Commit Graph

42084 Commits

Author SHA1 Message Date
Ivan Petkov d7d3bdca89
gnu: rust: Update to 1.32.0.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.31): ...this.
(rust): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-31 21:11:55 +02:00
Brett Gilio ccbaeba38e
gnu: python-language-server: Update to 0.26.1.
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.26.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-03-31 21:16:17 +03:00
Efraim Flashner 36a4366d79
gnu: Fix descriptions to not use quotes.
* gnu/packages/admin.scm (wpa-supplicant-minimal, mingetty, di),
* gnu/packages/audio.scm (fil-plugins),
* gnu/packages/base.scm (make-ld-wrapper, make-glibc-locales),
* gnu/packages/bioinformatics.scm (r-samtools),
* gnu/packages/chez.scm (chez-mit),
* gnu/packages/commencement.scm (make-gcc-toolchain),
* gnu/packages/compression.scm (fastjar),
* gnu/packages/cran.scm (r-maps, r-rcpp),
* gnu/packages/databases.scm (sparql-query),
* gnu/packages/dunst.scm (dunst),
* gnu/packages/ftp.scm (ncftp),
* gnu/packages/gl.scm (freeglut),
* gnu/packages/haskell-check.scm (ghc-tasty-golden),
* gnu/packages/haskell.scm (ghc-case-insensitive, ghc-text,
ghc-haskell-src, ghc-syb, ghc-deepseq-generics, ghc-network-uri,
ghc-rerebase, ghc-zlib),
* gnu/packages/image.scm (jbig2dec),
* gnu/packages/kde-frameworks.scm (kinit, karchive),
* gnu/packages/linux.scm (wireless-tools, perf, module-init-tools, kbd),
* gnu/packages/lirc.scm (lirc),
* gnu/packages/lisp.scm (uglify-js),
* gnu/packages/mate.scm (mate-netbook),
* gnu/packages/microcom.scm (microcom),
* gnu/packages/music.scm (bristol),
* gnu/packages/networking.scm (perl-geo-ip),
* gnu/packages/patchutils.scm (patches),
* gnu/packages/perl-check.scm (perl-test-more-utf8),
* gnu/packages/perl.scm (perl-log-report-optional, perl-file-which,
perl-io-tty, perl-log-any, perl-digest-sha1, perl-class-load,
perl-regexp-common, perl-module-pluggable, perl-class-modifier),
* gnu/packages/python-xyz.scm (python-backports-abc, python-natsort),
* gnu/packages/samba.scm (iniparser),
* gnu/packages/search.scm (mlocate),
* gnu/packages/spice.scm (spice),
* gnu/packages/statistics.scm (r-dt, r-lubridate, r-estimability,
r-commonmark, r-digest, r-viridislite, r-stringr),
* gnu/packages/tex.scm (texlive-latex-changebar),
* gnu/packages/version-control.scm (subversion),
* gnu/packages/w3m.scm (w3m),
* gnu/packages/web.scm (perl-http-parser,
perl-plack-middleware-reverseproxy),
* gnu/packages/xorg.scm (xkeyboard-config, mkfontdir, xcursor-theme,
mkfontscale, xinit, font-alias)[description]: Use @code instead of quotes.
2019-03-31 20:51:10 +03:00
Tobias Geerinckx-Rice cd9ca20a5d
gnu: znc: Update to 1.7.3.
* gnu/packages/messaging.scm (znc): Update to 1.7.3.
2019-03-31 16:05:18 +02:00
Nicolas Goaziou ad4f644226
gnu: Add flare.
* gnu/packages/games.scm (flare-engine, flare-game): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2019-03-31 10:35:31 +08:00
Leo Famulari 6d3e149f10
gnu: dovecot: Update to 2.3.5.1 [fixes CVE-2019-7524].
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.1.
2019-03-30 15:57:13 -04:00
Leo Famulari 6e1f91d91c
gnu: khal: Update to 0.10.0.
* gnu/packages/calendar.scm (khal): Update to 0.10.0.
[native-inputs]: Replace tzdata with tzdata-for-tests.
[arguments]: Simplify the check phase.
2019-03-30 15:10:19 -04:00
Ludovic Courtès e23f2ff183
gnu: Rename "gnubackgammon" back to "gnubg".
This reverts c97e4d8bbe, which was not
consensual and broke 'tests/guix-package.sh'.

