Marius Bakke
9526d86141
gnu: libndp: Update to 1.7.
...
* gnu/packages/networking.scm (libndp): Update to 1.7.
2018-06-11 18:05:54 +02:00
Marius Bakke
f24cfb6cc3
gnu: webkitgtk: Update to 2.20.3 [security fixes].
...
Fixes CVE-2018-4190, CVE-2018-4199, CVE-2018-4218, CVE-2018-4222,
CVE-2018-4232, CVE-2018-4233, CVE-2018-4246 and CVE-2018-11646.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.20.3.
2018-06-11 17:56:56 +02:00
Marius Bakke
6e5a6e641a
gnu: efivar: Update to 36.
...
* gnu/packages/linux.scm (efivar): Update to 36.
2018-06-11 17:54:31 +02:00
Marius Bakke
21a21c20da
gnu: ldb: Delete bundled libraries from the source.
...
* gnu/packages/samba.scm (ldb)[source](snippet): New field.
2018-06-11 17:54:30 +02:00
Marius Bakke
4ee30d6aa2
gnu: ldb: Update to 1.4.0.
...
* gnu/packages/samba.scm (ldb): Update to 1.4.0.
[inputs]: Add LMDB.
2018-06-11 17:54:30 +02:00
Pierre Neidhardt
8bf7f741e9
gnu: Add Add emacs-wgrep-helm.
...
* gnu/packages/emacs.scm (emacs-wgrep-helm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
50a1f9264d
gnu: Add emacs-package-lint.
...
* gnu/packages/emacs.scm (emacs-package-lint): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
00f3774067
gnu: Add emacs-image+.
...
* gnu/packages/emacs.scm (emacs-image+): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
bdfebc4b74
gnu: Add emacs-helm-pass.
...
* gnu/packages/emacs.scm (emacs-helm-pass): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
2f3aa1d309
gnu: Add emacs-helm-mu.
...
* gnu/packages/emacs.scm (emacs-helm-mu): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Pierre Neidhardt
1e75852629
gnu: Add emacs-helm-ls-git.
...
* gnu/packages/emacs.scm (emacs-helm-ls-git): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:02 +02:00
Rouby Pierre-Antoine
76a2b27897
gnu: Add go-github-com-spf13-pflag.
...
* gnu/packages/golang.scm (go-github-com-spf13-pflag): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine
bcb2179085
gnu: Add go-github-com-jonboulle-clockwork.
...
* gnu/packages/golang.scm (go-github-com-jonboulle-clockwork): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Rouby Pierre-Antoine
e8cdf560b0
gnu: Add go-github-com-gorilla-mux.
...
* gnu/packages/golang.scm (go-github-com-gorilla-mux): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-11 15:19:01 +02:00
Tobias Geerinckx-Rice
14299d21f2
gnu: iproute2: Update to 4.17.0.
...
* gnu/packages/linux.scm (iproute): Update to 4.17.0.
2018-06-11 14:08:31 +02:00
Tobias Geerinckx-Rice
41ea698a4b
gnu: libfilezilla: Update to 0.12.3.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.3.
2018-06-11 14:08:24 +02:00
Oleg Pykhalov
e0cc7f669b
gnu: emacs-emacsql: Replace mysql with mariadb input.
...
* gnu/packages/emacs.scm (emacs-emacsql)[inputs]: Replace 'mysql' with
'mariadb'.
2018-06-11 11:47:50 +03:00
Ludovic Courtès
8b3aea9d9e
gnu: guix: Update to 77a1aac
.
...
* gnu/packages/package-management.scm (guix): Update to 77a1aac
.
2018-06-10 23:32:00 +02:00
宋文武
670a5e5430
gnu: keepalived: Install info documentation.
...
* gnu/packages/cluster.scm (keepalived)[arguments]: Add phases 'build-info'
and 'install-info'.
[native-inputs]: Add texinfo.
2018-06-10 23:42:14 +08:00
宋文武
af09dabf70
gnu: Add keepalived.
...
* gnu/packages/cluster.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-06-10 22:57:01 +08:00
宋文武
4dd1fb79f7
gnu: Add libnfnetlink.
...
* gnu/packages/linux.scm (libnfnetlink): New variable.
2018-06-10 22:57:01 +08:00
Danny Milosavljevic
fc51c11b9d
gnu: mumble: Fix build with Boost 1.66.
...
Fixes <https://bugs.gnu.org/31775 >.
* gnu/packages/patches/mumble-1.2.19-abs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/telephony.scm (mumble)[source]: Add it.
2018-06-10 16:03:35 +02:00
宋文武
e6c8199b66
gnu: nix: Update to 2.0.4.
...
* gnu/packages/package-management.scm (nix): Update to 2.0.4.
2018-06-10 21:38:32 +08:00
Nicolas Goaziou
1bfde769f6
gnu: musescore: Fix build against Qt 5.11.
...
* gnu/packages/music.scm (musescore)[arguments]: Remove Webkit support, since
it is replaced with Qt WebEngine in Qt 5.11. Add missing include line.
[inputs]: Remove "qtwekbit".
2018-06-10 13:47:25 +02:00
Alex Vong
09b21b77cc
gnu: heimdal: Update to 7.5.0.
...
* gnu/packages/kerberos.scm (heimdal): Update to 7.5.0.
[source]: Update source uri. Remove patches.
[arguments]: Adjust #:configure-flags and build phases accordingly.
[inputs]: Add sqlite.
[native-inputs]: Add texinfo and unzip.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-10 16:00:45 +08:00
Kei Kebreau
b7e2fcf05e
gnu: milkytracker: Update to 1.02.00.
...
* gnu/packages/music.scm (milkytracker): Update to 1.02.00.
2018-06-09 18:32:47 -04:00
Leo Famulari
65956ad352
gnu: GnuPG 1.4: Fix CVE-2018-12020.
...
* gnu/packages/patches/gnupg-1.4-CVE-2018-12020.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg-1)[source]: Use it.
2018-06-09 17:50:03 -04:00
Julien Lepiller
5aa4ea6a2b
gnu: Add maven-resolver-provider.
...
* gnu/packages/maven.scm (maven-resolver-provider): New variable.
2018-06-09 23:25:35 +02:00
Julien Lepiller
b218504026
gnu: Add maven-shared-utils.
...
gnu/packages/maven.scm (maven-shared-utils): New variable.
2018-06-09 23:25:26 +02:00
Julien Lepiller
18736663ed
gnu: Add maven-repository-metadata.
...
* gnu/packages/maven.scm (maven-repository-metadata): New variable.
2018-06-09 23:25:24 +02:00
Julien Lepiller
90fe8797cd
gnu: Add maven-resolver-impl.
...
* gnu/packages/maven.scm (maven-resolver-impl): New variable.
2018-06-09 23:25:21 +02:00
Julien Lepiller
516db3b97a
gnu: Add maven-model-builder.
...
* gnu/packages/maven.scm (maven-model-builder): New variable.
2018-06-09 23:25:18 +02:00
Julien Lepiller
3a5572ae76
gnu: Add maven-settings-builder.
...
* gnu/packages/maven.scm (maven-settings-builder): New variable.
2018-06-09 23:25:16 +02:00
Julien Lepiller
18110e45a6
gnu: Add maven-settings.
...
* gnu/packages/maven.scm (maven-settings): New variable.
2018-06-09 23:25:15 +02:00
Julien Lepiller
f084641a01
gnu: Add maven-builder-support.
...
* gnu/packages/maven.scm (maven-builder-support): New variable.
2018-06-09 23:25:13 +02:00
Julien Lepiller
d55503a6ab
gnu: Add maven-model.
...
* gnu/packages/maven.scm (maven-model): New variable.
2018-06-09 23:25:11 +02:00
Julien Lepiller
458687d586
gnu: Add maven-artifact.
...
* gnu/packages/maven.scm (maven-artifact): New variable.
* gnu/packages/patches/maven-generate-component-xml.patch: New file.
* gnu/packages/patches/maven-generate-javax-inject-named.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-06-09 23:24:52 +02:00
Julien Lepiller
816db9668c
gnu: po4a: Update to 0.53.
...
* gnu/packages/gettext.scm (po4a): Update to 0.53.
[source]: Update to newer github source location.
[arguments]: Disable two failing tests.
2018-06-09 23:08:13 +02:00
Efraim Flashner
8fc55f36c4
gnu: terminology: Update to 1.2.1.
...
* gnu/packages/enlightenment.scm (terminology): Update to 1.2.1.
2018-06-09 23:01:17 +03:00
Efraim Flashner
216c726673
gnu: gnupg: Update to 2.2.8 (fixes CVE-2018-12020).
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.8.
2018-06-09 22:46:22 +03:00
Christopher Baines
5bf37e9c38
gnu: openttd: Add patch to fix compilation.
...
* gnu/packages/games.scm (openttd)[source]: Add a unreleased upstream patch to
fix building OpenTTD with ICU 61.
2018-06-09 12:25:32 +01:00
Christopher Baines
aa7587633b
gnu: rhythmbox: Add a unreleased patch from upstream.
...
* gnu/packages/gnome.scm (rhythmbox)[source]: Add patch from the upstream Git
repository, as without this, the package fails to build.
2018-06-09 11:11:28 +01:00
宋文武
d6fb0985a6
gnu: btrfs-progs: Fix build by disabling tests.
...
* gnu/packages/linux.scm (btrfs-progs)[#:arguments]: Add '#:tests? #f'.
2018-06-09 17:18:27 +08:00
宋文武
927846b3ab
gnu: lxc: Update to 3.0.1.
...
* gnu/packages/virtualization.scm (lxc): Update to 3.0.1.
2018-06-09 15:45:16 +08:00
Rutger Helling
945b119fac
gnu: nzbget: Update to 20.0.
...
* gnu/packages/networking.scm (nzbget): Update to 20.0.
2018-06-09 02:30:07 +02:00
Nicolas Goaziou
c8b2fd2866
gnu: mame: New variable.
...
* gnu/packages/emulators.scm (mame): New variable.
2018-06-09 00:20:00 +02:00
Nicolas Goaziou
d597dda6e0
gnu: asio: New variable.
...
* gnu/packages/networking.scm (asio): New variable.
2018-06-09 00:20:00 +02:00
Oleg Pykhalov
da23cc000e
gnu: Add emacs-ivy-yasnippet.
...
* gnu/packages/emacs.scm (emacs-ivy-yasnippet): New public variable.
2018-06-08 23:19:38 +03:00
Gábor Boskovits
c315d37058
gnu: exim: Add libnsl input.
...
* gnu/packages/mail.scm (exim)[inputs]: Add libnsl.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2018-06-08 22:20:28 +03:00
Oleg Pykhalov
ca82bdfdfb
gnu: twitchy: Install 'rofi-twitchy'.
...
* gnu/packages/video.scm (twitchy): Install 'rofi-twitchy'.
2018-06-08 20:30:29 +03:00
Ricardo Wurmus
cbc1c27b67
gnu: rcas-web: Update to 0.0.5.
...
* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.0.5.
2018-06-08 17:39:24 +02:00
Kei Kebreau
129948dcbd
gnu: debootstrap: Substitute chroot in 'patch-source' phase.
...
* gnu/packages/debian.scm (debootstrap)[arguments]: In 'patch-source' phase,
substitute chroot in the debootstrap script file.
[inputs]: Add coreutils.
2018-06-08 11:07:51 -04:00
Rouby Pierre-Antoine
ad3a580716
gnu: hpcguix-web: Update to commit '87cb516'.
...
* gnu/packages/web.scm (hpcguix-web): Update to commit '87cb516'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:24 +02:00
Pierre Neidhardt
daa9e89d56
gnu: Add emacs-helm-flycheck.
...
* gnu/packages/emacs.scm (emacs-helm-flycheck): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:24 +02:00
Pierre Neidhardt
49fd039217
gnu: Add emacs-helm-exwm.
...
* gnu/packages/emacs.scm (emacs-helm-exwm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt
5a949f5b30
gnu: Add emacs-helm-emms.
