8f5caf9366
gnu: Add maven-plugin-api.
...
* gnu/packages/maven.scm (maven-plugin-api): New variable.
2018-06-16 13:17:52 +02:00
ab621bf142
gnu: Add java-qdox.
...
* gnu/packages/java.scm (java-qdox): New variable.
2018-06-16 13:17:50 +02:00
7d65489ffe
gnu: Add java-plexus-cli.
...
* gnu/packages/java.scm (java-plexus-cli): New variable.
2018-06-16 13:17:48 +02:00
087583a7db
gnu: Add java-eclipse-jetty-webapp-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-webapp-9.2): New variable.
2018-06-16 13:17:46 +02:00
d736511864
gnu: Add java-eclipse-jetty-webapp.
...
* gnu/packages/web.scm (java-eclipse-jetty-webapp): New variable.
2018-06-16 13:17:44 +02:00
38b57575c1
gnu. Add java-eclipse-jetty-xml-9.2.
...
* gnu/packages/web.scm (java-eclipse-jetty-xml-9.2): New variable.
2018-06-16 13:17:42 +02:00
f69a1d04a1
gnu: Add java-eclipse-jetty-xml.
...
* gnu/packages/web.scm (java-eclipse-jetty-xml): New variable.
2018-06-16 13:17:39 +02:00
c099f6a716
gnu: java-eclipse-jetty-security-9.2: Ignore test error.
...
* gnu/packages/web.scm (java-eclipse-jetty-security-9.2)[arguments]:
Ignore one failing test.
2018-06-16 13:17:19 +02:00
901bcb7815
gnu: pigx-chipseq: Update to 0.0.16.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.16.
2018-06-16 12:11:09 +02:00
3e3fa14faa
gnu: mesa: Update to 18.1.2.
...
* gnu/packages/gl.scm (mesa): Update to 18.1.2.
2018-06-16 09:40:50 +02:00
12e530ba63
gnu: BIND: Fix CVE-2018-5738.
...
* gnu/packages/patches/bind-CVE-2018-5738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dns.scm (isc-bind)[source]: Use it.
2018-06-15 16:41:16 -04:00
a7c8716928
gnu: grub: Fix build on i686.
...
Fixes <https://bugs.gnu.org/31380 >.
* gnu/packages/bootloaders.scm (grub)[native-inputs]: Add "ld-wrapper"
and "binutils".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15 16:41:52 +02:00
4ce4fc5010
system: Add os-with-u-boot.
...
* gnu/system/install.scm (os-with-u-boot): New procedure.
* gnu/packages/bootloaders.scm (make-u-boot-package): Export.
* doc/guix.texi (Building the Installation Image for ARM Boards): New
subsection.
2018-06-15 14:16:37 +02:00
0017e55f89
gnu: Add shadowsocks.
...
* gnu/packages/networking.scm (shadowsocks): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-15 10:04:59 +02:00
ad21323c96
gnu: cpuid: Update to 20180519.
...
* gnu/packages/linux.scm (cpuid): Update to 20180519.
2018-06-15 09:57:17 +02:00
d41a5f826d
gnu: light: Return #t from phase.
...
* gnu/packages/linux.scm (light)[arguments]: End ‘patch-makefile’ phase
with #t.
2018-06-15 09:57:17 +02:00
a756fa5ac0
gnu: light: Update to 1.1.
...
* gnu/packages/linux.scm (light): Update to 1.1.
[source]: Switch to GIT-FETCH.
2018-06-15 09:57:17 +02:00
14b0c49670
gnu: f2fs-tools: Update to 1.10.0.
...
* gnu/packages/linux.scm (f2fs-tools): Update to 1.10.0.
2018-06-15 09:57:16 +02:00
52d5b73fc4
gnu: spice-protocol: Update to 0.12.14.
...
* gnu/packages/spice.scm (spice-protocol): Update to 0.12.14.
2018-06-15 09:57:16 +02:00
0ce92d74a2
gnu: python-pyrfc3339: Update to 1.1.
...
* gnu/packages/time.scm (python-pyrfc3339): Update to 1.1.
2018-06-15 09:57:16 +02:00
5bc4188ffd
gnu: gource: Update to 0.49.
...
* gnu/packages/version-control.scm (gource): Update to 0.49.
2018-06-15 09:57:16 +02:00
d21fb90a27
gnu: perl-xml-libxml-simple: Update to 0.99.
...
* gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.99.
2018-06-15 09:57:16 +02:00
914c6f621e
gnu: fcitx-configtool: Update to 0.4.10.
...
* gnu/packages/fcitx.scm (fcitx-configtool): Update to 0.4.10.
2018-06-15 09:57:15 +02:00
50ca5fb332
gnu: fcitx: Update to 4.2.9.6.
...
* gnu/packages/fcitx.scm (fcitx): Update to 4.2.9.6.
[native-inputs]: Add extra-cmake-modules.
2018-06-15 09:57:15 +02:00
657bed34f4
gnu: fcitx: Use HTTPS home page.
