:05:54 +08:00
Ben Woodcroft 555f3586ed gnu: ruby-hashery: Update to 2.1.2. 
* gnu/packages/ruby.scm (ruby-hashery): Update to 2.1.2.
[arguments]: Remove test workaround.
 2016-05-02 22:05:54 +08:00
Nicolas Goaziou d20708b6c5 gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-02 22:05:54 +08:00
Danny Milosavljevic 7d5920638a gnu: Add python2-shedskin. 
* gnu/packages/python.scm (python2-shedskin): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-02 22:05:53 +08:00
Ricardo Wurmus 35518b7545 gnu: guitarix: Update to 0.35.0. 
* gnu/packages/audio.scm (guitarix): Update to 0.35.0.
 2016-05-02 22:05:53 +08:00
Ricardo Wurmus 457b5eb6d2 gnu: qtractor: Update to 0.7.7. 
* gnu/packages/music.scm (qtractor): Update to 0.7.7.
 2016-05-02 22:05:53 +08:00
Ricardo Wurmus f03781417b gnu: Add antiword. 
* gnu/packages/textutils.scm (antiword): New variable.
 2016-05-02 22:05:53 +08:00
Ricardo Wurmus b095e76270 gnu: Add synthv1. 
* gnu/packages/music.scm (synthv1): New variable.
 2016-05-02 22:05:53 +08:00
John Darrington 8b463616f9 gnu: ao: Replace "itemize" with "enumerate" in description string. 
* gnu/packages/xiph.scm (ao): Replace "itemize" with "enumerate" in description string.
  Apparently Guile cannot yet handle "itemize" when creating HTML.
 2016-05-02 22:05:53 +08:00
John Darrington 0b63b1625e gnu: ao: Format the description string. 
* gnu/packages/xiph.scm (ao): Add markup to description string.
 2016-05-02 22:05:52 +08:00
Jan Nieuwenhuizen b8e9c453de gnu: bootstrap: Add case for i686-mingw. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for i686-mingw.

Signed-off-by: Manolis Ragkousis <manolis837@gmail.com>
 2016-05-02 22:05:52 +08:00
Ricardo Wurmus b74f64a960 gnu: Add r-xnomial. 
* gnu/packages/statistics.scm (r-xnomial): New variable.
 2016-05-02 11:10:38 +02:00
Ben Woodcroft cba962086d gnu: ruby-hashery: Update to 2.1.2. 
* gnu/packages/ruby.scm (ruby-hashery): Update to 2.1.2.
[arguments]: Remove test workaround.
 2016-05-02 10:20:17 +10:00
Nicolas Goaziou acb31b5dcd
gnu: asymptote: Update to 2.37. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.37.
* gnu/packages/patches/asymptote-gsl2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove reference.
 2016-05-01 17:58:39 -04:00
Danny Milosavljevic 63bcec7140
gnu: Add python2-shedskin. 
* gnu/packages/python.scm (python2-shedskin): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-01 13:45:57 -04:00
Ricardo Wurmus d706d94335 gnu: guitarix: Update to 0.35.0. 
* gnu/packages/audio.scm (guitarix): Update to 0.35.0.
 2016-05-01 18:15:59 +02:00
Ricardo Wurmus dfc9d18e88 gnu: qtractor: Update to 0.7.7. 
* gnu/packages/music.scm (qtractor): Update to 0.7.7.
 2016-05-01 18:15:59 +02:00
Ricardo Wurmus 1b90e57eb7 gnu: Add antiword. 
* gnu/packages/textutils.scm (antiword): New variable.
 2016-05-01 18:15:59 +02:00
Ricardo Wurmus a66a60f251 gnu: Add synthv1. 
* gnu/packages/music.scm (synthv1): New variable.
 2016-05-01 18:15:59 +02:00
John Darrington 2df092a93d gnu: ao: Replace "itemize" with "enumerate" in description string. 
