Commit Graph

26222 Commits

Author SHA1 Message Date
Marius Bakke 9526d86141
gnu: libndp: Update to 1.7.
* gnu/packages/networking.scm (libndp): Update to 1.7.
2018-06-11 18:05:54 +02:00
Marius Bakke f24cfb6cc3
gnu: webkitgtk: Update to 2.20.3 [security fixes].
Fixes CVE-2018-4190, CVE-2018-4199, CVE-2018-4218, CVE-2018-4222,
CVE-2018-4232, CVE-2018-4233, CVE-2018-4246 and CVE-2018-11646.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.3.
2018-06-11 17:56:56 +02:00
Marius Bakke 6e5a6e641a
gnu: efivar: Update to 36.
* gnu/packages/linux.scm (efivar): Update to 36.
2018-06-11 17:54:31 +02:00
Marius Bakke 21a21c20da
gnu: ldb: Delete bundled libraries from the source.
* gnu/packages/samba.scm (ldb)[source](snippet): New field.
2018-06-11 17:54:30 +02:00
Marius Bakke 4ee30d6aa2
gnu: ldb: Update to 1.4.0.
* gnu/packages/samba.scm (ldb): Update to 1.4.0.
[inputs]: Add LMDB.
2018-06-11 17:54:30 +02:00
Pierre Neidhardt 8bf7f741e9
gnu: Add Add emacs-wgrep-helm.
* gnu/packages/emacs.scm (emacs-wgrep-helm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt 50a1f9264d
gnu: Add emacs-package-lint.
* gnu/packages/emacs.scm (emacs-package-lint): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt 00f3774067
gnu: Add emacs-image+.
* gnu/packages/emacs.scm (emacs-image+): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt bdfebc4b74
gnu: Add emacs-helm-pass.
* gnu/packages/emacs.scm (emacs-helm-pass): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt 2f3aa1d309
gnu: Add emacs-helm-mu.
* gnu/packages/emacs.scm (emacs-helm-mu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt 1e75852629
gnu: Add emacs-helm-ls-git.
* gnu/packages/emacs.scm (emacs-helm-ls-git): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Rouby Pierre-Antoine 76a2b27897
gnu: Add go-github-com-spf13-pflag.
* gnu/packages/golang.scm (go-github-com-spf13-pflag): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine bcb2179085
gnu: Add go-github-com-jonboulle-clockwork.
* gnu/packages/golang.scm (go-github-com-jonboulle-clockwork): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine e8cdf560b0
gnu: Add go-github-com-gorilla-mux.
* gnu/packages/golang.scm (go-github-com-gorilla-mux): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Tobias Geerinckx-Rice 14299d21f2
gnu: iproute2: Update to 4.17.0.
* gnu/packages/linux.scm (iproute): Update to 4.17.0.
2018-06-11 14:08:31 +02:00
Tobias Geerinckx-Rice 41ea698a4b
gnu: libfilezilla: Update to 0.12.3.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.3.
2018-06-11 14:08:24 +02:00
Oleg Pykhalov e0cc7f669b
gnu: emacs-emacsql: Replace mysql with mariadb input.
* gnu/packages/emacs.scm (emacs-emacsql)[inputs]: Replace 'mysql' with
'mariadb'.
2018-06-11 11:47:50 +03:00
Ludovic Courtès 8b3aea9d9e
gnu: guix: Update to 77a1aac.
* gnu/packages/package-management.scm (guix): Update to 77a1aac.
2018-06-10 23:32:00 +02:00
宋文武 670a5e5430
gnu: keepalived: Install info documentation.
* gnu/packages/cluster.scm (keepalived)[arguments]: Add phases 'build-info'
and 'install-info'.
[native-inputs]: Add texinfo.
2018-06-10 23:42:14 +08:00
宋文武 af09dabf70
gnu: Add keepalived.
* gnu/packages/cluster.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-06-10 22:57:01 +08:00
宋文武 4dd1fb79f7
gnu: Add libnfnetlink.
* gnu/packages/linux.scm (libnfnetlink): New variable.
2018-06-10 22:57:01 +08:00
Danny Milosavljevic fc51c11b9d
gnu: mumble: Fix build with Boost 1.66.
Fixes <https://bugs.gnu.org/31775>.

* gnu/packages/patches/mumble-1.2.19-abs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/telephony.scm (mumble)[source]: Add it.
2018-06-10 16:03:35 +02:00
宋文武 e6c8199b66
gnu: nix: Update to 2.0.4.
* gnu/packages/package-management.scm (nix): Update to 2.0.4.
2018-06-10 21:38:32 +08:00
Nicolas Goaziou 1bfde769f6
gnu: musescore: Fix build against Qt 5.11.
* gnu/packages/music.scm (musescore)[arguments]: Remove Webkit support, since
  it is replaced with Qt WebEngine in Qt 5.11.  Add missing include line.
[inputs]: Remove "qtwekbit".
2018-06-10 13:47:25 +02:00
Alex Vong 09b21b77cc
gnu: heimdal: Update to 7.5.0.
* gnu/packages/kerberos.scm (heimdal): Update to 7.5.0.
[source]: Update source uri.  Remove patches.
[arguments]: Adjust #:configure-flags and build phases accordingly.
[inputs]: Add sqlite.
[native-inputs]: Add texinfo and unzip.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
  gnu/packages/patches/heimdal-CVE-2017-11103.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-10 16:00:45 +08:00
Kei Kebreau b7e2fcf05e
gnu: milkytracker: Update to 1.02.00.
* gnu/packages/music.scm (milkytracker): Update to 1.02.00.
2018-06-09 18:32:47 -04:00
Leo Famulari 65956ad352
gnu: GnuPG 1.4: Fix CVE-2018-12020.
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg-1)[source]: Use it.
2018-06-09 17:50:03 -04:00
Julien Lepiller 5aa4ea6a2b
gnu: Add maven-resolver-provider.
* gnu/packages/maven.scm (maven-resolver-provider): New variable.
2018-06-09 23:25:35 +02:00
Julien Lepiller b218504026
gnu: Add maven-shared-utils.
gnu/packages/maven.scm (maven-shared-utils): New variable.
2018-06-09 23:25:26 +02:00
Julien Lepiller 18736663ed
gnu: Add maven-repository-metadata.
* gnu/packages/maven.scm (maven-repository-metadata): New variable.
2018-06-09 23:25:24 +02:00
Julien Lepiller 90fe8797cd
gnu: Add maven-resolver-impl.
* gnu/packages/maven.scm (maven-resolver-impl): New variable.
2018-06-09 23:25:21 +02:00
Julien Lepiller 516db3b97a
gnu: Add maven-model-builder.
* gnu/packages/maven.scm (maven-model-builder): New variable.
2018-06-09 23:25:18 +02:00
Julien Lepiller 3a5572ae76
gnu: Add maven-settings-builder.
* gnu/packages/maven.scm (maven-settings-builder): New variable.
2018-06-09 23:25:16 +02:00
Julien Lepiller 18110e45a6
gnu: Add maven-settings.
* gnu/packages/maven.scm (maven-settings): New variable.
2018-06-09 23:25:15 +02:00
Julien Lepiller f084641a01
gnu: Add maven-builder-support.
* gnu/packages/maven.scm (maven-builder-support): New variable.
2018-06-09 23:25:13 +02:00
Julien Lepiller d55503a6ab
gnu: Add maven-model.
* gnu/packages/maven.scm (maven-model): New variable.
2018-06-09 23:25:11 +02:00
Julien Lepiller 458687d586
gnu: Add maven-artifact.
* gnu/packages/maven.scm (maven-artifact): New variable.
* gnu/packages/patches/maven-generate-component-xml.patch: New file.
* gnu/packages/patches/maven-generate-javax-inject-named.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-06-09 23:24:52 +02:00
Julien Lepiller 816db9668c
gnu: po4a: Update to 0.53.
* gnu/packages/gettext.scm (po4a): Update to 0.53.
[source]: Update to newer github source location.
[arguments]: Disable two failing tests.
2018-06-09 23:08:13 +02:00
Efraim Flashner 8fc55f36c4
gnu: terminology: Update to 1.2.1.
* gnu/packages/enlightenment.scm (terminology): Update to 1.2.1.
2018-06-09 23:01:17 +03:00
Efraim Flashner 216c726673
gnu: gnupg: Update to 2.2.8 (fixes CVE-2018-12020).
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.8.
2018-06-09 22:46:22 +03:00
Christopher Baines 5bf37e9c38
gnu: openttd: Add patch to fix compilation.
* gnu/packages/games.scm (openttd)[source]: Add a unreleased upstream patch to
fix building OpenTTD with ICU 61.
2018-06-09 12:25:32 +01:00
Christopher Baines aa7587633b
gnu: rhythmbox: Add a unreleased patch from upstream.
* gnu/packages/gnome.scm (rhythmbox)[source]: Add patch from the upstream Git
repository, as without this, the package fails to build.
2018-06-09 11:11:28 +01:00
宋文武 d6fb0985a6
gnu: btrfs-progs: Fix build by disabling tests.
* gnu/packages/linux.scm (btrfs-progs)[#:arguments]: Add '#:tests? #f'.
2018-06-09 17:18:27 +08:00
宋文武 927846b3ab
gnu: lxc: Update to 3.0.1.
* gnu/packages/virtualization.scm (lxc): Update to 3.0.1.
2018-06-09 15:45:16 +08:00
Rutger Helling 945b119fac
gnu: nzbget: Update to 20.0.
* gnu/packages/networking.scm (nzbget): Update to 20.0.
2018-06-09 02:30:07 +02:00
Nicolas Goaziou c8b2fd2866
gnu: mame: New variable.
* gnu/packages/emulators.scm (mame): New variable.
2018-06-09 00:20:00 +02:00
Nicolas Goaziou d597dda6e0
gnu: asio: New variable.
* gnu/packages/networking.scm (asio): New variable.
2018-06-09 00:20:00 +02:00
Oleg Pykhalov da23cc000e
gnu: Add emacs-ivy-yasnippet.
* gnu/packages/emacs.scm (emacs-ivy-yasnippet): New public variable.
2018-06-08 23:19:38 +03:00
Gábor Boskovits c315d37058
gnu: exim: Add libnsl input.
* gnu/packages/mail.scm (exim)[inputs]: Add libnsl.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2018-06-08 22:20:28 +03:00
Oleg Pykhalov ca82bdfdfb
gnu: twitchy: Install 'rofi-twitchy'.
* gnu/packages/video.scm (twitchy): Install 'rofi-twitchy'.
2018-06-08 20:30:29 +03:00
Ricardo Wurmus cbc1c27b67
gnu: rcas-web: Update to 0.0.5.
* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.0.5.
2018-06-08 17:39:24 +02:00
Kei Kebreau 129948dcbd
gnu: debootstrap: Substitute chroot in 'patch-source' phase.
* gnu/packages/debian.scm (debootstrap)[arguments]: In 'patch-source' phase,
substitute chroot in the debootstrap script file.
[inputs]: Add coreutils.
2018-06-08 11:07:51 -04:00
Rouby Pierre-Antoine ad3a580716
gnu: hpcguix-web: Update to commit '87cb516'.
* gnu/packages/web.scm (hpcguix-web): Update to commit '87cb516'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:24 +02:00
Pierre Neidhardt daa9e89d56
gnu: Add emacs-helm-flycheck.
* gnu/packages/emacs.scm (emacs-helm-flycheck): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:24 +02:00
Pierre Neidhardt 49fd039217
gnu: Add emacs-helm-exwm.
* gnu/packages/emacs.scm (emacs-helm-exwm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt 5a949f5b30
gnu: Add emacs-helm-emms.
* gnu/packages/emacs.scm (emacs-helm-emms): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt 0b4e4efe97
gnu: Add emacs-helm-descbinds.
* gnu/packages/emacs.scm (emacs-helm-descbinds): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt 3540c6eb2b
gnu: Add emacs-helm-company.
* gnu/packages/emacs.scm (emacs-helm-company): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt 2dcea9b446
gnu: Add emacs-google-translate.
* gnu/packages/emacs.scm (emacs-google-translate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt a62d872fdf
gnu: Add emacs-gif-screencast.
* gnu/packages/emacs.scm (emacs-gif-screencast): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Tobias Geerinckx-Rice fafeeaa233
gnu: ruby-rack-protection: Update to 2.0.2.
* gnu/packages/ruby.scm (ruby-rack-protection): Update to 2.0.2.
2018-06-08 16:00:18 +02:00
Tobias Geerinckx-Rice d2a48984fc
gnu: r-fastcluster: Update to 1.1.25.
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.25.
2018-06-08 16:00:18 +02:00
Tobias Geerinckx-Rice a1eabab1a3
gnu: opensmtpd: Clarify phase name.
* gnu/packages/mail.scm (opensmtpd)[arguments]: Rename
‘install-compatibilitymode’ to ‘install-compatibility-links’ and avoid
needless abbrevs while at it.
2018-06-08 16:00:17 +02:00
Tobias Geerinckx-Rice 19fed04915
gnu: opensmtpd: Patch FHS assumptions.
This fixes the following failure...