...
* gnu/packages/fcitx.scm (fcitx)[home-page]: Use HTTPS.
2018-06-15 09:57:15 +02:00
26d66a518c
gnu: perl-xml-xpath: Update to 1.42.
...
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.42.
2018-06-15 09:57:15 +02:00
9332d70602
gnu: perl-xml-xpath: Propagate inputs.
...
* gnu/packages/xml.scm (perl-xml-xpath)[inputs]: Rename this...
[propagated-inputs]: ...to this.
2018-06-15 09:57:14 +02:00
50632f0a8d
gnu: perl-xml-atom: Propagate inputs.
...
* gnu/packages/xml.scm (perl-xml-atom)[inputs]: Rename to...
[propagated-inputs]: ...this, and...
[native-inputs]: ...remove duplicate packages from here.
2018-06-15 09:57:14 +02:00
beb2d4be84
gnu: nickle: Update to 2.81.
...
* gnu/packages/nickle.scm (nickle): Update to 2.81.
2018-06-15 09:57:14 +02:00
752ff6e9aa
gnu: r-cubature: Update to 1.4.
...
* gnu/packages/cran.scm (r-cubature): Update to 1.4.
2018-06-15 09:57:14 +02:00
abde01f27d
gnu: neofetch: Update to 4.0.2.
...
* gnu/packages/admin.scm (neofetch): Update to 4.0.2.
2018-06-15 09:18:13 +02:00
cf9a29b24c
gnu: Add r-genomicinteractions.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
2018-06-15 09:14:01 +02:00
a32279ffb6
gnu: Add r-interactionset.
...
* gnu/packages/bioconductor.scm (r-interactionset): New variable.
2018-06-15 09:14:01 +02:00
056402220e
gnu: innoextract: Update to 1.7.
...
* gnu/packages/compression.scm (innoextract): Update to 1.7.
2018-06-15 09:10:35 +02:00
6ffdfe6a01
gnu: Add r-riboseqr.
...
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
2018-06-15 07:43:23 +02:00
0490f9de88
gnu: Add r-riboprofiling.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
2018-06-15 07:43:22 +02:00
609f4ad12f
gnu: Add r-chipcomp.
...
* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
2018-06-15 07:43:22 +02:00
2bece692a6
gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New
variable.
2018-06-15 07:43:22 +02:00
6fbd759b13
gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New
variable.
2018-06-15 07:43:22 +02:00
dfac7eb917
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked):
New variable.
2018-06-15 07:43:22 +02:00
bb15b581f7
gnu: Add r-bayseq.
...
* gnu/packages/bioconductor.scm (r-bayseq): New variable.
2018-06-15 07:43:22 +02:00
b494bbe466
gnu: certbot, python-acme: Update to 0.25.1.
...
* gnu/packages/tls.scm (certbot): Update 0.25.1.
(python-acme): Update to 0.25.1.
[native-inputs]: Add python-pytest.
[propagated-inputs]: Add python-requests-toolbelt.
2018-06-14 19:38:56 -04:00
9297fc61cc
gnu: Go 1.10: Update to 1.10.3.
...
* gnu/packages/golang.scm (go-1.10): Update to 1.10.3.
2018-06-14 17:49:56 -04:00
96fd9a0e62
gnu: Go 1.9: Update to 1.9.7.
...
* gnu/packages/golang.scm (go-1.9): Update to 1.9.7.
2018-06-14 17:49:53 -04:00
565af91acc
gnu: emacs-racket-mode: Update and bug fix.
...
* gnu/packages/emacs.scm (emacs-racket-mode): Update and bug fix.
- Update to the current commit
- Bug fix: include Racket files in addition to Emacs Lisp files
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
a8fb82a8ab
gnu: Add vowpal-wabbit.
...
* gnu/packages/machine-learning.scm (vowpal-wabbit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
112c2c010b
gnu: Add lightgbm.
...
* gnu/packages/machine-learning.scm (lightgbm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-14 23:34:59 +02:00
baed923682
self: Add 'guix-daemon' to the result.
...
* gnu/packages/package-management.scm (guix-daemon): New variable.
* guix/self.scm (whole-package): Add #:daemon and honor it.
(compiled-guix): Pass #:daemon to 'whole-package'.
2018-06-14 23:34:59 +02:00
0effadcad5
gnu: libressl: Update to 2.7.4 [fixes CVE-2018-{0495,0732}].
...
* gnu/packages/tls.scm (libressl): Update to 2.7.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-06-14 17:11:17 -04:00
e3173fe18e
gnu: botan: Update to 2.6.0 [fixes CVE-2018-{9127,9860}].
...
* gnu/packages/crypto.scm (botan): Update to 2.6.0.
2018-06-14 16:02:52 -04:00
a4bae9af00
gnu: vdirsyncer: Update to 0.6.6.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.6.6.
[arguments]: Simplify the man-page building.
2018-06-14 15:51:57 -04:00
44d1b9569b
gnu: python-click-log: Update to 0.3.2.
