Commit Graph

29276 Commits (2f28ffd81d72307fb3ddf775662c74bac92101a5)

Author SHA1 Message Date
Tobias Geerinckx-Rice 4795e5e177
gnu: units: Update to 2.18.
* gnu/packages/maths.scm (units): Update to 2.18.
2018-10-27 04:47:56 +02:00
Tobias Geerinckx-Rice 6d9a690927
gnu: parallel: Update to 20181022.
* gnu/packages/parallel.scm (parallel): Update to 20181022.
2018-10-27 04:47:19 +02:00
Tobias Geerinckx-Rice 574d877e40
gnu: gvpe: Update to 3.1.
* gnu/packages/vpn.scm (gvpe): Update to 3.1.
[source]: Remove obsolete snippet.
[native-inputs]: Add pkg-config.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b2d286545d
gnu: gama: Update to 2.01.
* gnu/packages/gps.scm (gama): Update to 2.01.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice b106b78cf8
gnu: perl-x11-xcb: Update to 0.18.
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.18.
2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice 429a332b1c
gnu: flatbuffers: Update to 1.10.0.
* gnu/packages/serialization.scm (flatbuffers): Update to 1.10.0.
2018-10-27 04:47:18 +02:00
Eric Bavier 829785c11d
gnu: Add tnef.
* gnu/packages/mail.scm (tnef): New variable.
2018-10-26 21:16:42 -05:00
HiPhish 01a0a0c445
gnu: Add lua5.1-lpeg and lua5.1-lmpack.
* gnu/packages/lua.scm (lua5.1-lpeg): New variable.
* gnu/packages/serialization.scm (lua5.1-libmpack): New variable.

The packages lua-lpeg and lua-libmpack had no Lua 5.1 variants. These
packages will be needed to build Neovim properly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:17:00 +02:00
Pierre-Antoine Rouby 3239dcd38d
gnu: Add jp2a.
* gnu/packages/image.scm: New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-26 21:16:13 +02:00
Ludovic Courtès fdf0248428
gnu: sbcl-lift: Fix 'license' field.
The invalid 'license' field was preventing evaluations from completing.

* gnu/packages/lisp.scm (sbcl-lift)[license]: Change to LICENSE:EXPAT.
2018-10-26 21:07:03 +02:00
Nikolai Merinov 2e2b8635b9
gnu: rust: Update to 1.28.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.27): ... this.
(rust): New variable.
2018-10-26 18:11:15 +02:00
Nikolai Merinov e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues.
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build.  Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
2018-10-26 18:11:15 +02:00
Meiyo Peng 1fdcee026b
gnu: Add lxqt.
* gnu/packages/lxqt.scm (lxqt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng a457e3f6ef
gnu: libqtxdg: Simplify configure flags.
* gnu/packages/lxqt.scm (libqtxdg)[arugemnts]: Use relative path for
'QTXDGX_ICONENGINEPLUGIN_INSTALL_PATH'.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:05 +08:00
Meiyo Peng 097166dfb0
gnu: lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.
* gnu/packages/lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:07:04 +08:00
Meiyo Peng 31fd62c8ca
gnu: Add obconf-qt.
* gnu/packages/lxqt.scm (obconf-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 22:06:57 +08:00
Meiyo Peng 32b74b7028
gnu: Add compton-conf.
* gnu/packages/lxqt.scm (compton-conf): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:41:38 +08:00
Meiyo Peng 9886134cc6
gnu: Add qps.
* gnu/packages/lxqt.scm (qps): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:36:43 +08:00
Meiyo Peng 7e9e775f44
gnu: Add qterminal.
* gnu/packages/lxqt.scm (qterminal): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:31:15 +08:00
Meiyo Peng 4b88ab554c
gnu: Add screengrab.
* gnu/packages/lxqt.scm (screengrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:20:21 +08:00
Meiyo Peng 604bdae7e5
gnu: Add lximage-qt.
* gnu/packages/lxqt.scm (lximage-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:12:17 +08:00
Meiyo Peng 26127ebb97
gnu: lxqt.scm: Sort packages into base, core, etc.
* gnu/packages/lxqt.scm: Sort packages into base, core, etc.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 21:05:12 +08:00
Meiyo Peng 0aab234954
gnu: Add qtermwidget.
* gnu/packages/lxqt.scm (qtermwidget): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-26 18:54:16 +08:00
Tobias Geerinckx-Rice 21c51ebd66
gnu: hplip: Update home page.
* gnu/packages/cups.scm (hplip)[home-page]: Follow its permanent
redirection.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice b17004f9f9
gnu: hplip: Update to 3.18.9.
* gnu/packages/cups.scm (hplip): Update to 3.18.9.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 2fba511e0f
gnu: libsigrok: Update to 0.5.1.
* gnu/packages/electronics.scm (libsigrok): Update to 0.5.1.
[arguments]: Adjust to split udev rules and clean up a little.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice 0e8e29088f
gnu: dnsmasq: Update to 2.80 [security fixes].
* gnu/packages/dns.scm (dnsmasq): Update to 2.80.
2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice e81ddedaef
gnu: tinc: Use HTTPS for sources and home page.
* gnu/packages/vpn.scm (tinc)[source, home-page]: Use HTTPS.
2018-10-26 02:30:51 +02:00
Leo Famulari dea0178fb1
gnu: Mercurial: Update to 4.7.2.
* gnu/packages/version-control.scm (mercurial): Update to 4.7.2.
2018-10-25 20:00:27 -04:00
Meiyo Peng 84f6a9907b
gnu: Add pavucontrol-qt.
* gnu/packages/lxqt.scm (pavucontrol-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:38:57 +08:00
Meiyo Peng 8b1d43a755
gnu: Add lxqt-themes.
* gnu/packages/lxqt.scm (lxqt-themes): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:34:55 +08:00
Meiyo Peng 5663b5b073
gnu: Add lxqt-qtplugin.
* gnu/packages/lxqt.scm (lxqt-qtplugin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:25:54 +08:00
Meiyo Peng 643961bbc6
gnu: Add lxqt-powermanagement.
* gnu/packages/lxqt.scm (lxqt-powermanagement): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:21:26 +08:00
Meiyo Peng ca302c3e8c
gnu: Add lxqt-openssh-askpass.
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:17:16 +08:00
Meiyo Peng bf0da63aae
gnu: Add lxqt-policykit.
* gnu/packages/lxqt.scm (lxqt-policykit): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng a98000a462
gnu: Add lxqt-notificationd.
* gnu/packages/lxqt.scm (lxqt-notificationd): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:19 +08:00
Meiyo Peng f2b48558df
gnu: lxqt.scm: Move qttools from inputs to native-inputs.
* gnu/packages/lxqt.scm: Move qttools from inputs to native-inputs.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 21:12:13 +08:00
Meiyo Peng 35bfe41a01
gnu: Add lxqt-config.
* gnu/packages/lxqt.scm (lxqt-config): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-25 19:16:18 +08:00
Ricardo Wurmus 7b63047c94
gnu: Add r-sjplot.
* gnu/packages/cran.scm (r-sjplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 489a6178e6
gnu: Add r-ggeffects.
* gnu/packages/cran.scm (r-ggeffects): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 413944234c
gnu: Add r-glmmtmb.
* gnu/packages/cran.scm (r-glmmtmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus aa4bde0b3a
gnu: Add r-sjstats.
* gnu/packages/cran.scm (r-sjstats): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 3b8a3f5548
gnu: Add r-tmb.
* gnu/packages/cran.scm (r-tmb): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9b3ecb60e2
gnu: Add r-bayesplot.
* gnu/packages/cran.scm (r-bayesplot): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus bd531e83d1
gnu: Add r-coin.
* gnu/packages/cran.scm (r-coin): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 63fcb88a50
gnu: Add r-pwr.
* gnu/packages/cran.scm (r-pwr): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 55a08dceb5
gnu: Add r-emmeans.
* gnu/packages/cran.scm (r-emmeans): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 7753b54366
gnu: Add r-multcomp.
* gnu/packages/cran.scm (r-multcomp): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 6ce07cf99d
gnu: Add r-th-data.
* gnu/packages/cran.scm (r-th-data): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 302db58552
gnu: Add r-sandwich.