...
* gnu/packages/emacs.scm (emacs-helm-emms): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt
0b4e4efe97
gnu: Add emacs-helm-descbinds.
...
* gnu/packages/emacs.scm (emacs-helm-descbinds): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt
3540c6eb2b
gnu: Add emacs-helm-company.
...
* gnu/packages/emacs.scm (emacs-helm-company): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt
2dcea9b446
gnu: Add emacs-google-translate.
...
* gnu/packages/emacs.scm (emacs-google-translate): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Pierre Neidhardt
a62d872fdf
gnu: Add emacs-gif-screencast.
...
* gnu/packages/emacs.scm (emacs-gif-screencast): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-08 17:04:23 +02:00
Tobias Geerinckx-Rice
fafeeaa233
gnu: ruby-rack-protection: Update to 2.0.2.
...
* gnu/packages/ruby.scm (ruby-rack-protection): Update to 2.0.2.
2018-06-08 16:00:18 +02:00
Tobias Geerinckx-Rice
d2a48984fc
gnu: r-fastcluster: Update to 1.1.25.
...
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.25.
2018-06-08 16:00:18 +02:00
Tobias Geerinckx-Rice
a1eabab1a3
gnu: opensmtpd: Clarify phase name.
...
* gnu/packages/mail.scm (opensmtpd)[arguments]: Rename
‘install-compatibilitymode’ to ‘install-compatibility-links’ and avoid
needless abbrevs while at it.
2018-06-08 16:00:17 +02:00
Tobias Geerinckx-Rice
19fed04915
gnu: opensmtpd: Patch FHS assumptions.
...
This fixes the following failure...
# smtpctl show message 9275c3fbeccbae93
execl: No such file or directory
...due to the absence of ‘/bin/cat’ on GuixSD.
* gnu/packages/mail.scm (opensmtpd)[arguments]: Add
‘patch-FHS-file-names’ phase.
2018-06-08 16:00:17 +02:00
Oleg Pykhalov
2dfb9bbf23
gnu: duplicity: Update to 0.7.17.
...
* gnu/packages/backup.scm (duplicity): Update to 0.7.17.
2018-06-08 16:25:44 +03:00
Oleg Pykhalov
c0888cefdf
gnu: Add python-fasteners.
...
* gnu/packages/python.scm (python-fasteners, python2-fasteners): New
variables.
2018-06-08 16:25:44 +03:00
Ludovic Courtès
849a1399ca
gnu: doxygen: Work around GCC ICE on armhf-linux.
...
Reported by Mark H Weaver <mhw@netris.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=31708#10 >.
* gnu/packages/patches/doxygen-gcc-ice.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/documentation.scm (doxygen)[inputs]: Add "gcc-ice-patch"
on armhf-* only.
[arguments]: Add 'apply-gcc-patch' phase on armhf-* only.
2018-06-08 15:23:39 +02:00
宋文武
cd8ece22bf
gnu: redis: Update to 4.0.9.
...
* gnu/packages/database.scm (redis): Update to 4.0.9.
2018-06-08 20:27:30 +08:00
Paul Garlick
0b88f7e7a7
gnu: ikiwiki: Add inputs for CGI script and remove duplicate input.
...
* gnu/packages/web.scm (ikiwiki)[inputs]: Add perl-cgi-formbuilder and
perl-db-file. Remove perl-uri duplicate. Sort 'perl-*' inputs
alphabetically.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-08 20:27:30 +08:00
Paul Garlick
f52de1e17f
gnu: Add perl-cgi-formbuilder.
...
* gnu/packages/web.scm (perl-cgi-formbuilder): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-06-08 20:27:30 +08:00
Mark H Weaver
0b2fd1600f
gnu: linux-libre@4.9: Update to 4.9.107.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.107.
2018-06-07 23:38:28 -04:00
Mark H Weaver
b09dc3b911
gnu: linux-libre@4.4: Update to 4.4.136.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.136.
2018-06-07 23:37:46 -04:00
Tobias Geerinckx-Rice
20860819d6
gnu: ruby-asciidoctor: Update description.
...
Synchronise with upstream README.
* gnu/packages/ruby.scm (ruby-asciidoctor)[description]: Add PDF.
2018-06-07 23:58:26 +02:00
Tobias Geerinckx-Rice
4ee41a6ac1
gnu: inxi: Fix up synopsis & description.
...
* gnu/packages/admin.scm (inxi)[synopsis]: Fix typo.
[description]: Use @code{}.
2018-06-07 23:58:26 +02:00
Tobias Geerinckx-Rice
7a83eb37ad
gnu: libngspice: Update to 28.
...
* gnu/packages/engineering.scm (libngspice): Update to 28.
2018-06-07 23:58:25 +02:00
Tobias Geerinckx-Rice
ec425ca3a6
gnu: libngspice: Use C-locale date format.
...
* gnu/packages/engineering.scm (libngspice): Use a more standard
(C-locale) date format when forging timestamps.
2018-06-07 23:57:39 +02:00
Tobias Geerinckx-Rice
10ee03c1df
gnu: python-pyxdg: Return #t from phases.
...
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-06-07 23:57:39 +02:00
Tobias Geerinckx-Rice
5f82a9d5cc
gnu: seabios: Return #t from all phases.
...
* gnu/packages/firmware.scm (seabios)[arguments]: Return #t from
the ‘install’ phase.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice
edf075987c
gnu: gnuastro: Add TIFF support.
...
This adds ~3.6 MiB (3.6%) to gnuastro's now-103.9 MiB closure.
* gnu/packages/astronomy.scm (gnuastro)[inputs]: Add libtiff and zlib.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice
33031faa4e
gnu: xmlsec: Update to 1.2.26.
...
* gnu/packages/xml.scm (xmlsec): Update to 1.2.26.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice
6d727bf4c7
gnu: xcalib: Update to 0.10.
...
* gnu/packages/xdisorg.scm (xcalib): Update to 0.10.
[home-page]: Switch to new upstream.
[source]: Use GIT-FETCH. Add xcalib-update-man-page.patch.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old build system's arguments.
[inputs]: Add libxrandr.
2018-06-07 23:57:38 +02:00
Tobias Geerinckx-Rice
d35135fa9e
gnu: perl-net-http: Update to 6.18.
...
* gnu/packages/web.scm (perl-net-http): Update to 6.18.
2018-06-07 23:57:37 +02:00
Tobias Geerinckx-Rice
c727262d5f
gnu: perl-cgi: Update to 4.38.
...
* gnu/packages/web.scm (perl-cgi): Update to 4.38.
2018-06-07 23:57:37 +02:00
Danny Milosavljevic
5e88194661
gnu: qucs: Patch bootstrapping scripts.
...
* gnu/packages/engineering.scm (qucs)[arguments]<#:phases>[patch-bootstrap]:
New phase.
2018-06-07 23:23:40 +02:00
Theodoros Foradis
394b89ae04
gnu: qucs-s: Update to 0.0.20.
...
* gnu/packages/engineering.scm (qucs-s): Update to 0.0.20.
[arguments]: Modify patch-paths phase to work with version 0.0.20.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis
fc3c88ec9c
gnu: lapack-3.5: Delete package.
...
* gnu/packages/maths.scm (lapack-3.5): Delete package.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis
ac04601a82
gnu: xyce-serial: Update to 6.8.
...
* gnu/packages/engineering.scm (xyce-serial): Update to 6.8.
[inputs]: Replace lapack-3.5 with lapack.
* gnu/packages/engineering.scm (xyce-prallel):
[arguments]: Update configure flags to work with 6.8 version.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis
d73482b408
gnu: trilinos-serial-xyce: Update to 12.12.1.
...
* gnu/packages/engineering.scm (trilinos-serial-xyce): Update to 12.12.1.
[arguments]: Add delete-tribits phase.
[inputs]: Replace lapack-3.5 with lapack.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis
ecf8d2a935
gnu: libngspice: Update to 27.
...
* gnu/packages/engineering.scm (libngspice): Update to 27.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:40 +02:00
Theodoros Foradis
4f12a62d18
gnu: qucs: Build from git to fix bug.
...
* gnu/packages/engineering.scm (qucs): Add TODO comment.
[source]: Use git commit b4f27d9.
[native-inputs]: Add autoconf, automake, flex and bison.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-06-07 23:23:34 +02:00
Ricardo Wurmus
bcc2e0ed2e
gnu: r-rcas: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.6.0.
[source]: Fetch from bioconductor.
[native-inputs]: Remove r-knitr.
[propagated-inputs]: Add r-biocgenerics, r-biostrings, r-cowplot, r-dbi,
r-ggseqlogo, r-knitr, r-pheatmap, r-proxy, r-rsqlite, and r-s4vectors.
2018-06-07 22:51:00 +02:00
Ricardo Wurmus
e67acae706
gnu: Add r-ggseqlogo.
...
* gnu/packages/cran.scm (r-ggseqlogo): New variable.
2018-06-07 22:51:00 +02:00
Rutger Helling
8ec919404f
gnu: Add deprecated-package vulkan-icd-loader.
...
* gnu/packages/vulkan.scm (vulkan-icd-loader): New variable.
2018-06-07 13:34:13 +02:00
Efraim Flashner
bb63502f0b
gnu: ovmf: Simplify build.
...
* gnu/packages/firmware.scm (ovmf)[arguments]: Change custom 'build-ia32
phase to replace 'build. Remove unneeded substitutions in 'configure,
'build and 'build-x64. Shorten 'build and 'build-x64 phases.
2018-06-07 12:20:47 +03:00
Ricardo Wurmus
6d095c4cab
gnu: star: Update to 2.6.0c.
...
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c.
[source]: Fetch from git.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus
54179e2463
gnu: libreoffice: Update to 6.0.5.1.
...
* gnu/packages/patches/libreoffice-icu.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.0.5.1.
[source]: Add patch.
[inputs]: Add libepubgen and libqxp.
[arguments]: Adjust "prepare-src" phase.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus
e47e1f3311
gnu: orcus: Update to 0.13.4.
...
* gnu/packages/libreoffice.scm (orcus): Update to 0.13.4.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus
a3f2425e5d
gnu: ixion: Update to 0.13.0.
...
* gnu/packages/libreoffice.scm (ixion): Update to 0.13.0.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus
4e4dcd476e
gnu: Add libqxp.
...
* gnu/packages/libreoffice.scm (libqxp): New variable.
2018-06-07 11:09:54 +02:00
Ricardo Wurmus
38be0f4245
gnu: Add libepubgen.
...
* gnu/packages/libreoffice.scm (libepubgen): New variable.
2018-06-07 11:09:54 +02:00
Adam Zimmerman
d6dd64af37
gnu: opensmtpd: Fix crash on table authentication.
...
* gnu/packages/patches/opensmtpd-fix-crash.patch: New patch.
* gnu/packages/mail.scm (opensmtpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-06-07 03:57:42 +02:00
Tobias Geerinckx-Rice
6acc671bef
gnu: jbig2dec: Update source and home page URIs.
...
The old downloads.ghostscript.com returns a bogus 200 response, while
the new home page lists a different source.
Reported by Gábor Boskovits <boskovits@gmail.com>.
* gnu/packages/image.scm (jbig2dec)[source, home-page]: Update URIs.
2018-06-07 03:57:41 +02:00
Nicolas Goaziou
4a007e2db9
gnu: scribus: Fix build.
...
* gnu/packages/scribus.scm (scribus)[arguments]: Re-introduce fix for
"ImportError: No module named _sysconfigdata_nd".
2018-06-07 00:30:13 +02:00
Ricardo Wurmus
116ca65b58
Merge branch 'master' into core-updates
2018-06-06 22:43:37 +02:00
Nicolas Goaziou
25133ca172
gnu: colobot: Update to 0.1.11.1-alpha.
...
* gnu/packages/games.scm (colobot): Update to 0.1.11.1-alpha.
[native-inputs]: Update "colobot-data" and "colobot-music" to 0.1.11.1-alpha.