...
* gnu/packages/python.scm (python-click-log): Update to 0.3.2.
2018-06-14 15:51:56 -04:00
b6c675c693
gnu: GnuPG 1.4: Update to 1.4.23.
...
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.23.
[source]: Remove patch.
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-06-14 15:35:23 -04:00
ef0d765605
gnu: python-freezegun: Update to 0.3.10.
...
* gnu/packages/check.scm (python-freezegun): Update to 0.3.10.
2018-06-14 18:55:52 +02:00
19611b7a0a
gnu: python-freezegun: Return #t from phase.
...
* gnu/packages/check.scm (python-freezegun)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-06-14 18:55:52 +02:00
d518261f05
gnu: cppcheck: Update to 1.84.
...
* gnu/packages/check.scm (cppcheck): Update to 1.84.
2018-06-14 18:55:51 +02:00
6dd5f2ea63
gnu: qrencode: Update to 4.0.2.
...
* gnu/packages/aidc.scm (qrencode): Update to 4.0.2.
2018-06-14 18:55:51 +02:00
f71619648c
gnu: perl-dbi: Update to 1.641.
...
* gnu/packages/databases.scm (perl-dbi): Update to 1.641.
2018-06-14 18:55:51 +02:00
1ba7a62362
gnu: python-nose-timer: Update to 0.7.2.
...
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.2.
[source]: Remove patch...
* gnu/packages/patches/python-nose-timer-drop-ordereddict.patch:
...delete file...
* gnu/local.mk (dist_patch_DATA): ...and remove it.
2018-06-14 18:55:46 +02:00
ecbac51a0c
gnu: openrct2: Downgrade to 0.1.1.
...
* gnu/packages/games.scm (openrct2): Downgrade to 0.1.1 due to audio not
working on 0.1.2+. Needs fixing before upgrade.
[arguments]: Add "-DDOWNLOAD_TITLE_SEQUENCES=OFF" configure-flag. Remove
'fixgcc7 and 'get-rid-of-errors phases.
[native-inputs]: Remove gcc@7.
2018-06-14 18:14:30 +02:00
43fa239717
gnu: emacs-password-store: Update to 1.7.2.
...
* gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.2.
[propagated-inputs]: Add emacs-with-editor.
2018-06-14 17:37:04 +02:00
ab6f400531
gnu: password-store: Update to 1.7.2.
...
* gnu/packages/password-utils.scm (password-store): Update to 1.7.2.
[source]: Remove 'password-store-gnupg-compat.patch'.
* gnu/packages/patches/password-store-gnupg-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-06-14 17:36:59 +02:00
f715f102e0
gnu: fio: Update to 3.7.
...
* gnu/packages/benchmark.scm (fio): Update to 3.7.
2018-06-14 15:41:09 +02:00
53131eab2d
gnu: Add minimap2.
...
* gnu/packages/bioinformatics.scm (minimap2): New variable.
2018-06-14 13:51:15 +02:00
ce573b1128
gnu: pigx-bsseq: Update to 0.0.9.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.9.
2018-06-14 12:56:49 +02:00
ea0a06cee2
Remove 'guix-register' and its traces.
...
* Makefile.am (SH_TESTS): Remove tests/guix-register.sh.
* build-aux/pre-inst-env.in (GUIX_REGISTER): Remove.
* gnu/build/install.scm (directives): Remove outdated comment.
* gnu/build/vm.scm (root-partition-initializer): Update comment.
* gnu/packages/package-management.scm (guix-register): Remove.
* guix/config.scm.in (%sbindir, %guix-register-program): Remove.
* guix/scripts/system.scm (install): Adjust docstring.
* guix/self.scm (make-config.scm): Remove #:guix. Do not generate
%sbindir and %guix-register-program.
(specification->package): Remove "guix".
* nix/guix-register/guix-register.cc: Remove.
* nix/libstore/store-api.cc (decodeValidPathInfo): Remove.
* nix/libstore/store-api.hh (decodeValidPathInfo): Remove declaration.
* nix/local.mk (sbin_PROGRAMS, guix_register_SOURCES)
(guix_register_CPPFLAGS, guix_register_LDFLAGS): Remove.
* tests/guix-register.sh: Remove.
2018-06-14 11:17:00 +02:00
c5a2e1ffcb
build: Require Guile-SQLite3.
...
The next commits make (sqlite3) an indirect dependency of (gnu build
install), which is itself used by (guix scripts system), hence this new
requirement.
* configure.ac: Error out when $guix_cv_have_recent_guile_sqlite3 is
false. Remove HAVE_GUILE_SQLITE3 Automake conditional.
* Makefile.am (MODULES, SCM_TESTS): Remove HAVE_GUILE_SQLITE3 conditions.
* doc/guix.texi (Requirements): Add Guile-SQLite3.
* README: Ditto.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-SQLITE3.
[arguments]: In 'wrap-program' phase, take guile-sqlite3 into account.
