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Author SHA1 Message Date
José Miguel Sánchez García e46bf22391
gnu: python-xcffib: Fix libxcb.so.1 path. 
* gnu/packages/python.scm (python-xcffib)[arguments]<#:phases>: Add phase to
embed full path to libxcb.so.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-26 20:30:32 +02:00
Jan Nieuwenhuizen 7a0efa77a4
gnu: Add emacs-disable-mouse. 
* gnu/packages/emacs.scm (emacs-disable-mouse): New variable.
 2017-05-26 15:13:04 +02:00
Danny Milosavljevic 013e1e853b
gnu: Add python-flask-migrate. 
* gnu/packages/python.scm (python-flask-migrate,
python2-flask-migrate): New variables.
 2017-05-26 11:59:49 +02:00
Danny Milosavljevic 75baf3193c
gnu: Add python-flask-script. 
* gnu/packages/python.scm (python-flask-script,
python2-flask-script): New variables.
 2017-05-26 11:59:39 +02:00
Mark H Weaver e0775d2a01
gnu: Fix another call to cross-gcc. 
This is a followup to commit 7b3318e34f.

* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc)
[native-inputs]: Fix 'cross-gcc' call.
* gnu/packages/cross-base.scm: Fix example 'cross-gcc' call in a comment.
 2017-05-26 04:05:21 -04:00
Stefan Reichoer 37a5719642
gnu: Add multitail. 
* gnu/packages/logging.scm (multitail): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-26 00:05:20 +02:00
Stefan Reichoer ca0e62bfe2
gnu: Add python-ansi2html. 
* gnu/packages/python.scm (python-ansi2html, python2-ansi2html): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-25 23:27:31 +02:00
Leo Famulari 09c36743fa
gnu: Add python-asn1crypto. 
* gnu/packages/crypto.scm (python-asn1crypto, python2-asn1crypto): New variables.
 2017-05-25 15:39:36 -04:00
Clément Lassieur 1113386beb
gnu: Add cpuid. 
* gnu/packages/linux.scm (cpuid): New variable.
 2017-05-25 21:38:20 +02:00
Leo Famulari fc3a041674
gnu: openssl@1.1.0: Update to 1.1.0f. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0f.
 2017-05-25 14:43:31 -04:00
Marius Bakke e3d59877e0
gnu: kodi: Update to 18.0_alpha-5-1a38948. 
* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-5-1a38948.
 2017-05-25 20:20:04 +02:00
ng0 103b7e7955
gnu: Add kbd-neo. 
* gnu/packages/linux.scm (kbd-neo): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-25 20:15:39 +02:00
ng0 fd7000fe33
gnu: kbd: Add 'native-search-paths'. 
* gnu/packages/linux.scm (kbd)[native-search-paths]: Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-25 20:05:11 +02:00
Marius Bakke 2af3743bc2
gnu: strace: Update to 4.17. 
* gnu/packages/linux.scm (strace): Update to 4.17.
 2017-05-25 20:04:32 +02:00
Marius Bakke acc417ca36
gnu: slop: Update to 6.3.38. 
* gnu/packages/xdisorg.scm (slop): Update to 6.3.38.
 2017-05-25 20:04:32 +02:00
Arun Isaac 87c95cb242
gnu: emacs-exwm: Fix 'line too long' lint warning. 
* gnu/packages/emacs.scm (emacs-exwm): Split line to fix 'line too long' lint
  warning.
 2017-05-25 23:31:25 +05:30
Jan Nieuwenhuizen c10d887dd9
gnu: emacs-exwm: Update to 0.14. 
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.14.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-05-25 23:26:47 +05:30
Marius Bakke 60793e3732
gnu: webkitgtk: Update to 2.16.3 [fixes CVE-2017-{2496,2510,2539}]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.3.
 2017-05-25 18:04:13 +02:00
Julien Lepiller 2f4c2df12e
gnu: Add ocaml-ppx-jane. 
* gnu/packages/ocaml.scm (ocaml-ppx-jane): New variable.
 2017-05-25 14:48:15 +02:00
Julien Lepiller 5cd47fb05b
gnu: Add ocaml-ppx-expect. 
* gnu/packages/ocaml.scm (ocaml-ppx-expect): New variable.
 2017-05-25 14:48:01 +02:00
Julien Lepiller f27522d6db
gnu: Add ocaml-re. 