  # smtpctl show message 9275c3fbeccbae93
  execl: No such file or directory

...due to the absence of ‘/bin/cat’ on GuixSD.

* gnu/packages/mail.scm (opensmtpd)[arguments]: Add
‘patch-FHS-file-names’ phase.
2018-06-08 16:00:17 +02:00
Oleg Pykhalov 2dfb9bbf23
gnu: duplicity: Update to 0.7.17.
* gnu/packages/backup.scm (duplicity): Update to 0.7.17.
2018-06-08 16:25:44 +03:00
Oleg Pykhalov c0888cefdf
gnu: Add python-fasteners.
* gnu/packages/python.scm (python-fasteners, python2-fasteners): New
variables.
2018-06-08 16:25:44 +03:00
Ludovic Courtès 849a1399ca
gnu: doxygen: Work around GCC ICE on armhf-linux.
Reported by Mark H Weaver <mhw@netris.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31708#10>.

* gnu/packages/patches/doxygen-gcc-ice.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/documentation.scm (doxygen)[inputs]: Add "gcc-ice-patch"
on armhf-* only.
[arguments]: Add 'apply-gcc-patch' phase on armhf-* only.
2018-06-08 15:23:39 +02:00
宋文武 cd8ece22bf
gnu: redis: Update to 4.0.9.
* gnu/packages/database.scm (redis): Update to 4.0.9.
2018-06-08 20:27:30 +08:00
Paul Garlick 0b88f7e7a7
gnu: ikiwiki: Add inputs for CGI script and remove duplicate input.
* gnu/packages/web.scm (ikiwiki)[inputs]: Add perl-cgi-formbuilder and
perl-db-file.  Remove perl-uri duplicate.  Sort 'perl-*' inputs
alphabetically.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-08 20:27:30 +08:00
Paul Garlick f52de1e17f
gnu: Add perl-cgi-formbuilder.
* gnu/packages/web.scm (perl-cgi-formbuilder): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-08 20:27:30 +08:00
Mark H Weaver 0b2fd1600f
gnu: linux-libre@4.9: Update to 4.9.107.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.107.
2018-06-07 23:38:28 -04:00
Mark H Weaver b09dc3b911
gnu: linux-libre@4.4: Update to 4.4.136.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.136.
2018-06-07 23:37:46 -04:00
Tobias Geerinckx-Rice 20860819d6
gnu: ruby-asciidoctor: Update description.
Synchronise with upstream README.

* gnu/packages/ruby.scm (ruby-asciidoctor)[description]: Add PDF.
2018-06-07 23:58:26 +02:00
Tobias Geerinckx-Rice 4ee41a6ac1
gnu: inxi: Fix up synopsis & description.
* gnu/packages/admin.scm (inxi)[synopsis]: Fix typo.
[description]: Use @code{}.
2018-06-07 23:58:26 +02:00
Tobias Geerinckx-Rice 7a83eb37ad
gnu: libngspice: Update to 28.
* gnu/packages/engineering.scm (libngspice): Update to 28.
2018-06-07 23:58:25 +02:00
Tobias Geerinckx-Rice ec425ca3a6
gnu: libngspice: Use C-locale date format.
* gnu/packages/engineering.scm (libngspice): Use a more standard
(C-locale) date format when forging timestamps.
2018-06-07 23:57:39 +02:00
Tobias Geerinckx-Rice 10ee03c1df
gnu: python-pyxdg: Return #t from phases.
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-06-07 23:57:39 +02:00
Tobias Geerinckx-Rice 5f82a9d5cc
gnu: seabios: Return #t from all phases.
* gnu/packages/firmware.scm (seabios)[arguments]: Return #t from
the ‘install’ phase.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice edf075987c
gnu: gnuastro: Add TIFF support.
This adds ~3.6 MiB (3.6%) to gnuastro's now-103.9 MiB closure.

* gnu/packages/astronomy.scm (gnuastro)[inputs]: Add libtiff and zlib.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice 33031faa4e
gnu: xmlsec: Update to 1.2.26.
* gnu/packages/xml.scm (xmlsec): Update to 1.2.26.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice 6d727bf4c7
gnu: xcalib: Update to 0.10.
* gnu/packages/xdisorg.scm (xcalib): Update to 0.10.
[home-page]: Switch to new upstream.
[source]: Use GIT-FETCH.  Add xcalib-update-man-page.patch.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old build system's arguments.
[inputs]: Add libxrandr.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice d35135fa9e
gnu: perl-net-http: Update to 6.18.
* gnu/packages/web.scm (perl-net-http): Update to 6.18.
2018-06-07 23:57:37 +02:00
Tobias Geerinckx-Rice c727262d5f
gnu: perl-cgi: Update to 4.38.
* gnu/packages/web.scm (perl-cgi): Update to 4.38.
2018-06-07 23:57:37 +02:00
Danny Milosavljevic 5e88194661
gnu: qucs: Patch bootstrapping scripts.
* gnu/packages/engineering.scm (qucs)[arguments]<#:phases>[patch-bootstrap]:
New phase.
2018-06-07 23:23:40 +02:00
Theodoros Foradis 394b89ae04
gnu: qucs-s: Update to 0.0.20.
* gnu/packages/engineering.scm (qucs-s): Update to 0.0.20.
[arguments]: Modify patch-paths phase to work with version 0.0.20.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis fc3c88ec9c
gnu: lapack-3.5: Delete package.
* gnu/packages/maths.scm (lapack-3.5): Delete package.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis ac04601a82
gnu: xyce-serial: Update to 6.8.
* gnu/packages/engineering.scm (xyce-serial): Update to 6.8.
[inputs]: Replace lapack-3.5 with lapack.
* gnu/packages/engineering.scm (xyce-prallel):
[arguments]: Update configure flags to work with 6.8 version.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis d73482b408
gnu: trilinos-serial-xyce: Update to 12.12.1.
* gnu/packages/engineering.scm (trilinos-serial-xyce): Update to 12.12.1.
[arguments]: Add delete-tribits phase.
[inputs]: Replace lapack-3.5 with lapack.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis ecf8d2a935
gnu: libngspice: Update to 27.
* gnu/packages/engineering.scm (libngspice): Update to 27.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis 4f12a62d18
gnu: qucs: Build from git to fix bug.
* gnu/packages/engineering.scm (qucs): Add TODO comment.
[source]: Use git commit b4f27d9.
[native-inputs]: Add autoconf, automake, flex and bison.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:34 +02:00
Ricardo Wurmus bcc2e0ed2e
gnu: r-rcas: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.6.0.
[source]: Fetch from bioconductor.
[native-inputs]: Remove r-knitr.
[propagated-inputs]: Add r-biocgenerics, r-biostrings, r-cowplot, r-dbi,
r-ggseqlogo, r-knitr, r-pheatmap, r-proxy, r-rsqlite, and r-s4vectors.
2018-06-07 22:51:00 +02:00
Ricardo Wurmus e67acae706
gnu: Add r-ggseqlogo.
* gnu/packages/cran.scm (r-ggseqlogo): New variable.
2018-06-07 22:51:00 +02:00
Rutger Helling 8ec919404f
gnu: Add deprecated-package vulkan-icd-loader.
* gnu/packages/vulkan.scm (vulkan-icd-loader): New variable.
2018-06-07 13:34:13 +02:00
Efraim Flashner bb63502f0b
gnu: ovmf: Simplify build.
* gnu/packages/firmware.scm (ovmf)[arguments]: Change custom 'build-ia32
phase to replace 'build. Remove unneeded substitutions in 'configure,
'build and 'build-x64. Shorten 'build and 'build-x64 phases.
2018-06-07 12:20:47 +03:00
Ricardo Wurmus 6d095c4cab
gnu: star: Update to 2.6.0c.
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c.
[source]: Fetch from git.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus 54179e2463
gnu: libreoffice: Update to 6.0.5.1.
* gnu/packages/patches/libreoffice-icu.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.0.5.1.
[source]: Add patch.
[inputs]: Add libepubgen and libqxp.
[arguments]: Adjust "prepare-src" phase.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus e47e1f3311
gnu: orcus: Update to 0.13.4.
* gnu/packages/libreoffice.scm (orcus): Update to 0.13.4.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus a3f2425e5d
gnu: ixion: Update to 0.13.0.
* gnu/packages/libreoffice.scm (ixion): Update to 0.13.0.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus 4e4dcd476e
gnu: Add libqxp.
* gnu/packages/libreoffice.scm (libqxp): New variable.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus 38be0f4245
gnu: Add libepubgen.
* gnu/packages/libreoffice.scm (libepubgen): New variable.
2018-06-07 11:09:54 +02:00
Adam Zimmerman d6dd64af37
gnu: opensmtpd: Fix crash on table authentication.
* gnu/packages/patches/opensmtpd-fix-crash.patch: New patch.
* gnu/packages/mail.scm (opensmtpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-06-07 03:57:42 +02:00
Tobias Geerinckx-Rice 6acc671bef
gnu: jbig2dec: Update source and home page URIs.
The old downloads.ghostscript.com returns a bogus 200 response, while
the new home page lists a different source.

Reported by Gábor Boskovits <boskovits@gmail.com>.