2018-06-14 11:16:58 +02:00
03439df66f
gnu: libgcrypt: Fix CVE-2018-0495.
...
* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New package.
2018-06-14 11:06:48 +03:00
85d79a79e4
gnu: Add python-dns-lexicon.
...
* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
2018-06-14 08:18:06 +02:00
b863b50d80
gnu: Add python-pynamecheap.
...
* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
2018-06-14 08:18:02 +02:00
f4adbe7405
gnu: Add python-tldextract.
...
* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
2018-06-14 08:17:59 +02:00
0dc572380b
gnu: Add python-requests-file.
...
* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
2018-06-14 08:17:55 +02:00
40c1b61aac
gnu: Add tmate.
...
* gnu/packages/terminals.scm (tmate): New variable.
2018-06-14 11:20:31 +05:30
0b5c16c07f
Fix typo in (gnu packages gtk) header.
...
* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
2018-06-14 04:30:50 +02:00
b262aba733
gnu: python-gnupg: Return #t from phase.
...
* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-06-14 04:02:14 +02:00
ff76a1e9ca
gnu: python-gnupg: Update to 0.4.3.
...
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
2018-06-14 04:01:21 +02:00
a1a3b25dfe
gnu: custom-gcc: Fix regex used for matching executables.
...
Fixes <https://bugs.gnu.org/31561 >.
* gnu/packages/gcc.scm (custom-gcc)[arguments]: Fix regex used for matching
broken or conflicting executables.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-14 01:30:44 +02:00
2b78360138
gnu: sssd: Update to 1.16.2.
...
* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
2018-06-14 00:52:30 +02:00
844cc1c8f3
gnu: pigx-scrnaseq: Update to 0.0.5.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
2018-06-13 22:30:55 +02:00
4bf474b243
gnu: emacs-orgalist: Update to 1.8.
...
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
2018-06-13 21:38:18 +02:00
935cb931b5
gnu: emacspeak: Update to 48.0.
...
* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'. In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
2018-06-13 14:44:13 -04:00
a8ef66f94d
gnu: mesa: Build tegra driver on arm systems.
...
* gnu/packages/gl.scm (mesa)[arguments]: Add 'tegra' to the
gallium-drivers list for armhf-linux and aarch64-linux.
2018-06-13 19:37:04 +03:00
6ccd88e8cb
gnu: r-factoextra: Fix syntax error.
...
* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
2018-06-13 16:42:29 +02:00
13b8dcf589
gnu: r-seurat: Update to 2.3.2.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
2018-06-13 15:14:37 +02:00
5b2a339e19
gnu: r-s4vectors: Update to 0.18.3.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
2018-06-13 15:14:37 +02:00
5b730eba3e
gnu: r-biocviews: Update to 1.48.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
2018-06-13 15:14:37 +02:00
c812f46817
gnu: r-rjson: Update to 0.2.20.
...
* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
2018-06-13 15:14:37 +02:00
242ffd6c80
gnu: r-zoo: Update to 1.8-2.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
2018-06-13 15:14:37 +02:00
6221de1879
gnu: r-rmarkdown: Update to 1.10.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
2018-06-13 15:14:37 +02:00
d086829d39
gnu: r-highr: Update to 0.7.
...
* gnu/packages/statistics.scm (r-highr): Update to 0.7.
2018-06-13 15:14:37 +02:00
26a53dd957
gnu: r-stringi: Update to 1.2.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
2018-06-13 15:14:37 +02:00
3399dc97fc
gnu: r-munsell: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
2018-06-13 15:14:37 +02:00
0357db53c8
gnu: r-rgooglemaps: Update to 1.4.2.
...
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
2018-06-13 15:14:37 +02:00
1df9a0cf47
gnu: r-reticulate: Update to 1.8.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
2018-06-13 15:14:37 +02:00
fa7236f1b3
gnu: r-later: Update to 0.7.3.
...
* gnu/packages/cran.scm (r-later): Update to 0.7.3.
2018-06-13 15:14:37 +02:00
36dc359186
gnu: r-radiant-data: Update to 0.9.5.
...
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
2018-06-13 15:14:37 +02:00
014818b691
gnu: r-cubature: Update to 1.3-13.
...
* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
2018-06-13 15:14:37 +02:00
8d2f8aeddf
gnu: r-extradistr: Update to 1.8.9.
...
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
2018-06-13 15:14:37 +02:00
1268a995da
gnu: r-statnet-common: Update to 4.1.2.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
2018-06-13 15:14:37 +02:00
2bce7795c1
gnu: r-stringdist: Update to 0.9.5.1.
...
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
2018-06-13 15:14:37 +02:00
d0396c8ea1
gnu: r-rcpproll: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
2018-06-13 15:14:37 +02:00
a151f1e60a
gnu: r-extremes: Update to 2.0-9.
...
* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
2018-06-13 15:14:37 +02:00
d87130cb2e
gnu: r-sp: Update to 1.3-1.
...
* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
2018-06-13 15:14:37 +02:00
5fa9be1118
gnu: r-getoptlong: Update to 0.1.7.
...
* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
2018-06-13 15:14:37 +02:00
7b60ab3df7
gnu: r-circlize: Update to 0.4.4.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
2018-06-13 15:14:37 +02:00
693b4d0ba5
gnu: r-globaloptions: Update to 0.1.0.
...
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
2018-06-13 15:14:37 +02:00
846325a8d8
gnu: Add r-writexl.
...
* gnu/packages/cran.scm (r-writexl): New variable.
2018-06-13 15:14:37 +02:00
546fc4aa55
gnu: Add r-hdf5r.
...
* gnu/packages/cran.scm (r-hdf5r): New variable.
2018-06-13 15:14:37 +02:00
0c9868aa5b
gnu: Add r-nbclust.
...
* gnu/packages/cran.scm (r-nbclust): New variable.
2018-06-13 11:51:28 +02:00
f22bfee945
gnu: Add r-factoextra.
...
* gnu/packages/cran.scm (r-factoextra): New variable.
2018-06-13 11:51:28 +02:00
e83841a296
gnu: Add r-factominer.
...
* gnu/packages/cran.scm (r-factominer): New variable.
2018-06-13 11:51:28 +02:00
cbf6017d83
gnu: Add r-flashclust.
...
* gnu/packages/cran.scm (r-flashclust): New variable.
2018-06-13 11:51:28 +02:00
141e43bd4e
gnu: Add r-ellipse.
...
* gnu/packages/cran.scm (r-ellipse): New variable.
2018-06-13 11:51:28 +02:00
5cbaaee83f
gnu: Add r-ggpubr.
...
* gnu/packages/cran.scm (r-ggpubr): New variable.
2018-06-13 11:51:28 +02:00
5219c5c585
gnu: Add r-ggsignif.
...
* gnu/packages/cran.scm (r-ggsignif): New variable.
2018-06-13 11:51:28 +02:00
85df1a8631
gnu: Add r-ggsci.
...
* gnu/packages/cran.scm (r-ggsci): New variable.
2018-06-13 11:51:28 +02:00
0c6ade0be6
gnu: openrct2: Update to 0.2.0.
...
* gnu/packages/games.scm (openrct2-title-sequences): New variable.
* gnu/packages/games.scm (openrct2-objects): New variable.
* gnu/packages/games.scm (openrct2): Update to 0.2.0.
[arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and
'get-rid-of-errors.
[inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences.
[native-inputs]: Add gcc@7.
2018-06-13 11:33:03 +02:00
14618a1ebb
gnu: vkquake: Update to 1.00.0.
...
* gnu/packages/games.scm (vkquake): Update to 1.00.0.
2018-06-13 08:47:14 +02:00
4b3480d62f
gnu: cheese: Update to 3.28.0.
...
* gnu/packages/gnome.scm (cheese): Update to 3.28.0.
2018-06-13 08:44:02 +02:00
faccae1c37
gnu: mesa: Update to 18.1.1.
...
* gnu/packages/gl.scm (mesa): Update to 18.1.1.
[inputs]: Change llvm-3.9.1 to llvm.
[arguments]: Remove substitution for removed file.
2018-06-13 06:46:15 +02:00
3a30ae05ae
gnu: openimageio: Update to 1.7.19.
...
* gnu/packages/graphics.scm (openimageio): Update to 1.7.19.
2018-06-13 00:31:58 -04:00
502a822dfd
gnu: tor: Update to 0.3.3.7.
...
* gnu/packages/tor.scm (tor): Update to 0.3.3.7.
2018-06-12 22:59:29 +02:00
b5792b9cb8
gnu: Add qtwebglplugin.
...
* gnu/packages/qt.scm (qtwebglplugin): New variable.
Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-12 22:47:01 +02:00
359e30c9ea
gnu: Add qtwebview.
...
* gnu/packages/qt.scm (qtwebview): New variable.
2018-06-12 22:47:01 +02:00
bea07c7f55
gnu: python-llfuse: Update to 1.3.3.
...
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
2018-06-12 15:30:30 -04:00
67cb662a31
gnu: mes: Update to 0.15.
...
* gnu/packages/mes.scm (mes): Update to 0.15.
2018-06-12 19:21:10 +02:00
6921e95ae8
gnu: mame: Fix renaming executable.
...
* gnu/packages/emulators.scm (mame)[arguments]: Only rename 'mame64' to
'mame' when 'mame64' exists.
2018-06-12 19:08:47 +03:00
a9e7d6564b
gnu: multipath-tools: Fix build.
...
(multipath-tools)[arguments]: Pass -n to gzip to avoid timestamp related
warnings causing build failures.
2018-06-12 16:13:16 +02:00
90977eb55e
gnu: guile-bytestructures: Update to 1.0.3.
...
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.3.
(guile-git)[arguments]: Remove. The workaround for
<https://github.com/TaylanUB/scheme-bytestructures/issues/30 > is no
longer needed.