2018-06-06 19:16:21 +02:00
Nicolas Goaziou
89a651964a
gnu: scribus: Add "libzmf" dependency
...
* gnu/packages/scribus.scm (scribus)[inputs]: Add "libzmf".
2018-06-06 18:34:45 +02:00
Nicolas Goaziou
fec8d80cd1
gnu: scribus: Update to 1.5.4.
...
* gnu/packages/scribus.scm (scribus): Update to 1.5.4.
[source]: Remove patches.
[arguments]: Remove `patch-source' phase.
2018-06-06 18:33:38 +02:00
Rutger Helling
e6fcf903ec
gnu: vulkan-loader: Update URL and change name.
...
* gnu/packages/emulators.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/games.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/video.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/vulkan.scm (vulkan-loader): Rename from 'vulkan-icd-loader' to
'vulkan-loader'. Update URL and hash.
* gnu/packages/wine.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
2018-06-06 16:48:47 +02:00
Rutger Helling
7ea56cdec0
gnu: you-get: Update to 0.4.1077.
...
* gnu/packages/video.scm (you-get): Update to 0.4.1077.
2018-06-06 14:39:24 +02:00
Rutger Helling
c7a2f7b999
gnu: diffoscope: Update to 95.
...
* gnu/packages/package-management.scm (diffoscope): Update to 95.
2018-06-06 14:39:24 +02:00
Rutger Helling
89fc8aef8c
gnu: epiphany: Update to 3.28.2.1.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.28.2.1.
2018-06-06 14:39:24 +02:00
Rutger Helling
f9036105e6
gnu: gnome-disk-utility: Update to 3.28.3.
...
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.28.3.
2018-06-06 14:39:23 +02:00
Rutger Helling
9cf329aecc
gnu: gnome-terminal: Update to 3.28.2.
...
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.28.2.
2018-06-06 14:39:23 +02:00
Rutger Helling
6a29c8d344
gnu: gedit: Update to 3.28.1.
...
* gnu/packages/gnome.scm (gedit): Update to 3.28.1.
2018-06-06 14:39:23 +02:00
Ricardo Wurmus
e32db0fa0f
gnu: vigra: Disable broken test.
...
* gnu/packages/image.scm (vigra)[arguments]: Add phase "disable-broken-test";
enable parallel build.
2018-06-06 13:15:21 +02:00
Rutger Helling
c648781cec
gnu: lynx: Update to 2.8.9dev.19.
...
* gnu/packages/web-browsers.scm (lynx): Update to 2.8.9dev.19.
2018-06-06 12:46:40 +02:00
Efraim Flashner
73c0e477e5
gnu: esmtp: Replace 'bootstrap phase.
...
* gnu/packages/mail.scm (esmtp)[arguments]: Use custom 'autoconf phase
to replace default 'bootstrap phase.
2018-06-06 13:11:50 +03:00
Efraim Flashner
a34dfa249c
gnu: can-utils: Remove 'bootstrap phase.
...
* gnu/packages/networking.scm (can-utils)[arguments]: Remove unnecessary
'bootstrap phase.
2018-06-06 13:11:47 +03:00
Tobias Geerinckx-Rice
37b561e4ed
gnu: gerbv: Update to 2.6.2.
...
* gnu/packages/engineering.scm (gerbv): Update to 2.6.2.
[arguments]: Remove ‘autoconf’ phase...
[native-inputs]: ...and remove its dependencies.
2018-06-06 06:12:23 +02:00
Tobias Geerinckx-Rice
d193903e0c
gnu: linsmith: Update to 0.99.31.
...
* gnu/packages/engineering.scm (linsmith): Update to 0.99.31.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice
6e3d48c207
gnu: linsmith: Use HTTPS home page.
...
* gnu/packages/engineering.scm (linsmith)[home-page]: Use HTTPS.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice
3b295d3f4b
gnu: python-lmdb: Update to 0.94.
...
* gnu/packages/databases.scm (python-lmdb): Update to 0.94.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice
fcf29a7fbb
gnu: debootstrap: Update to 1.0.101.
...
* gnu/packages/debian.scm (debootstrap): Update to 1.0.101.
2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice
1a16b925f2
gnu: tomb: Update to 2.5.
...
* gnu/packages/crypto.scm (tomb): Update to 2.5.
[inputs, arguments]: Add util-linux for ‘findmnt’.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice
115af78e32
gnu: cfitsio: Update to 3.450.
...
* gnu/packages/astronomy.scm (cfitsio): Update to 3.450.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice
9566bb82e5
gnu: gnuastro: Update to 0.6.
...
* gnu/packages/astronomy.scm (gnuastro): Update to 0.6.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice
60b0c25222
gnu: wcslib: Fix build.
...
* gnu/packages/astronomy.scm (wcslib)[arguments]: Skip the default
‘install-license-files’ phase. Don't build or test in parallel.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice
4f12e5cc7c
gnu: inxi: Update to 3.0.11-1.
...
* gnu/packages/admin.scm (inxi): Update to 3.0.11-1.
2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice
b740a30527
gnu: inxi: Use GIT-FETCH.
...
* gnu/packages/admin.scm (inxi)[source]: Use GIT-FETCH.
[native-inputs]: Remove tar.
[arguments]: Adjust accordingly.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice
55f5556e24
gnu: inxi: Fix man page location.
...
* gnu/packages/admin.scm (inxi)[arguments]: Install man page to
/share/man instead of /share/doc/man.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice
bba082a1f8
gnu: ruby-asciidoctor: Use HTTPS home page.
...
* gnu/packages/ruby.scm (ruby-asciidoctor)[home-page]: Use HTTPS.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice
9933a8e739
gnu: ruby-asciidoctor: Update to 1.5.7.1.
...
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 1.5.7.1.
2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice
24a2622712
gnu: ruby-eventmachine: Use working home page.
...
* gnu/packages/ruby.scm (ruby-eventmachine)[home-page]: Update URI.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice
c207fa5e6c
gnu: ruby-eventmachine: Update to 1.2.7.
...
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.7.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice
58021db4d2
gnu: ruby-connection-pool: Update to 2.2.2.
...
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.2.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice
15dd85f0c3
gnu: linkchecker: Update to 9.4.0.
...
* gnu/packages/web.scm (linkchecker): Update to 9.4.0.
[source]: Use GIT-FETCH.
[inputs]: Add python2-dnspython and python2-pyxdg.
[arguments]: Remove ‘remove-python-requests-version’ phase.
[license]: Remove licences of unbundled inputs.
2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice
fe04975281
gnu: xf86-input-wacom: Update to 0.36.1.
...
* gnu/packages/xdisorg.scm (xf86-input-wacom): Update to 0.36.1.
[source]: Update URI.
2018-06-06 06:12:18 +02:00
Tobias Geerinckx-Rice
0ac68e7268
gnu: libwacom: Update to 0.30.
...
* gnu/packages/xdisorg.scm (libwacom): Update to 0.30.
[source]: Update URI.
2018-06-06 06:12:18 +02:00
Tobias Geerinckx-Rice
81dc1d1220
gnu: libwacom, xf86-input-wacom: Update home page.
...
‘The Linux Wacom Project has moved.’
-- <http://linuxwacom.sourceforge.net/wiki >
* gnu/packages/xdisorg.scm (libwacom, xf86-input-wacom)[home-page]:
Update URI.
2018-06-06 06:12:18 +02:00
Leo Famulari
d83c9fcb7b
gnu: darktable: Update to 2.4.4.
...
* gnu/packages/photo.scm (darktable): Update to 2.4.4.
2018-06-06 00:05:54 -04:00
Leo Famulari
f83eadd2ad
gnu: Update Syncthing to 0.14.48.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.48.
2018-06-05 20:35:52 -04:00
Leo Famulari
a624be49a2
gnu: go-github-com-chmduquesne-rollinghash-adler32: Update to 0.0.0-2.abb8cba.
...
* gnu/packages/syncthing.scm (go-github-com-chmduquesne-rollinghash-adler32):
Update to 0.0.0-2.abb8cba.
2018-06-05 20:35:49 -04:00
Ricardo Wurmus
ca8de35e90
Merge branch 'master' into core-updates
2018-06-05 23:44:11 +02:00
Ricardo Wurmus
42639cc980
gnu: qtractor: Update to 0.9.1.
...
* gnu/packages/music.scm (qtractor): Update to 0.9.1.
[arguments]: Add phase "fix-build-with-qt-5.11".
2018-06-05 23:43:12 +02:00
Mark H Weaver
db89d31876
gnu: linux-libre: Update to 4.17.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.16-arm.conf,
gnu/packages/aux-files/linux-libre/4.16-arm64.conf,
gnu/packages/aux-files/linux-libre/4.16-i686.conf,
gnu/packages/aux-files/linux-libre/4.16-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.17-arm.conf,
gnu/packages/aux-files/linux-libre/4.17-arm64.conf,
gnu/packages/aux-files/linux-libre/4.17-i686.conf,
gnu/packages/aux-files/linux-libre/4.17-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2018-06-05 17:21:03 -04:00
Mark H Weaver
704051b258
gnu: linux-libre@4.14: Update to 4.14.48.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.48.
(%linux-libre-4.14-hash): Update hash.
2018-06-05 17:20:57 -04:00
Mark H Weaver
4418c59005
gnu: linux-libre@4.9: Update to 4.9.106.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.106.
2018-06-05 17:20:53 -04:00
Ricardo Wurmus
b4a145fa71
gnu: yoshimi: Update to 1.5.8.
...
* gnu/packages/music.scm (yoshimi): Update to 1.5.8.
2018-06-05 23:18:10 +02:00
Efraim Flashner
396aab8e69
gnu: freedoom: Fix compilation.
...
* gnu/packages/games.scm (freedoom)[arguments]: Remove 'bootstrap phase.
2018-06-05 22:53:48 +03:00
Efraim Flashner
d88884fa3b
gnu: arc-theme: Replace bootstrap phase.
...
* gnu/packages/gmome.scm (arc-theme)[arguments]: Replace 'boostrap phase
with a custom phase.
2018-06-05 22:53:45 +03:00
Efraim Flashner
f1c6de3735
gnu: tilda: Replace bootstrap phase.
...
* gnu/packages/terminals.scm (tilda)[arguments]: Remove custom
'bootstrap phase and use it to replace default bootstrap phase.
2018-06-05 22:10:49 +03:00
Ricardo Wurmus
909301591d
gnu: Add sjcount.
...
* gnu/packages/bioinformatics.scm (sjcount): New variable.
2018-06-05 15:42:44 +02:00
Ricardo Wurmus
a64e30ed9e
gnu: Remove duplicate definition of r-heatmaply.
...
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05 13:59:54 +02:00
Ricardo Wurmus
d0f3427433
gnu: Remove duplicate definition of r-heatmaply.
...
* gnu/packages/cran.scm (r-heatmaply): Remove duplicate.
2018-06-05 13:59:15 +02:00
Ricardo Wurmus
1ee581973a
gnu: r-heatmaply: Add r-knitr.
...
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05 13:51:27 +02:00
Ricardo Wurmus
6da3aa3763
gnu: r-heatmaply: Add r-knitr.
...
* gnu/packages/cran.scm (r-heatmaply)[propagated-inputs]: Add r-knitr.
2018-06-05 13:50:29 +02:00
Ricardo Wurmus
e53152c72d
gnu: dropseq-tools: Remove failing phase.
...
* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Delete
"generate-jar-indices" phase.
2018-06-05 13:12:13 +02:00
Ricardo Wurmus
0c68f7fd9b
gnu: java-bouncycastle: Disable tests.
...
* gnu/packages/java.scm (java-bouncycastle)[arguments]: Disable tests.
2018-06-05 12:49:41 +02:00
Ricardo Wurmus
9cc66d75a2
gnu: pigx-scrnaseq: Use only one variant of Picard.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"java-picard" with "java-picard-2.10.3".
2018-06-05 11:26:34 +02:00
Ricardo Wurmus
1f94ba9408
gnu: java-picard: Delete failing build phase.
...