* gnu/packages/image.scm (jbig2dec)[source, home-page]: Update URIs.
2018-06-07 03:57:41 +02:00
Nicolas Goaziou 4a007e2db9
gnu: scribus: Fix build.
* gnu/packages/scribus.scm (scribus)[arguments]: Re-introduce fix for
  "ImportError: No module named _sysconfigdata_nd".
2018-06-07 00:30:13 +02:00
Ricardo Wurmus 116ca65b58
Merge branch 'master' into core-updates 2018-06-06 22:43:37 +02:00
Nicolas Goaziou 25133ca172
gnu: colobot: Update to 0.1.11.1-alpha.
* gnu/packages/games.scm (colobot): Update to 0.1.11.1-alpha.
[native-inputs]: Update "colobot-data" and "colobot-music" to 0.1.11.1-alpha.
2018-06-06 19:16:21 +02:00
Nicolas Goaziou 89a651964a
gnu: scribus: Add "libzmf" dependency
* gnu/packages/scribus.scm (scribus)[inputs]: Add "libzmf".
2018-06-06 18:34:45 +02:00
Nicolas Goaziou fec8d80cd1
gnu: scribus: Update to 1.5.4.
* gnu/packages/scribus.scm (scribus): Update to 1.5.4.
[source]: Remove patches.
[arguments]: Remove `patch-source' phase.
2018-06-06 18:33:38 +02:00
Rutger Helling e6fcf903ec
gnu: vulkan-loader: Update URL and change name.
* gnu/packages/emulators.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/games.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/video.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/vulkan.scm (vulkan-loader): Rename from 'vulkan-icd-loader' to
'vulkan-loader'. Update URL and hash.
* gnu/packages/wine.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
2018-06-06 16:48:47 +02:00
Rutger Helling 7ea56cdec0
gnu: you-get: Update to 0.4.1077.
* gnu/packages/video.scm (you-get): Update to 0.4.1077.
2018-06-06 14:39:24 +02:00
Rutger Helling c7a2f7b999
gnu: diffoscope: Update to 95.
* gnu/packages/package-management.scm (diffoscope): Update to 95.
2018-06-06 14:39:24 +02:00
Rutger Helling 89fc8aef8c
gnu: epiphany: Update to 3.28.2.1.
* gnu/packages/gnome.scm (epiphany): Update to 3.28.2.1.
2018-06-06 14:39:24 +02:00
Rutger Helling f9036105e6
gnu: gnome-disk-utility: Update to 3.28.3.
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.28.3.
2018-06-06 14:39:23 +02:00
Rutger Helling 9cf329aecc
gnu: gnome-terminal: Update to 3.28.2.
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.28.2.
2018-06-06 14:39:23 +02:00
Rutger Helling 6a29c8d344
gnu: gedit: Update to 3.28.1.
* gnu/packages/gnome.scm (gedit): Update to 3.28.1.
2018-06-06 14:39:23 +02:00
Ricardo Wurmus e32db0fa0f
gnu: vigra: Disable broken test.
* gnu/packages/image.scm (vigra)[arguments]: Add phase "disable-broken-test";
enable parallel build.
2018-06-06 13:15:21 +02:00
Rutger Helling c648781cec
gnu: lynx: Update to 2.8.9dev.19.
* gnu/packages/web-browsers.scm (lynx): Update to 2.8.9dev.19.
2018-06-06 12:46:40 +02:00
Efraim Flashner 73c0e477e5
gnu: esmtp: Replace 'bootstrap phase.
* gnu/packages/mail.scm (esmtp)[arguments]: Use custom 'autoconf phase
to replace default 'bootstrap phase.
2018-06-06 13:11:50 +03:00
Efraim Flashner a34dfa249c
gnu: can-utils: Remove 'bootstrap phase.
* gnu/packages/networking.scm (can-utils)[arguments]: Remove unnecessary
'bootstrap phase.
2018-06-06 13:11:47 +03:00
Tobias Geerinckx-Rice 37b561e4ed
gnu: gerbv: Update to 2.6.2.
* gnu/packages/engineering.scm (gerbv): Update to 2.6.2.
[arguments]: Remove ‘autoconf’ phase...
[native-inputs]: ...and remove its dependencies.
2018-06-06 06:12:23 +02:00
Tobias Geerinckx-Rice d193903e0c
gnu: linsmith: Update to 0.99.31.
* gnu/packages/engineering.scm (linsmith): Update to 0.99.31.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice 6e3d48c207
gnu: linsmith: Use HTTPS home page.
* gnu/packages/engineering.scm (linsmith)[home-page]: Use HTTPS.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice 3b295d3f4b
gnu: python-lmdb: Update to 0.94.
* gnu/packages/databases.scm (python-lmdb): Update to 0.94.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice fcf29a7fbb
gnu: debootstrap: Update to 1.0.101.
* gnu/packages/debian.scm (debootstrap): Update to 1.0.101.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice 1a16b925f2
gnu: tomb: Update to 2.5.
* gnu/packages/crypto.scm (tomb): Update to 2.5.
[inputs, arguments]: Add util-linux for ‘findmnt’.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 115af78e32
gnu: cfitsio: Update to 3.450.
* gnu/packages/astronomy.scm (cfitsio): Update to 3.450.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 9566bb82e5
gnu: gnuastro: Update to 0.6.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.6.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 60b0c25222
gnu: wcslib: Fix build.
* gnu/packages/astronomy.scm (wcslib)[arguments]: Skip the default
‘install-license-files’ phase.  Don't build or test in parallel.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 4f12e5cc7c
gnu: inxi: Update to 3.0.11-1.
* gnu/packages/admin.scm (inxi): Update to 3.0.11-1.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice b740a30527
gnu: inxi: Use GIT-FETCH.
* gnu/packages/admin.scm (inxi)[source]: Use GIT-FETCH.
[native-inputs]: Remove tar.
[arguments]: Adjust accordingly.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice 55f5556e24
gnu: inxi: Fix man page location.
* gnu/packages/admin.scm (inxi)[arguments]: Install man page to
/share/man instead of /share/doc/man.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice bba082a1f8
gnu: ruby-asciidoctor: Use HTTPS home page.
* gnu/packages/ruby.scm (ruby-asciidoctor)[home-page]: Use HTTPS.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice 9933a8e739
gnu: ruby-asciidoctor: Update to 1.5.7.1.
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 1.5.7.1.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice 24a2622712
gnu: ruby-eventmachine: Use working home page.
* gnu/packages/ruby.scm (ruby-eventmachine)[home-page]: Update URI.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice c207fa5e6c
gnu: ruby-eventmachine: Update to 1.2.7.
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.7.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice 58021db4d2
gnu: ruby-connection-pool: Update to 2.2.2.
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.2.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice 15dd85f0c3
gnu: linkchecker: Update to 9.4.0.
* gnu/packages/web.scm (linkchecker): Update to 9.4.0.
[source]: Use GIT-FETCH.
[inputs]: Add python2-dnspython and python2-pyxdg.
[arguments]: Remove ‘remove-python-requests-version’ phase.
[license]: Remove licences of unbundled inputs.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice fe04975281
gnu: xf86-input-wacom: Update to 0.36.1.
* gnu/packages/xdisorg.scm (xf86-input-wacom): Update to 0.36.1.
[source]: Update URI.
2018-06-06 06:12:18 +02:00
Tobias Geerinckx-Rice 0ac68e7268
gnu: libwacom: Update to 0.30.
* gnu/packages/xdisorg.scm (libwacom): Update to 0.30.
[source]: Update URI.
2018-06-06 06:12:18 +02:00
Tobias Geerinckx-Rice 81dc1d1220
gnu: libwacom, xf86-input-wacom: Update home page.
‘The Linux Wacom Project has moved.’
-- <http://linuxwacom.sourceforge.net/wiki>