2018-06-12 15:23:34 +02:00
b5edc47912
gnu: flann: Fix builds with CMake >= 3.11.
...
* gnu/packages/patches/flann-cmake-3.11.patch: New file.
* gnu/packages/maths.scm (flann)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-12 15:23:34 +02:00
feed5194b1
gnu: python-urwid, python2-urwid: Update to 2.0.1.
...
* gnu/packages/python.scm (python-urwid, python2-urwird): Update to 2.0.1.
2018-06-12 20:51:32 +08:00
66266d3290
gnu: borg: Update to 1.1.6.
...
* gnu/packages/backup.scm (borg): Update to 1.1.6.
[arguments]: Remove the 'adjust-msgpack-dependency' phase because it has been
adopted upstream.
2018-06-12 08:28:21 -04:00
e68e4a906f
gnu: fabric: Disable problematic tests.
...
Reported by Ricardo Wurmus <rekado@elephly.net> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=26647#8 >.
* gnu/packages/admin.scm (fabric): Add custom check phase to disable two tests.
2018-06-12 19:47:12 +08:00
7714a06943
gnu: Add skopeo.
...
* gnu/packages/virtualization.scm (skopeo): New variable.
2018-06-12 19:31:18 +08:00
efdaf8def0
gnu: Add umoci.
...
* gnu/packages/virtualization.scm (umoci): New variable.
2018-06-12 19:30:52 +08:00
3d39130926
gnu: Add libostree.
...
* gnu/packages/package-management.scm (libostree): New variable.
2018-06-12 19:28:18 +08:00
c71cc133ec
gnu: vim-syntastic: Update to 3.9.0.
...
* gnu/packages/vim.scm (vim-syntastic): Update to 3.9.0.
[source]: Switch to git checkout.
2018-06-12 11:16:06 +03:00
261348e20d
gnu: vim-fugitive: Update to 2.3.
...
* gnu/packages/vim.scm (vim-fugitive): Update to 2.3.
2018-06-12 11:16:06 +03:00
35a7e5742f
gnu: vim-airline: Update to 0.9.
...
* gnu/packages/vim.scm (vim-airline): Update to 0.9.
[source]: Switch to git checkout.
2018-06-12 11:16:05 +03:00
b37404740e
gnu: speedtest-cli: Update to 2.0.2.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 2.0.2.
[source]: Switch to a git checkout.
2018-06-12 11:16:05 +03:00
5b47ea9462
gnu: font-gnu-unifont: Update to 11.0.01.
...
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.01.
2018-06-12 11:16:02 +03:00
14cb7966ba
gnu: wine-staging: Update to 3.10.
...
* gnu/packages/wine.scm (wine-staging): Update to 3.10.
2018-06-12 10:15:03 +02:00
32872458a6
gnu: wine-staging-patchset-data: Update to 3.10.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.10.
2018-06-12 10:15:03 +02:00
95d9d95a04
gnu: linux-libre: Update to 4.17.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.1.
(%linux-libre-hash): Update hash.
2018-06-12 02:57:20 -04:00
f3ad05efd9
gnu: linux-libre@4.14: Update to 4.14.49.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.49.
(%linux-libre-4.14-hash): Update hash.
2018-06-12 02:56:19 -04:00
2c5f8aad92
gnu: Add emacs-puppet-mode.
...
* gnu/packages/emacs.scm (emacs-puppet-mode): New variable.
2018-06-12 07:49:42 +01:00
e7a25d2ae7
gnu: elixir: Enable more tests and remove patch.
...
Previously, due to issues in the erlang package, many tests would fail, and
the package would also nondeterministically fail to build. This is now
fixed (by patching occurrences of /bin/sh in the erlang package), so all the
tests can be run.
* gnu/packages/elixir.scm (elixir)[source]: Remove patches.
[arguments]: Remove the fix-or-disable-tests phase. Add a new set-home phase
to set the HOME environment variable prior to running the tests.
* gnu/packages/patches/elixir-disable-failing-tests.patch: Delete this file.
* gnu/local.mk: Remove now deleted patch.
2018-06-12 07:46:18 +01:00
b5453aa7c3
gnu: erlang: Patch occurrences of /bin/sh in the source.
...
Previously, the elixir package would often fail to build, as running :os:cmd
would fail, as /bin/sh doesn't exist when building the elixir package. These
changes fix that issue.
* gnu/packages/erlang.scm (erlang)[arguments]: Add new patch-/bin/sh phase to
replace hardcoded references to /bin/sh with a file in the store.
2018-06-12 07:44:05 +01:00
9b25e1d124
gnu: erlang: Delete the bootstrap phase.
...
This fails for the erlang package, as the gnu build system attempts to execute
the bootstrap directory.
* gnu/packages/erlang.scm (erlang)[arguments]: Delete the bootstrap phase.
2018-06-12 07:43:59 +01:00
cd50b9f009
gnu: tzdata-for-tests: Downgrade to 2018d.
...