* gnu/packages/ocaml.scm (ocaml-re): New variable.
 2017-05-25 14:47:58 +02:00
Julien Lepiller 38cb1ec64b
gnu: Add ocaml-ppx-fields-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-fields-conv): New variable.
 2017-05-25 14:47:56 +02:00
Julien Lepiller 9b8bc95747
gnu: Add ocaml-ppx-sexp-message. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-message): New variable.
 2017-05-25 14:47:54 +02:00
Julien Lepiller c64fecc20b
gnu: Add ocaml-ppx-custom-printf. 
* gnu/packages/ocaml.scm (ocaml-ppx-custom-printf): New variable.
 2017-05-25 14:47:52 +02:00
Julien Lepiller 7ea5acc668
gnu: Add ocaml-ppx-fail. 
* gnu/packages/ocaml.scm (ocaml-ppx-fail): New variable.
 2017-05-25 14:47:50 +02:00
Julien Lepiller 5d6d7ab0cf
gnu: Add ocaml-ppx-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-ppx-bin-prot): New variable.
 2017-05-25 14:47:48 +02:00
Julien Lepiller 3674d7df2f
gnu: Add ocaml-ppx-pipebang. 
* gnu/packages/ocaml.scm (ocaml-ppx-pipebang): New variable.
 2017-05-25 14:47:45 +02:00
Julien Lepiller 25941ca13b
gnu: Add ocaml-ppx-sexp-value. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-value): New variable.
 2017-05-25 14:47:22 +02:00
Danny Milosavljevic faa6bdf8ad
gnu: sunxi-tools: Build armhf target tools. 
* gnu/packages/admin.scm (sunxi-tools)
[native-inputs]: Add cross-gcc, cross-libc.
[arguments]: Add "set-environment-up" phase.
Replace "build" phase.
Add "build-armhf" phase.
Update make-flags.
 2017-05-25 11:37:29 +02:00
Danny Milosavljevic d169326908
gnu: Add python-behave-web-api. 
Fixes <http://bugs.gnu.org/26906>.

* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api):
New variables.
 2017-05-25 11:37:29 +02:00
Danny Milosavljevic 8ed1288938
gnu: Enable python-parse-type tests. 
Fixes <http://bugs.gnu.org/26900>.

* gnu/packages/python.scm (python-parse-type)[arguments]: Enable tests.
Add phase "patch-tests".
[native-inputs]: Add python-pytest, python-pytest-runner.
[properties]: Add python2-variant.
(python2-parse-type): New variable.
 2017-05-25 11:37:26 +02:00
Ricardo Wurmus 77c729baf2
gnu: warzone2100: Use modular Qt. 
* gnu/packages/games.scm (warzone2100)[inputs]: Remove qt, add qtbase and
qtscript.
[arguments]: Add build phase "patch-for-qt5.8".
 2017-05-25 10:47:39 +02:00
Ricardo Wurmus 864cc7ef56
gnu: tiled: Use modular Qt. 
* gnu/packages/game-development.scm (tiled)[inputs]: Remove qt; add qtbase and
qtsvg.
[native-inputs]: Add qttools.
[arguments]: Override LRELEASE in translations.pro.
 2017-05-25 10:22:26 +02:00
Ricardo Wurmus 5c7d62242a
gnu: cmst: Use modular Qt. 
* gnu/packages/connman.scm (cmst)[inputs]: Remove qt; add qtbase.
[native-inputs]: Remove qt; add qttools.
 2017-05-25 10:22:26 +02:00
Ricardo Wurmus dd13aa90d6
gnu: vlc: Update to 2.2.6. 
* gnu/packages/video.scm (vlc): Update to 2.2.6.
 2017-05-25 09:26:23 +02:00
Ricardo Wurmus 2eb676819f
gnu: qtox: Update to 1.10.1. 
* gnu/packages/messaging.scm (qtox): Update to 1.10.1.
[inputs]: Remove libtoxcore and qt; add c-toxcore, qtbase, and qtsvg.
[native-inputs]: Remove qt; add qttools.
[build-system]: Change to cmake-build-system.
[arguments]: Remove configure phase replacement.
 2017-05-25 08:48:44 +02:00
Roel Janssen 9619a95ed8
gnu: Add emacs-rainbow-mode. 