* gnu/packages/games.scm (gnubackgammon): Rename to...
(gnubg): ... this, and rename the 'gnubg' deprecated alias to
'gnubackgammon'.
2019-03-30 15:19:32 +01:00
Ludovic Courtès 154f1f0937
packages: Remove 'maintainers' field.
This field was never used and doesn't match the way we collectively
maintain packages.

* guix/packages.scm (<package>)[maintainers]: Remove.
2019-03-30 15:19:32 +01:00
Ludovic Courtès a7646bc5e1
packages: Remove 'self-native-input?' field.
This field has become unnecessary with the addition of 'this-package'.

* guix/packages.scm (<package>)[self-native-input?]: Remove.
(package->bag): Adjust accordingly.
* doc/guix.texi (package Reference): Remove 'self-native-input?'.
2019-03-30 15:19:32 +01:00
Ludovic Courtès 329c3c323e
gnu: guile: Remove version 2.0.13.
This package was unused since 0991fd5336.

* gnu/packages/guile.scm (guile-2.0.13): Remove.
2019-03-30 15:19:32 +01:00
Ludovic Courtès 528ea990c3
gnu: Use 'this-package' as a native input instead of 'self-native-input?'.
* gnu/packages/file.scm (file)[self-native-input?]: Remove.
[native-inputs]: New field.
* gnu/packages/guile.scm (guile-1.8)[self-native-input?]: Remove.
[native-inputs]: New field.
(guile-2.0)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/ncurses.scm (ncurses)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/python-xyz.scm (python-file)[self-native-input?]: Remove.
[native-inputs]: New field.
2019-03-30 15:19:32 +01:00
Timothy Sample 398747f8f1
gnu: gnome-shell: Remove gnome-control-center from inputs.
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Remove
gnome-control-center.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:32 +01:00
Timothy Sample da43d1cb32
gnu: evolution-data-server: Add 'libedataserverui' output.
gnu/packages/gnome.scm (evolution-data-server)[outputs]: Add
'libedataserverui'.
[arguments]: Add phases so that only libedataserverui is linked with
WebKitGTK, and that it is moved to its own output.
(evolution, gnome-calendar, gnome-todo)[inputs]: Add libedataserverui.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:31 +01:00
Timothy Sample 14c297fde1
gnu: gnome-online-accounts: Split off 'lib' output.
gnu/packages/gnome.scm (gnome-online-accounts)[outputs]: Add 'lib'.
[arguments]: Set the 'libdir' path to the 'out' output, and add a phase
to ensure that libgoa gets installed in the 'lib' output.
(evolution-data-server, gfbgraph, gnome-calendar, gnome-control-center,
gnome-todo, libgdata, libzapojit): Use the 'lib' output of
gnome-online-accounts.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-30 15:19:31 +01:00
Brian Leung 29a9eb9e1a
gnu: Add emacs-counsel-projectile.
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-30 17:03:57 +03:00
Rutger Helling 03a33eee72
gnu: wine-staging: Update to 4.5.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.5.
* gnu/packages/wine.scm (wine-staging): Update to 4.5.
2019-03-30 14:58:36 +01:00
Ludovic Courtès d8bead6c5d
system: Define 'this-operating-system'.
* gnu/system.scm (<operating-system>): Choose 'this-operating-system' as
the 'this' identifier.
[essential-services]: Adjust accordingly.
2019-03-30 11:08:39 +01:00
Ludovic Courtès adb6462c4c
packages: Define 'this-package' and 'this-origin'.
* guix/packages.scm (<origin>): Choose 'this-origin' as the 'this'
identifier.
(<package>): Choose 'this-package'.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Use 'this-package'
instead of 'this-record'.
* gnu/packages/version-control.scm (git)[arguments]: Likewise.
2019-03-30 11:08:39 +01:00
Ludovic Courtès d2be7e3c4b
records: Support custom 'this' identifiers.
This lets record users choose an identifier other than 'this-record'.