* gnu/packages/base.scm (tzdata-for-tests): Don't inherit source and inputs
from TZDATA.
2018-06-12 00:05:18 +02:00
a032b4454b
Merge branch 'master' into staging
2018-06-11 23:52:15 +02:00
b5724230fe
gnu: bluez: Update to 5.50.
...
* gnu/packages/linux.scm (bluez): Update to 5.50.
2018-06-11 23:45:45 +02:00
ffc43471af
gnu: meson: Update to 0.46.1.
...
* gnu/packages/build-tools.scm (meson): Update to 0.46.1.
2018-06-11 23:45:43 +02:00
e688bfc033
gnu: libepoxy: Update to 1.5.2.
...
* gnu/packages/gl.scm (libepoxy): Update to 1.5.2.
2018-06-11 23:45:16 +02:00
4bbd92076a
gnu: libdmx: Update to 1.1.4.
...
* gnu/packages/xorg.scm (libdmx): Update to 1.1.4.
2018-06-11 23:33:45 +02:00
bd1efded37
gnu: xkbcomp: Update to 1.4.2.
...
* gnu/packages/xorg.scm (xkbcomp-intermediate): Update to 1.4.2.
2018-06-11 23:33:45 +02:00
6321ce42ab
gnu: xf86-video-vmware: Update to 13.3.0.
...
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.3.0.
2018-06-11 23:23:10 +02:00
4276b0dc1e
gnu: xf86-input-evdev: Update to 2.10.6.
...
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.6.
2018-06-11 23:15:36 +02:00
7b7e30ca29
gnu: xf86-input-synaptics: Update to 1.9.1.
...
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.9.1.
2018-06-11 23:13:26 +02:00
8cfcb6ba2a
gnu: xf86-video-fbdev: Update to 0.5.0.
...
* gnu/packages/xorg.scm (xf86-video-fbdev): Update to 0.5.0.
2018-06-11 23:10:04 +02:00
b63f6c0192
gnu: python2: Deprecate "python@2".
...
* gnu/packages/python.scm (python2-called-python): New variable.
2018-06-11 18:23:24 +02:00
4d65c1c304
gnu: wine-staging: Add vkd3d support.
...
* gnu/packages/wine.scm (wine-staging)[inputs]: Add vkd3d.
2018-06-11 18:22:10 +02:00
85c7f29a25
gnu: Add vkd3d.
...
* gnu/packages/vulkan.scm (vkd3d): New variable.
2018-06-11 18:22:10 +02:00
7f54065487
gnu: shaderc: Update to be8e087.
...
* gnu/packages/vulkan.scm (shaderc): Update to be8e087.
[arguments]: Enable tests.
[inputs]: Add googletest.
2018-06-11 18:22:10 +02:00
fcfef82592
gnu: glslang: Update to 32d3ec3.
...
* gnu/packages/vulkan.scm (glslang): Update to 32d3ec3.
2018-06-11 18:22:10 +02:00
ba10e0b8e1
gnu: spirv-tools: Update to fe2fbee.
...
* gnu/packages/vulkan.scm (spirv-tools): Update to fe2fbee.
[arguments]: Disable tests. Remove "-DCMAKE_INSTALL_LIBDIR" configure-flag.
2018-06-11 18:22:10 +02:00
c7c86de669
gnu: spirv-headers: Update to 3ce3e49.
...
* gnu/packages/vulkan.scm (spirv-headers): Update to 3ce3e49. Use INVOKE.
2018-06-11 18:22:10 +02:00
6da97043ea
gnu: Add ovmf-arm.
...
* gnu/packages/firmware.scm (ovmf-arm): New variable.
2018-06-11 19:16:23 +03:00
cb97be5f83
gnu: Add ovmf-aarch64.
...
* gnu/packages/firmware.scm (ovmf-aarch64): New variable.
2018-06-11 19:16:23 +03:00
ff3fd83969
gnu: libraw: Update to 0.18.12 [security fixes].
...
* gnu/packages/photo.scm (libraw): Update to 0.18.12.
2018-06-11 18:08:21 +02:00
9526d86141
gnu: libndp: Update to 1.7.
...
* gnu/packages/networking.scm (libndp): Update to 1.7.
2018-06-11 18:05:54 +02:00
f24cfb6cc3
gnu: webkitgtk: Update to 2.20.3 [security fixes].
...
Fixes CVE-2018-4190, CVE-2018-4199, CVE-2018-4218, CVE-2018-4222,
CVE-2018-4232, CVE-2018-4233, CVE-2018-4246 and CVE-2018-11646.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.3.
2018-06-11 17:56:56 +02:00
6e5a6e641a
gnu: efivar: Update to 36.
...
* gnu/packages/linux.scm (efivar): Update to 36.
2018-06-11 17:54:31 +02:00
21a21c20da
gnu: ldb: Delete bundled libraries from the source.
...
* gnu/packages/samba.scm (ldb)[source](snippet): New field.
2018-06-11 17:54:30 +02:00
4ee30d6aa2
gnu: ldb: Update to 1.4.0.