* gnu/packages/xiph.scm (ao): Replace "itemize" with "enumerate" in description string.
  Apparently Guile cannot yet handle "itemize" when creating HTML.
 2016-05-01 18:11:51 +02:00
John Darrington 55f4b4e00f gnu: ao: Format the description string. 
* gnu/packages/xiph.scm (ao): Add markup to description string.
 2016-05-01 17:00:52 +02:00
Jan Nieuwenhuizen 3135b95fd8 gnu: bootstrap: Add case for i686-mingw. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for i686-mingw.

Signed-off-by: Manolis Ragkousis <manolis837@gmail.com>
 2016-05-01 13:55:33 +03:00
Leo Famulari e411ce1860
gnu: poppler: Fix CVE-2015-8868. 
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
* gnu/packages/patches/poppler-CVE-2015-8868.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-30 16:14:38 -04:00
Leo Famulari c7794307f1
gnu: ncmpcpp: Remove bootstrapping phase. 
* gnu/packages/mpd.scm (ncmpcpp)[arguments]: Remove 'autogen' phase.
[native-inputs]: Remove autoconf, automake, and libtool.
 2016-04-30 14:38:49 -04:00
Ben Woodcroft 324efb8888 gnu: Add muscle. 
* gnu/packages/bioinformatics.scm (muscle): New variable.
 2016-04-30 15:46:24 +10:00
Mark H Weaver 6c0e2dbbf3 gnu: subversion: Update to 1.8.16 [fixes CVE-2016-{2167,2168}]. 
* gnu/packages/version-control.scm (subversion): Update to 1.8.16.
 2016-04-30 00:31:08 -04:00
Rene Saavedra 7ffbbea00d
gnu: Add uhttpmock. 
* gnu/packages/web.scm (uhttpmock): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-29 21:56:27 -04:00
Ben Woodcroft 9d17702500 gnu: ruby-hashery: Disable failing test. 
* gnu/packages/ruby.scm (ruby-hashery)[arguments]: Remove failing
test.
 2016-04-30 08:44:57 +10:00
Rob Syme b0e52f52b7 gnu: ruby: Update to 2.3.1. 
* gnu/packages/ruby.scm (ruby): Update to 2.3.1.
[origin] Add symlink patch.
* gnu/packages/patches/ruby-symlinkfix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2016-04-30 08:39:27 +10:00
Eric Bavier f36a1ebaab gnu: Add Fossil. 
* gnu/packages/version-control.scm (fossil): New variable.
* gnu/packages/patches/fossil-test-fixes.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-29 16:42:10 -05:00
Ricardo Wurmus 3b13c3c03c gnu: eigen: Update to 3.2.8. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.8.
 2016-04-29 22:36:23 +02:00
Danny Milosavljevic 2b56dc019a
gnu: Add hplip. 
* gnu/packages/cups.scm (hplip): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-29 18:05:44 +02:00
Nicolas Goaziou 99a0044614
gnu: giac-xcas: Update to 1.2.2-41. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-41.
[inputs]: Add libxinerama.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-29 02:50:41 -04:00
Mark H Weaver 8faee0fd53 gnu: webkitgtk: Update to 2.12.2. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.2.
 2016-04-28 15:34:59 -04:00
Efraim Flashner a64cbb6f32
gnu: python-celery: Rearrange inputs. 
* gnu/packages/python.scm (python-celery)[propagated-inputs]: Move
python-pytz, python-billiard, python-kombu ...
[inputs]: ... to here. Add python-amqp, python-anyjson.
 2016-04-28 19:43:21 +03:00
Efraim Flashner 0848d8d3a6
gnu: python-rauth: Rearrange inputs. 
* gnu/packages/python.scm (python-rauth)[native-inputs]: Remove it.
[propagated-inputs]: Move python-requests ...
[inputs]: ... to here.
[properties]: Define python2-variant.