* gnu/packages/xdisorg.scm (libwacom, xf86-input-wacom)[home-page]:
Update URI.
2018-06-06 06:12:18 +02:00
Leo Famulari d83c9fcb7b
gnu: darktable: Update to 2.4.4.
* gnu/packages/photo.scm (darktable): Update to 2.4.4.
2018-06-06 00:05:54 -04:00
Leo Famulari f83eadd2ad
gnu: Update Syncthing to 0.14.48.
*  gnu/packages/syncthing.scm (syncthing): Update to 0.14.48.
2018-06-05 20:35:52 -04:00
Leo Famulari a624be49a2
gnu: go-github-com-chmduquesne-rollinghash-adler32: Update to 0.0.0-2.abb8cba.
* gnu/packages/syncthing.scm (go-github-com-chmduquesne-rollinghash-adler32):
Update to 0.0.0-2.abb8cba.
2018-06-05 20:35:49 -04:00
Ricardo Wurmus ca8de35e90
Merge branch 'master' into core-updates 2018-06-05 23:44:11 +02:00
Ricardo Wurmus 42639cc980
gnu: qtractor: Update to 0.9.1.
* gnu/packages/music.scm (qtractor): Update to 0.9.1.
[arguments]: Add phase "fix-build-with-qt-5.11".
2018-06-05 23:43:12 +02:00
Mark H Weaver db89d31876
gnu: linux-libre: Update to 4.17.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.16-arm.conf,
gnu/packages/aux-files/linux-libre/4.16-arm64.conf,
gnu/packages/aux-files/linux-libre/4.16-i686.conf,
gnu/packages/aux-files/linux-libre/4.16-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.17-arm.conf,
gnu/packages/aux-files/linux-libre/4.17-arm64.conf,
gnu/packages/aux-files/linux-libre/4.17-i686.conf,
gnu/packages/aux-files/linux-libre/4.17-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2018-06-05 17:21:03 -04:00
Mark H Weaver 704051b258
gnu: linux-libre@4.14: Update to 4.14.48.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.48.
(%linux-libre-4.14-hash): Update hash.
2018-06-05 17:20:57 -04:00
Mark H Weaver 4418c59005
gnu: linux-libre@4.9: Update to 4.9.106.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.106.
2018-06-05 17:20:53 -04:00
Ricardo Wurmus b4a145fa71
gnu: yoshimi: Update to 1.5.8.
* gnu/packages/music.scm (yoshimi): Update to 1.5.8.
2018-06-05 23:18:10 +02:00
Efraim Flashner 396aab8e69
gnu: freedoom: Fix compilation.
* gnu/packages/games.scm (freedoom)[arguments]: Remove 'bootstrap phase.
2018-06-05 22:53:48 +03:00
Efraim Flashner d88884fa3b
gnu: arc-theme: Replace bootstrap phase.
* gnu/packages/gmome.scm (arc-theme)[arguments]: Replace 'boostrap phase
with a custom phase.
2018-06-05 22:53:45 +03:00
Efraim Flashner f1c6de3735
gnu: tilda: Replace bootstrap phase.
* gnu/packages/terminals.scm (tilda)[arguments]: Remove custom
'bootstrap phase and use it to replace default bootstrap phase.
2018-06-05 22:10:49 +03:00
Ricardo Wurmus 909301591d
gnu: Add sjcount.
* gnu/packages/bioinformatics.scm (sjcount): New variable.
2018-06-05 15:42:44 +02:00
Ricardo Wurmus a64e30ed9e
gnu: Remove duplicate definition of r-heatmaply.
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05 13:59:54 +02:00
Ricardo Wurmus d0f3427433
gnu: Remove duplicate definition of r-heatmaply.
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05 13:59:15 +02:00
Ricardo Wurmus 1ee581973a
gnu: r-heatmaply: Add r-knitr.
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05 13:51:27 +02:00
Ricardo Wurmus 6da3aa3763
gnu: r-heatmaply: Add r-knitr.
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05 13:50:29 +02:00
Ricardo Wurmus e53152c72d
gnu: dropseq-tools: Remove failing phase.
* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete
"generate-jar-indices" phase.
2018-06-05 13:12:13 +02:00
Ricardo Wurmus 0c68f7fd9b
gnu: java-bouncycastle: Disable tests.
* gnu/packages/java.scm (java-bouncycastle)[arguments]: Disable tests.
2018-06-05 12:49:41 +02:00
Ricardo Wurmus 9cc66d75a2
gnu: pigx-scrnaseq: Use only one variant of Picard.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"java-picard" with "java-picard-2.10.3".
2018-06-05 11:26:34 +02:00
Ricardo Wurmus 1f94ba9408
gnu: java-picard: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
2018-06-05 11:26:08 +02:00
Ricardo Wurmus 1ed386fc26
gnu: java-cisd-jhdf5: Delete failing build phase.
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Delete build phase
"generate-jar-indices".
2018-06-05 11:17:03 +02:00
Ricardo Wurmus a993ad833e
gnu: java-picard-1.113: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete
"generate-jar-indices" build phase.
2018-06-05 11:15:21 +02:00
Ricardo Wurmus e847f402c1
gnu: java-picard-2.10.3: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
2018-06-05 11:14:38 +02:00
Ricardo Wurmus d7e6fb6d7e
Merge branch 'master' into core-updates 2018-06-05 11:09:39 +02:00
Ricardo Wurmus 71c495c941
gnu: r-rtracklayer: Update to 1.40.3.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus fb8c17baef
gnu: r-ranger: Update to 0.10.1.
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.1.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus c9a879ed54
gnu: r-np: Update to 0.60-8.
* gnu/packages/cran.scm (r-np): Update to 0.60-8.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus 83d5c2e106
gnu: t-series: Update to 0.10-45.
* gnu/packages/cran.scm (t-series): Update to 0.10-45.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus c152c6b361
gnu: r-ksamples: Update to 1.2-8.
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-8.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus d19e0690b9
gnu: r-methylkit: Update to 1.6.1.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus 0da6afa286
gnu: r-bamsignals: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus 66ece08d05
Merge branch 'master' into core-updates 2018-06-05 09:59:27 +02:00
Tobias Geerinckx-Rice 4bf0a1f8d1
gnu: p11-kit: Update to 0.23.12.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.12.
2018-06-05 03:19:48 +02:00
Mark H Weaver 8b71684a20
gnu: elfutils: Disable test suite on MIPS.
* gnu/packages/elf.scm (elfutils)[arguments]: Add (#:tests? #f) on MIPS.
2018-06-04 21:19:35 -04:00
Tobias Geerinckx-Rice 46fce96881
gnu: beets: Return #t from phases.
* gnu/packages/music.scm (beets)[arguments]: Substitute INVOKE for
SYSTEM* and return #t from all phases.
2018-06-05 03:19:26 +02:00
Tobias Geerinckx-Rice 123f86d898
gnu: nano: Update to 2.9.8.
* gnu/packages/nano.scm (nano): Update to 2.9.8.
2018-06-05 03:18:46 +02:00
Tobias Geerinckx-Rice 0d35a95417
gnu: python-pycurl: Update to 7.43.0.2.
* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.2.
2018-06-05 03:18:46 +02:00
Tobias Geerinckx-Rice 4682d48363
gnu: fvwm: Update to 2.6.8.
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.8.
2018-06-05 03:01:17 +02:00
Tobias Geerinckx-Rice f7b53e6855
gnu: perl-parse-yapp: Update to 1.21.
* gnu/packages/perl.scm (perl-parse-yapp): Update to 1.21.
2018-06-05 03:01:17 +02:00
Tobias Geerinckx-Rice b5dfccd7b6
gnu: perl-text-balanced: Update to 2.03.
* gnu/packages/perl.scm (perl-text-balanced): Update to 2.03.
[source]: Update URI.
2018-06-05 03:01:16 +02:00
Tobias Geerinckx-Rice 971b8381ff
gnu: perl-posix-strftime-compiler: Update to 0.42.
* gnu/packages/perl.scm (perl-posix-strftime-compiler): Update to
0.42.
2018-06-05 03:01:07 +02:00
Tobias Geerinckx-Rice 27f89be5c9
gnu: perl-moosex-methodattributes: Update to 0.31.
* gnu/packages/perl.scm (perl-moosex-methodattributes): Update to
0.31.
2018-06-05 03:00:58 +02:00
Tobias Geerinckx-Rice 91cb6eaf52
gnu: perl-module-install: Update to 1.19.
* gnu/packages/perl.scm (perl-module-install): Update to 1.19.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
Tobias Geerinckx-Rice ed2e354b79
gnu: perl-memoize-expirelru: Update to 0.56.
* gnu/packages/perl.scm (perl-memoize-expirelru): Update to 0.56.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
Tobias Geerinckx-Rice 01c6607af9
gnu: ccid, pcsc-lite: Move away from alioth.debian.org.
* gnu/packages/security-token.scm (ccid, pcsc-lite)[source, home-page]:
Update upstream URI.
2018-06-04 18:27:59 +02:00
Rutger Helling 19b662ea7c
gnu: ranger: Enable image support.
* gnu/packages/disk.scm (ranger)[inputs]: Add 'w3m'.
[arguments]: Add wrapper for W3MIMGDISPLAY_PATH environment variable.
2018-06-04 16:35:03 +02:00
Tobias Geerinckx-Rice fd17434249
gnu: lz4: Use HTTPS home page.
* gnu/packages/compression.scm (lz4)[home-page]: Use HTTPS.
2018-06-04 15:35:48 +02:00
Tobias Geerinckx-Rice b6315bc0d2
gnu: thermald: Update to 1.7.2.
* gnu/packages/admin.scm (thermald): Update to 1.7.2.
[arguments]: Remove Upstart kluge as promised.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice 49d85a19fb
gnu: pdfgrep: Update to 2.1.1.
* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.1.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice e1345dec67
gnu: lxqt-build-tools: Update to 0.5.0.
* gnu/packages/lxqt.scm (lxqt-build-tools): Update to 0.5.0.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice 12eadf5649
gnu: perl-libintl-perl: Update to 1.29.
* gnu/packages/perl.scm (perl-libintl-perl): Update to 1.29.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice a0b9612fc9
gnu: perl-hash-multivalue: Update to 0.16.
* gnu/packages/perl.scm (perl-hash-multivalue): Update to 0.16.
[source]: Update URI.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice 92299d669a
gnu: perl-file-pushd: Update to 1.016.
* gnu/packages/perl.scm (perl-file-pushd): Update to 1.016.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice cf25329661
gnu: perl-exception-class: Update to 1.44.
* gnu/packages/perl.scm (perl-exception-class): Update to 1.44.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice 4f6c01e78a
gnu: perl-datetime-timezone: Update to 2.19.
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.19.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice a1b16662bc
gnu: perl-test-without-module: Update to 0.20.
* gnu/packages/perl-check.scm (perl-test-without-module): Update to 0.20.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice e40ab7382e
gnu: perl-datetime: Update to 1.49.
* gnu/packages/perl.scm (perl-datetime): Update to 1.49.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice 854cf20647
gnu: perl-context-preserve: Update to 0.03.
* gnu/packages/perl.scm (perl-context-preserve): Update to 0.03.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice 30c070d1ae
gnu: perl-class-load-xs: Update to 0.10.
* gnu/packages/perl.scm (perl-class-load-xs): Update to 0.10.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
Add perl-test-without-module.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice d2fe431870
gnu: perl-class-load: Update to 0.24.
* gnu/packages/perl.scm (perl-class-load): Update to 0.24.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
Add perl-test-without-module.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice d017dfaaf3
gnu: sent: Say ‘plain text’.
‘Plaintext’ is a crypto term.  ‘Slideshow’ is apparently acceptable.

* gnu/packages/suckless.scm (sent)[synopsis, description]: Add spaces.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice 4ae9274ae9
gnu: snd: Version documentation directory.
* gnu/packages/audio.scm (snd)[arguments]: Install documentation to the
conventional location.  Remove redundant MKDIR-P.  Align cosmetically.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice 84979374c2
gnu: acpica: Update to 20180531.
* gnu/packages/admin.scm (acpica): Update to 20180531.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice a052d5ab0d
gnu: isync: Add SASL support.
This adds ~5.5 MiB (7.5%) to isync's now-78.6 MiB closure.

* gnu/packages/mail.scm (isync)[inputs]: Add CYRUS-SASL.
2018-06-04 15:35:43 +02:00
Ludovic Courtès 7394e264fc
gnu: perf: Work around GCC bug.
Works around <https://bugs.gnu.org/31708>.

* gnu/packages/patches/perf-gcc-ice.patch: New patch.
* gnu/packages/linux.scm (perf)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-04 14:03:54 +02:00
Ludovic Courtès 831f07a009
gnu: signing-party: Update to commit d6f2296.
* gnu/packages/gnupg.scm (signing-party): Update to commit d6f2296.
[home-page]: Change to salsa.debian.org.
[source]: Use git-fetch.
[arguments]: Remove 'change-directory' phase.  In 'configure' phase,
modify 'gpgwrap/Makefile' instead of 'gpgwrap/src/Makefile'.
2018-06-04 14:03:54 +02:00
Ricardo Wurmus 32da38d572
Merge branch 'master' into core-updates 2018-06-04 11:25:48 +02:00
Efraim Flashner c0e7a52996
gnu: python-pyqt: Update to 5.10.1.
* gnu/packages/qt.scm (python-pyqt): Update to 5.10.1.
[inputs]: Remove qtwebkit.
[arguments]: Add custom phase to fix compilation with Qt 5.11.
2018-06-04 11:06:00 +03:00
Efraim Flashner 9cdd868450
gnu: python-sip: Update to 4.19.8.
* gnu/packages/qt.scm (python-sip): Update to 4.19.8.
2018-06-04 11:05:57 +03:00
Efraim Flashner d53e5b366d
gnu: gcompris-qt: Update to 0.91.
* gnu/packages/education.scm (gcompris-qt): Update to 0.91.
[arguments]: Add custom phase to fix building with Qt 5.11.
2018-06-03 19:11:27 +03:00
Efraim Flashner 68ddfb2e8d
gnu: quassel: Fix building with Qt 5.11.
* gnu/packages/irc.scm (quassel)[sources]: Add patch. Return #t from
snippet.
* gnu/packages/patches/quassel-qt-5.11.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-06-03 15:49:50 +03:00
Rutger Helling 4edc431b0f
gnu: w3m: Enable image support.
* gnu/packages/w3m.scm (w3m)[inputs]: Add gdk-pixbuf, libx11.
2018-06-03 13:01:41 +02:00
Efraim Flashner 6f5c67d725
gnu: keepassxc: Fix compilation with Qt 5.11.
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add custom
'patch-sources phase to include missing headers.
2018-06-03 12:46:11 +03:00
Mark H Weaver 0c0431f9ce
Merge branch 'master' into core-updates 2018-06-03 03:36:47 -04:00
Mark H Weaver 2c790226d2
gnu: rust: Fix build for armhf and mips64el.
This is a followup to commit 514026d7de.