* gnu/packages/cran.scm (r-sandwich): New variable.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 69bb2d9966
gnu: r-sjmisc: Update to 2.7.5.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.5.
2018-10-25 05:17:42 +02:00
Ricardo Wurmus 9bf745c931
gnu: r-sjlabelled: Update to 1.0.14.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.14.
2018-10-25 05:17:42 +02:00
Tobias Geerinckx-Rice 9ac59ad30a
gnu: sfml: Update to 2.5.1.
* gnu/packages/game-development.scm (sfml): Update to 2.5.1.
2018-10-25 04:59:33 +02:00
Tobias Geerinckx-Rice 95f6adae34
gnu: sfml: Don't use unstable tarball.
* gnu/packages/game-development.scm (sfml)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-10-25 04:59:32 +02:00
Tobias Geerinckx-Rice b865e7c254
gnu: cdogs-sdl: Update to 0.6.8.
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.8.
2018-10-25 04:59:29 +02:00
Ricardo Wurmus e2ec95c4eb
gnu: Add pdfpc.
* gnu/packages/pdf.scm (pdfpc): New variable.
2018-10-25 01:08:09 +02:00
Tobias Geerinckx-Rice f65fdd95df
gnu: Add hangups.
* gnu/packages/messaging.scm (hangups): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 56a5ef4cb2
gnu: Add python-mechanicalsoup.
* gnu/packages/python-web.scm (python-mechanicalsoup)
(python2-mechanicalsoup): New public variable.
2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice 11d99192c7
gnu: Add python-reparser.
* gnu/packages/python.scm (python-reparser, python2-reparser):
New public variable.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice d4eb8a21a6
gnu: Add python-readlike.
* gnu/packages/python.scm (python-readlike, python2-readlike):
New public variables.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice 5b59c77585
gnu: minixml: Update to 2.12.
* gnu/packages/xml.scm (minixml): Update to 2.12.
[arguments]: Add the resulting libraries to the build's RUNPATH.
2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice ac9f481979
gnu: iproute2: Update to 4.19.0.
* gnu/packages/linux.scm (iproute): Update to 4.19.0.
2018-10-24 21:34:20 +02:00
Tobias Geerinckx-Rice f437e39aa2
gnu: loksh: Use PREFIX.
* gnu/packages/shells.scm (loksh)[argumentss]: Substitute PREFIX for
DESTDIR #:make-flags.
2018-10-24 21:34:20 +02:00
Meiyo Peng c1144c78ad
gnu: Add libkscreen.
* gnu/packages/kde.scm (libkscreen): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng a6b941ddd1
gnu: lxqt.scm: Add prefix to licenses imports.
* gnu/packages/lxqt.scm: Import (guix licenses) with prefix "license:".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng 34e08de321
gnu: Add lxqt-admin.
* gnu/packages/lxqt.scm (lxqt-admin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng 2bdab26f06
gnu: Add lxqt-about.
* gnu/packages/lxqt.scm (lxqt-about): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng d6fd4a76eb
gnu: Add pcmanfm-qt.
* gnu/packages/lxqt.scm (pcmanfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng 79f9e4e0b5
gnu: Add libfm-qt.
* gnu/packages/lxqt.scm (libfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng dbb4f7d0a6
gnu: Add lxqt-sudo.
* gnu/packages/lxqt.scm (lxqt-sudo): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng cc7f417572
gnu: Add lxqt-runner.
* gnu/packages/lxqt.scm (lxqt-runner): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng af291d1cdf
gnu: Add lxqt-panel.
* gnu/packages/lxqt.scm (lxqt-panel): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng fbe645eafa
gnu: Add libsysstat.
* gnu/packages/lxqt.scm (libsysstat): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Meiyo Peng fab3484657
gnu: Add lxqt-globalkeys.
* gnu/packages/lxqt.scm (lxqt-globalkeys): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-24 22:37:24 +08:00
Pierre Neidhardt 96b4977a19
gnu: Add gx-go.
* gnu/packages/ipfs.scm (gx-go): New variable.
2018-10-24 14:41:44 +02:00
Pierre Neidhardt e82ae67302
gnu: Add go-github-com-whyrusleeping-gx-util.
* gnu/packages/ipfs.scm (go-github-com-whyrusleeping-gx-util): New variable.
2018-10-24 14:41:44 +02:00
Pierre Neidhardt 5b6c3ad0cd
gnu: Add go-github-com-kr-fs.
* gnu/packages/golang.scm (go-github-com-kr-fs): New variable.
2018-10-24 14:41:44 +02:00
Efraim Flashner 96bdf904ac
gnu: dotherside: Update home-page.
* gnu/packages/qt.scm (dotherside)[home-page]: Fix project's home-page.
2018-10-24 14:17:53 +03:00
Pierre Neidhardt 202c1b9703
gnu: Add gx.
* gnu/packages/ipfs.scm (gx): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 566f13f845
gnu: Add go-github-com-ipfs-go-ipfs-api.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 247b1bd2b6
gnu: Add go-github-com-ipfs-go-ipfs-cmdkit-files.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): New variable.
2018-10-24 12:27:59 +02:00
Pierre Neidhardt 56eb7bd33c
gnu: Add go-github-com-whyrusleeping-stump.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-stump): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38566e975e
gnu: Add go-github-com-whyrusleeping-progmeter.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-progmeter): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 7bd9020e48
gnu: Add go-github-com-whyrusleeping-json-filter.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-json-filter): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt b5bb0b500b
gnu: Add go-github-com-urfave-cli.
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 20f48e4b5d
gnu: Add go-github-com-sabhiram-go-gitignore.
* gnu/packages/golang.scm (go-github-com-sabhiram-go-gitignore): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt ad8d463740
gnu: Add go-github-com-cheekybits-is.
* gnu/packages/golang.scm (go-github-com-cheekybits-is): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 38d346dcc6
gnu: Add go-github-com-whyrusleeping-tar-utils.
* gnu/packages/golang.scm (go-github-com-whyrusleeping-tar-utils): New variable.
2018-10-24 12:13:50 +02:00
Pierre Neidhardt 66fb6e292a
gnu: Add go-github-com-multiformats-go-multiaddr-net.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr-net): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt e53121b36f
gnu: Add go-github-com-multiformats-go-multiaddr.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 8cb9128173
gnu: Add go-github-com-mitchellh-go-homedir.
* gnu/packages/golang.scm (go-github-com-mitchellh-go-homedir): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 77d8a91792
gnu: Add go-github-com-libp2p-go-libp2p-metrics.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-metrics): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 43a5c17737
gnu: Add go-github-com-libp2p-go-libp2p-protocol.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-protocol): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 1db1e3c79e
gnu: Add go-github-com-libp2p-go-libp2p-peer.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-peer): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 2e42e587b4
gnu: Add go-github-com-multiformats-go-multihash.
* gnu/packages/golang.scm (go-github-com-multiformats-go-multihash): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 9a7f157571
gnu: Add go-github-com-spaolacci-murmur3.
* gnu/packages/golang.scm (go-github-com-spaolacci-murmur3): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 90f2a84805
gnu: Add go-github-com-minio-blake2b-simd.
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 27d59d8bf5
gnu: Add go-github-com-gxed-hashland-keccakpg.
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 15272a5053
gnu: Add go-github-com-mr-tron-base58.
* gnu/packages/golang.scm (go-github-com-mr-tron-base58): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt 71f3680499
gnu: Add go-github-com-libp2p-go-libp2p-crypto.
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-crypto): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt ff2d11c3ce
gnu: Add go-github-com-minio-sha256-simd.
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): New variable.
2018-10-24 12:13:49 +02:00
Pierre Neidhardt d5599afadf
gnu: Add go-github-com-btcsuite-btcd-btcec.
* gnu/packages/golang.scm (go-github-com-btcsuite-btcd-btcec): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 171c3259fc
gnu: Add go-github-com-btcsuite-btclog.
* gnu/packages/golang.scm (go-github-com-btcsuite-btclog): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 6a95e3a3a4
gnu: Add go-github-com-davecgh-go-spew.
* gnu/packages/golang.scm (go-github-com-davecgh-go-spew): New variable.