* gnu/packages/emacs.scm (emacs-rainbow-mode): New variable.
 2017-05-25 00:55:22 +02:00
Tobias Geerinckx-Rice 631ced1b5b
gnu: libconfuse: Update to 3.1. 
* gnu/packages/wm.scm (libconfuse): Update to 3.1.
[source, home-page]: Change to new home page.
 2017-05-24 23:52:05 +02:00
Tobias Geerinckx-Rice 8675ae15b7
gnu: mcelog: Update to 151. 
* gnu/packages/linux.scm (mcelog): Update to 151.
 2017-05-24 23:52:04 +02:00
Ricardo Wurmus 8ea169d074
gnu: arm-none-eabi-toolchain: Include libstdc++. 
* gnu/packages/embedded.scm (arm-none-eabi-toolchain)[propagated-inputs]: Add
libstdc++.
 2017-05-24 23:29:51 +02:00
Ricardo Wurmus 9cdf48728e
gnu: arm-none-eabi-toolchain: Provide union of all inputs at the output. 
* gnu/packages/embedded.scm (arm-none-eabi-toolchain)[arguments]: Make the
union of all inputs available at the output.
 2017-05-24 23:29:44 +02:00
Ricardo Wurmus 1a1e83366d
gnu: Add libstdc++-arm-none-eabi. 
* gnu/packages/embedded.scm (make-libstdc++-arm-none-eabi): New procedure.
 2017-05-24 23:29:41 +02:00
Ricardo Wurmus 6a34e2ae28
gnu: avr-gcc-4.9: Use gcc-4.9 as base compiler. 
* gnu/packages/avr.scm (avr-gcc-4.9): Pass gcc-4.9 to "cross-gcc".
 2017-05-24 23:29:35 +02:00
Ricardo Wurmus 7b3318e34f
gnu: Allow overriding of xgcc package in cross-gcc. 
* gnu/packages/cross-base.scm (cross-gcc-arguments): Take extra "xgcc"
argument.
(cross-gcc): Use keyword arguments; take optional "xgcc" argument.
* gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9, propeller-gcc, gcc-vc4):
Use keyword arguments.
* gnu/packages/avr.scm (avr-gcc-4.9): Likewise.
 2017-05-24 23:29:20 +02:00
Ricardo Wurmus 9b91fb32f8
gnu: brdf-explorer: Update to 1.0.0-1.5b2cd46f3. 
* gnu/packages/graphics.scm (brdf-explorer): Update to 1.0.0-1.5b2cd46f3.
[source]: Use git-fetch method.
[arguments]: Adjust configure phase.
[native-inputs]: Replace qt with qttools.
[inputs]: Replace qt with qtbase.
 2017-05-24 23:25:49 +02:00
Leo Famulari ff51a87cae
gnu: libtasn1: Fix CVE-2017-6891. 
* gnu/packages/patches/libtasn1-CVE-2017-6891.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1)[replacement]: New field.
(libtasn1/fixed): New variable.
 2017-05-24 16:57:40 -04:00
Tobias Geerinckx-Rice 4ed390a0e7
gnu: sane-backends-minimal: Run most tests. 
* gnu/packages/scanner.scm (sane-backends-minimal)[arguments]: Add a
‘disable-failing-tests’ phase to do just that, and run the rest.
 2017-05-24 22:54:39 +02:00
Tobias Geerinckx-Rice 4febd4b0f4
gnu: sane-backends-minimal, sane-backends: Update to 1.0.27. 
* gnu/packages/scanner.scm (sane-backends-minimal): Update to 1.0.27.
[source]: Use (what should be) a more stable download URI.
 2017-05-24 22:54:39 +02:00
Ricardo Wurmus 9f64f7e631
gnu: suil: Use qtbase instead of qt-4. 
* gnu/packages/audio.scm (suil)[inputs]: Replace qt-4 with qtbase.
[arguments]: Add configure flags that are needed for qtbase.
 2017-05-24 22:48:35 +02:00
Ricardo Wurmus 523544d3d1
gnu: qtractor: Use modular Qt. 
* gnu/packages/music.scm (qtractor)[inputs]: Remove qt, add qtbase and
qtx11extras.
[native-inputs]: Add qttools.
 2017-05-24 22:48:34 +02:00
Ricardo Wurmus 09a1a6e111
gnu: qtractor: Update to 0.8.2. 