(python2-rauth): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-28 19:43:21 +03:00
Ludovic Courtès f28cb89e48
gnu: libtasn1: Replace 4.7 with 4.8 [fixes CVE-2016-4008]. 
* gnu/packages/tls.scm (libtasn1)[replacement]: New field.
(libtasn1/fixed): New variable.
 2016-04-28 18:03:01 +02:00
Kei Yamashita 158f5734cf gnu: Add Red Eclipse. 
* gnu/packages/games.scm (redeclipse): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-28 18:44:53 +03:00
Alex Kost a319637e97 gnu: magit: Update to 2.6.2. 
* gnu/packages/emacs.scm (magit): Update to 2.6.2.
 2016-04-28 18:44:52 +03:00
Efraim Flashner 0bfb9b4399
gnu: gzip: Update to 1.8. 
* gnu/packages/compression.scm (gzip): Update to 1.8.
 2016-04-28 18:14:18 +03:00
Mark H Weaver dde2a94c09 gnu: icecat: Add fixes for CVE-2016-{2805,2807,2808,2814} etc. 
* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-update-bundled-graphite2: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.

icecat fixup
 2016-04-28 10:25:19 -04:00
Mark H Weaver 3161f6a4ec gnu: nss: Update to 3.23. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.23.
[arguments]: In the 'install' phase, remove libgtest1.so from the
output.
 2016-04-28 10:25:18 -04:00
Mark H Weaver b3107888aa gnu: nspr: Update to 4.12. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.12.
 2016-04-28 10:25:18 -04:00
Ricardo Wurmus a39f48b80d gnu: setbfree: Update to 0.8.1. 
* gnu/packages/music.scm (setbfree): Update to 0.8.1.
 2016-04-28 07:16:55 +02:00
Ricardo Wurmus acf2320b22 gnu: zynaddsubfx: Update to 2.5.4. 
* gnu/packages/music.scm (zynaddsubfx): Update to 2.5.4.
 2016-04-28 07:16:49 +02:00
宋文武 6fdc73e099 gnu: fltk: Fix undefined symbol `Fl_XFont_On_Demand::value'. 
* gnu/packages/patches/fltk-xfont-on-demand.patch: New patch.
* gnu/packages/fltk.scm (fltk)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-04-28 12:23:51 +08:00
Ludovic Courtès 5ca54f41a0
gnu: patches: Update to latest revision. 
* gnu/packages/patchutils.scm (patches): Change URL to the repository of
Stefan Hajnoczi, and update to latest revision.
 2016-04-27 23:43:36 +02:00
Efraim Flashner 151065d02a gnu: kde-frameworks: Update to 5.21.0. 
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, kwindowsystem,
oxygen-icons): Update to 5.21.0.
 2016-04-27 22:08:51 +03:00
Efraim Flashner 957ba69290 gnu: quassel: Update to 0.12.4. 
* gnu/packages/irc.scm (quassel): Update to 0.12.4.
 2016-04-27 22:08:51 +03:00
David Thompson 34879162bc gnu: node: Update to 6.0.0. 
* gnu/packages/node.scm (node): Update to 6.0.0.
 2016-04-27 14:12:28 -04:00
David Thompson 5304e6f2c9 gnu: libuv: Update to 1.9.0. 
* gnu/packages/libevent.scm (libuv): Update to 1.9.0.
 2016-04-27 14:12:21 -04:00
Leo Famulari 38e2104c5d
gnu: vdirsyncer: Update to 0.10.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.10.0.
[propagated-inputs]: Remove python-lxml.
 2016-04-27 14:04:08 -04:00
Leo Famulari 5d88b4f8a8
gnu: mysql: Update to 5.7.12. 
Fixes CVE-2016-0639, CVE-2016-0642, CVE-2016-0643, CVE-2016-0647,
CVE-2016-0648, CVE-2016-0655, CVE-2016-0657, CVE-2016-0659, CVE-2016-0662,
CVE-2016-0666, CVE-2016-0667, CVE-2016-0705, CVE-2016-2047.