...
* gnu/packages/samba.scm (ldb): Update to 1.4.0.
[inputs]: Add LMDB.
2018-06-11 17:54:30 +02:00
8bf7f741e9
gnu: Add Add emacs-wgrep-helm.
...
* gnu/packages/emacs.scm (emacs-wgrep-helm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
50a1f9264d
gnu: Add emacs-package-lint.
...
* gnu/packages/emacs.scm (emacs-package-lint): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
00f3774067
gnu: Add emacs-image+.
...
* gnu/packages/emacs.scm (emacs-image+): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
bdfebc4b74
gnu: Add emacs-helm-pass.
...
* gnu/packages/emacs.scm (emacs-helm-pass): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
2f3aa1d309
gnu: Add emacs-helm-mu.
...
* gnu/packages/emacs.scm (emacs-helm-mu): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
1e75852629
gnu: Add emacs-helm-ls-git.
...
* gnu/packages/emacs.scm (emacs-helm-ls-git): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
76a2b27897
gnu: Add go-github-com-spf13-pflag.
...
* gnu/packages/golang.scm (go-github-com-spf13-pflag): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
bcb2179085
gnu: Add go-github-com-jonboulle-clockwork.
...
* gnu/packages/golang.scm (go-github-com-jonboulle-clockwork): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
e8cdf560b0
gnu: Add go-github-com-gorilla-mux.
...
* gnu/packages/golang.scm (go-github-com-gorilla-mux): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
14299d21f2
gnu: iproute2: Update to 4.17.0.
...
* gnu/packages/linux.scm (iproute): Update to 4.17.0.
2018-06-11 14:08:31 +02:00
41ea698a4b
gnu: libfilezilla: Update to 0.12.3.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.3.
2018-06-11 14:08:24 +02:00
e0cc7f669b
gnu: emacs-emacsql: Replace mysql with mariadb input.
...
* gnu/packages/emacs.scm (emacs-emacsql)[inputs]: Replace 'mysql' with
'mariadb'.
2018-06-11 11:47:50 +03:00
8b3aea9d9e
gnu: guix: Update to 77a1aac.
...
* gnu/packages/package-management.scm (guix): Update to 77a1aac
2018-06-10 23:32:00 +02:00
670a5e5430
gnu: keepalived: Install info documentation.
...
* gnu/packages/cluster.scm (keepalived)[arguments]: Add phases 'build-info'
and 'install-info'.
[native-inputs]: Add texinfo.
2018-06-10 23:42:14 +08:00
af09dabf70
gnu: Add keepalived.
...
* gnu/packages/cluster.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-06-10 22:57:01 +08:00
4dd1fb79f7
gnu: Add libnfnetlink.
...
* gnu/packages/linux.scm (libnfnetlink): New variable.
2018-06-10 22:57:01 +08:00
fc51c11b9d
gnu: mumble: Fix build with Boost 1.66.
...
Fixes <https://bugs.gnu.org/31775 >.
* gnu/packages/patches/mumble-1.2.19-abs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/telephony.scm (mumble)[source]: Add it.
2018-06-10 16:03:35 +02:00
e6c8199b66
gnu: nix: Update to 2.0.4.
...
* gnu/packages/package-management.scm (nix): Update to 2.0.4.
2018-06-10 21:38:32 +08:00
1bfde769f6
gnu: musescore: Fix build against Qt 5.11.
...
* gnu/packages/music.scm (musescore)[arguments]: Remove Webkit support, since
it is replaced with Qt WebEngine in Qt 5.11. Add missing include line.
[inputs]: Remove "qtwekbit".
2018-06-10 13:47:25 +02:00
09b21b77cc
gnu: heimdal: Update to 7.5.0.
...
* gnu/packages/kerberos.scm (heimdal): Update to 7.5.0.
[source]: Update source uri. Remove patches.
[arguments]: Adjust #:configure-flags and build phases accordingly.
[inputs]: Add sqlite.
[native-inputs]: Add texinfo and unzip.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-10 16:00:45 +08:00
b7e2fcf05e
gnu: milkytracker: Update to 1.02.00.
...
* gnu/packages/music.scm (milkytracker): Update to 1.02.00.
2018-06-09 18:32:47 -04:00
65956ad352
gnu: GnuPG 1.4: Fix CVE-2018-12020.
...
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg-1)[source]: Use it.
2018-06-09 17:50:03 -04:00
5aa4ea6a2b
gnu: Add maven-resolver-provider.
...
* gnu/packages/maven.scm (maven-resolver-provider): New variable.
2018-06-09 23:25:35 +02:00
b218504026
gnu: Add maven-shared-utils.
...
gnu/packages/maven.scm (maven-shared-utils): New variable.
2018-06-09 23:25:26 +02:00
18736663ed
gnu: Add maven-repository-metadata.
...
* gnu/packages/maven.scm (maven-repository-metadata): New variable.
2018-06-09 23:25:24 +02:00
Julien Lepiller