* gnu/packages/music.scm (qtractor): Update to 0.8.2.
 2017-05-24 22:48:34 +02:00
Leo Famulari 5e0ddfba7c
gnu: python-pyasn1: Update to 0.2.3. 
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.2.3.
 2017-05-24 16:35:54 -04:00
Leo Famulari 37c04f9184
gnu: python-idna: Update to 2.5. 
* gnu/packages/python.scm (python-idna, python2-idna): Update to 2.5.
[source]: Use pypi-uri.
 2017-05-24 16:35:53 -04:00
Leo Famulari ff7da7e04d
gnu: asn1c: Update to 0.9.28. 
* gnu/packages/tls.scm (asn1c): Update to 0.9.28.
 2017-05-24 16:35:49 -04:00
Marius Bakke 0b7b8fb045
gnu: gnome-themes-standard: Update to 3.22.3. 
* gnu/packages/gnome.scm (gnome-themes-standard): Update to 3.22.3.
 2017-05-24 21:35:19 +02:00
Marius Bakke 8773600542
gnu: clutter-gst: Update to 3.0.24. 
* gnu/packages/gnome.scm (clutter-gst): Update to 3.0.24.
 2017-05-24 21:35:19 +02:00
Marius Bakke 6a88e4ee64
gnu: clutter: Update to 1.26.2. 
* gnu/packages/gnome.scm (clutter): Update to 1.26.2.
 2017-05-24 21:35:19 +02:00
Marius Bakke 356f0cef4b
gnu: libchamplain: Update to 0.12.15. 
* gnu/packages/gnome.scm (libchamplain): Update to 0.12.15.
 2017-05-24 21:35:18 +02:00
Marius Bakke afd8e16b15
gnu: libgee: Update to 0.20.0. 
* gnu/packages/gnome.scm (libgee): Update to 0.20.0.
 2017-05-24 21:35:18 +02:00
Marius Bakke 6206db897b
gnu: libgtop: Update to 2.36.0. 
* gnu/packages/gnome.scm (libgtop): Update to 2.36.0.
 2017-05-24 20:40:12 +02:00
Marius Bakke 0ef48cd99e
gnu: tracker: Update to 1.12.0. 
* gnu/packages/gnome.scm (tracker): Update to 1.12.0.
[inputs]: Add JSON-GLIB and LIBSOUP.
 2017-05-24 20:37:57 +02:00
Marius Bakke 4063a40a4b
gnu: gnome-autoar: Update to 0.2.2. 
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.2.2.
 2017-05-24 20:29:15 +02:00
Marius Bakke 47b93ae5bf
gnu: libgnomekbd: Update to 3.22.0.1. 
* gnu/packages/gnome.scm (libgnomekbd): Update to 3.22.0.1.
 2017-05-24 20:25:43 +02:00
Marius Bakke 3c74a74ea2
gnu: glog: Update to 0.3.5. 
* gnu/packages/logging.scm (glog): Update to 0.3.5.
[source]: Switch to tarball download.
 2017-05-24 17:45:18 +02:00
Marius Bakke 2133f19378
gnu: maim: Update to 5.4.62. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.62.
 2017-05-24 17:45:17 +02:00
Marius Bakke 460e72c7b7
gnu: slop: Update to 5.3.38. 
* gnu/packages/xdisorg.scm (slop): Update to 5.3.38.
 2017-05-24 17:45:17 +02:00
Ricardo Wurmus c4ec1ae010
gnu: samba: Update to 4.6.4 [security fixes]. 
Fixes CVE-2017-7494.

* gnu/packages/samba.scm (samba): Update to 4.6.4.
 2017-05-24 16:39:31 +02:00
José Miguel Sánchez García 80f78e8f6f
gnu: python-cairocffi: Update to 0.8.0. 
* gnu/packages/python.scm (python-cairocffi): Update to 0.8.0.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-05-24 15:12:31 +05:30
José Miguel Sánchez García 3015d4556f
gnu: python-cairocffi: Update source and home-page URIs. 
* gnu/packages/python.scm (python-cairocffi)[source]: Update URI.
[home-page]: Update URI.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-05-24 15:12:31 +05:30
nee ae54843433
gnu: Add crawl-tiles. 