2018-10-24 12:13:48 +02:00
Pierre Neidhardt 386bd7ba39
gnu: Add go-github-com-libp2p-go-flow-metrics.
* gnu/packages/golang.scm (go-github-com-libp2p-go-flow-metrics): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 48a279ee14
gnu: go-golang-org-x-crypto-union: Wrap all crypto packages.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Include
go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160,
go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3 in union.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 19789c8b91
gnu: Add go-golang-org-x-crypto-sha3.
* gnu/packages/golang.scm (go-golang-org-x-crypto-sha3): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt 6fa257cca7
gnu: Add go-golang-org-x-crypto-blake2s.
* gnu/packages/golang.scm (go-golang-org-x-crypto-blake2s): New variable.
2018-10-24 12:13:22 +02:00
Pierre Neidhardt a9010ead4c
gnu: Add go-golang-org-x-crypto-ripemd160.
* gnu/packages/golang.scm (go-golang-org-x-crypto-ripemd160): New variable.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 7eb0ad380b
gnu: Add go-golang-org-x-crypto-ed25519.
* gnu/packages/golang.scm (go-golang-org-x-crypto-ed25519): New variable.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 830dc25176
gnu: Move go-golang-org-x-crypto-union from syncthing.scm to golang.scm
* gnu/packages/syncthing.scm (go-golang-org-x-crypto-union): Delete.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Add.
2018-10-24 12:13:21 +02:00
Pierre Neidhardt 5787e15230
gnu: Move go-github-com-gogo-protobuf* from syncthing.scm to golang.scm
* gnu/packages/syncthing.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Delete.

* gnu/packages/golang.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Add.
2018-10-24 10:46:05 +02:00
Tobias Geerinckx-Rice 569adffe4b
gnu: pcsc-lite: Update to 1.8.24.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.24.
2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice 716cd19ad2
gnu: loksh: Update to 6.4.
* gnu/packages/shells.scm (loksh): Update to 6.4.
[inputs]: Add ncurses.
2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice e5d757709a
gnu: loksh: Don't use unstable tarball.
* gnu/packages/shells.scm (loksh)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-24 05:59:35 +02:00
Tobias Geerinckx-Rice d0d3ed6dfc
gnu: tinc: Update to 1.0.35 [fixes CVE-2018-{16737,16738,16758}].
* gnu/packages/vpn.scm (tinc): Update to 1.0.35.
2018-10-24 05:59:35 +02:00
Mark H Weaver ce7ceef37f
gnu: linux-libre: Update to 4.19.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.
(%linux-libre-hash): Update hash.
(%linux-libre-4.18-patches): Rename to ...
(%linux-libre-4.19-patches): ... this, and remove a patch that is
no longer needed.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-4.19-patches instead of %linux-libre-4.18-patches.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: Remove files.
* gnu/packages/aux-files/linux-libre/4.19-arm.conf,
gnu/packages/aux-files/linux-libre/4.19-arm64.conf,
gnu/packages/aux-files/linux-libre/4.19-i686.conf,
gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2018-10-23 22:57:14 -04:00
Tobias Geerinckx-Rice d9bcdfce29
gnu: mongodb: Use INVOKE.
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 94617bddb0
gnu: libbytesize: Update to 1.4.
* gnu/packages/c.scm (libbytesize): Update to 1.4.
[source]: Parametrise.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 50f5aa4b9e
gnu: xmlsec: Update to 1.2.27.
* gnu/packages/xml.scm (xmlsec): Update to 1.2.27.
[source]: Don't rely on NAME.
2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice 0ba0ab814a
gnu: Add wavemon.
* gnu/packages/hardware.scm (wavemon): New public variable.
2018-10-24 03:58:20 +02:00
Mark H Weaver d78587edca
gnu: icecat: Add fixes from mozilla-esr60 [security fixes].
Includes fixes for CVE-2018-12389, CVE-2018-12390, CVE-2018-12391,
CVE-2018-12392, CVE-2018-12393, CVE-2018-12395, CVE-2018-12396, and
CVE-2018-12397.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected changesets from the
upstream mozilla-esr60 repository.  Relabel some previously existing patches
to reflect CVE assignments.
2018-10-23 19:41:47 -04:00
Brett Gilio b4237a6ec0
gnu: emacs-nov-el: Update to 0.2.6.
* gnu/packages/emacs.scm (emacs-nov-el): Update to 0.2.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
Leo Famulari 12995856e2
gnu: libssh: Fetch the source code more efficiently.
* gnu/packages/ssh.scm (libssh)[source]: Use the git:// protocol.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-23 23:58:39 +02:00
Laura Lazzati b55697fbb4
gnu: Add r-aspi.
* gnu/packages/cran.scm (r-aspi): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2018-10-23 23:20:13 +02:00
Pierre Neidhardt d89872f955
gnu: sbcl-parse-float: Remove comment about license.
* gnu/packages/lisp.scm (sbcl-parse-float): The license really is public domain.
2018-10-23 20:36:58 +02:00
Meiyo Peng bf076d8ba6
gnu: Add libstatgrab.
* gnu/packages/lxqt.scm (libstatgrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:39:09 +08:00
Meiyo Peng 64fac507dd
gnu: Add libdbusmenu-qt.
* gnu/packages/lxqt.scm (libdbusmenu-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 22:23:49 +08:00
Meiyo Peng d58aefdf06
gnu: lxqt.scm: Sort packages alphabetically.
* gnu/packages/lxqt.scm: Sort packages alphabetically.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:37:48 +08:00
Meiyo Peng 088096aa0e
gnu: lxqt-build-tools: Update download URL and home page URL.
* gnu/packages/lxqt.scm (lxqt-build-tools)
[source]: Update download URL to the 'lxqt' repository.
[home-page]: Use HTTPS.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:33:45 +08:00
Meiyo Peng 70c488f8dd
gnu: lxqt-session: Update to 0.13.0.
* gnu/packages/lxqt.scm (lxqt-session): Update to 0.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-23 21:29:55 +08:00
Nicolas Goaziou f0ac761f95
gnu: grammalecte: Update home page.
* gnu/packages/dictionaries.scm (grammalecte)[home-page]: Update URL.
2018-10-23 09:59:16 +02:00
Leo Famulari a89f731b15
gnu: Xiph: Use HTTPS URLs.
* gnu/packages/xiph.scm (libogg, libvorbis, libtheora, speex, speexdsp, ao,
flac, libkate, vorbis-tools, opus-tools opusfile, icecast, libshout)[source]:
Use HTTPS URLs.
(icecast)[home-page]: Use HTTPS URL.
2018-10-23 00:18:17 -04:00
Leo Famulari a640492f6d
gnu: Opus: Update to 1.3.
* gnu/packages/xiph.scm (opus): Update to 1.3.
2018-10-23 00:18:17 -04:00
Leo Famulari d0ff383ed8
gnu: opus-tools: Update to 0.2.
* gnu/packages/xiph.scm (opus-tools): Update to 0.2.
[native-inputs]: Add pkg-config.
[inputs]: Add libopusenc and opusfile. Remove libogg and opus.
2018-10-23 00:18:17 -04:00
Leo Famulari 844b3272da
gnu: opusfile: Propagate dependencies required in pkg-config.
* gnu/packages/xiph.scm (opusfile)[inputs]: Move libogg and openssl to
propagated-inputs.
2018-10-23 00:18:17 -04:00
Leo Famulari ce08d54c35
gnu: Add libopusenc.
* gnu/packages/xiph.scm (libopusenc): New variable.
2018-10-23 00:18:13 -04:00
Tobias Geerinckx-Rice d6a9c4ecfb
gnu: unbound: Update to 1.8.1.
* gnu/packages/dns.scm (unbound): Update to 1.8.1.
2018-10-23 04:18:50 +02:00
Tobias Geerinckx-Rice 661da25133
gnu: Remove duplicate import from (gnu packages messaging).
* gnu/packages/messaging.scm (define-module): Remove duplicate module
import.  Order the remainder alphabetically.
2018-10-23 04:18:40 +02:00
Tobias Geerinckx-Rice ee5c83533d
gnu: cppcheck: Update to 1.85.
* gnu/packages/check.scm (cppcheck): Update to 1.85.
2018-10-23 03:14:31 +02:00
Tobias Geerinckx-Rice 3891c38346
gnu: bs1770gain: Update to 0.5.1.