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
2018-06-05 11:26:08 +02:00
Ricardo Wurmus
1ed386fc26
gnu: java-cisd-jhdf5: Delete failing build phase.
...
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Delete build phase
"generate-jar-indices".
2018-06-05 11:17:03 +02:00
Ricardo Wurmus
a993ad833e
gnu: java-picard-1.113: Delete failing build phase.
...
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Delete
"generate-jar-indices" build phase.
2018-06-05 11:15:21 +02:00
Ricardo Wurmus
e847f402c1
gnu: java-picard-2.10.3: Delete failing build phase.
...
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
2018-06-05 11:14:38 +02:00
Ricardo Wurmus
d7e6fb6d7e
Merge branch 'master' into core-updates
2018-06-05 11:09:39 +02:00
Ricardo Wurmus
71c495c941
gnu: r-rtracklayer: Update to 1.40.3.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.3.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus
fb8c17baef
gnu: r-ranger: Update to 0.10.1.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.1.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus
c9a879ed54
gnu: r-np: Update to 0.60-8.
...
* gnu/packages/cran.scm (r-np): Update to 0.60-8.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus
83d5c2e106
gnu: t-series: Update to 0.10-45.
...
* gnu/packages/cran.scm (t-series): Update to 0.10-45.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus
c152c6b361
gnu: r-ksamples: Update to 1.2-8.
...
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-8.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus
d19e0690b9
gnu: r-methylkit: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.1.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus
0da6afa286
gnu: r-bamsignals: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.1.
2018-06-05 10:40:42 +02:00
Ricardo Wurmus
66ece08d05
Merge branch 'master' into core-updates
2018-06-05 09:59:27 +02:00
Tobias Geerinckx-Rice
4bf0a1f8d1
gnu: p11-kit: Update to 0.23.12.
...
* gnu/packages/tls.scm (p11-kit): Update to 0.23.12.
2018-06-05 03:19:48 +02:00
Mark H Weaver
8b71684a20
gnu: elfutils: Disable test suite on MIPS.
...
* gnu/packages/elf.scm (elfutils)[arguments]: Add (#:tests? #f) on MIPS.
2018-06-04 21:19:35 -04:00
Tobias Geerinckx-Rice
46fce96881
gnu: beets: Return #t from phases.
...
* gnu/packages/music.scm (beets)[arguments]: Substitute INVOKE for
SYSTEM* and return #t from all phases.
2018-06-05 03:19:26 +02:00
Tobias Geerinckx-Rice
123f86d898
gnu: nano: Update to 2.9.8.
...
* gnu/packages/nano.scm (nano): Update to 2.9.8.
2018-06-05 03:18:46 +02:00
Tobias Geerinckx-Rice
0d35a95417
gnu: python-pycurl: Update to 7.43.0.2.
...
* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.2.
2018-06-05 03:18:46 +02:00
Tobias Geerinckx-Rice
4682d48363
gnu: fvwm: Update to 2.6.8.
...
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.8.
2018-06-05 03:01:17 +02:00
Tobias Geerinckx-Rice
f7b53e6855
gnu: perl-parse-yapp: Update to 1.21.
...
* gnu/packages/perl.scm (perl-parse-yapp): Update to 1.21.
2018-06-05 03:01:17 +02:00
Tobias Geerinckx-Rice
b5dfccd7b6
gnu: perl-text-balanced: Update to 2.03.
...
* gnu/packages/perl.scm (perl-text-balanced): Update to 2.03.
[source]: Update URI.
2018-06-05 03:01:16 +02:00
Tobias Geerinckx-Rice
971b8381ff
gnu: perl-posix-strftime-compiler: Update to 0.42.
...
* gnu/packages/perl.scm (perl-posix-strftime-compiler): Update to
0.42.
2018-06-05 03:01:07 +02:00
Tobias Geerinckx-Rice
27f89be5c9
gnu: perl-moosex-methodattributes: Update to 0.31.
...
* gnu/packages/perl.scm (perl-moosex-methodattributes): Update to
0.31.
2018-06-05 03:00:58 +02:00
Tobias Geerinckx-Rice
91cb6eaf52
gnu: perl-module-install: Update to 1.19.
...
* gnu/packages/perl.scm (perl-module-install): Update to 1.19.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
Tobias Geerinckx-Rice
ed2e354b79
gnu: perl-memoize-expirelru: Update to 0.56.
...
* gnu/packages/perl.scm (perl-memoize-expirelru): Update to 0.56.
[source]: Update URI.
2018-06-05 01:31:32 +02:00
Tobias Geerinckx-Rice
01c6607af9
gnu: ccid, pcsc-lite: Move away from alioth.debian.org.
...
* gnu/packages/security-token.scm (ccid, pcsc-lite)[source, home-page]:
Update upstream URI.
2018-06-04 18:27:59 +02:00
Rutger Helling
19b662ea7c
gnu: ranger: Enable image support.
...
* gnu/packages/disk.scm (ranger)[inputs]: Add 'w3m'.
[arguments]: Add wrapper for W3MIMGDISPLAY_PATH environment variable.
2018-06-04 16:35:03 +02:00
Tobias Geerinckx-Rice
fd17434249
gnu: lz4: Use HTTPS home page.
...
* gnu/packages/compression.scm (lz4)[home-page]: Use HTTPS.
2018-06-04 15:35:48 +02:00
Tobias Geerinckx-Rice
b6315bc0d2
gnu: thermald: Update to 1.7.2.
...
* gnu/packages/admin.scm (thermald): Update to 1.7.2.
[arguments]: Remove Upstart kluge as promised.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
49d85a19fb
gnu: pdfgrep: Update to 2.1.1.
...
* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.1.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
e1345dec67
gnu: lxqt-build-tools: Update to 0.5.0.
...
* gnu/packages/lxqt.scm (lxqt-build-tools): Update to 0.5.0.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
12eadf5649
gnu: perl-libintl-perl: Update to 1.29.
...
* gnu/packages/perl.scm (perl-libintl-perl): Update to 1.29.
2018-06-04 15:35:47 +02:00
Tobias Geerinckx-Rice
a0b9612fc9
gnu: perl-hash-multivalue: Update to 0.16.
...
* gnu/packages/perl.scm (perl-hash-multivalue): Update to 0.16.
[source]: Update URI.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice
92299d669a
gnu: perl-file-pushd: Update to 1.016.
...
* gnu/packages/perl.scm (perl-file-pushd): Update to 1.016.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice
cf25329661
gnu: perl-exception-class: Update to 1.44.
...
* gnu/packages/perl.scm (perl-exception-class): Update to 1.44.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice
4f6c01e78a
gnu: perl-datetime-timezone: Update to 2.19.
...
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.19.
2018-06-04 15:35:46 +02:00
Tobias Geerinckx-Rice
a1b16662bc
gnu: perl-test-without-module: Update to 0.20.
...
* gnu/packages/perl-check.scm (perl-test-without-module): Update to 0.20.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice
e40ab7382e
gnu: perl-datetime: Update to 1.49.
...
* gnu/packages/perl.scm (perl-datetime): Update to 1.49.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice
854cf20647
gnu: perl-context-preserve: Update to 0.03.
...
* gnu/packages/perl.scm (perl-context-preserve): Update to 0.03.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice
30c070d1ae
gnu: perl-class-load-xs: Update to 0.10.
...
* gnu/packages/perl.scm (perl-class-load-xs): Update to 0.10.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
Add perl-test-without-module.
2018-06-04 15:35:45 +02:00
Tobias Geerinckx-Rice
d2fe431870
gnu: perl-class-load: Update to 0.24.
...
* gnu/packages/perl.scm (perl-class-load): Update to 0.24.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
Add perl-test-without-module.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice
d017dfaaf3
gnu: sent: Say ‘plain text’.
...
‘Plaintext’ is a crypto term. ‘Slideshow’ is apparently acceptable.
* gnu/packages/suckless.scm (sent)[synopsis, description]: Add spaces.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice
4ae9274ae9
gnu: snd: Version documentation directory.
...
* gnu/packages/audio.scm (snd)[arguments]: Install documentation to the
conventional location. Remove redundant MKDIR-P. Align cosmetically.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice
84979374c2
gnu: acpica: Update to 20180531.
...
* gnu/packages/admin.scm (acpica): Update to 20180531.
2018-06-04 15:35:44 +02:00
Tobias Geerinckx-Rice
a052d5ab0d
gnu: isync: Add SASL support.
...
This adds ~5.5 MiB (7.5%) to isync's now-78.6 MiB closure.
* gnu/packages/mail.scm (isync)[inputs]: Add CYRUS-SASL.
2018-06-04 15:35:43 +02:00
Ludovic Courtès
7394e264fc
gnu: perf: Work around GCC bug.
...
Works around <https://bugs.gnu.org/31708 >.
* gnu/packages/patches/perf-gcc-ice.patch: New patch.
* gnu/packages/linux.scm (perf)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-06-04 14:03:54 +02:00
Ludovic Courtès
831f07a009
gnu: signing-party: Update to commit d6f2296.
...
* gnu/packages/gnupg.scm (signing-party): Update to commit d6f2296.
[home-page]: Change to salsa.debian.org.
[source]: Use git-fetch.
[arguments]: Remove 'change-directory' phase. In 'configure' phase,
modify 'gpgwrap/Makefile' instead of 'gpgwrap/src/Makefile'.
2018-06-04 14:03:54 +02:00
Ricardo Wurmus
32da38d572
Merge branch 'master' into core-updates
2018-06-04 11:25:48 +02:00
Efraim Flashner
c0e7a52996
gnu: python-pyqt: Update to 5.10.1.
...
* gnu/packages/qt.scm (python-pyqt): Update to 5.10.1.
[inputs]: Remove qtwebkit.
[arguments]: Add custom phase to fix compilation with Qt 5.11.
2018-06-04 11:06:00 +03:00
Efraim Flashner
9cdd868450
gnu: python-sip: Update to 4.19.8.
...
* gnu/packages/qt.scm (python-sip): Update to 4.19.8.
2018-06-04 11:05:57 +03:00
Efraim Flashner
d53e5b366d
gnu: gcompris-qt: Update to 0.91.
...
* gnu/packages/education.scm (gcompris-qt): Update to 0.91.
[arguments]: Add custom phase to fix building with Qt 5.11.
2018-06-03 19:11:27 +03:00
Efraim Flashner
68ddfb2e8d
gnu: quassel: Fix building with Qt 5.11.
...
* gnu/packages/irc.scm (quassel)[sources]: Add patch. Return #t from
snippet.
* gnu/packages/patches/quassel-qt-5.11.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-06-03 15:49:50 +03:00
Rutger Helling
4edc431b0f
gnu: w3m: Enable image support.
...
* gnu/packages/w3m.scm (w3m)[inputs]: Add gdk-pixbuf, libx11.
2018-06-03 13:01:41 +02:00
Efraim Flashner
6f5c67d725
gnu: keepassxc: Fix compilation with Qt 5.11.
...
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add custom
'patch-sources phase to include missing headers.
2018-06-03 12:46:11 +03:00
Mark H Weaver
0c0431f9ce
Merge branch 'master' into core-updates
2018-06-03 03:36:47 -04:00
Mark H Weaver
2c790226d2
gnu: rust: Fix build for armhf and mips64el.
...
This is a followup to commit 514026d7de
.
* gnu/packages/rust.scm (nix-system->gnu-triplet-for-rust): New variable.
(rust-bootstrap, mrustc, rust-1.23): Use 'nix-system->gnu-triplet-for-rust'
instead of 'nix-system->gnu-triplet'.
2018-06-03 03:36:13 -04:00
Efraim Flashner
0ec430f795
gnu: xxd: Remove all inherited inputs.
...
* gnu/packages/vim.scm (xxd)[inputs]: New field, don't inherit from vim.
2018-06-02 23:34:56 +03:00
Efraim Flashner
aa75dadab8
gnu: vim: Update to 8.1.0026.
...
* gnu/packages/vim.scm (vim): Update to 8.1.0026.