* gnu/packages/databases.scm (mysql): Update to 5.7.12.
 2016-04-27 13:53:56 -04:00
Ludovic Courtès f0b8689884
gnu: blender: Build against ffmpeg 2.8. 
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/graphics.scm (blender)[inputs]: Use FFMPEG-2.8 instead of
FFMPEG.
 2016-04-27 14:17:56 +02:00
Ludovic Courtès 7de1f10363
gnu: Add missing synopses and descriptions. 
* gnu/packages/bootstrap.scm (package-from-tarball)
(%bootstrap-glibc, %bootstrap-gcc): Set 'description' field.
* gnu/packages/make-bootstrap.scm (%bootstrap-tarballs): Set 'synopsis'
and 'description'.
 2016-04-27 11:57:48 +02:00
Roel Janssen 068e476f68 gnu: Add java-xz. 
* gnu/packages/java.scm (java-xz): New variable.
 2016-04-27 10:52:34 +02:00
Ricardo Wurmus 5135354f62 gnu: python-ly: Update to 0.9.4. 
* gnu/packages/python.scm (python-ly): Update to 0.9.4.
 2016-04-27 10:40:23 +02:00
Ben Woodcroft 416381daa2 gnu: ruby-2.2: Update to 2.2.5. 
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.5.
[origin]: Remove snippet.
 2016-04-27 17:39:05 +10:00
Leo Famulari 8e740bca65
gnu: icedtea-8: Update to 3.0.1. 
Fixes CVE-2016-0686, CVE-2016-0687, CVE-2016-0695, CVE-2016-3425,
CVE-2016-3426, CVE-2016-3427.

* gnu/packages/java.scm (icedtea-8): Update to 3.0.1.
 2016-04-27 01:43:08 -04:00
Leo Famulari 0a0b5ebed2
gnu: icedtea-7: Update to 2.6.6. 
Fixes CVE-2016-0686, CVE-2016-0687, CVE-2016-0695, CVE-2016-3425, CVE-2016-3427.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.6.
 2016-04-27 00:15:33 -04:00
Ricardo Wurmus 1d6c6af0e2 gnu: Add gimp-fourier. 
* gnu/packages/gimp.scm (gimp-fourier): New variable.
 2016-04-26 22:18:00 +02:00
Ricardo Wurmus c30a66dedb gnu: Add Aria Maestosa. 
* gnu/packages/music.scm (aria-maestosa): New variable.
 2016-04-26 22:16:24 +02:00
Ricardo Wurmus fc7c74e43d gnu: wxwidgets: Enable webview support. 
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Add webkitgtk-2.4.
[arguments]: Add configure flags to enable webview via the webkitgtk
backend.
 2016-04-26 22:15:25 +02:00
Ricardo Wurmus 2729509003 gnu: java-swt: Update to 4.5. 
* gnu/packages/java.scm (java-swt): Update to 4.5.
 2016-04-26 21:27:15 +02:00
Ricardo Wurmus 4b2eede485 gnu: frescobaldi: Update to 2.19.0. 
* gnu/packages/music.scm (frescobaldi): Update to 2.19.0.
 2016-04-26 21:12:49 +02:00
Ricardo Wurmus c5ad883b16 gnu: r-rcpparmadillo: Update to 0.6.700.3.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 2c81794ed9 gnu: r-plotly: Update to 3.4.13. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.4.13.
[propagated-inputs]: Add r-hexbin, r-scales, and r-tidyr.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 59bf9f4e6b gnu: r-httr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-httr): Update to 1.1.0.
[propagated-inputs]: Add r-openssl.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 44d792c2e9 gnu: r-r6: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-r6): Update to 2.1.2.
[propagated-inputs]: Remove.
 2016-04-26 17:06:18 +02:00