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.1.
2018-10-23 03:14:30 +02:00
Tobias Geerinckx-Rice 2820e31590
gnu: zstd: Update to 1.3.7.
* gnu/packages/compression.scm (zstd): Update to 1.3.7.
2018-10-23 03:14:30 +02:00
Marius Bakke 63abd1e2a3
gnu: python-pymongo: Update to 3.7.2.
* gnu/packages/python.scm (python-pymongo): Update to 3.7.2.
2018-10-22 23:01:19 +02:00
Marius Bakke 47d7c10387
gnu: python-sure: Update to 1.4.11.
* gnu/packages/python.scm (python-sure): Update to 1.4.11.
2018-10-22 23:01:19 +02:00
Marius Bakke 9b9aaa57e3
gnu: python-markdown: Update to 3.0.1.
* gnu/packages/python.scm (python-markdown): Update to 3.0.1.
[arguments]: Remove.
2018-10-22 23:01:19 +02:00
Marius Bakke 1b50df7d5b
gnu: python-markdown: Update home page.
* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
2018-10-22 23:01:19 +02:00
Marius Bakke cb61baf0e7
gnu: python-m2crypto: Update to 0.30.1.
* gnu/packages/python-crypto.scm (python-m2crypto): Update to 0.30.1.
2018-10-22 23:01:19 +02:00
Marius Bakke e810de3e68
gnu: python-m2crypto: python-typing is only needed for python2.
* gnu/packages/python-crypto.scm (python-m2crypto)[propagated-inputs]: Remove.
[properties]: New field.
(python2-m2crypto)[propagated-inputs]: Add PYTHON2-TYPING.
2018-10-22 23:01:19 +02:00
Marius Bakke 90fb136ff7
gnu: xorg-server: Update to 1.20.2.
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.2.
2018-10-22 23:01:19 +02:00
Marius Bakke 4350cacdf7
gnu: xf86-input-libinput: Update to 0.28.1.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.28.1.
2018-10-22 23:01:18 +02:00
Marius Bakke 3743e117a6
gnu: libmd: Update to 1.0.1.
* gnu/packages/crypto.scm (libmd): Update to 1.0.1.
2018-10-22 23:01:18 +02:00
Marius Bakke f38eedd518
gnu: samba: Update to 4.8.6.
* gnu/packages/samba.scm (samba): Update to 4.8.6.
2018-10-22 23:01:18 +02:00
Marius Bakke 3ad0a35890
gnu: Add GN.
* gnu/packages/build-tools.scm (gn): New public variable.
2018-10-22 23:01:18 +02:00
Marius Bakke f232c875d2
gnu: python-lazy-object-proxy: Update to 1.3.1.
* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
2018-10-22 23:01:18 +02:00
Marius Bakke b45688313b
gnu: python-mistune: Update to 0.8.4.
* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
2018-10-22 23:01:18 +02:00
Meiyo Peng 9861bcd182
gnu: liblxqt: Update to 0.13.0.
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Meiyo Peng 50401c2a68
gnu: libqtxdg: Update to 3.2.0.
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.2.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-10-22 22:09:51 +08:00
Christopher Lemmer Webber 51f4e36cb9
gnu: Add emacs-scribble-mode.
* gnu/packages/emacs.scm (emacs-scribble-mode): New variable.
2018-10-22 09:59:42 -04:00
Nicolas Goaziou 3a352a4405
gnu: snap: Update to 4.2.2.2.
* gnu/packages/education.scm (snap): Update to 4.2.2.2.  Update source URL.
2018-10-22 15:56:38 +02:00
Ricardo Wurmus 09aa3d063a
gnu: Add r-ruvseq.
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
2018-10-22 13:00:24 +02:00
Leo Famulari 318ec0a896
gnu: livemedia-utils: Update to 2018.10.17 [fixes CVE-2018-4013].
* gnu/packages/video.scm (livemedia-utils): Update to 2018.10.17.
2018-10-22 03:37:53 -04:00
Leo Famulari 69c69c2d8e
gnu: libmpdclient: Update to 2.16.
* gnu/packages/mpd.scm (libmpdclient): Update to 2.16.
2018-10-21 23:55:28 -04:00
Tobias Geerinckx-Rice dc3dfa131f
gnu: knot: Update to 2.7.3.
* gnu/packages/dns.scm (knot): Update to 2.7.3.
2018-10-22 00:40:05 +02:00
Leo Famulari df71447e99
gnu: OpenSSH: Update to 7.9p1.
* gnu/packages/ssh.scm (openssh): Update to 7.9p1.
2018-10-21 18:33:58 -04:00
Pierre Langlois ff598353c0
gnu: light: Update to 1.2.
* gnu/packages/linux.scm (light): Update to 1.2.
[source]: Switch to url-fetch.
[arguments]: Remove.
[native-inputs]: Remove help2man. Add autoconf and automake.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-21 23:54:46 +02:00
Luther Thompson 16d212510a
gnu: Add python-ilinkedlist.
* gnu/packages/python.scm (python-ilinkedlist): New variable.
2018-10-21 23:54:46 +02:00
Ricardo Wurmus f8ee22fc8b
gnu: flexbar: Update to 3.4.0.
* gnu/packages/bioinformatics.scm (flexbar): Update to 3.4.0.
[source]: Fetch from git.
[arguments]: Adjust check and install phases.
[home-page]: Update to new home at Github.
[license]: Change to bsd-3.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4d93a9a36c
gnu: seqan: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (seqan): Update to 2.4.0.
[native-inputs]: Replace bzip2 with xz.
(seqan-1): New variable.
(tophat)[inputs]: Use seqan-1.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 4b8f4536ce
gnu: khmer: Update to 2.1.2.
* gnu/packages/bioinformatics.scm (khmer): Update to 2.1.2.
[source]: Fetch from git; remove bundled libraries in snippet.
[arguments]: Remove "set-paths" phase; remove "post-install-check" phase;
remove "reset-gzip-timestamps" phase.
[native-inputs]: Remove seqan and python-nose; add python-cython,
python-pytest, and python-pytest-runner.
[inputs]: Remove gcc-4.9.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 50e33c3a8c
gnu: python-screed: Update to 1.0.
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
2018-10-21 23:06:47 +02:00
Ricardo Wurmus 0db75f7a79
gnu: fasttree: Use INVOKE.
* gnu/packages/bioinformatics.scm (fasttree)[arguments]: Use INVOKE; simplify
install phase.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 38622ccd14
gnu: express-beta-diversity: Update to 1.0.8.
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus c96ca68f31
gnu: edirect: Update to 10.2.20181018.
* gnu/packages/bioinformatics.scm (edirect): Update to 10.2.20181018.
[arguments]: Add simple check phase; simplify other phases.
[inputs]: Add perl-xml-simple.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 949fa34b84
gnu: eigensoft: Update to 7.2.1.
* gnu/packages/bioinformatics.scm (eigensoft): Update to 7.2.1.
[arguments]: Remove Makefile modification.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 5748fe5fcc
gnu: discrover: Fetch from git.
* gnu/packages/bioinformatics.scm (discrover)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 4348a059e5
gnu: Add texlive-latex-examplep.
* gnu/packages/tex.scm (texlive-latex-examplep): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus f50f343e0d
gnu: Add texlive-latex-verbatimbox.
* gnu/packages/tex.scm (texlive-latex-verbatimbox): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 1d0669f4b4
gnu: Add texlive-latex-readarray.
* gnu/packages/tex.scm (texlive-latex-readarray): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 893fbf1285
gnu: Add texlive-generic-listofitems.
* gnu/packages/tex.scm (texlive-generic-listofitems): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 49b2e86adf
gnu: Add texlive-latex-doi.
* gnu/packages/tex.scm (texlive-latex-doi): New variable.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 1c06399358
gnu: diamond: Fetch from git.
* gnu/packages/bioinformatics.scm (diamond)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 7a1e62ca67
gnu: delly: Update to 0.7.9.
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 4d494a4fa3
gnu: deeptools: Update to 3.1.3.
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus e6b65bd219
gnu: eolie: Update to 0.9.45.
* gnu/packages/gnome.scm (eolie): Update to 0.9.45.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 42643fc24d
gnu: python-dendropy: Fetch from git.