* gnu/packages/games.scm (crawl-tiles): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-05-24 05:15:21 +05:30
Jelle Licht ea584538ac
gnu: node: Use unbundled dependencies. 
* gnu/packages/node.scm (node)[inputs]: Add c-ares and http-parser.
[arguments]: Add configure flags for using system libraries.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-23 18:27:35 +02:00
Jelle Licht 1fdb883082
gnu: node: Update to 7.10.0. 
* gnu/packages/node.scm (node): Update to 7.10.0.
(node)[arguments]: Disabled more tests.
* gnu/packages/patches/node-9077.patch: Delete incompatible patch file.
Recreate patch file from node pull request 9077.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-23 17:55:59 +02:00
Nicolas Goaziou a7a7186ce6
gnu: Add MuseScore. 
* gnu/packages/music.scm (musescore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-23 13:35:44 +02:00
Arun Isaac b1d32ec0e2
gnu: emacs-auctex: Add arguments to work with new `install' phase. 
* gnu/packages/emacs.scm (emacs-auctex)[arguments]: Add #:include and
  #:exclude arguments.
 2017-05-23 06:12:49 +05:30
Arun Isaac e8cefe1103
gnu: emacs-slime: Add arguments to work with new `install' phase. 
* gnu/packages/emacs.scm (emacs-slime)[arguments]: Add #:include and #:exclude
  arguments.
 2017-05-23 06:12:49 +05:30
Marius Bakke 0dc4a498a3
install: Add 'passwd' to installation image. 
* gnu/system/install.scm (installation-os): Add SHADOW in package list.
 2017-05-23 01:22:22 +02:00
Ben Woodcroft b608765a2c
gnu: diamond: Update to 0.9.1. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.1.
 2017-05-22 21:17:41 +01:00
Ricardo Wurmus 9117448e76
gnu: Remove GCJ. 
* gnu/packages/patches/gcj-arm-mode.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Delete it.
* gnu/packages/gcc.scm (javac.in, gcj, ecj-bootstrap): Remove variables.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus e441fc564b
gnu: ant: Implement in terms of ant/java8. 
* gnu/packages/java.scm (ant): Inherit from ant/java8.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus 8bbd040840
gnu: Add ant/java8. 
* gnu/packages/java.scm (ant/java8): New variable.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus 5c7952fbf4
gnu: ant: Move after bootstrap packages. 
* gnu/packages/java.scm (ant): Move package.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus e7a5d73ea9
gnu: ant: Delete bundled jars. 
* gnu/packages/java.scm (ant)[source]: Delete bundled jars in a snippet.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus fded0c69dd
gnu: ant: Inherit from ant-bootstrap. 
* gnu/packages/java.scm (ant)[build-system]
[home-page][synopsis][description][license]: Remove fields.
[arguments]: Adapt arguments of ant-bootstrap package.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus fc6e27271d
gnu: clojure: Move below bootstrap packages. 
* gnu/packages/java.scm (clojure): Move package.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 5490480c42
gnu: java-swt: Move below the bootstrap packages. 
* gnu/packages/java.scm (java-swt): Move the package.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus e2098e2d58
gnu: icedtea-7: Use icedtea-6 for bootstrapping. 
* gnu/packages/java.scm (icedtea-7)[source]: Remove Makefile.in patch to link
with GCJ libs.
[arguments]: Remove (ice-9 rdelim) module; adjust configure flags; do not add
GCJ headers to CPATH in build phase "set-additional-paths".
[native-inputs]: Remove gcj and ant; add icedtea-6 and ant-bootstrap.  Remove
autoconf and automake.
(icedtea-8)[native-inputs]: Delete "icedtea" from the inherited inputs, not
"gcj".
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 9841931668
gnu: Add icedtea-6. 
* gnu/packages/java.scm (icedtea-6): New variable.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 1bf56c7233
gnu: Add ecj-javac-on-jamvm-wrapper-final. 
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper-final): New variable.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus 8c6091e3a6
gnu: Add jamvm. 
* gnu/packages/java.scm (jamvm): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 72885a4c8f
gnu: Add classpath-devel. 
* gnu/packages/java.scm (classpath-devel): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 7292d69419
gnu: Add ecj-javac-on-jamvm-wrapper. 
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 04d7cae2c4
gnu: Add classpath-jamvm-wrappers. 