* gnu/packages/rust.scm (nix-system->gnu-triplet-for-rust): New variable.
(rust-bootstrap, mrustc, rust-1.23): Use 'nix-system->gnu-triplet-for-rust'
instead of 'nix-system->gnu-triplet'.
2018-06-03 03:36:13 -04:00
Efraim Flashner 0ec430f795
gnu: xxd: Remove all inherited inputs.
* gnu/packages/vim.scm (xxd)[inputs]: New field, don't inherit from vim.
2018-06-02 23:34:56 +03:00
Efraim Flashner aa75dadab8
gnu: vim: Update to 8.1.0026.
* gnu/packages/vim.scm (vim): Update to 8.1.0026.
[arguments]: Update substitute list on custom 'patch-config-files phase.
[inputs]: Remove inetutils.
2018-06-02 23:34:37 +03:00
Efraim Flashner 2d4fdb707e
gnu: xxd: Return true from all phases.
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir
phase.
2018-06-02 22:34:23 +03:00
Pierre Neidhardt 15dcd292df
gnu: Add emacs-fish-completion.
* gnu/packages/emacs.scm (emacs-fish-completion): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:52 +02:00
Pierre Neidhardt e374010923
gnu: Add emacs-evil-org.
* gnu/packages/emacs.scm (emacs-evil-org): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt ac85107c9f
gnu: Add emacs-evil-multiedit.
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt e1e09bcb43
gnu: Add emacs-evil-mu4e.
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt c6c1f0bf41
gnu: Add emacs-evil-magit.
* gnu/packages/emacs.scm (emacs-evil-magit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt 22deb03439
gnu: Add emacs-evil-ediff.
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Ludovic Courtès f52ef55e2b
gnu: guile-json: Update to 1.0.1.
* gnu/packages/guile.scm (guile-json): Update to 1.0.1.
[source]: Switch to github.com.  Adjust 'snippet' to modify
'configure.ac' and 'Makefile.am'.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
2018-06-02 15:29:38 +02:00
Ricardo Wurmus e0f8970357
Merge branch 'master' into core-updates 2018-06-02 13:44:43 +02:00
Ricardo Wurmus 92963798a6
gnu: r-scater: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.
2018-06-02 13:42:05 +02:00
Ricardo Wurmus 83402242ea
gnu: r-mvtnorm: Update to 1.0-8.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus 7799a01ef1
gnu: r-rgraphviz: Update to 2.24.0.
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus d7e3299987
gnu: r-scran: Update to 1.8.2.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus 8ec56b2956
gnu: r-delayedmatrixstats: Update to 1.2.0.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus d99e0938fa
gnu: r-singlecellexperiment: Update to 1.2.0.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus fd613234b7
gnu: r-beachmat: Update to 1.2.1.
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus e9c417361e
gnu: r-rhdf5lib: Update to 1.2.1.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 0840352835
gnu: r-hdf5array: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 5cd725d002
gnu: r-qvalue: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus c6c619c179
gnu: r-hitc: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 4dedecbe70
gnu: r-fithic: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 8db6256f4b
gnu: r-sushi: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 2d3c172b72
gnu: r-gwascat: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus fecbbac286
gnu: r-gviz: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 6929b97583
gnu: r-gqtlstats: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 45c29a6e5c
gnu: r-ldblock: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus 9b0b108ed9
gnu: r-erma: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus d26f95d079
gnu: r-snpstats: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus dcd1f0236c
gnu: r-gqtlbase: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus e214a6e6ff
gnu: r-ggbio: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 34cc18d4de
gnu: r-biovizbase: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 94ae875c0a
gnu: r-organismdbi: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus bbcd19fb4d
gnu: r-ensembldb: Update to 2.4.1.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 19adb89854
gnu: r-dirichletmultinomial: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus d3fb2ad834
gnu: r-complexheatmap: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus d1463f1b0c
gnu: r-genomicfiles: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 1ba126e0e4
gnu: r-gage: Update to 2.30.0.
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 419e438d52
gnu: r-keggrest: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 15cc1a6867
gnu: r-fastseg: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 646439c7e3
gnu: r-annotationhub: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 420415b057
gnu: r-interactivedisplaybase: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus a67dd4c5e9
gnu: r-edaseq: Update to 2.14.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 749b712677
gnu: r-deseq: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 0ebd7a4c9f
gnu: r-aroma-light: Update to 3.10.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus bdc8b40af2
gnu: r-msnid: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 250d78eac9
gnu: r-msnbase: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1.
[propagated-inputs]: Add r-mass and r-scales.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 0f773b90db
gnu: r-pcamethods: Update to 1.72.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.72.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 7bd2582971
gnu: r-mzid: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.18.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus af8710624d
gnu: r-vsn: Update to 3.48.1.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.48.1.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 5837f1835b
gnu: r-affy: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.58.0.
[inputs]: Add zlib.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 82589f7430
gnu: r-affyio: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.50.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 39cc491790
gnu: r-mzr: Update to 2.14.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.14.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus a02b82088f
gnu: r-protgenerics: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.12.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 9547dd8613
gnu: r-sva: Update to 3.28.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.28.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 19ad568e79
gnu: r-methylkit: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus aae4f716da
gnu: r-copywriter: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.12.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 8f94487da7
gnu: r-chipseq: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.30.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 62509bbc81
gnu: r-annotationfilter: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.4.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus d73c5728f3
gnu: r-rhdf5: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus c76e8baf9e
gnu: r-tximport: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus b6c2c8f781
gnu: r-mutationalpatterns: Update to 1.6.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 72f11ff9c5
gnu: r-bamsignals: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 1a08bb8a17
gnu: r-rhtslib: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 2c480bb012
gnu: r-zlibbioc: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 7e6537e257
gnu: r-motifrg: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 8217c2d0bc
gnu: r-seqlogo: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 17d35de73f
gnu: r-genomation: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 5229cedf57
gnu: r-seqpattern: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 25d1df5764
gnu: r-impute: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.54.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 89ef133ebd
gnu: r-bsgenome: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.48.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus f2eb2e453e
gnu: r-topgo: Update to 2.32.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.32.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 2f66fecd89
gnu: r-graph: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.58.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus b4ad4ec6b4
gnu: r-genomicfeatures: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.0.
[propagated-inputs]: Remove r-rmysql.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus a30df29768
gnu: r-rtracklayer: Update to 1.40.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.2.
[native-inputs]: Add pkg-config.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 90102bd06b
gnu: r-genomicalignments: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 9bf4110ea1
gnu: r-summarizedexperiment: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 82f593f378
gnu: r-delayedarray: Update to 0.6.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus d2367a89dd
gnu: r-rsamtools: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 942655add1
gnu: r-biostrings: Update to 2.48.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus e6eac58d4c
gnu: r-biocparallel: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 1763cba80e
gnu: r-biomart: Update to 2.36.1.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 77f66feee7
gnu: r-annotationdbi: Update to 1.42.1.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 6fd71f1b6a
gnu: r-biobase: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus e51afc63b7
gnu: r-genomicranges: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus c2401d06c5
gnu: r-xvector: Update to 0.20.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 0a465e5694
gnu: r-limma: Update to 3.36.1.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus d358a5a0c1
gnu: r-variantannotation: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 4639025284
gnu: r-edger: Update to 3.22.2.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 953c8b18f8
gnu: r-genomeinfodb: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 8b44c28f5d
gnu: r-iranges: Update to 2.14.10.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 33cd15fa84
gnu: r-s4vectors: Update to 0.18.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 607acf3194
gnu: r-dnacopy: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 3679a2fec4
gnu: r-bioccheck: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus dc6c168ac1
gnu: r-biocstyle: Update to 2.8.2.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus e5f52b692a
gnu: r-biocviews: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 97af51ef40
gnu: r-biocinstaller: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus e5907a44e1
gnu: r-biocgenerics: Update to 0.26.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 9370b8ee9f
gnu: r-grohmm: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 712fe39680
gnu: r-systempiper: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus eabe78faca
gnu: r-shortread: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 9da8e275ca
gnu: r-gostats: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus d8410d6610
gnu: r-category: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus f1094f50a7
gnu: r-gseabase: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 9177ac2295
gnu: r-rbgl: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 5516db9e70
gnu: r-annotationforge: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 16da69b5e6
gnu: r-dexseq: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 51c1f96ebc
gnu: r-deseq2: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 41657b15f4
gnu: r-genefilter: Update to 1.62.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 4d70c8c486
gnu: r-geneplotter: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 14e9235f0c
gnu: r-copynumber: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 02be818044
gnu: r-annotate: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 81b0181b6f
gnu: r-qdnaseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 5c0df206cf
gnu: r-cghcall: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 205df4a4cb
gnu: r-cghbase: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 6748708883
gnu: r-marray: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0.
[propagated-inputs]: Remove r-biobase.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus f794e85daa
gnu: r-chippeakanno: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0.
[propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges,
r-iranges, and r-s4vectors.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 43734b4727
gnu: r-ripseeker: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 45bbccf4e7
gnu: r-diffbind: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 72427c721d
gnu: r-regioner: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 2f5b3d8e90
gnu: r-hpar: Update to 1.22.2.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus d22546cf80
gnu: r-minimal: Update to 3.5.0.
* gnu/packages/statistics.scm (r-with-tests): New variable derived from
r-minimal; update to 3.5.0.
[arguments]: Build recommended packages.
(r-minimal): Inherit from r-with-tests.
[arguments]: Disable recommended packages and tests.
2018-06-02 13:39:06 +02:00
Clément Lassieur d5452aa201
gnu: emacs-elfeed: Update to 3.0.0.
* gnu/packages/emacs.scm (emacs-elfeed): Update to 3.0.0.
2018-06-02 13:05:08 +02:00
Ludovic Courtès a13c1bf4ca
Merge branch 'master' into core-updates 2018-06-01 23:41:40 +02:00
Mark H Weaver 1a3e3162ac
gnu: icecat: Add more fixes from upstream esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-06-01 12:51:43 -04:00
Ricardo Wurmus 65a9f6b6cf
gnu: qtbase: Fix build on older kernels.
* gnu/packages/qt.scm (qtbase)[arguments]: Add configure flags
"-no-feature-getentropy" and "-no-feature-renameat2".
2018-06-01 17:33:25 +02:00
Robin Templeton 514026d7de
gnu: rust: Add support for building 32-bit packages on 64-bit hosts.
* gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use
nix-system->gnu-triplet to determine the system type.
(rust-1.19): Use readelf instead of nm in the atomic-lock-free test.
(rust-1.23): Disable the cargo_test_env test. Disable parallel execution of
tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample a078a6ec3b
gnu: Add git-annex.
* gnu/packages/version-control.scm (git-annex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 4e5d9bf20e
gnu: Add ghc-disk-free-space.
* gnu/packages/haskell.scm (ghc-disk-free-space): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 1ea3971992
gnu: ghc-psqueues: Allow building with newer versions of QuickCheck.
* gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure
flag to allow newer versions of QuickCheck.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 6950a45073
gnu: Add ghc-safesemaphore.
* gnu/packages/haskell.scm (ghc-safesemaphore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 92c2097bc2
gnu: Add ghc-esqueleto.
* gnu/packages/haskell.scm (ghc-esqueleto): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample a39e6faee9
gnu: Add ghc-ifelse.
* gnu/packages/haskell.scm (ghc-ifelse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample e3aae496f9
gnu: Add ghc-feed.
* gnu/packages/haskell.scm (ghc-feed): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample 4c798726b4
gnu: Add ghc-bloomfilter.
* gnu/package/haskell.scm (ghc-bloomfilter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Rouby Pierre-Antoine d6a4dfec90
gnu: Add hpcguix-web.
* gnu/package/web.scm (hpcguix-web): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-06-01 13:50:26 +02:00
Ludovic Courtès 5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26.
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase.  In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable.  Remove substitution for
'w3m-image-viewer', which no longer exists.
2018-06-01 13:50:26 +02:00
Stefan Stefanović 8674abb1dd
gnu: sddm: Fix CMake build.
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.

Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-06-01 12:17:00 +02:00
Leo Famulari e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
2018-05-31 20:31:46 -04:00
Konrad Hinsen 555ab0853b
gnu: Add emacs-zotxt.
* gnu/packages/emacs.scm (emacs-zotxt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:09 +02:00
Konrad Hinsen 45dca193a4
gnu: Add emacs-org-caldav.
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Konrad Hinsen ec8a9892d1
gnu: Add python-bigfloat.
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Fis Trivial 73d854232f
gnu: bear: Fix python path.
* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Ricardo Wurmus 59f87b44da
Merge branch 'master' into core-updates 2018-05-31 13:23:49 +02:00
Ricardo Wurmus 404e5c7d7d
gnu: r-servr: Update to 0.10.
* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 508dd24abe
gnu: r-shiny: Update to 1.1.0.
* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus eb0d599a67
gnu: r-rjson: Update to 0.2.19.
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 71644c0ee8
gnu: r-htmltable: Update to 1.12.
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus beb0878fe5
gnu: r-directlabels: Update to 2018.05.22.
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 089e037638
gnu: r-ranger: Update to 0.10.0.
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 14bb6f5f83
gnu: r-tclust: Update to 1.4-1.
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9fad62743c
gnu: r-caret: Update to 6.0-80.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9bcc68fbf6
gnu: r-quantreg: Update to 5.36.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13dc492435
gnu: r-rrcov: Update to 1.4-4.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0.
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 366dd8d7cb
gnu: r-runit: Update to 0.4.32.
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus edb29f2986
gnu: r-purrr: Update to 0.2.5.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus e94d827440
gnu: r-tidyr: Update to 0.8.1.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1957c20e0c
gnu: r-synchronicity: Update to 1.3.4.
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 7da0790e2a
gnu: r-rngtools: Update to 1.3.1.
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3a6051659d
gnu: r-pkgmaker: Update to 0.27.
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3.
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus a52bb97a79
gnu: r-plotrix: Update to 3.7-2.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1ce6be5ee2
gnu: r-data-table: Update to 1.11.4.
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 2d7758c1d6
gnu: r-rlang: Update to 0.2.1.
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 624283a107
gnu: r-knitrbootstrap: Update to 1.0.2.
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10.
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 99b225f3eb
gnu: r-bit: Update to 1.1-14.
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3c441be0f3
gnu: r-kernlab: Update to 0.9-26.
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus ad016826c9
gnu: r-rmysql: Update to 0.10.15.
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus aea3be250c
gnu: r-mice: Update to 3.0.0.
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6034a62a1b
gnu: r-callr: Update to 2.0.4.
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0.
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus e86d3cc501
gnu: r-shinyace: Update to 0.3.1.
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus a80606308a
gnu: r-processx: Update to 3.1.0.
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9944399ae3
gnu: r-ggally: Update to 1.4.0.
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13079c143b
gnu: r-psych: Update to 1.8.4.
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus aadb9ee6df
gnu: r-pillar: Update to 1.2.3.
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 65ea783f6c
gnu: r-utf8: Update to 1.1.4.
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus c36745cf95
gnu: r-ggjoy: Update to 0.4.1.
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus cda93e8399
gnu: r-dtw: Update to 1.20-1.
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus fabf09934b
gnu: r-ica: Update to 1.0-2.
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1e31e8bc74
gnu: r-sm: Update to 2.2-5.5.
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1.
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0759d87dfc
gnu: r-ggrepel: Update to 0.8.0.
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus b13b56743b
gnu: r-cvst: Update to 0.2-2.
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 975ea10d6f
gnu: r-energy: Update to 1.7-4.
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 90f1ecb939
gnu: r-emdbook: Update to 1.3.10.
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0acbf8bbb7
gnu: r-inline: Update to 0.3.15.
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 207c497e14
gnu: r-ff: Update to 2.2-14.
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus c81497b141
gnu: r-rcpp: Update to 0.12.17.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 5479e3e639
gnu: r-abbyyr: Update to 0.5.4.
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 11de8673d1
gnu: Add r-bibtex.
* gnu/packages/cran.scm (r-bibtex): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9f56ceecf3
gnu: Add r-reticulate.
* gnu/packages/cran.scm (r-reticulate): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus d182828f53
gnu: Add r-zip.
* gnu/packages/cran.scm (r-zip): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 84e7147ae3
gnu: Add r-mitml.
* gnu/packages/cran.scm (r-mitml): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 03e718fbb1
gnu: Add r-pan.
* gnu/packages/cran.scm (r-pan): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus fe1495e35c
gnu: Add r-jomo.
* gnu/packages/cran.scm (r-jomo): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3ca317359c
gnu: r-vegan: Update to 2.5-2.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
2018-05-31 13:21:31 +02:00
Mark H Weaver 966e9575a3
gnu: linux-libre@4.14: Update to 4.14.47.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.47.
(%linux-libre-4.14-hash): Update hash.
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.14): Remove patch.
2018-05-31 04:17:22 -04:00
Mark H Weaver 55b68174aa
gnu: linux-libre@4.9: Update to 4.9.105.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.105.
Remove patch.
2018-05-31 04:16:05 -04:00
Mark H Weaver 2aab213e36
gnu: linux-libre@4.4: Update to 4.4.135.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.135.
Remove patch.
2018-05-31 04:14:57 -04:00
Ricardo Wurmus 1e341fa508
gnu: powertabeditor: Fix build with Qt 5.11.
Fixes <https://bugs.gnu.org/31659>.

* gnu/packages/music.scm (powertabeditor)[arguments]: Add build phase
"add-missing-headers".
2018-05-31 08:30:45 +02:00
Efraim Flashner d2dde99e99
gnu: mariadb: Update to 10.1.33.
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-31 08:45:58 +03:00
Mark H Weaver 0d6f84aab1
Merge branch 'master' into core-updates 2018-05-31 00:27:03 -04:00
Mark H Weaver 88a3465e4a
gnu: linux-libre: Revert bad upstream patch in 4.14/4.9/4.4 kernels.
Apply the 1-line revert from upstream that was the sole fix in 4.14.47,
4.9.105, and 4.4.135.  Here we cherry-pick the patch until the corresponding
linux-libre versions are released.

* gnu/packages/linux.scm (linux-libre-4.14, linux-libre-4.9)
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.4): Add the patch.
2018-05-31 00:23:41 -04:00
Jonathan Brielmaier 706d6190ca
gnu: 0ad: Update to 0.0.23-alpha.
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23-alpha.
[source]: Use HTTPS URL.
[inputs]: Add libsodium.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-31 00:21:47 -04:00
Tobias Geerinckx-Rice e9ae846667
gnu: knot: Update to 2.6.7.
* gnu/packages/dns.scm (knot): Update to 2.6.7.
2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 51c4fb007a
gnu: duperemove: Update to 0.11.
* gnu/packages/disk.scm (duperemove): Update to 0.11.
2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 42d93a32ee
gnu: sakura: Update to 3.6.0.
* gnu/packages/terminals.scm (sakura): Update to 3.6.0.
2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice 4ef1d9fd8b
gnu: stunnel: Update to 5.46.
* gnu/packages/web.scm (stunnel): Update to 5.46.
2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 6c4d1413f2
gnu: mkvtoolnix: Use INVOKE.
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 8d5960d1b1
gnu: liba52: Use INVOKE.
* gnu/packages/video.scm (liba52)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice 3103101ec9
gnu: aalib: Use INVOKE.
* gnu/packages/video.scm (aalib)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice d840f6b98a
gnu: xapian: Use INVOKE.
* gnu/packages/search.scm (xapian)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice 6c738fe9e7
gnu: khal: Use INVOKE.
* gnu/packages/calendar.scm (khal)[arguments]: Substitute INVOKE for
SYSTEM* and explicitly return #t from phases where needed.
2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice 4133914416
gnu: rss-bridge: Use INVOKE.
* gnu/packages/web.scm (rss-bridge)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
Tobias Geerinckx-Rice a145d7e9af
gnu: python-clf: Use INVOKE.
* gnu/packages/web.scm (python-clf)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
Tobias Geerinckx-Rice b8150fa091
gnu: python-internetarchive: Use INVOKE.
* gnu/packages/web.scm (python-internetarchive)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-05-31 04:54:54 +02:00
Tobias Geerinckx-Rice 16b5dafc4d
gnu: httptunnel: Use INVOKE.
* gnu/packages/web.scm (httptunnel)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:54 +02:00
Tobias Geerinckx-Rice 2cdc719193
gnu: surfraw: Use INVOKE.
* gnu/packages/web.scm (surfraw)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice 9cd760f13f
gnu: gumbo-parser: Use INVOKE.
* gnu/packages/web.scm (gumbo-parser)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice 7f4e5f19fa
gnu: sassc: Use INVOKE.
* gnu/packages/web.scm (sassc)[arguments]: Substitute INVOKE for SYSTEM*
and its plumbing.
2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice b5d587055b
gnu: tidy: Use INVOKE.
* gnu/packages/web.scm (tidy)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31 04:54:52 +02:00
Tobias Geerinckx-Rice 946e5e8aa1
gnu: tipp10: Use INVOKE.
* gnu/packages/education.scm (tipp10)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:52 +02:00
Tobias Geerinckx-Rice aa0771556e
gnu: krona-tools: Use INVOKE.
* gnu/packages/web.scm (krona-tools)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
Tobias Geerinckx-Rice 359375e649
gnu: fcgiwrap: Use INVOKE.
* gnu/packages/web.scm (fcgiwrap)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
Tobias Geerinckx-Rice e80c05ac3e
gnu: ffmpeg: Use INVOKE.
* gnu/packages/video.scm (ffmpeg)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice 512f22f9e8
gnu: r-dplyr: Update to 0.7.5.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.5.
[propagated-inputs]: Add r-tidyselect.
2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice fc55fe2ef7
gnu: s6-rc: Update to 0.4.0.1.
* gnu/packages/skarnet.scm (s6-rc): Update to 0.4.0.1.
2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice 1608969b03
gnu: skalibs: Update to 2.6.4.0.
* gnu/packages/skarnet.scm (skalibs): Update to 2.6.4.0.
2018-05-31 04:54:49 +02:00
Tobias Geerinckx-Rice 2c65c085f9
gnu: lchat: Mark up description.
* gnu/packages/suckless.scm (lchat)[description]: Use @code.
2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice 82f22fac9f
gnu: lchat: Update to 0.0.0-3.f951919.
* gnu/packages/suckless.scm (lchat): Update to 0.0.0-3.f951919.
[arguments]: Run tests.  Install man page.
2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice aa945bf637
gnu: human: Update to 0.3.
* gnu/packages/suckless.scm (human): Update to 0.3.
[source]: Use version as the tag, and GIT-FILE-NAME.
2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice 8f7c6a5ff7
gnu: sent: Update to 1.
* gnu/packages/suckless.scm (sent): Update to 1.
[source]: Switch to URL-FETCH/TARBALL.
2018-05-31 04:54:47 +02:00
Tobias Geerinckx-Rice fc1a7b58d7
gnu: st: Update to 0.8.1.
* gnu/packages/suckless.scm (st): Update to 0.8.1.
[arguments]: Relax ‘inhibit-terminfo-install’ regular expression.
2018-05-31 04:54:47 +02:00
Tobias Geerinckx-Rice 504d16dd04
gnu: spoon: Update to 0.6.
* gnu/packages/suckless.scm (spoon): Update to 0.6.
2018-05-31 04:54:46 +02:00
Tobias Geerinckx-Rice a66fb3a14e
gnu: isync: Add zlib compression support.
This adds ~400 KiB (.5%) to isync's now-73.1 MiB closure.