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Fetch from git.
2018-10-21 23:06:46 +02:00
Ricardo Wurmus 6b31040ae6
gnu: python-py2bit: Update to 0.3.0.
* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.0.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 6b7260bad1
gnu: cutadapt: Update to 1.18.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.18.
[inputs]: Add python-dnaio.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus a5b0038cbd
gnu: Add python-dnaio.
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 7321920cd3
gnu: crossmap: Update to 0.2.9.
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 8640f9ec91
gnu: python-twobitreader: Update to 3.1.6.
* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.6.
[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus f5cec0068a
gnu: Add python-bx-python.
* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 2ba2d62c69
gnu: python2-bx-python: Update to 0.8.2.
* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 1d18ee6dfd
gnu: bwa-pssm: Fetch from git.
* gnu/packages/bioinformatics.scm (bwa-pssm)[source]: Fetch from git.
2018-10-21 23:06:45 +02:00
Ricardo Wurmus 9a6808e0c0
gnu: tophat: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-10-21 23:06:45 +02:00
Mark H Weaver f7618bf18e
gnu: linux-libre: Update to 4.18.16.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.16.
(%linux-libre-hash): Update hash.
2018-10-21 14:59:30 -04:00
Mark H Weaver 668834cae0
gnu: linux-libre@4.14: Update to 4.14.78.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.78.
(%linux-libre-4.14-hash): Update hash.
2018-10-21 14:58:03 -04:00
Mark H Weaver c4a7a51292
gnu: linux-libre@4.9: Update to 4.9.135.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.135.
2018-10-21 14:57:24 -04:00
Mark H Weaver 9ab6c680ba
gnu: linux-libre@4.4: Update to 4.4.162.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.162.
2018-10-21 14:56:44 -04:00
Pierre Neidhardt 673364cd3a
gnu: Add emacs-slime-repl-ansi-color.
* gnu/packages/emacs.scm (emacs-slime-repl-ansi-color): New variable.
2018-10-21 19:49:10 +02:00
Marius Bakke 3a69b59332
gnu: rng-tools: Update to 6.6.
* gnu/packages/linux.scm (rng-tools): Update to 6.6.
2018-10-21 17:57:01 +02:00
Marius Bakke 9b6dc31b6d
gnu: fluidsynth: Update to 2.0.1.
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.1.
(fluidsynth-1): New public variable.
* gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1.
* gnu/packages/music.scm (lmms)[inputs]: Likewise.
2018-10-21 17:57:01 +02:00
Marius Bakke b6b3e5120a
gnu: libgxps: Update to 0.3.0.
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-10-21 17:57:01 +02:00
Marius Bakke c8d62d936e
gnu: libgxps: Propagate required inputs.
* gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ...
[propagated-inputs]: ... here.  New field.
2018-10-21 17:57:01 +02:00
Marius Bakke 920de4286a
gnu: re2: Update to 2018-10-01.
* gnu/packages/regex.scm (re2): Update to 2018-10-01.
2018-10-21 17:57:01 +02:00
Marius Bakke ab5e4be647
gnu: libgphoto2: Update to 2.5.19.
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
2018-10-21 17:57:01 +02:00
Marius Bakke 8941b4ab3d
gnu: appstream-glib: Update to 0.7.14.
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
2018-10-21 17:57:00 +02:00
Marius Bakke 8eadc55202
gnu: openal: Update to 1.19.1.
* gnu/packages/audio.scm (openal): Update to 1.19.1.
2018-10-21 17:57:00 +02:00
Efraim Flashner 2c17bd7b29
gnu: kodi: Disable version checker.
Fixes bug#32997.

* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove
the version checking configuration option.
2018-10-21 16:39:26 +03:00
Ben Woodcroft 617c478506
gnu: python2-dendropy: Disable failing test.
* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable
failing test.
2018-10-21 22:31:56 +10:00
Ricardo Wurmus 21c837405a
gnu: bowtie: Update to 2.3.4.3.
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.4.3.
[source]: Fetch from git.
[inputs]: Replace python-2 with python-wrapper; move perl, perl-clone,
perl-test-deep, and perl-test-simple from here...
[native-inputs]: ...to here.
[arguments]: Simplify check phase.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus f45093429c
gnu: blast+: Use INVOKE and return #T unconditionally.
* gnu/packages/bioinformatics.scm (blast+)[arguments]: Use INVOKE and
return #T unconditionally.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus f8b697a385
gnu: bedops: Update to 2.4.35.
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.35.
[source]: Fetch from git.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus 337d72fb44
gnu: bedops: Use INVOKE.
* gnu/packages/bioinformatics.scm (bedops)[arguments]: Use INVOKE.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus c793f4d8fb
gnu: bamm: Fetch from git and use INVOKE.
* gnu/packages/bioinformatics.scm (bamm)[source]: Fetch from git.
[arguments]: Use INVOKE and return #T unconditionally.
2018-10-20 23:37:34 +02:00
Ricardo Wurmus 95758e2faf
gnu: aragorn: Use invoke and simplify.
* gnu/packages/bioinformatics.scm (aragorn)[arguments]: Use INVOKE in build
phase; simplify install phase.
2018-10-20 23:37:33 +02:00
Ricardo Wurmus 8b4102b903
gnu: clipper: Update to 1.2.1.
* gnu/packages/bioinformatics.scm (clipper): Update to 1.2.1.
[source]: Fetch from git.
[arguments]: Add fix-typo phase.
2018-10-20 23:37:33 +02:00
Ricardo Wurmus 895cf8278a
gnu: python-pybedtools: Update to 0.7.10.
* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10.
[arguments]: Disable broken tests.
[propagated-inputs]: Replace bedtools with bedtools-2.26; add
python-matplotlib, python-pysam, and python-pyyaml.
[native-inputs]: Remove python-pyyaml; add kentutils, python-numpy,
python-pandas, and python-six.
(python-pybedtools): New variable.
2018-10-20 23:37:33 +02:00
Ricardo Wurmus 129363b762
gnu: Add bedtools-2.26.
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
2018-10-20 23:37:28 +02:00
Kei Kebreau bfa47f14b1
gnu: cataclysm-dda: Update snapshot.
* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
2018-10-20 14:38:45 -04:00
Kei Kebreau 82cbe4e046
gnu: maxima: Update to 5.42.0.
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
2018-10-20 14:38:45 -04:00
Oleg Pykhalov 227da3a4c5
gnu: python-glances: Update to 3.0.2.
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
2018-10-20 18:24:23 +03:00
Oleg Pykhalov 67fd64a490
gnu: emacs-hy-mode: Update to 1.0.3.
* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
2018-10-20 17:48:58 +03:00
Oleg Pykhalov e661dca879
gnu: emacs-erc-hl-nicks: Update to 1.3.3.
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
2018-10-20 17:48:49 +03:00
Oleg Pykhalov 91c5e6a69d
gnu: emacs-yasnippet: Update to 0.13.0.
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
2018-10-20 17:48:36 +03:00
Oleg Pykhalov 292d637b9e
gnu: emacs-nginx-mode: Update to 1.1.9.
* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
2018-10-20 17:48:28 +03:00
Oleg Pykhalov 2f1dacc281
gnu: emacs-rainbow-mode: Update to 1.0.1.
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
2018-10-20 17:48:07 +03:00
Oleg Pykhalov 45dcdf5349
gnu: emacs-smart-mode-line: Update to 2.12.0.
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
2018-10-20 17:47:46 +03:00
Oleg Pykhalov 9137596179
gnu: emacs-fill-column-indicator: Update to 1.89.
* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
2018-10-20 17:47:13 +03:00
Oleg Pykhalov 83246854f3
gnu: emacs-ggtags: Update to 0.8.13.
* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
2018-10-20 17:46:43 +03:00
Oleg Pykhalov 42f9ebdc77
gnu: emacs-which-key: Update to 3.3.0.
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
2018-10-20 17:37:32 +03:00
Christopher Baines 0d3f170864
gnu: Add soundconverter.
* gnu/packages/gnome.scm (soundconverter): New variable.
* gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-10-20 12:24:50 +01:00
nixo b5a927b3ba
gnu: Add enchive.