* gnu/packages/java.scm (classpath-jamvm-wrappers): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 5f4402c7a3
gnu: Add jamvm-bootstrap. 
* gnu/packages/java.scm (jamvm-bootstrap): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus d3551e861e
gnu: Add classpath. 
* gnu/packages/java.scm (classpath): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus 6a5829d995
gnu: Add ecj-javac-wrapper. 
* gnu/packages/java.scm (ecj-javac-wrapper): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 5461721fa0
gnu: Add ecj-bootstrap. 
* gnu/packages/java.scm (ecj-bootstrap): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 5783bd7730
gnu: Add ant-bootstrap. 
* gnu/packages/java.scm (ant-bootstrap): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 57f6c50db1
gnu: Add sablevm. 
* gnu/packages/java.scm (sablevm): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus 2551fee8a0
gnu: Add sablevm-classpath. 
* gnu/packages/java.scm (sablevm-classpath): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus e1ae3587d2
gnu: Add jikes. 
* gnu/packages/java.scm (jikes): New variable.
 2017-05-22 18:55:34 +02:00
Ricardo Wurmus 296b3c631c
gnu: Add r-edaseq. 
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
 2017-05-22 18:54:59 +02:00
Ricardo Wurmus 7b46532779
gnu: Add r-deseq. 
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
 2017-05-22 18:54:59 +02:00
Ricardo Wurmus d4b83651d1
gnu: Add r-aroma-light. 
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
 2017-05-22 18:54:58 +02:00
Marius Bakke fd3782d13b
Merge branch 'version-0.13.0' 2017-05-22 18:25:01 +02:00
Marius Bakke 52d2a2be1f
gnu: vte-ng: Update to 0.48.3.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a.
 2017-05-22 15:28:59 +02:00
Marius Bakke b7c0c756da
gnu: gexiv2: Update to 0.10.6. 
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6.
 2017-05-22 15:17:12 +02:00
Marius Bakke 123e816816
gnu: dconf-editor: Update to 3.22.3. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3.
 2017-05-22 15:17:08 +02:00
Marius Bakke e6a36cf2f3
gnu: aisleriot: Update to 3.22.2. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2.
 2017-05-22 15:17:01 +02:00
Marius Bakke f2da7c861b
gnu: vte: Update to 0.48.3. 
* gnu/packages/gnome.scm (vte): Update to 0.48.3.
 2017-05-22 15:16:40 +02:00
Ben Woodcroft 74297231be
gnu: fraggenescan: Update to 1.30. 
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure.  Add new test
case.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft 7569613076
gnu: roary: Update to 3.8.2. 
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft 3cbfc149c3
gnu: taxtastic: Update to 0.6.4. 
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
 2017-05-22 11:44:19 +01:00
Roel Janssen b458413721
gnu: r-mutationalpatterns: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
 2017-05-22 09:44:08 +02:00
Mathieu Othacehe 65efb3c031
bootloader: extlinux: Add a warning message on top of generated conf file. 
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Warn users about
  the fact that the configuration file is automatically generated.
 2017-05-21 18:56:03 +02:00
Marius Bakke f1d1ef71ea
gnu: v4l-utils: Update to 1.12.5. 
* gnu/packages/video.scm (v4l-utils): Update to 1.12.5.
 2017-05-21 17:12:48 +02:00
Marius Bakke cfa7473c2b
gnu: x265: Update to 2.4. 
* gnu/packages/video.scm (x265): Update to 2.4.
 2017-05-21 17:12:48 +02:00
Marius Bakke 3bc45ad460
gnu: vlc: Update to 2.2.5.1. 
* gnu/packages/video.scm (vlc): Update to 2.2.5.1.
[source]: Remove obsolete snippet.
 2017-05-21 17:12:48 +02:00
Marius Bakke ba58886a8c
gnu: libaacs: Update to 0.9.0. 
* gnu/packages/video.scm (libaacs): Update to 0.9.0.
 2017-05-21 17:12:48 +02:00
Ben Woodcroft ef81341f0e
gnu: diamond: Update to 0.9.0. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0.
[license]: Change to AGPL3+.