* gnu/packages/mail.scm (isync)[inputs]: Add ZLIB.
2018-05-30 23:46:53 +02:00
Efraim Flashner 03d9031962
gnu: mariadb: Update to 10.1.33.
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-30 22:46:31 +03:00
Mark H Weaver 370e87fdbb
gnu: linux-libre: Update to 4.16.13.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.13.
(%linux-libre-hash): Update hash.
2018-05-30 14:59:47 -04:00
Mark H Weaver 49e67982eb
gnu: linux-libre@4.14: Update to 4.14.46.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.46.
(%linux-libre-4.14-hash): Update hash.
2018-05-30 14:58:49 -04:00
Mark H Weaver f9e1c2d72a
gnu: linux-libre@4.9: Update to 4.9.104.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.104.
2018-05-30 14:58:09 -04:00
Mark H Weaver 13fcbf3cce
gnu: linux-libre@4.4: Update to 4.4.134.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.134.
2018-05-30 14:57:22 -04:00
Clément Lassieur 6f8f98df7f
gnu: scribus: Fix build against Qt 5.11.
* gnu/packages/scribus.scm (scribus)[arguments]: Add a 'patch-source' phase
that includes missing headers.
2018-05-30 20:45:17 +02:00
Ludovic Courtès 9ab0627eee
gnu: glibc-locales: Adjust patch that no longer applied.
* gnu/packages/patches/glibc-locales.patch: Adjust for glibc 2.27.
2018-05-30 15:21:27 +02:00
Ricardo Wurmus 80c0f69c50
gnu: emms: Fix build.
* gnu/packages/emacs.scm (emms)[arguments]: Reset time stamps of files to be
gzipped; let post-install phase return #t.
2018-05-30 14:54:53 +02:00
Ricardo Wurmus bc73f673e8
gnu: icedtea-7: Build with gcc-4.9.
* gnu/packages/java.scm (icedtea-7)[native-inputs]: Add gcc-4.9.
2018-05-30 12:29:14 +02:00
Ricardo Wurmus bcb078a4dc
gnu: icedtea-6: Build with gcc-4.9.
* gnu/packages/java.scm (icedtea-6)[native-inputs]: Add gcc-4.9 and libnsl.
2018-05-30 11:06:21 +02:00
Mark H Weaver d0e23e3940
gnu: vlc: Update to 3.0.3, and add more inputs.
Co-authored-by: Roel Janssen <roel@gnu.org>

* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg.  Replace lua-5.1 with
lua-5.2.  Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags.  In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt".  Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'.  Add new
'wrap-executable' phase.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
2018-05-30 11:02:57 +02:00
Clément Lassieur cfcd9a4551
gnu: wireshark: End phase with #t.
* gnu/packages/networking.scm (wireshark)[arguments]: End 'patch-source' phase
with #t.
2018-05-30 11:02:52 +02:00
Tobias Geerinckx-Rice 3fe0d36027
gnu: perl-text-format: Update to 0.61.
* gnu/packages/perl.scm (perl-text-format): Update to 0.61.
2018-05-30 10:06:57 +02:00
Tobias Geerinckx-Rice 2847d833be
gnu: python-oslo.utils: Update to 3.36.2.
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.2.
2018-05-30 10:06:57 +02:00
Ricardo Wurmus 14e2f61ada
gnu: gtkglext: Fix build.
* gnu/packages/gnome.scm (gtkglext)[arguments]: Add build phase to fix name
collision.
2018-05-30 08:57:33 +02:00
Mark H Weaver 341a36b32c
Merge branch 'master' into core-updates 2018-05-30 02:21:29 -04:00
Mark H Weaver a21bcd7079
Revert "gnu: swig: Patch for Octave 4.4."
This reverts commit 3771000f89.
2018-05-30 02:18:26 -04:00
Rutger Helling bfc25e015d
gnu: xpra: Update to 2.3.1.
* gnu/packages/xorg.scm (xpra): Update to 2.3.1.
[inputs]: Add libxi.
2018-05-30 08:14:23 +02:00
Ricardo Wurmus b3e23b0216
gnu: ibus-libpinyin: Update to 1.10.0.
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.10.0.
[arguments]: Remove "autogen" phase.
[native-inputs]: Remove autoconf, automake, and libtool.
2018-05-30 07:42:20 +02:00
Ricardo Wurmus 8738c2b342
gnu: libpinyin: Update to 2.2.0.
* gnu/packages/ibus.scm (libpinyin): Update to 2.2.0.
[arguments]: Remove.
[inputs]: Remove model.
[native-inputs]: Remove autoconf, automake, and libtool.
2018-05-30 07:42:19 +02:00
Mark H Weaver 7627705293
gnu: vlc: Update to 3.0.3, and add more inputs.
Co-authored-by: Roel Janssen <roel@gnu.org>

* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg.  Replace lua-5.1 with
lua-5.2.  Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags.  In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt".  Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'.  Add new
'wrap-executable' phase.
2018-05-30 00:17:35 -04:00
Mark H Weaver 7cb8d092d5
gnu: linux-libre@4.1: Update to 4.1.52.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.52.
2018-05-29 23:16:14 -04:00
Mark H Weaver c0d7c1244a
Merge branch 'master' into core-updates 2018-05-29 21:20:47 -04:00
David Thompson f274f0774d
gnu: tiled: Update to 1.1.5.
* gnu/packages/game-development.scm (tiled): Update to 1.1.5.
2018-05-29 21:20:27 -04:00
Rouby Pierre-Antoine 9cf879a573
gnu: Add go-github-com-gorilla-context.
* gnu/packages/golang.scm (go-github-com-gorilla-context): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine daed2c5e6a
gnu: Add go-github-com-google-gofuzz.
* gnu/packages/golang.scm (go-github-com-google-gofuzz): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 73fe19ef28
gnu: Add go-github-com-google-cadvisor.
* gnu/packages/golang.scm (go-github-com-google-cadvisor): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 7979f7df9a
gnu: Add go-github-com-emicklei-go-restful.
* gnu/packages/golang.scm (go-github-com-emicklei-go-restful): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 67836c5956
gnu: Add go-github-com-blang-semver.
* gnu/packages/golang.scm (go-github-com-blang-semver): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine 7c2ebbd4a6
gnu: Add go-github-com-urfave-cli.
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:05 -04:00
Kei Kebreau 5a14e81e41
gnu: Update shogun to 6.1.3.
* gnu/packages/machine-learning.scm (shogun): Update to 6.1.3.
[source]: Update snippet to remove proprietary software.
[arguments]: Rewrite list of symlinks in 'delete-broken-symlinks' phase.
Rewrite file lists given to substitute* in 'change-R-target-path' and
'fix-octave-modules' phases.  Adjust 'fix-octave-modules' for the update.
Add 'move-rxcpp' phase.  Rewrite configure-flags for the update.
[inputs]: Add eigen.
[native-inputs]: Add rxcpp.
2018-05-29 18:20:38 -04:00
Kei Kebreau 3771000f89
gnu: swig: Patch for Octave 4.4.
* gnu/packages/swig.scm (swig)[source]: Add patch.
* gnu/packages/patches/swig-octave-patches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-05-29 18:20:38 -04:00
Ricardo Wurmus 44884a9df8
gnu: eigen: Include unsupported features.
* gnu/packages/algebra.scm (eigen)[source]: Do not build the tests for
unsupported features, but include the files.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-05-29 18:20:38 -04:00
Kei Kebreau 3a354e104a
gnu: Add rxcpp.
* gnu/packages/machine-learning.scm (rxcpp): New variable.
2018-05-29 18:20:37 -04:00
Kei Kebreau de658cc2f8
gnu: octave: Update to 4.4.0.
* gnu/packages/maths.scm (octave): Update to 4.4.0.
2018-05-29 18:20:37 -04:00
Leo Famulari f0dd127d0a
gnu: mpd: Update to 0.20.20.
* gnu/packages/mpd.scm (mpd): Update to 0.20.20.
2018-05-29 18:00:34 -04:00
Ricardo Wurmus e5bbfc7df0
gnu: mypaint-brushes: Fetch source from git.
* gnu/packages/gimp.scm (mypaint-brushes)[source]: Fetch source from git.
2018-05-29 23:24:32 +02:00
Ricardo Wurmus 5686be393b
gnu: mypaint-brushes: Fix build.
* gnu/packages/gimp.scm (mypaint-brushes)[arguments]: Remove bootstrap phase;
add "relax-dependency-version" phase.
2018-05-29 23:24:32 +02:00
Ricardo Wurmus d2e1da18b0
gnu: python-pygobject: Delete broken tests.
* gnu/packages/glib.scm (python-pygobject)[arguments]: Add phase
"delete-broken-tests".
2018-05-29 23:24:32 +02:00
Ricardo Wurmus 1b043aeb85
gnu: python2-pygobject: Add native-inputs.
* gnu/packages/glib.scm (python2-pygobject)[native-inputs]: New field.
2018-05-29 23:17:48 +02:00
Ricardo Wurmus 59f6dfe552
gnu: python-pygobject: Update to 3.28.2.
* gnu/packages/glib.scm (python-pygobject): Update to 3.28.2.
[native-inputs]: Add python-pytest.
2018-05-29 22:43:00 +02:00
Ricardo Wurmus 660c9b4788
gnu: modem-manager: Fix build.
* gnu/packages/freedesktop.scm (modem-manager)[arguments]: Add configure flag
to avoid aborting on certain warnings.
2018-05-29 22:11:04 +02:00
Leo Famulari b50196c3a4
gnu: Git: Update to 2.17.1 [fixes CVE 2018-{11234,11235}].
* gnu/packages/version-control.scm (git): Update to 2.17.1.
2018-05-29 16:00:02 -04:00
Tobias Geerinckx-Rice 0eeade9b53
gnu: pan: Update to 0.145.
* gnu/packages/mail.scm (pan): Update to 0.145.
2018-05-29 20:43:38 +02:00
Tobias Geerinckx-Rice 3b68a9b66e
gnu: disorderfs: Update to 0.5.3.
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.3.
[source]: Update upstream URI and re-use VERSION.
2018-05-29 20:43:37 +02:00
Tobias Geerinckx-Rice e5ab03b51d
gnu: thefuck: Update to 3.27.
* gnu/packages/admin.scm (thefuck): Update to 3.27.
2018-05-29 20:43:37 +02:00
Leo Famulari e3d779cc93
gnu: Wireshark: Update to 2.6.1.
* gnu/packages/networking.scm (wireshark): Update to 2.6.1.
2018-05-29 14:39:22 -04:00
Leo Famulari 4d0f463d6b
gnu: xdg-utils: Update to 1.1.3 [fixes CVE-2017-18266].
* gnu/packages/freedesktop.scm (xdg-utils): Update to 1.1.3.
2018-05-29 14:39:22 -04:00
Clément Lassieur 7c1445f86a
gnu: Add missing copyright line.
* gnu/packages/engineering.scm: Add missing copyright line for commit 6cedd61.
2018-05-29 15:43:13 +02:00
Ricardo Wurmus b347317ae6
Merge branch 'master' into core-updates 2018-05-29 15:41:06 +02:00
Clément Lassieur 6cedd61177
gnu: librecad: Fix build against Qt 5.11.
* gnu/packages/engineering.scm (librecad)[arguments]: Add missing headers.
2018-05-29 15:25:23 +02:00
Ricardo Wurmus 80e99aa467
gnu: emacs-s: Fix tests.
* gnu/packages/emacs.scm (emacs-s)[arguments]: Use full emacs package to fix
tests.
2018-05-29 14:05:11 +02:00
Ricardo Wurmus 06f863791a
gnu: emacs-dash: Update to 2.14.1.
* gnu/packages/emacs.scm (emacs-dash): Update to 2.14.1.
[source]: Fetch from git.
2018-05-29 14:05:11 +02:00
Ricardo Wurmus bd6a699d73
gnu: emacs-minimal: Fix build by disabling gnutls support.
This is a follow-up to bb82c3d42b.