* gnu/packages/crypto.scm (enchive): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:41 +02:00
Meiyo Peng bc83b2e22f
gnu: Add i3blocks.
* gnu/packages/wm.scm (i3blocks): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 23:39:37 +02:00
Ricardo Wurmus cdb84eb0e6
gnu: qsynth: Update to 0.5.3.
* gnu/packages/audio.scm (qsynth): Update to 0.5.3.
2018-10-19 21:59:28 +02:00
Ludovic Courtès 0ee6692a63
gnu: sbcl-slime-swank: Remove reference to unbound variable.
Fixes a regression introduced in commit
c4d4ae1e16.

* gnu/packages/lisp.scm (sbcl-slime-swank)[license]: Remove extra 'license'.
2018-10-19 18:34:07 +02:00
Amirouche b1e6b93805
gnu: guile-wiredtiger: Update to 0.7.0.
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0.
[inputs]: Replace wiredtiger with wiredtiger-3
[propagated-inputs]: Remove guile-lib, add guile-bytestructures
[description]: Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Amirouche 4680fef705
gnu: Add wiredtiger 3.1.0
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from
  wiredtiger

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 18:28:57 +02:00
Pierre Neidhardt 3bd45f5c80
gnu: emacs-slime: License is a mix of GPL2+ and public domain.
* gnu/packages/emacs.scm (emacs-slime)[license]: Update to (gpl2+ public-domain)
2018-10-19 18:00:14 +02:00
Pierre Neidhardt e2e5004f6e
gnu: Add lparallel.
* gnu/packages/lisp.scm (cl-lparallel, ecl-lparallel, sbcl-lparallel): New variables.
2018-10-19 17:56:38 +02:00
Pierre Neidhardt 24fd7586a4
gnu: Add sbcl-cl-webkit.
* gnu/packages/lisp.scm (sbcl-cl-webkit): New variable.
2018-10-19 17:56:38 +02:00
Pierre Neidhardt c80dfee9f1
gnu: Add sbcl-cl-cffi-gtk.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19 17:56:38 +02:00
Pierre Neidhardt 7b5b8c4405
gnu: Add sbcl-cl-cffi-gtk-gdk.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt a3bdddc359
gnu: Add sbcl-cl-cffi-gtk-gdk-pixbuf.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk-pixbuf): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 9ecc457b52
gnu: Add sbcl-cl-cffi-gtk-pango.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-pango): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 7176fe7c32
gnu: Add sbcl-cl-cffi-gtk-cairo.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-cairo): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 867b3f4780
gnu: Add sbcl-cl-cffi-gtk-gio.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gio): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 77a5461c31
gnu: Add sbcl-cl-cffi-gtk-gobject.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gobject): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 64dcf7d99b
gnu: Add sbcl-cl-cffi-gtk-glib.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-glib): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt c88985d9b0
gnu: Add sbcl-cl-cffi-gtk.
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 85be9191ee
gnu: Add closer-mop.
* gnu/packages/lisp.scm (cl-closer-mop, ecl-closer-mop, sbcl-closer-mop): New variables.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 4aa2342008
gnu: Add trivial-garbage.
* gnu/packages/lisp.scm (cl-trivial-garbage, ecl-trivial-garbage, sbcl-trivial-garbage): New variables.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 2cc931db44
gnu: Add cl-unix-opts.
* gnu/packages/lisp.scm (cl-unix-opts, ecl-unix-opts, sbcl-unix-opts): New variables.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt dedbf37e5d
gnu: Add cl-json.
* gnu/packages/lisp.scm (cl-json, ecl-cl-json, sbcl-cl-json): New variables.
2018-10-19 17:56:37 +02:00
Pierre Neidhardt 4624d2e2b4
gnu: Add parenscript.
* gnu/packages/lisp.scm (cl-parenscript, ecl-parenscript, sbcl-parenscript): New variables.
2018-10-19 17:56:36 +02:00
Pierre Neidhardt 8f065b47c7
gnu: Add sbcl-cl-sqlite.
* gnu/packages/lisp.scm (sbcl-cl-sqlite): New variable.
2018-10-19 17:56:36 +02:00
Pierre Neidhardt 4112307268
gnu: Add sbcl-cffi.
* gnu/packages/lisp.scm (sbcl-cffi): New variable.
2018-10-19 17:56:36 +02:00
Pierre Neidhardt d3142f2ffb
gnu: Add sbcl-cffi-grovel.
* gnu/packages/lisp.scm (sbcl-cffi-grovel): New variable.
2018-10-19 17:56:36 +02:00
Pierre Neidhardt 9eea4e0302
gnu: Add sbcl-cffi-libffi.
* gnu/packages/lisp.scm (sbcl-cffi-libffi): New variable.
2018-10-19 17:56:36 +02:00
Pierre Neidhardt 99b3d203fb
gnu: Add sbcl-cffi-toolchain.
* gnu/packages/lisp.scm (sbcl-cffi-toolchain): New variable.
2018-10-19 17:56:35 +02:00
Pierre Neidhardt 5d9bf76235
gnu: Add sbcl-cffi-bootstrap.
* gnu/packages/lisp.scm (sbcl-cffi-bootstrap): New variable.
2018-10-19 17:56:06 +02:00
Pierre Neidhardt 92b1d09b68
gnu: Add queues.priority-cqueue.
* gnu/packages/lisp.scm (cl-queues.priority-cqueue, ecl-queues.priority-cqueue, sbcl-queues.priority-cqueue): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt 144085cd69
gnu: Add queues.priority-queue.
* gnu/packages/lisp.scm (cl-queues.priority-queue, ecl-queues.priority-queue, sbcl-queues.priority-queue): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt a889ba99c1
gnu: Add queues.simple-cqueue.
* gnu/packages/lisp.scm (cl-queues.simple-cqueue, ecl-queues.simple-cqueue, sbcl-queues.simple-cqueue): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt 6fef7c0ec8
gnu: Add queues.simple-queue.
* gnu/packages/lisp.scm (cl-queues.simple-queue, ecl-queues.simple-queue, sbcl-queues.simple-queue): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt eb766dfed0
gnu: Add queues.
* gnu/packages/lisp.scm (cl-queues, ecl-queues, sbcl-queues): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt 3f4c21c53e
gnu: Add puri.
* gnu/packages/lisp.scm (cl-puri, ecl-puri, sbcl-puri): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt 1de50cb73e
gnu: Add ptester.
* gnu/packages/lisp.scm (cl-ptester, ecl-ptester, sbcl-ptester): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt a28d00d999
gnu: Add simple-scanf.
* gnu/packages/lisp.scm (cl-simple-scanf, ecl-simple-scanf, sbcl-simple-scanf): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt 28b52970ba
gnu: Add parse-float.
* gnu/packages/lisp.scm (cl-parse-float, ecl-parse-float, sbcl-parse-float): New variables.
2018-10-19 17:54:13 +02:00
Pierre Neidhardt 41b3b866ce
gnu: Add proc-parse.
* gnu/packages/lisp.scm (cl-proc-parse, ecl-proc-parse, sbcl-proc-parse): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 86afb0a272
gnu: Add prove.
* gnu/packages/lisp.scm (cl-prove, ecl-prove, sbcl-prove): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 1a42bb80cb
gnu: Add prove-asdf.
* gnu/packages/lisp.scm (cl-prove-asdf, ecl-prove-asdf, sbcl-prove-asdf): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 68a7b929f3
gnu: Add cl-ansi-text.
* gnu/packages/lisp.scm (cl-ansi-text, ecl-cl-ansi-text, sbcl-cl-ansi-text): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 8caa928dd4
gnu: Add cl-colors.
* gnu/packages/lisp.scm (cl-colors, ecl-cl-colors, sbcl-cl-colors): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt d414223205
gnu: Add let-plus.
* gnu/packages/lisp.scm (cl-let-plus, ecl-let-plus, sbcl-let-plus): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 5b8a801d16
gnu: Add lift.
* gnu/packages/lisp.scm (cl-lift, ecl-lift, sbcl-lift): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 9f3000cc11
gnu: Add anaphora.
* gnu/packages/lisp.scm (cl-anaphora, ecl-anaphora, sbcl-anaphora): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 19a1c3be97
gnu: Add lisp-unit.