[arguments]: Update substitute list on custom 'patch-config-files phase.
[inputs]: Remove inetutils.
2018-06-02 23:34:37 +03:00
Efraim Flashner
2d4fdb707e
gnu: xxd: Return true from all phases.
...
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir
phase.
2018-06-02 22:34:23 +03:00
Pierre Neidhardt
15dcd292df
gnu: Add emacs-fish-completion.
...
* gnu/packages/emacs.scm (emacs-fish-completion): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:52 +02:00
Pierre Neidhardt
e374010923
gnu: Add emacs-evil-org.
...
* gnu/packages/emacs.scm (emacs-evil-org): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
ac85107c9f
gnu: Add emacs-evil-multiedit.
...
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
e1e09bcb43
gnu: Add emacs-evil-mu4e.
...
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
c6c1f0bf41
gnu: Add emacs-evil-magit.
...
* gnu/packages/emacs.scm (emacs-evil-magit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Pierre Neidhardt
22deb03439
gnu: Add emacs-evil-ediff.
...
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-02 16:02:51 +02:00
Ludovic Courtès
f52ef55e2b
gnu: guile-json: Update to 1.0.1.
...
* gnu/packages/guile.scm (guile-json): Update to 1.0.1.
[source]: Switch to github.com. Adjust 'snippet' to modify
'configure.ac' and 'Makefile.am'.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
2018-06-02 15:29:38 +02:00
Ricardo Wurmus
e0f8970357
Merge branch 'master' into core-updates
2018-06-02 13:44:43 +02:00
Ricardo Wurmus
92963798a6
gnu: r-scater: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.
2018-06-02 13:42:05 +02:00
Ricardo Wurmus
83402242ea
gnu: r-mvtnorm: Update to 1.0-8.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus
7799a01ef1
gnu: r-rgraphviz: Update to 2.24.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus
d7e3299987
gnu: r-scran: Update to 1.8.2.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
2018-06-02 13:39:13 +02:00
Ricardo Wurmus
8ec56b2956
gnu: r-delayedmatrixstats: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
d99e0938fa
gnu: r-singlecellexperiment: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
fd613234b7
gnu: r-beachmat: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
e9c417361e
gnu: r-rhdf5lib: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
0840352835
gnu: r-hdf5array: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
5cd725d002
gnu: r-qvalue: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
c6c619c179
gnu: r-hitc: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
4dedecbe70
gnu: r-fithic: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
8db6256f4b
gnu: r-sushi: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
2d3c172b72
gnu: r-gwascat: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
fecbbac286
gnu: r-gviz: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
6929b97583
gnu: r-gqtlstats: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
45c29a6e5c
gnu: r-ldblock: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
9b0b108ed9
gnu: r-erma: Update to 0.12.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
d26f95d079
gnu: r-snpstats: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
dcd1f0236c
gnu: r-gqtlbase: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
2018-06-02 13:39:12 +02:00
Ricardo Wurmus
e214a6e6ff
gnu: r-ggbio: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
34cc18d4de
gnu: r-biovizbase: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
94ae875c0a
gnu: r-organismdbi: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
bbcd19fb4d
gnu: r-ensembldb: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
19adb89854
gnu: r-dirichletmultinomial: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
d3fb2ad834
gnu: r-complexheatmap: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
d1463f1b0c
gnu: r-genomicfiles: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
1ba126e0e4
gnu: r-gage: Update to 2.30.0.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
419e438d52
gnu: r-keggrest: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
15cc1a6867
gnu: r-fastseg: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
646439c7e3
gnu: r-annotationhub: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
420415b057
gnu: r-interactivedisplaybase: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
a67dd4c5e9
gnu: r-edaseq: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
749b712677
gnu: r-deseq: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
0ebd7a4c9f
gnu: r-aroma-light: Update to 3.10.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus
bdc8b40af2
gnu: r-msnid: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
250d78eac9
gnu: r-msnbase: Update to 2.6.1.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1.
[propagated-inputs]: Add r-mass and r-scales.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
0f773b90db
gnu: r-pcamethods: Update to 1.72.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.72.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
7bd2582971
gnu: r-mzid: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.18.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
af8710624d
gnu: r-vsn: Update to 3.48.1.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.48.1.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
5837f1835b
gnu: r-affy: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.58.0.
[inputs]: Add zlib.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
82589f7430
gnu: r-affyio: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.50.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
39cc491790
gnu: r-mzr: Update to 2.14.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.14.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
a02b82088f
gnu: r-protgenerics: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.12.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
9547dd8613
gnu: r-sva: Update to 3.28.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.28.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
19ad568e79
gnu: r-methylkit: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
aae4f716da
gnu: r-copywriter: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.12.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
8f94487da7
gnu: r-chipseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.30.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
62509bbc81
gnu: r-annotationfilter: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.4.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
d73c5728f3
gnu: r-rhdf5: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
c76e8baf9e
gnu: r-tximport: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
b6c2c8f781
gnu: r-mutationalpatterns: Update to 1.6.1.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
72f11ff9c5
gnu: r-bamsignals: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
1a08bb8a17
gnu: r-rhtslib: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
2c480bb012
gnu: r-zlibbioc: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
7e6537e257
gnu: r-motifrg: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
8217c2d0bc
gnu: r-seqlogo: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
17d35de73f
gnu: r-genomation: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
5229cedf57
gnu: r-seqpattern: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
25d1df5764
gnu: r-impute: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.54.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
89ef133ebd
gnu: r-bsgenome: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.48.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
f2eb2e453e
gnu: r-topgo: Update to 2.32.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.32.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
2f66fecd89
gnu: r-graph: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.58.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
b4ad4ec6b4
gnu: r-genomicfeatures: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.0.
[propagated-inputs]: Remove r-rmysql.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
a30df29768
gnu: r-rtracklayer: Update to 1.40.2.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.2.
[native-inputs]: Add pkg-config.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
90102bd06b
gnu: r-genomicalignments: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
9bf4110ea1
gnu: r-summarizedexperiment: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
82f593f378
gnu: r-delayedarray: Update to 0.6.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
d2367a89dd
gnu: r-rsamtools: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
942655add1
gnu: r-biostrings: Update to 2.48.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
e6eac58d4c
gnu: r-biocparallel: Update to 1.14.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
1763cba80e
gnu: r-biomart: Update to 2.36.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
77f66feee7
gnu: r-annotationdbi: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
6fd71f1b6a
gnu: r-biobase: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
e51afc63b7
gnu: r-genomicranges: Update to 1.32.3.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
c2401d06c5
gnu: r-xvector: Update to 0.20.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
0a465e5694
gnu: r-limma: Update to 3.36.1.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
d358a5a0c1
gnu: r-variantannotation: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
4639025284
gnu: r-edger: Update to 3.22.2.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
953c8b18f8
gnu: r-genomeinfodb: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
8b44c28f5d
gnu: r-iranges: Update to 2.14.10.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
33cd15fa84
gnu: r-s4vectors: Update to 0.18.2.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
607acf3194
gnu: r-dnacopy: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
3679a2fec4
gnu: r-bioccheck: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
dc6c168ac1
gnu: r-biocstyle: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
e5f52b692a
gnu: r-biocviews: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
97af51ef40
gnu: r-biocinstaller: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
e5907a44e1
gnu: r-biocgenerics: Update to 0.26.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
9370b8ee9f
gnu: r-grohmm: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
712fe39680
gnu: r-systempiper: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
eabe78faca
gnu: r-shortread: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
9da8e275ca
gnu: r-gostats: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
d8410d6610
gnu: r-category: Update to 2.46.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
f1094f50a7
gnu: r-gseabase: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
9177ac2295
gnu: r-rbgl: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
5516db9e70
gnu: r-annotationforge: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
16da69b5e6
gnu: r-dexseq: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
51c1f96ebc
gnu: r-deseq2: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
41657b15f4
gnu: r-genefilter: Update to 1.62.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
4d70c8c486
gnu: r-geneplotter: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
14e9235f0c
gnu: r-copynumber: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
02be818044
gnu: r-annotate: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
81b0181b6f
gnu: r-qdnaseq: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
5c0df206cf
gnu: r-cghcall: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
205df4a4cb
gnu: r-cghbase: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
6748708883
gnu: r-marray: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0.
[propagated-inputs]: Remove r-biobase.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
f794e85daa
gnu: r-chippeakanno: Update to 3.14.0.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0.
[propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges,
r-iranges, and r-s4vectors.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
43734b4727
gnu: r-ripseeker: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
45bbccf4e7
gnu: r-diffbind: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
72427c721d
gnu: r-regioner: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
2f5b3d8e90
gnu: r-hpar: Update to 1.22.2.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus
d22546cf80
gnu: r-minimal: Update to 3.5.0.
...
* gnu/packages/statistics.scm (r-with-tests): New variable derived from
r-minimal; update to 3.5.0.
[arguments]: Build recommended packages.
(r-minimal): Inherit from r-with-tests.
[arguments]: Disable recommended packages and tests.
2018-06-02 13:39:06 +02:00
Clément Lassieur
d5452aa201
gnu: emacs-elfeed: Update to 3.0.0.
...
* gnu/packages/emacs.scm (emacs-elfeed): Update to 3.0.0.
2018-06-02 13:05:08 +02:00
Ludovic Courtès
a13c1bf4ca
Merge branch 'master' into core-updates
2018-06-01 23:41:40 +02:00
Mark H Weaver
1a3e3162ac
gnu: icecat: Add more fixes from upstream esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-06-01 12:51:43 -04:00
Ricardo Wurmus
65a9f6b6cf
gnu: qtbase: Fix build on older kernels.
...
* gnu/packages/qt.scm (qtbase)[arguments]: Add configure flags
"-no-feature-getentropy" and "-no-feature-renameat2".
2018-06-01 17:33:25 +02:00
Robin Templeton
514026d7de
gnu: rust: Add support for building 32-bit packages on 64-bit hosts.
...
* gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use
nix-system->gnu-triplet to determine the system type.
(rust-1.19): Use readelf instead of nm in the atomic-lock-free test.
(rust-1.23): Disable the cargo_test_env test. Disable parallel execution of
tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample
a078a6ec3b
gnu: Add git-annex.
...
* gnu/packages/version-control.scm (git-annex): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample
4e5d9bf20e
gnu: Add ghc-disk-free-space.
...
* gnu/packages/haskell.scm (ghc-disk-free-space): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample
1ea3971992
gnu: ghc-psqueues: Allow building with newer versions of QuickCheck.
...
* gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure
flag to allow newer versions of QuickCheck.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample
6950a45073
gnu: Add ghc-safesemaphore.
...
* gnu/packages/haskell.scm (ghc-safesemaphore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample
92c2097bc2
gnu: Add ghc-esqueleto.
...
* gnu/packages/haskell.scm (ghc-esqueleto): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample
a39e6faee9
gnu: Add ghc-ifelse.
...
* gnu/packages/haskell.scm (ghc-ifelse): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample
e3aae496f9
gnu: Add ghc-feed.
...
* gnu/packages/haskell.scm (ghc-feed): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample
4c798726b4
gnu: Add ghc-bloomfilter.
...
* gnu/package/haskell.scm (ghc-bloomfilter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Rouby Pierre-Antoine
d6a4dfec90
gnu: Add hpcguix-web.
...
* gnu/package/web.scm (hpcguix-web): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-06-01 13:50:26 +02:00
Ludovic Courtès
5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26.
...
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase. In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable. Remove substitution for
'w3m-image-viewer', which no longer exists.
2018-06-01 13:50:26 +02:00
Stefan Stefanović
8674abb1dd
gnu: sddm: Fix CMake build.
...
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.
Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-06-01 12:17:00 +02:00
Leo Famulari
e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].
...
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
2018-05-31 20:31:46 -04:00
Konrad Hinsen
555ab0853b
gnu: Add emacs-zotxt.
...
* gnu/packages/emacs.scm (emacs-zotxt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:09 +02:00
Konrad Hinsen
45dca193a4
gnu: Add emacs-org-caldav.