* gnu/packages/emacs.scm (emacs-minimal)[arguments]: Pass configure flag to
indicate that gnutls support has intentionally been disabled.
2018-05-29 14:05:11 +02:00
Mathieu Othacehe 2206c7ad93
gnu: emacs: Update to 26.1.
* gnu/packages/emacs.scm (emacs): Update to 26.1,
[arguments]: disable tests as they do not exist in release.
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: Update patch
indentation and line numbers.
2018-05-29 14:05:11 +02:00
Vagrant Cascadian 6fe1657705
system: Add u-boot-puma-rk3399.
* gnu/packages/bootloaders.scm (u-boot-puma-rk3399): New variable.
(make-u-boot-package)[arguments]: Add '.rksd' files to the files installed
during custom 'install phase.
* gnu/bootloader/u-boot.scm (u-boot-puma-rk3399-bootloader):
New exported variable.
* gnu/system/install.scm (rk3399-puma-installation-os):
New exported variable.
* gnu/packages/firmware.scm (arm-trusted-firmware-puma-rk3399): New variable.
(rk3399-cortex-m0): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-05-29 10:46:13 +02:00
Leo Famulari 2a49aee4d1
gnu: khal: Update to 0.9.9.
* gnu/packages/calendar.scm (khal): Update to 0.9.9.
2018-05-29 00:41:32 -04:00
Mark H Weaver 82b695b834
Merge branch 'master' into core-updates 2018-05-28 20:45:37 -04:00
Danny Milosavljevic ee3c8fbee2
gnu: make-u-boot-package: Sort printed configurations case-insensitively.
* gnu/packages/bootloaders.scm (make-u-boot-package): Sort printed
configurations case-insensitively.
2018-05-29 00:37:10 +02:00
Danny Milosavljevic 65212c42cd
gnu: u-boot-tools: Enable tests.
* gnu/packages/bootloaders.scm (u-boot-tools)[native-inputs]: Add openssl,
python2-coverage, python2-pytest, sdl.
[arguments]<#:make-flags>: Remove NO_SDL.
[arguments]<#:test-target>: Change to "tests".
[arguments]<#:phases>[patch]: New phase.
[arguments]<#:phases>[check]: Replace and move.
2018-05-28 23:52:07 +02:00
Clément Lassieur a234ae38ba
gnu: wireshark: Fix build against Qt 5.11.
* gnu/packages/networking.scm (wireshark)[arguments]: Add a 'patch-source'
phase that includes missing headers.
2018-05-28 23:45:50 +02:00
Clément Lassieur 77cc8778a3
gnu: supercollider: Remove broken Qt dependency.
As suggested by Ricardo Wurmus.

This also removes IDE support.

* gnu/packages/audio.scm (supercollider)[arguments]: Add "-DSC_QT=off" to
configure flags.
[native-inputs]: Remove QTTOOLS.
[inputs]: Remove QTBASE, QTWEBKIT, QTSENSORS, QTDECLARATIVE and QTLOCATION.
2018-05-28 22:49:55 +02:00
Clément Lassieur c7d901c130
gnu: vlc: Fix build against Qt 5.11.
* gnu/packages/video.scm (vlc)[arguments]: Add missing headers.
2018-05-28 22:40:53 +02:00
Mathieu Othacehe a338b6f51d
Revert "gnu: emacs: Update to 26.1."
This reverts commit bb82c3d42b. This commit
needs probably to be done on core-updates.
2018-05-28 19:10:17 +02:00
Mathieu Othacehe bb82c3d42b
gnu: emacs: Update to 26.1.
* gnu/packages/emacs.scm (emacs): Update to 26.1,
[arguments]: disable tests as they do not exist in release.
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: Update patch
indentation and line numbers.
2018-05-28 18:40:21 +02:00
Ricardo Wurmus 3ec07ced8a
gnu: Add singularity.
* gnu/packages/linux.scm (singularity): New variable.
2018-05-28 17:36:09 +02:00
Ricardo Wurmus e580597d25
gnu: Add squashfs-tools-next.
* gnu/packages/compression.scm (squashfs-tools-next): New variable.
2018-05-28 17:36:08 +02:00
Clément Lassieur fdb85546dd
gnu: gajim: Update to 1.0.3.
* gnu/packages/messaging.scm (gajim): Update to 1.0.3.
2018-05-28 16:44:05 +02:00
Clément Lassieur 135745939d
gnu: python-nbxmpp: Update to 0.6.6.
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.6.
2018-05-28 16:43:55 +02:00
Mark H Weaver fe365a3d0e
gnu: libssh2: Fix build on MIPS systems.
* gnu/packages/ssh.scm (libssh2)[arguments]: When building for MIPS, replace
the existing bootstrap phase instead of adding a new 'autoreconf' phase (in
the wrong place).
2018-05-28 09:06:13 -04:00
Fis Trivial 70770b9381
gnu: Add xtensor.
* gnu/packages/algebra.scm (xtensor): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:20:50 +02:00
Fis Trivial 6f3c850618
gnu: Add xtl.
* gnu/packages/cpp.scm (xtl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:19:29 +02:00
Fis Trivial e3c0676adf
gnu: Add json-modern-cxx.
* gnu/packages/cpp.scm (json-modern-cxx): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:18:51 +02:00
Fis Trivial 385357c0d7
gnu: Add fifo-map.
* gnu/packages/cpp.scm (fifo-map): New variable.
* gnu/packages/patches/fifo-map-fix-flags-for-gcc.patch: New file.
* gnu/packages/patches/fifo-map-remove-catch.hpp.patch: New file.
* gnu/local.mk: Add new patch files.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:48:52 +02:00
Fis Trivial ad8a4d6dc8
gnu: Add amalgamate.
This commit also re-orders some module statements.

* gnu/packages/code.scm (amalgamate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:45:39 +02:00
Fis Trivial 56e72c0084
gnu: Add catch-framework2.
* gnu/packages/check.scm (catch-framework2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:39:57 +02:00
Mark H Weaver 25816c4306
gnu: icecat: Add more fixes from upstream mozilla-esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-05-27 17:39:29 -04:00
Pierre Langlois 8a6d16b897
gnu: clementine: Update snapshot.
* gnu/package/music.scm (clementine): Update snapshot to 4619a4c1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:06 +03:00
Pierre Langlois 1222a64c02
gnu: libechonest: Remove package.
It appears the "EchoNest" service isn't available anymore which makes this
package obsolete.

* gnu/packages/music.scm (libechonest): Remove variable.
(clementine)[inputs]: Remove libechonest.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:05 +03:00
Pierre Langlois 01c4869003
gnu: libmygpo-qt: Fix Qt 5.11 build.
The update to Qt 5.11.0 broke libmygpo-qt. It turned it was using a deprecated
CMake function (qt5_use_moduldes).  Let's pick up two upstream patches that
fix the issue: https://github.com/gpodder/libmygpo-qt/pull/15

As mentioned in the the pull request, there is now a test failure but it looks
harmless.

* gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch,
gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/music.scm (libmygpo-qt)[source]: Add patches.
[arguments]: Build tests but do not run them.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:01 +03:00
Julien Lepiller 2101cc3fb6
gnu: gnu: Make alsa find its plugins by setting ALSA_PLUGIN_DIR.
* gnu/packages/patches/alsa-lib-add-environment-variable.patch: New
file.
* gnu/packages/linux.scm (alsa-lib)[source]: Use it.
[native-search-paths]: Add ALSA_PLUGIN_DIR.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-05-27 19:05:34 +02:00
Julien Lepiller 3a69f5f2d3
gnu: Add java-logback-classic.
* gnu/packages/java.scm (java-logback-classic): New variable.
2018-05-27 18:47:15 +02:00
Julien Lepiller 7d8207a4c1
gnu: Add java-logback-core.
* gnu/packages/java.scm (java-logback-core): New variable.
2018-05-27 18:47:09 +02:00
Julien Lepiller 3402e651c8
gnu: Add java-janino.
* gnu/packages/java.scm (java-janino): New variable.
2018-05-27 18:47:07 +02:00
Julien Lepiller 3fa18fe796
gnu: Add java-commons-compiler.
* gnu/packages/java.scm (java-commons-compiler): New variable.
2018-05-27 18:47:05 +02:00
Julien Lepiller 66006fe526
gnu: Add java-commons-jxpath.
* gnu/packages/java.scm (java-commons-jxpath): New variable.
2018-05-27 18:47:03 +02:00
Julien Lepiller 7049dea185
gnu: Add java-eclipse-sisu-plexus.
* gnu/packages/java.scm (java-eclipse-sisu-plexus): New variable.
2018-05-27 18:47:01 +02:00
Julien Lepiller 1a1810f534
gnu: Add java-eclipse-sisu-inject.
* gnu/packages/java.scm (java-eclipse-sisu-inject): New variable.
2018-05-27 18:46:58 +02:00
Julien Lepiller a1a5ef2094
gnu: Add java-jsr250.
* gnu/packages/java.scm (java-jsr250): New variable.
2018-05-27 18:46:38 +02:00
Rutger Helling 9b9db6c482
gnu: xonotic: Correct licenses.
* gnu/packages/games.scm (xonotic-data)[license]: Refer to correct file.
* gnu/packages/games.scm (xonotic)[license]: Refer to correct file.
2018-05-27 10:24:06 +02:00
Efraim Flashner 865003433f
gnu: qtconnectivity: Enable previously failing test.
* gnu/packages/qt.scm (qtconnectivity)[arguments]: Remove custom
'disable-failing-tests phase.
2018-05-27 10:21:33 +03:00
Efraim Flashner 1f52eb7be7
gnu: qt: Update to 5.11.0.
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2,
qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d,
qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech):
Update to 5.11.0.
[source]: Update source uri.
(qtbase)[source]: Don't remove bundled sqlite.
[inputs]: Remove sqlite.
[arguments]: Use 'invoke'. Use bundled sqlite.
(qtsvg, qtmultimedia, qtcanvas3d)[arguments]: Use 'invoke'.
(qtremoteobjects)[arguments]: Skip new integration test.
2018-05-27 09:05:56 +03:00
Mark H Weaver 1640f16e78
Merge branch 'master' into core-updates 2018-05-27 01:26:09 -04:00
Mark H Weaver a4e45acdc0
gnu: linux-libre: Update to 4.16.12.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.12.
(%linux-libre-hash): Update hash.
2018-05-27 01:23:26 -04:00
Mark H Weaver 52a1379814
gnu: linux-libre@4.14: Update to 4.14.44.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.44.
(%linux-libre-4.14-hash): Update hash.
2018-05-27 01:22:36 -04:00