* gnu/packages/lisp.scm (cl-lisp-unit, ecl-lisp-unit, sbcl-lisp-unit): New variables.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt c4d4ae1e16
gnu: Add sbcl-slime-swank.
* gnu/packages/lisp.scm (sbcl-slime-swank): New variable.
2018-10-19 17:54:12 +02:00
Pierre Neidhardt 109ce303f4
gnu: Add cl-string-match.
* gnu/packages/lisp.scm (cl-string-match, ecl-cl-string-match, sbcl-cl-string-match): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt a927eb3653
gnu: Add ascii-strings.
* gnu/packages/lisp.scm (cl-ascii-strings, ecl-ascii-strings, sbcl-ascii-strings): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt 8d8d1c8d6c
gnu: Add mgl-pax.
* gnu/packages/lisp.scm (cl-mgl-pax, ecl-mgl-pax, sbcl-mgl-pax): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt f07efbf1e6
gnu: Add pythonic-string-reader.
* gnu/packages/lisp.scm (cl-pythonic-string-reader, ecl-pythonic-string-reader, sbcl-pythonic-string-reader): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt fb8c4bc6ba
gnu: Add named-readtables.
* gnu/packages/lisp.scm (cl-named-readtables, ecl-named-readtables, sbcl-named-readtables): New variables.

FIX named-readtables
2018-10-19 17:54:11 +02:00
Pierre Neidhardt e549ba0598
gnu: Add ironclad.
* gnu/packages/lisp.scm (cl-ironclad, ecl-ironclad, sbcl-ironclad): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt fbdd9b2c8b
gnu: Add nibbles.
* gnu/packages/lisp.scm (cl-nibbles, ecl-nibbles, sbcl-nibbles): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt 5800c538a1
gnu: Add rt.
* gnu/packages/lisp.scm (cl-rt, ecl-rt, sbcl-rt): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt 1855496813
gnu: Add cl-fad.
* gnu/packages/lisp.scm (cl-fad, ecl-cl-fad, sbcl-cl-fad): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt 1a3d39c446
gnu: Add 3bmd-ext-code-blocks.
* gnu/packages/lisp.scm (cl-3bmd-ext-code-blocks, ecl-3bmd-ext-code-blocks, sbcl-3bmd-ext-code-blocks): New variables.
2018-10-19 17:54:11 +02:00
Pierre Neidhardt ef0c3e1429
gnu: Add 3bmd.
* gnu/packages/lisp.scm (cl-3bmd, ecl-3bmd, sbcl-3bmd): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt b4ba1c0a38
gnu: Add colorize.
* gnu/packages/lisp.scm (cl-colorize, ecl-colorize, sbcl-colorize): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt 6a1761cbf6
gnu: Add html-encode.
* gnu/packages/lisp.scm (cl-html-encode, ecl-html-encode, sbcl-html-encode): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt 141001597d
gnu: Add split-sequence.
* gnu/packages/lisp.scm (cl-split-sequence, ecl-split-sequence, sbcl-split-sequence): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt bdf83297a8
gnu: Add esrap.
* gnu/packages/lisp.scm (cl-esrap, ecl-esrap, sbcl-esrap): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt 989cd79b5c
gnu: Add eos.
* gnu/packages/lisp.scm (cl-eos, ecl-eos, sbcl-eos): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt 8f41fa066e
gnu: Add jpl-queues.
* gnu/packages/lisp.scm (cl-jpl-queues, ecl-jpl-queues, sbcl-jpl-queues): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt 232e1abce7
gnu: Add jpl-util.
* gnu/packages/lisp.scm (cl-jpl-util, ecl-jpl-util, sbcl-jpl-util): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt ef091e9155
gnu: Add cl-yacc.
* gnu/packages/lisp.scm (cl-cl-yacc, ecl-cl-yacc, sbcl-cl-yacc): New variables.
2018-10-19 17:54:10 +02:00
Pierre Neidhardt 2d418bfa39
gnu: Add babel.
* gnu/packages/lisp.scm (cl-babel, ecl-babel, sbcl-babel): New variables.
2018-10-19 17:54:09 +02:00
Pierre Neidhardt 4ef9ddbdae
gnu: Add hu.dwim.stefil.
* gnu/packages/lisp.scm (cl-hu.dwim.stefil, ecl-hu.dwim.stefil, sbcl-hu.dwim.stefil): New variables.
2018-10-19 17:54:09 +02:00
Pierre Neidhardt 0cd6fb4970
gnu: Add hu.dwim.asdf.
* gnu/packages/lisp.scm (cl-hu.dwim.asdf, ecl-hu.dwim.asdf, sbcl-hu.dwim.asdf): New variables.
2018-10-19 17:54:09 +02:00
Pierre Neidhardt 8c661ff1ef
gnu: Add trivial-features.
* gnu/packages/lisp.scm (cl-trivial-features, ecl-trivial-features, sbcl-trivial-features): New variables.
2018-10-19 17:54:09 +02:00
Pierre Neidhardt 99c6124229
gnu: Add cl-strings.
* gnu/packages/lisp.scm (cl-strings, sbcl-cl-strings, ecl-cl-strings): New variables.
2018-10-19 17:25:40 +02:00
Pierre Neidhardt e7b2937d19
gnu: Add texlive-latex-koma-script.
* gnu/packages/tex.scm (texlive-latex-koma-script): New variable.
2018-10-19 15:17:55 +02:00
Pierre Neidhardt 17ef5f1ff9
gnu: Add texlive-latex-pgf.
* gnu/packages/tex.scm (texlive-latex-pgf): New variable.
2018-10-19 15:16:40 +02:00
Pierre Neidhardt 910d67fb95
gnu: Add texlive-generic-ulem.
* gnu/packages/tex.scm (texlive-generic-ulem): New variable.
2018-10-19 15:11:52 +02:00
Pierre Neidhardt 0e73c11bb2
gnu: Add texlive-latex-eukdate.
* gnu/packages/tex.scm (texlive-latex-eukdate): New variable.
2018-10-19 15:10:18 +02:00
Pierre Neidhardt 707babdde4
gnu: Add texlive-latex-needspace.
* gnu/packages/tex.scm (texlive-latex-needspace): New variable.
2018-10-19 15:10:02 +02:00
Pierre Neidhardt b718793e2a
gnu: Add texlive-latex-ms.
* gnu/packages/tex.scm (texlive-latex-ms): New variable.
2018-10-19 15:08:45 +02:00
Rutger Helling 0fd874ebd1
gnu: youtube-dl: Update to 2018.10.05.
* gnu/packages/video.scm (youtube-dl): Update to 2018.10.05.
2018-10-19 11:43:35 +02:00
Rutger Helling 7d1f21c69a
gnu: vulkan-headers: Update to 1.1.85.0.
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.85.0.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update hash.
2018-10-19 08:43:29 +02:00
Leo Famulari eed00f93e8
gnu: libssh: Update to 0.7.6 [fixes CVE-2018-10933].
* gnu/packages/ssh.scm (libssh): Update to 0.7.6.
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Adjust patch.
2018-10-18 23:08:45 -04:00
Mark H Weaver 75b2afd953
gnu: linux-libre: Update to 4.18.15.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.15.
(%linux-libre-hash): Update hash.
2018-10-18 22:53:00 -04:00
Mark H Weaver ef8e7e3298
gnu: linux-libre@4.14: Update to 4.14.77.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.77.
(%linux-libre-4.14-hash): Update hash.
2018-10-18 22:52:58 -04:00
Mark H Weaver 1e672a01be
gnu: linux-libre@4.9: Update to 4.9.134.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.134.
2018-10-18 22:52:56 -04:00
Marius Bakke 29f40ee547
gnu: libgit2: Update to 0.26.7.
* gnu/packages/version-control.scm (libgit2): Update to 0.26.7.
2018-10-19 03:18:57 +02:00
Marius Bakke 2c0a3ed1f9
gnu: tmux: Update to 2.8.
* gnu/packages/tmux.scm (tmux): Update to 2.8.
2018-10-19 03:18:57 +02:00
Marius Bakke a908ffd1ab
gnu: notmuch: Update to 0.28.
* gnu/packages/mail.scm (notmuch): Update to 0.28.
2018-10-19 03:18:57 +02:00
Mark H Weaver 402e60859d
gnu: linux-libre: Enable SHPC PCI Hotplug driver on ARM64.