...
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Konrad Hinsen
ec8a9892d1
gnu: Add python-bigfloat.
...
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Fis Trivial
73d854232f
gnu: bear: Fix python path.
...
* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Ricardo Wurmus
59f87b44da
Merge branch 'master' into core-updates
2018-05-31 13:23:49 +02:00
Ricardo Wurmus
404e5c7d7d
gnu: r-servr: Update to 0.10.
...
* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
508dd24abe
gnu: r-shiny: Update to 1.1.0.
...
* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
eb0d599a67
gnu: r-rjson: Update to 0.2.19.
...
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
71644c0ee8
gnu: r-htmltable: Update to 1.12.
...
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
beb0878fe5
gnu: r-directlabels: Update to 2018.05.22.
...
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
089e037638
gnu: r-ranger: Update to 0.10.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
14bb6f5f83
gnu: r-tclust: Update to 1.4-1.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
9fad62743c
gnu: r-caret: Update to 6.0-80.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
9bcc68fbf6
gnu: r-quantreg: Update to 5.36.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
13dc492435
gnu: r-rrcov: Update to 1.4-4.
...
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
366dd8d7cb
gnu: r-runit: Update to 0.4.32.
...
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
edb29f2986
gnu: r-purrr: Update to 0.2.5.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
e94d827440
gnu: r-tidyr: Update to 0.8.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
1957c20e0c
gnu: r-synchronicity: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
7da0790e2a
gnu: r-rngtools: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
3a6051659d
gnu: r-pkgmaker: Update to 0.27.
...
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
a52bb97a79
gnu: r-plotrix: Update to 3.7-2.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
1ce6be5ee2
gnu: r-data-table: Update to 1.11.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
2d7758c1d6
gnu: r-rlang: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
624283a107
gnu: r-knitrbootstrap: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10.
...
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
99b225f3eb
gnu: r-bit: Update to 1.1-14.
...
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
3c441be0f3
gnu: r-kernlab: Update to 0.9-26.
...
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
ad016826c9
gnu: r-rmysql: Update to 0.10.15.
...
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
aea3be250c
gnu: r-mice: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
6034a62a1b
gnu: r-callr: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
e86d3cc501
gnu: r-shinyace: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
a80606308a
gnu: r-processx: Update to 3.1.0.
...
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
9944399ae3
gnu: r-ggally: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
13079c143b
gnu: r-psych: Update to 1.8.4.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
aadb9ee6df
gnu: r-pillar: Update to 1.2.3.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
65ea783f6c
gnu: r-utf8: Update to 1.1.4.
...
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
c36745cf95
gnu: r-ggjoy: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
cda93e8399
gnu: r-dtw: Update to 1.20-1.
...
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
fabf09934b
gnu: r-ica: Update to 1.0-2.
...
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
1e31e8bc74
gnu: r-sm: Update to 2.2-5.5.
...
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1.
...
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
0759d87dfc
gnu: r-ggrepel: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
b13b56743b
gnu: r-cvst: Update to 0.2-2.
...
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
975ea10d6f
gnu: r-energy: Update to 1.7-4.
...
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
90f1ecb939
gnu: r-emdbook: Update to 1.3.10.
...
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
0acbf8bbb7
gnu: r-inline: Update to 0.3.15.
...
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
207c497e14
gnu: r-ff: Update to 2.2-14.
...
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
c81497b141
gnu: r-rcpp: Update to 0.12.17.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
5479e3e639
gnu: r-abbyyr: Update to 0.5.4.
...
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
11de8673d1
gnu: Add r-bibtex.
...
* gnu/packages/cran.scm (r-bibtex): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
9f56ceecf3
gnu: Add r-reticulate.
...
* gnu/packages/cran.scm (r-reticulate): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
d182828f53
gnu: Add r-zip.
...
* gnu/packages/cran.scm (r-zip): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
84e7147ae3
gnu: Add r-mitml.
...
* gnu/packages/cran.scm (r-mitml): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
03e718fbb1
gnu: Add r-pan.
...
* gnu/packages/cran.scm (r-pan): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
fe1495e35c
gnu: Add r-jomo.
...
* gnu/packages/cran.scm (r-jomo): New variable.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus
3ca317359c
gnu: r-vegan: Update to 2.5-2.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
2018-05-31 13:21:31 +02:00
Mark H Weaver
966e9575a3
gnu: linux-libre@4.14: Update to 4.14.47.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.47.
(%linux-libre-4.14-hash): Update hash.
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.14): Remove patch.
2018-05-31 04:17:22 -04:00
Mark H Weaver
55b68174aa
gnu: linux-libre@4.9: Update to 4.9.105.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.105.
Remove patch.
2018-05-31 04:16:05 -04:00
Mark H Weaver
2aab213e36
gnu: linux-libre@4.4: Update to 4.4.135.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.135.
Remove patch.
2018-05-31 04:14:57 -04:00
Ricardo Wurmus
1e341fa508
gnu: powertabeditor: Fix build with Qt 5.11.
...
Fixes <https://bugs.gnu.org/31659 >.
* gnu/packages/music.scm (powertabeditor)[arguments]: Add build phase
"add-missing-headers".
2018-05-31 08:30:45 +02:00
Efraim Flashner
d2dde99e99
gnu: mariadb: Update to 10.1.33.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-31 08:45:58 +03:00
Mark H Weaver
0d6f84aab1
Merge branch 'master' into core-updates
2018-05-31 00:27:03 -04:00
Mark H Weaver
88a3465e4a
gnu: linux-libre: Revert bad upstream patch in 4.14/4.9/4.4 kernels.
...
Apply the 1-line revert from upstream that was the sole fix in 4.14.47,
4.9.105, and 4.4.135. Here we cherry-pick the patch until the corresponding
linux-libre versions are released.
* gnu/packages/linux.scm (linux-libre-4.14, linux-libre-4.9)
(linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14)
(linux-libre-4.4): Add the patch.
2018-05-31 00:23:41 -04:00
Jonathan Brielmaier
706d6190ca
gnu: 0ad: Update to 0.0.23-alpha.
...
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23-alpha.
[source]: Use HTTPS URL.
[inputs]: Add libsodium.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-31 00:21:47 -04:00
Tobias Geerinckx-Rice
e9ae846667
gnu: knot: Update to 2.6.7.
...
* gnu/packages/dns.scm (knot): Update to 2.6.7.
2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice
51c4fb007a
gnu: duperemove: Update to 0.11.
...
* gnu/packages/disk.scm (duperemove): Update to 0.11.
2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice
42d93a32ee
gnu: sakura: Update to 3.6.0.
...
* gnu/packages/terminals.scm (sakura): Update to 3.6.0.
2018-05-31 04:54:58 +02:00
Tobias Geerinckx-Rice
4ef1d9fd8b
gnu: stunnel: Update to 5.46.
...
* gnu/packages/web.scm (stunnel): Update to 5.46.
2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice
6c4d1413f2
gnu: mkvtoolnix: Use INVOKE.
...
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice
8d5960d1b1
gnu: liba52: Use INVOKE.
...
* gnu/packages/video.scm (liba52)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:57 +02:00
Tobias Geerinckx-Rice
3103101ec9
gnu: aalib: Use INVOKE.
...
* gnu/packages/video.scm (aalib)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice
d840f6b98a
gnu: xapian: Use INVOKE.
...
* gnu/packages/search.scm (xapian)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice
6c738fe9e7
gnu: khal: Use INVOKE.
...
* gnu/packages/calendar.scm (khal)[arguments]: Substitute INVOKE for
SYSTEM* and explicitly return #t from phases where needed.
2018-05-31 04:54:56 +02:00
Tobias Geerinckx-Rice
4133914416
gnu: rss-bridge: Use INVOKE.
...
* gnu/packages/web.scm (rss-bridge)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
Tobias Geerinckx-Rice
a145d7e9af
gnu: python-clf: Use INVOKE.
...
* gnu/packages/web.scm (python-clf)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:55 +02:00
Tobias Geerinckx-Rice
b8150fa091
gnu: python-internetarchive: Use INVOKE.
...
* gnu/packages/web.scm (python-internetarchive)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-05-31 04:54:54 +02:00
Tobias Geerinckx-Rice
16b5dafc4d
gnu: httptunnel: Use INVOKE.
...
* gnu/packages/web.scm (httptunnel)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:54 +02:00
Tobias Geerinckx-Rice
2cdc719193
gnu: surfraw: Use INVOKE.
...
* gnu/packages/web.scm (surfraw)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice
9cd760f13f
gnu: gumbo-parser: Use INVOKE.
...
* gnu/packages/web.scm (gumbo-parser)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice
7f4e5f19fa
gnu: sassc: Use INVOKE.
...
* gnu/packages/web.scm (sassc)[arguments]: Substitute INVOKE for SYSTEM*
and its plumbing.
2018-05-31 04:54:53 +02:00
Tobias Geerinckx-Rice
b5d587055b
gnu: tidy: Use INVOKE.
...
* gnu/packages/web.scm (tidy)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31 04:54:52 +02:00
Tobias Geerinckx-Rice
946e5e8aa1
gnu: tipp10: Use INVOKE.
...
* gnu/packages/education.scm (tipp10)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:52 +02:00
Tobias Geerinckx-Rice
aa0771556e
gnu: krona-tools: Use INVOKE.
...
* gnu/packages/web.scm (krona-tools)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
Tobias Geerinckx-Rice
359375e649
gnu: fcgiwrap: Use INVOKE.
...
* gnu/packages/web.scm (fcgiwrap)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:51 +02:00
Tobias Geerinckx-Rice
e80c05ac3e
gnu: ffmpeg: Use INVOKE.
...
* gnu/packages/video.scm (ffmpeg)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice
512f22f9e8
gnu: r-dplyr: Update to 0.7.5.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.5.
[propagated-inputs]: Add r-tidyselect.
2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice
fc55fe2ef7
gnu: s6-rc: Update to 0.4.0.1.
...
* gnu/packages/skarnet.scm (s6-rc): Update to 0.4.0.1.
2018-05-31 04:54:50 +02:00
Tobias Geerinckx-Rice
1608969b03
gnu: skalibs: Update to 2.6.4.0.
...
* gnu/packages/skarnet.scm (skalibs): Update to 2.6.4.0.
2018-05-31 04:54:49 +02:00
Tobias Geerinckx-Rice
2c65c085f9
gnu: lchat: Mark up description.
...
* gnu/packages/suckless.scm (lchat)[description]: Use @code.
2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice
82f22fac9f
gnu: lchat: Update to 0.0.0-3.f951919.
...
* gnu/packages/suckless.scm (lchat): Update to 0.0.0-3.f951919.
[arguments]: Run tests. Install man page.
2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice
aa945bf637
gnu: human: Update to 0.3.
...
* gnu/packages/suckless.scm (human): Update to 0.3.
[source]: Use version as the tag, and GIT-FILE-NAME.
2018-05-31 04:54:48 +02:00
Tobias Geerinckx-Rice
8f7c6a5ff7
gnu: sent: Update to 1.
...
* gnu/packages/suckless.scm (sent): Update to 1.
[source]: Switch to URL-FETCH/TARBALL.
2018-05-31 04:54:47 +02:00
Tobias Geerinckx-Rice
fc1a7b58d7
gnu: st: Update to 0.8.1.
...
* gnu/packages/suckless.scm (st): Update to 0.8.1.
[arguments]: Relax ‘inhibit-terminfo-install’ regular expression.
2018-05-31 04:54:47 +02:00
Tobias Geerinckx-Rice
504d16dd04
gnu: spoon: Update to 0.6.
...
* gnu/packages/suckless.scm (spoon): Update to 0.6.
2018-05-31 04:54:46 +02:00
Tobias Geerinckx-Rice
a66fb3a14e
gnu: isync: Add zlib compression support.
...
This adds ~400 KiB (.5%) to isync's now-73.1 MiB closure.
* gnu/packages/mail.scm (isync)[inputs]: Add ZLIB.