* guix/records.scm (make-syntactic-constructor): Add #:this-identifier.
[wrap-field-value]: Honor it.
(define-record-type*): Add form with extra THIS-IDENTIFIER and honor
it.
* tests/records.scm ("define-record-type* & thunked & inherit & custom this"):
New test.
2019-03-30 11:08:39 +01:00
Ricardo Wurmus ec12e53736
gnu: Add r-xcms.
* gnu/packages/bioconductor.scm (r-xcms): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus c8310056f4
gnu: Add r-massspecwavelet.
* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus 50d9177051
gnu: Add r-xbseq.
* gnu/packages/bioconductor.scm (r-xbseq): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus a6e1eb1a96
gnu: Add r-roar.
* gnu/packages/bioconductor.scm (r-roar): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus 98a2af31a8
gnu: Add r-yarn.
* gnu/packages/bioconductor.scm (r-yarn): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 59cf26292f
gnu: Add r-quantro.
* gnu/packages/bioconductor.scm (r-quantro): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 8d1990d495
gnu: Add r-downloader.
* gnu/packages/cran.scm (r-downloader): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus f562c90aa8
gnu: Add r-yaqcaffy.
* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 4675b3cfa3
gnu: Add r-simpleaffy.
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus e99380d67b
gnu: Add r-gcrma.
* gnu/packages/bioconductor.scm (r-gcrma): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 303f2ed1c6
gnu: Add r-yapsa.
* gnu/packages/bioconductor.scm (r-yapsa): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 28098414d0
gnu: Add r-somaticsignatures.
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 398c4a9347
gnu: Add r-gtrellis.
* gnu/packages/bioconductor.scm (r-gtrellis): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus 9563dd5599
gnu: Add r-pmcmr.
* gnu/packages/cran.scm (r-pmcmr): New variable.
2019-03-30 08:55:45 +01:00
Mark H Weaver bc91562939
gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat.
Fixes <https://bugs.gnu.org/34454>.

* gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+/fixed): New variable.
(gtk+)[replacement]: New field.
2019-03-30 02:34:24 -04:00
Tobias Geerinckx-Rice c948cf9092
gnu: Add font-iosevka-slab.
The ’slab’ variants of Iosevka were moved to a separate archive with
version 2.0.0.

* gnu/packages/fonts.scm (font-iosevka-slab): New public variable.
2019-03-29 21:09:11 +01:00
Tobias Geerinckx-Rice 785747a974
gnu: font-iosevka: Update to 2.2.0.
* gnu/packages/fonts.scm (font-iosevka): Update to 2.2.0.
2019-03-29 21:00:23 +01:00
Ricardo Wurmus 51e98f7e0f
gnu: Add r-yamss.
* gnu/packages/bioconductor.scm (r-yamss): New variable.
2019-03-29 19:28:11 +01:00
Ricardo Wurmus 5cfa4bff69
gnu: Add r-ebimage.
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
2019-03-29 19:28:03 +01:00
Ricardo Wurmus ffe7029bab
gnu: Add r-aucell.
* gnu/packages/bioconductor.scm (r-aucell): New variable.
2019-03-29 18:10:46 +01:00
Ricardo Wurmus f31e10f82e
gnu: Add r-allelicimbalance.
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
2019-03-29 18:07:17 +01:00
Ricardo Wurmus adf7d8135b
gnu: Add r-annotationtools.
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
2019-03-29 18:05:45 +01:00
Ricardo Wurmus 0b91b7b969
gnu: Add r-annotationfuncs.
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
2019-03-29 17:49:54 +01:00
Ricardo Wurmus 9bf4bb19c9
gnu: Add r-abaenrichment.
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus 3972cfce6a
gnu: Add r-gofuncr.
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus 692bce1595
gnu: Add r-abadata.
* gnu/packages/bioconductor.scm (r-abadata): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus 1fab2cf811
gnu: Add r-mapplots.
* gnu/packages/cran.scm (r-mapplots): New variable.
2019-03-29 17:43:25 +01:00
Ricardo Wurmus 32e0f906d7
gnu: Add r-atacseqqc.
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus e5bff3079d
gnu: Add r-genomicscores.
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
2019-03-29 17:13:45 +01:00
Ricardo Wurmus 2a72ef561b
gnu: Add r-motifstack.
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
2019-03-29 17:13:45 +01:00