Fixes <https://bugs.gnu.org/32840> on ARM64.

* gnu/packages/aux-files/linux-libre/4.18-arm64.conf: Add
CONFIG_HOTPLUG_PCI_SHPC=y.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19 00:11:42 +02:00
Ludovic Courtès d36cd88873
gnu: grub-efi: Fix an uninitialized variable issue.
* gnu/packages/patches/grub-check-error-efibootmgr.patch: Add hunk to
correct uninitialized variable.
2018-10-19 00:11:42 +02:00
Alex Vong 33428d1267
gnu: javacc: Bootstrap from javacc-4 instead of bootstrap binary.
* gnu/packages/java.scm (javacc)[source](snippet): Delete bootstrap binary.
[arguments]: Set 'bootstrap-jar' path.
[native-inputs]: Add 'javacc-4'.
2018-10-18 14:59:55 +02:00
Alex Vong 6662d65f96
gnu: javacc: Use snippet to delete bundled jars.
* gnu/packages/java.scm (javacc-4)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase and add 'delete-tests'
phase.
* gnu/packages/java.scm (javacc)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase.
2018-10-18 14:59:52 +02:00
Alex Vong 53fb0476ec
gnu: javacc: 'javacc' now inherits from 'javacc-4'.
* gnu/packages/java.scm (javacc, javacc-4): 'javacc' now inherits from
'javacc-4' instead of the opposite around.
2018-10-18 14:59:44 +02:00
Kei Kebreau b286e3b368
gnu: retux: Update to 1.3.6.
* gnu/packages/games.scm (retux): Update to 1.3.6.
2018-10-17 17:04:27 -04:00
Kei Kebreau 0592db2873
gnu: wesnoth: Update to 1.14.5.
* gnu/packages/games.scm (wesnoth): Update to 1.14.5.
2018-10-17 16:27:38 -04:00
Marius Bakke a55ebe2e3a
gnu: python2: Add upstream security fixes.
This addresses CVE-2018-{1060,1061,14647,1000802}.

* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
2018-10-17 20:34:37 +02:00
Marius Bakke 90aeaee861
gnu: python: Fix CVE-2018-14647.
* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
2018-10-17 20:34:37 +02:00
Efraim Flashner 1d43756107
gnu: strace: Check before enabling personalities.
* gnu/packages/linux.scm (strace)[arguments]: Add configure flag to
check for personality support.
2018-10-17 21:28:05 +03:00
Kei Kebreau 82402f76be
gnu: hyperrogue: Update to 10.4t.
* gnu/packages/games.scm (hyperrogue): Update to 10.4t.
[arguments]: Modify 'make-flags'. Modify 'configure' and 'install' phases.
2018-10-17 13:47:41 -04:00
Pierre Neidhardt 05f8943f04
gnu: emacs-helm-system-packages: Add recutils to inputs.
* gnu/packages/emacs.scm (emacs-helm-system-packages)[inputs]: Use recutils.
2018-10-17 10:37:35 +02:00
Efraim Flashner 15b283e712
gnu: streamlink: Update to 0.14.2.
* gnu/packages/video.scm (streamlink): Update to 0.14.2.
[source]: Download from pypi.
2018-10-17 11:24:18 +03:00
Maxim Cournoyer 24220e0f09
gnu: emacs-nodejs-repl: Update to 0.2.0.
* gnu/packages/emacs.scm (emacs-nodejs-repl): Update to 0.2.0.
2018-10-16 23:02:50 -04:00
Eric Bavier 6f1ce09d79
gnu: Add guix-minimal.
* gnu/packages/guile.scm (guile-2.0.13): New variable.
* gnu/packages/package-management.scm (guix)[arguments]: Adjust 'wrap-program'
phase to handle "missing" inputs.
(guix-minimal): New variable.
2018-10-16 17:09:15 -05:00
Eric Bavier c8e3651a82
gnu: guile2.0-guix: Fix build.
* gnu/packages/gnupg.scm (guile2.0-gcrypt): New variable.
* gnu/packages/guile.scm (guile2.0-sqlite3): New variable.
* gnu/packages/package-management.scm (guile2.0-guix)[propagated-inputs]: Use
them.
2018-10-16 17:09:15 -05:00
Leo Famulari 02d5ed4a27
gnu: GStreamer plugins: Update MP3 features for GStreamer 1.14.
GStreamer moved all MPEG-1 audio (mp1, mp2, and mp3) decoders and encoders to
the group of "good" plugins in GStreamer 1.14.0. See the 'NEWS' file for more
information.

* gnu/packages/gstreamer.scm (gst-plugins-ugly)[inputs]: Remove lame, mpg123,
and twolame.
(gst-plugins-bad): Remove mpg123.
(gst-plugins-good): Add lame, mpg123, and twolame.
2018-10-16 13:40:14 -04:00
Rutger Helling 2d4a753a7c
gnu: xpra: Update to 2.4.
* gnu/packages/xorg.scm (xpra): Update to 2.4.
2018-10-16 14:27:28 +02:00
Clément Lassieur f1376bfabe
gnu: emacs-exwm: Update to 0.20.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.20.
[source]: Remove emacs-exwm-fix-fullscreen-issue.patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: Remove patch.
2018-10-16 11:10:04 +02:00
Clément Lassieur 503fe87098
gnu: emacs-xelb: Update to 0.16.
* gnu/packages/emacs.scm (emacs-xelb): Update to 0.16.
2018-10-16 10:57:53 +02:00
Ludovic Courtès 532f92c8f3
gnu: guix: Update to f9a8fce.
* gnu/packages/package-management.scm (guix): Update to f9a8fce.
2018-10-15 23:54:20 +02:00
Efraim Flashner 2ab321ca37
gnu: go@1.4: Add support for aarch64-linux.
* gnu/packages/golang.scm (go@1.4)[arguments]: Build for armhf-linux
when building for aarch64-linux.
[supported-systems]: Add aarch64-linux.
2018-10-15 14:21:07 +03:00
Rutger Helling 2c89b4b550
gnu: wine-staging: Update to 3.18.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.18.
* gnu/packages/wine.scm (wine-staging): Update to 3.18.
2018-10-15 10:50:48 +02:00
Efraim Flashner b7028a16e6
gnu: x265: Fix building on armhf-linux and aarch64-linux.
* gnu/packages/video.scm (x265)[source]: Update list of patches.
[arguments]: Change configure flag to ensure PIC for all architectures.
* gnu/packages/patches/x265-arm-asm-primitives.patch: Remove file.
* gnu/packages/patches/x265-detect512-all-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update patch registry.
2018-10-15 11:40:34 +03:00
Tobias Geerinckx-Rice 2d5fa80e83
gnu: audacity: Update home page.
* gnu/packages/audio.scm (audacity)[home-page]: Update.
2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice e02013b7de
gnu: hexchat: Use HTTPS home page.
* gnu/packages/messaging.scm (hexchat)[home-page]: Use HTTPS.
2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice 4a147986a0
gnu: haveged: Teach the controversy.
* gnu/packages/linux.scm (haveged)[description]: Suggest adding
additional entropy sources.
2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice dfe05297f3
gnu: x265: Update to 2.9.
* gnu/packages/video.scm (x265): Update to 2.9.
[source]: Remove x265-fix-ppc64le-build.patch.
* gnu/packages/patches/x265-fix-ppc64le-build.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 4702d45280
gnu: opensm: Update to 3.3.21.
* gnu/packages/fabric-management.scm (opensm): Update to 3.3.21.
[source]: Update tarball URI.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Rename 'doc' phase to 'install-doc'.
Omit AUTHORS and ChangeLog files. They are more than a decade old.
2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 9cac043cc0
gnu: restic: Update to 0.9.3.
* gnu/packages/backup.scm (restic): Update to 0.9.3.
[arguments]: Disable 'restic self-update'.
2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 3a6e1fe8c8
gnu: perl-xml-feed: Update to 0.55.
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.55.
2018-10-15 06:19:36 +02:00
Maxim Cournoyer 66a9f08bb9
gnu: Add python-falcon-cors.
* gnu/packages/python-web.scm (python-falcon-cors): New variable.
2018-10-14 22:50:27 -04:00