2018-05-30 23:46:53 +02:00
Efraim Flashner
03d9031962
gnu: mariadb: Update to 10.1.33.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-30 22:46:31 +03:00
Mark H Weaver
370e87fdbb
gnu: linux-libre: Update to 4.16.13.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.13.
(%linux-libre-hash): Update hash.
2018-05-30 14:59:47 -04:00
Mark H Weaver
49e67982eb
gnu: linux-libre@4.14: Update to 4.14.46.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.46.
(%linux-libre-4.14-hash): Update hash.
2018-05-30 14:58:49 -04:00
Mark H Weaver
f9e1c2d72a
gnu: linux-libre@4.9: Update to 4.9.104.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.104.
2018-05-30 14:58:09 -04:00
Mark H Weaver
13fcbf3cce
gnu: linux-libre@4.4: Update to 4.4.134.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.134.
2018-05-30 14:57:22 -04:00
Clément Lassieur
6f8f98df7f
gnu: scribus: Fix build against Qt 5.11.
...
* gnu/packages/scribus.scm (scribus)[arguments]: Add a 'patch-source' phase
that includes missing headers.
2018-05-30 20:45:17 +02:00
Ludovic Courtès
9ab0627eee
gnu: glibc-locales: Adjust patch that no longer applied.
...
* gnu/packages/patches/glibc-locales.patch: Adjust for glibc 2.27.
2018-05-30 15:21:27 +02:00
Ricardo Wurmus
80c0f69c50
gnu: emms: Fix build.
...
* gnu/packages/emacs.scm (emms)[arguments]: Reset time stamps of files to be
gzipped; let post-install phase return #t.
2018-05-30 14:54:53 +02:00
Ricardo Wurmus
bc73f673e8
gnu: icedtea-7: Build with gcc-4.9.
...
* gnu/packages/java.scm (icedtea-7)[native-inputs]: Add gcc-4.9.
2018-05-30 12:29:14 +02:00
Ricardo Wurmus
bcb078a4dc
gnu: icedtea-6: Build with gcc-4.9.
...
* gnu/packages/java.scm (icedtea-6)[native-inputs]: Add gcc-4.9 and libnsl.
2018-05-30 11:06:21 +02:00
Mark H Weaver
d0e23e3940
gnu: vlc: Update to 3.0.3, and add more inputs.
...
Co-authored-by: Roel Janssen <roel@gnu.org>
* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg. Replace lua-5.1 with
lua-5.2. Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags. In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt". Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'. Add new
'wrap-executable' phase.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2018-05-30 11:02:57 +02:00
Clément Lassieur
cfcd9a4551
gnu: wireshark: End phase with #t.
...
* gnu/packages/networking.scm (wireshark)[arguments]: End 'patch-source' phase
with #t.
2018-05-30 11:02:52 +02:00
Tobias Geerinckx-Rice
3fe0d36027
gnu: perl-text-format: Update to 0.61.
...
* gnu/packages/perl.scm (perl-text-format): Update to 0.61.
2018-05-30 10:06:57 +02:00
Tobias Geerinckx-Rice
2847d833be
gnu: python-oslo.utils: Update to 3.36.2.
...
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.2.
2018-05-30 10:06:57 +02:00
Ricardo Wurmus
14e2f61ada
gnu: gtkglext: Fix build.
...
* gnu/packages/gnome.scm (gtkglext)[arguments]: Add build phase to fix name
collision.
2018-05-30 08:57:33 +02:00
Mark H Weaver
341a36b32c
Merge branch 'master' into core-updates
2018-05-30 02:21:29 -04:00
Mark H Weaver
a21bcd7079
Revert "gnu: swig: Patch for Octave 4.4."
...
This reverts commit 3771000f89
.
2018-05-30 02:18:26 -04:00
Rutger Helling
bfc25e015d
gnu: xpra: Update to 2.3.1.
...
* gnu/packages/xorg.scm (xpra): Update to 2.3.1.
[inputs]: Add libxi.
2018-05-30 08:14:23 +02:00
Ricardo Wurmus
b3e23b0216
gnu: ibus-libpinyin: Update to 1.10.0.
...
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.10.0.
[arguments]: Remove "autogen" phase.
[native-inputs]: Remove autoconf, automake, and libtool.
2018-05-30 07:42:20 +02:00
Ricardo Wurmus
8738c2b342
gnu: libpinyin: Update to 2.2.0.
...
* gnu/packages/ibus.scm (libpinyin): Update to 2.2.0.
[arguments]: Remove.
[inputs]: Remove model.
[native-inputs]: Remove autoconf, automake, and libtool.
2018-05-30 07:42:19 +02:00
Mark H Weaver
7627705293
gnu: vlc: Update to 3.0.3, and add more inputs.
...
Co-authored-by: Roel Janssen <roel@gnu.org>
* gnu/packages/video.scm (vlc): Update to 3.0.3.
[native-inputs]: Add flex, bison, and gettext-minimal.
[inputs]: Replace ffmpeg-2.8 with the latest ffmpeg. Replace lua-5.1 with
lua-5.2. Add eudev, fribidi, libarchive, libass, libavc1394, libbluray,
libcaca, libdca, libdvdnav, libdvdread, libebml, libidn, libmatroska,
libmodplug, libmpeg2, libraw1394, librsvg, libsecret, libupnp, libva,
libvdpau, libvpx, libx264, qtsvg, samba, speexdsp, taglib, twolame, unzip,
wayland, and wayland-protocols.
[arguments]: Add BUILDCC=gcc to configure-flags. In the 'patch-source' phase,
remove a vestigial substitution fix, enable the use of fribidi deprecated
interfaces, and adjust the file names in substitutions from "gui/qt4" to
"gui/qt". Move the 'regenerate-plugin-cache' phase after 'strip', and in it,
set the timestamps to 1 second after the epoch, and use 'invoke'. Add new
'wrap-executable' phase.
2018-05-30 00:17:35 -04:00
Mark H Weaver
7cb8d092d5
gnu: linux-libre@4.1: Update to 4.1.52.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.52.
2018-05-29 23:16:14 -04:00
Mark H Weaver
c0d7c1244a
Merge branch 'master' into core-updates
2018-05-29 21:20:47 -04:00
David Thompson
f274f0774d
gnu: tiled: Update to 1.1.5.
...
* gnu/packages/game-development.scm (tiled): Update to 1.1.5.
2018-05-29 21:20:27 -04:00
Rouby Pierre-Antoine
9cf879a573
gnu: Add go-github-com-gorilla-context.
...
* gnu/packages/golang.scm (go-github-com-gorilla-context): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine
daed2c5e6a
gnu: Add go-github-com-google-gofuzz.
...
* gnu/packages/golang.scm (go-github-com-google-gofuzz): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine
73fe19ef28
gnu: Add go-github-com-google-cadvisor.
...
* gnu/packages/golang.scm (go-github-com-google-cadvisor): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine
7979f7df9a
gnu: Add go-github-com-emicklei-go-restful.
...
* gnu/packages/golang.scm (go-github-com-emicklei-go-restful): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine
67836c5956
gnu: Add go-github-com-blang-semver.
...
* gnu/packages/golang.scm (go-github-com-blang-semver): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:08 -04:00
Rouby Pierre-Antoine
7c2ebbd4a6
gnu: Add go-github-com-urfave-cli.
...
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-29 18:39:05 -04:00
Kei Kebreau
5a14e81e41
gnu: Update shogun to 6.1.3.
...
* gnu/packages/machine-learning.scm (shogun): Update to 6.1.3.
[source]: Update snippet to remove proprietary software.
[arguments]: Rewrite list of symlinks in 'delete-broken-symlinks' phase.
Rewrite file lists given to substitute* in 'change-R-target-path' and
'fix-octave-modules' phases. Adjust 'fix-octave-modules' for the update.
Add 'move-rxcpp' phase. Rewrite configure-flags for the update.
[inputs]: Add eigen.
[native-inputs]: Add rxcpp.
2018-05-29 18:20:38 -04:00
Kei Kebreau
3771000f89
gnu: swig: Patch for Octave 4.4.
...
* gnu/packages/swig.scm (swig)[source]: Add patch.
* gnu/packages/patches/swig-octave-patches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-05-29 18:20:38 -04:00
Ricardo Wurmus
44884a9df8
gnu: eigen: Include unsupported features.
...
* gnu/packages/algebra.scm (eigen)[source]: Do not build the tests for
unsupported features, but include the files.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-05-29 18:20:38 -04:00
Kei Kebreau
3a354e104a
gnu: Add rxcpp.
...
* gnu/packages/machine-learning.scm (rxcpp): New variable.
2018-05-29 18:20:37 -04:00
Kei Kebreau
de658cc2f8
gnu: octave: Update to 4.4.0.
...
* gnu/packages/maths.scm (octave): Update to 4.4.0.
2018-05-29 18:20:37 -04:00
Leo Famulari
f0dd127d0a
gnu: mpd: Update to 0.20.20.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.20.
2018-05-29 18:00:34 -04:00
Ricardo Wurmus
e5bbfc7df0
gnu: mypaint-brushes: Fetch source from git.
...
* gnu/packages/gimp.scm (mypaint-brushes)[source]: Fetch source from git.
2018-05-29 23:24:32 +02:00
Ricardo Wurmus
5686be393b
gnu: mypaint-brushes: Fix build.
...
* gnu/packages/gimp.scm (mypaint-brushes)[arguments]: Remove bootstrap phase;
add "relax-dependency-version" phase.
2018-05-29 23:24:32 +02:00
Ricardo Wurmus
d2e1da18b0
gnu: python-pygobject: Delete broken tests.
...
* gnu/packages/glib.scm (python-pygobject)[arguments]: Add phase
"delete-broken-tests".
2018-05-29 23:24:32 +02:00
Ricardo Wurmus
1b043aeb85
gnu: python2-pygobject: Add native-inputs.
...
* gnu/packages/glib.scm (python2-pygobject)[native-inputs]: New field.
2018-05-29 23:17:48 +02:00
Ricardo Wurmus
59f6dfe552
gnu: python-pygobject: Update to 3.28.2.
...
* gnu/packages/glib.scm (python-pygobject): Update to 3.28.2.
[native-inputs]: Add python-pytest.
2018-05-29 22:43:00 +02:00
Ricardo Wurmus
660c9b4788
gnu: modem-manager: Fix build.
...
* gnu/packages/freedesktop.scm (modem-manager)[arguments]: Add configure flag
to avoid aborting on certain warnings.
2018-05-29 22:11:04 +02:00
Leo Famulari
b50196c3a4
gnu: Git: Update to 2.17.1 [fixes CVE 2018-{11234,11235}].
...
* gnu/packages/version-control.scm (git): Update to 2.17.1.
2018-05-29 16:00:02 -04:00
Tobias Geerinckx-Rice
0eeade9b53
gnu: pan: Update to 0.145.
...
* gnu/packages/mail.scm (pan): Update to 0.145.
2018-05-29 20:43:38 +02:00
Tobias Geerinckx-Rice
3b68a9b66e
gnu: disorderfs: Update to 0.5.3.
...
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.3.
[source]: Update upstream URI and re-use VERSION.
2018-05-29 20:43:37 +02:00
Tobias Geerinckx-Rice
e5ab03b51d
gnu: thefuck: Update to 3.27.
...
* gnu/packages/admin.scm (thefuck): Update to 3.27.
2018-05-29 20:43:37 +02:00
Leo Famulari
e3d779cc93
gnu: Wireshark: Update to 2.6.1.
...
* gnu/packages/networking.scm (wireshark): Update to 2.6.1.
2018-05-29 14:39:22 -04:00
Leo Famulari
4d0f463d6b
gnu: xdg-utils: Update to 1.1.3 [fixes CVE-2017-18266].
...
* gnu/packages/freedesktop.scm (xdg-utils): Update to 1.1.3.
2018-05-29 14:39:22 -04:00
Clément Lassieur
7c1445f86a
gnu: Add missing copyright line.
...
* gnu/packages/engineering.scm: Add missing copyright line for commit 6cedd61
.
2018-05-29 15:43:13 +02:00
Ricardo Wurmus
b347317ae6
Merge branch 'master' into core-updates
2018-05-29 15:41:06 +02:00
Clément Lassieur
6cedd61177
gnu: librecad: Fix build against Qt 5.11.
...
* gnu/packages/engineering.scm (librecad)[arguments]: Add missing headers.
2018-05-29 15:25:23 +02:00
Ricardo Wurmus
80e99aa467
gnu: emacs-s: Fix tests.
...
* gnu/packages/emacs.scm (emacs-s)[arguments]: Use full emacs package to fix
tests.
2018-05-29 14:05:11 +02:00
Ricardo Wurmus
06f863791a
gnu: emacs-dash: Update to 2.14.1.
...
* gnu/packages/emacs.scm (emacs-dash): Update to 2.14.1.
[source]: Fetch from git.
2018-05-29 14:05:11 +02:00
Ricardo Wurmus
bd6a699d73
gnu: emacs-minimal: Fix build by disabling gnutls support.
...
This is a follow-up to bb82c3d42b
.
* gnu/packages/emacs.scm (emacs-minimal)[arguments]: Pass configure flag to
indicate that gnutls support has intentionally been disabled.
2018-05-29 14:05:11 +02:00
Mathieu Othacehe
2206c7ad93
gnu: emacs: Update to 26.1.
...
* gnu/packages/emacs.scm (emacs): Update to 26.1,
[arguments]: disable tests as they do not exist in release.
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: Update patch
indentation and line numbers.
2018-05-29 14:05:11 +02:00
Vagrant Cascadian
6fe1657705
system: Add u-boot-puma-rk3399.
...
* gnu/packages/bootloaders.scm (u-boot-puma-rk3399): New variable.
(make-u-boot-package)[arguments]: Add '.rksd' files to the files installed
during custom 'install phase.
* gnu/bootloader/u-boot.scm (u-boot-puma-rk3399-bootloader):
New exported variable.
* gnu/system/install.scm (rk3399-puma-installation-os):
New exported variable.
* gnu/packages/firmware.scm (arm-trusted-firmware-puma-rk3399): New variable.
(rk3399-cortex-m0): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-05-29 10:46:13 +02:00
Leo Famulari
2a49aee4d1
gnu: khal: Update to 0.9.9.
...
* gnu/packages/calendar.scm (khal): Update to 0.9.9.
2018-05-29 00:41:32 -04:00
Mark H Weaver
82b695b834
Merge branch 'master' into core-updates
2018-05-28 20:45:37 -04:00
Danny Milosavljevic
ee3c8fbee2
gnu: make-u-boot-package: Sort printed configurations case-insensitively.
...
* gnu/packages/bootloaders.scm (make-u-boot-package): Sort printed
configurations case-insensitively.
2018-05-29 00:37:10 +02:00
Danny Milosavljevic
65212c42cd
gnu: u-boot-tools: Enable tests.
...
* gnu/packages/bootloaders.scm (u-boot-tools)[native-inputs]: Add openssl,
python2-coverage, python2-pytest, sdl.
[arguments]<#:make-flags>: Remove NO_SDL.
[arguments]<#:test-target>: Change to "tests".
[arguments]<#:phases>[patch]: New phase.
[arguments]<#:phases>[check]: Replace and move.
2018-05-28 23:52:07 +02:00
Clément Lassieur
a234ae38ba
gnu: wireshark: Fix build against Qt 5.11.
...
* gnu/packages/networking.scm (wireshark)[arguments]: Add a 'patch-source'
phase that includes missing headers.
2018-05-28 23:45:50 +02:00
Clément Lassieur
77cc8778a3
gnu: supercollider: Remove broken Qt dependency.
...
As suggested by Ricardo Wurmus.
This also removes IDE support.
* gnu/packages/audio.scm (supercollider)[arguments]: Add "-DSC_QT=off" to
configure flags.
[native-inputs]: Remove QTTOOLS.
[inputs]: Remove QTBASE, QTWEBKIT, QTSENSORS, QTDECLARATIVE and QTLOCATION.
2018-05-28 22:49:55 +02:00
Clément Lassieur
c7d901c130
gnu: vlc: Fix build against Qt 5.11.
...
* gnu/packages/video.scm (vlc)[arguments]: Add missing headers.
2018-05-28 22:40:53 +02:00
Mathieu Othacehe
a338b6f51d
Revert "gnu: emacs: Update to 26.1."
...
This reverts commit bb82c3d42b
. This commit
needs probably to be done on core-updates.
2018-05-28 19:10:17 +02:00
Mathieu Othacehe
bb82c3d42b
gnu: emacs: Update to 26.1.
...
* gnu/packages/emacs.scm (emacs): Update to 26.1,
[arguments]: disable tests as they do not exist in release.
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: Update patch
indentation and line numbers.
2018-05-28 18:40:21 +02:00
Ricardo Wurmus
3ec07ced8a
gnu: Add singularity.
...
* gnu/packages/linux.scm (singularity): New variable.
2018-05-28 17:36:09 +02:00
Ricardo Wurmus
e580597d25
gnu: Add squashfs-tools-next.
...
* gnu/packages/compression.scm (squashfs-tools-next): New variable.
2018-05-28 17:36:08 +02:00
Clément Lassieur
fdb85546dd
gnu: gajim: Update to 1.0.3.
...
* gnu/packages/messaging.scm (gajim): Update to 1.0.3.
2018-05-28 16:44:05 +02:00
Clément Lassieur
135745939d
gnu: python-nbxmpp: Update to 0.6.6.
...
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.6.
2018-05-28 16:43:55 +02:00
Mark H Weaver
fe365a3d0e
gnu: libssh2: Fix build on MIPS systems.
...
* gnu/packages/ssh.scm (libssh2)[arguments]: When building for MIPS, replace
the existing bootstrap phase instead of adding a new 'autoreconf' phase (in
the wrong place).
2018-05-28 09:06:13 -04:00
Fis Trivial
70770b9381
gnu: Add xtensor.
...
* gnu/packages/algebra.scm (xtensor): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:20:50 +02:00
Fis Trivial
6f3c850618
gnu: Add xtl.
...
* gnu/packages/cpp.scm (xtl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:19:29 +02:00
Fis Trivial
e3c0676adf
gnu: Add json-modern-cxx.
...
* gnu/packages/cpp.scm (json-modern-cxx): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 14:18:51 +02:00
Fis Trivial
385357c0d7
gnu: Add fifo-map.
...
* gnu/packages/cpp.scm (fifo-map): New variable.
* gnu/packages/patches/fifo-map-fix-flags-for-gcc.patch: New file.
* gnu/packages/patches/fifo-map-remove-catch.hpp.patch: New file.
* gnu/local.mk: Add new patch files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:48:52 +02:00
Fis Trivial
ad8a4d6dc8
gnu: Add amalgamate.
...
This commit also re-orders some module statements.
* gnu/packages/code.scm (amalgamate): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:45:39 +02:00
Fis Trivial
56e72c0084
gnu: Add catch-framework2.
...
* gnu/packages/check.scm (catch-framework2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-28 13:39:57 +02:00
Mark H Weaver
25816c4306
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-05-27 17:39:29 -04:00
Pierre Langlois
8a6d16b897
gnu: clementine: Update snapshot.
...
* gnu/package/music.scm (clementine): Update snapshot to 4619a4c1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:06 +03:00
Pierre Langlois
1222a64c02
gnu: libechonest: Remove package.
...
It appears the "EchoNest" service isn't available anymore which makes this
package obsolete.
* gnu/packages/music.scm (libechonest): Remove variable.
(clementine)[inputs]: Remove libechonest.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:05 +03:00
Pierre Langlois
01c4869003
gnu: libmygpo-qt: Fix Qt 5.11 build.
...
The update to Qt 5.11.0 broke libmygpo-qt. It turned it was using a deprecated
CMake function (qt5_use_moduldes). Let's pick up two upstream patches that
fix the issue: https://github.com/gpodder/libmygpo-qt/pull/15
As mentioned in the the pull request, there is now a test failure but it looks
harmless.
* gnu/packages/patches/libmygpo-qt-fix-qt-5.11.patch,
gnu/packages/patches/libmygpo-qt-missing-qt5-modules.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/music.scm (libmygpo-qt)[source]: Add patches.
[arguments]: Build tests but do not run them.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2018-05-27 22:33:01 +03:00
Julien Lepiller
2101cc3fb6
gnu: gnu: Make alsa find its plugins by setting ALSA_PLUGIN_DIR.
...
* gnu/packages/patches/alsa-lib-add-environment-variable.patch: New
file.
* gnu/packages/linux.scm (alsa-lib)[source]: Use it.
[native-search-paths]: Add ALSA_PLUGIN_DIR.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-05-27 19:05:34 +02:00
Julien Lepiller
3a69f5f2d3
gnu: Add java-logback-classic.
...
* gnu/packages/java.scm (java-logback-classic): New variable.
2018-05-27 18:47:15 +02:00
Julien Lepiller
7d8207a4c1
gnu: Add java-logback-core.
...
* gnu/packages/java.scm (java-logback-core): New variable.
2018-05-27 18:47:09 +02:00
Julien Lepiller
3402e651c8
gnu: Add java-janino.
...
* gnu/packages/java.scm (java-janino): New variable.
2018-05-27 18:47:07 +02:00
Julien Lepiller
3fa18fe796
gnu: Add java-commons-compiler.
...
* gnu/packages/java.scm (java-commons-compiler): New variable.
2018-05-27 18:47:05 +02:00
Julien Lepiller
66006fe526
gnu: Add java-commons-jxpath.
...
* gnu/packages/java.scm (java-commons-jxpath): New variable.
2018-05-27 18:47:03 +02:00
Julien Lepiller
7049dea185
gnu: Add java-eclipse-sisu-plexus.
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* gnu/packages/java.scm (java-eclipse-sisu-plexus): New variable.
2018-05-27 18:47:01 +02:00
Julien Lepiller
1a1810f534
gnu: Add java-eclipse-sisu-inject.
...
* gnu/packages/java.scm (java-eclipse-sisu-inject): New variable.
2018-05-27 18:46:58 +02:00
Julien Lepiller
a1a5ef2094
gnu: Add java-jsr250.
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* gnu/packages/java.scm (java-jsr250): New variable.
2018-05-27 18:46:38 +02:00
Rutger Helling
9b9db6c482
gnu: xonotic: Correct licenses.
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* gnu/packages/games.scm (xonotic-data)[license]: Refer to correct file.
* gnu/packages/games.scm (xonotic)[license]: Refer to correct file.
2018-05-27 10:24:06 +02:00
Efraim Flashner
865003433f
gnu: qtconnectivity: Enable previously failing test.
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* gnu/packages/qt.scm (qtconnectivity)[arguments]: Remove custom
'disable-failing-tests phase.
2018-05-27 10:21:33 +03:00
Efraim Flashner
1f52eb7be7
gnu: qt: Update to 5.11.0.
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* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2,
qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d,
qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech):
Update to 5.11.0.
[source]: Update source uri.
(qtbase)[source]: Don't remove bundled sqlite.
[inputs]: Remove sqlite.
[arguments]: Use 'invoke'. Use bundled sqlite.
(qtsvg, qtmultimedia, qtcanvas3d)[arguments]: Use 'invoke'.
(qtremoteobjects)[arguments]: Skip new integration test.
2018-05-27 09:05:56 +03:00
Mark H Weaver
1640f16e78
Merge branch 'master' into core-updates
2018-05-27 01:26:09 -04:00
Mark H Weaver
a4e45acdc0
gnu: linux-libre: Update to 4.16.12.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.12.
(%linux-libre-hash): Update hash.
2018-05-27 01:23:26 -04:00
Mark H Weaver
52a1379814
gnu: linux-libre@4.14: Update to 4.14.44.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.44.
(%linux-libre-4.14-hash): Update hash.
2018-05-27 01:22:36 -04:00