 2017-05-21 16:08:03 +01:00
Ludovic Courtès e9c53359e7
gnu: guix: Update to a6d728b. 2017-05-21 16:59:04 +02:00
Ludovic Courtès a6d728b7aa
gnu: guix: Update to 0.13.0. 2017-05-21 16:58:53 +02:00
Ben Woodcroft 88682c9a72
gnu: fasttree: Update to 2.1.10. 
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
 2017-05-21 15:42:08 +01:00
Ben Woodcroft abc08cbae6
gnu: python-biom-format: Update to 2.1.6. 
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
 2017-05-21 15:42:08 +01:00
Ben Woodcroft c522f57e22
gnu: python-future: Update to 0.16.0. 
* gnu/packages/python.scm (python-future): Update to 0.16.0.
 2017-05-21 15:42:08 +01:00
Marius Bakke 1d0aa4d8c2
gnu: ccid: Update to 1.4.27. 
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
 2017-05-21 16:37:54 +02:00
Marius Bakke 20d2e1faa9
gnu: fio: Update to 2.20. 
* gnu/packages/benchmark.scm (fio): Update to 2.20.
[arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
 2017-05-21 16:33:42 +02:00
Marius Bakke 31044e6ff2
gnu: nano: Update to 2.8.4. 
* gnu/packages/nano.scm (nano): Update to 2.8.4.
 2017-05-21 16:17:01 +02:00
Marius Bakke 18f61e002b
gnu: vim: Update to 8.0.0600. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
 2017-05-21 14:34:45 +02:00
Marius Bakke 8b1ff6f0ab
gnu: vim-full: Disable failing test. 
* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
 2017-05-21 14:34:45 +02:00
Ludovic Courtès 9d0c24d1be
tests: ssh: Use 'guile2.0-ssh'. 
Fixes a regression introduced in 4d8806c3d6.

* gnu/tests/ssh.scm (run-ssh-test): Use GUILE2.0-SSH instead of GUILE-SSH.
 2017-05-21 11:56:29 +02:00
Mark H Weaver 718448e176
gnu: linux-libre: Update to 4.11.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2.
(%linux-libre-hash): Update hash.
 2017-05-21 02:03:32 -04:00
Mark H Weaver a08691dfbb
gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations. 
This removes support for the "shared memory communications over RDMA" (SMC-R)
networking protocol, which was added in 4.11 without the knowledge of the RDMA
maintainers, and which is thought to contain significant security flaws.  For
details, see <https://lwn.net/Articles/723081> and
<https://lwn.net/Articles/723070>.

* gnu/packages/aux-files/linux-libre/4.11-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC.

723#	0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
 2017-05-21 01:47:09 -04:00
Mark H Weaver 519fd6c367
gnu: linux-libre@4.9: Update to 4.9.29. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
 2017-05-21 01:45:21 -04:00
Mark H Weaver ec8d69ebfe
gnu: linux-libre@4.4: Update to 4.4.69. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
 2017-05-21 01:44:25 -04:00
Ludovic Courtès 324499184a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable. 
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
 2017-05-21 01:17:11 +02:00
Marius Bakke a588e34e0d
vm: Increase default disk size to account for ESP partition. 
Fixes a test regression introduced by ecf5d53769.

* gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
 2017-05-21 01:17:08 +02:00
Ludovic Courtès 9f8d6eb24a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable. 
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
 2017-05-21 01:14:51 +02:00
Marius Bakke 9a1bfe7648
vm: Increase default disk size to account for ESP partition. 
Fixes a test regression introduced by ecf5d53769.

* gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
 2017-05-21 01:07:12 +02:00
Leo Famulari fda33e495b
gnu: ghostscript: Add TODO comment about bundled jbig2dec. 
* gnu/packages/ghostscript.scm (ghostscript): Add comment.
 2017-05-20 16:26:29 -04:00
Leo Famulari 10cb88f85c
gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}. 
* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jbig2dec)[source]: Use them.
 2017-05-20 16:26:29 -04:00
Marius Bakke fefd4c197f
gnu: pcsc-lite: Update to 1.8.21. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
 2017-05-20 21:42:58 +02:00
Leo Famulari 12eecbf0bb
gnu: icedtea@3: Add aarch32-drop. 
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
 2017-05-20 14:57:22 -04:00
Leo Famulari db531f734a
gnu: icedtea@3: Update to 3.4.0 [security fixes]. 
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
 2017-05-20 14:57:22 -04:00
Leo Famulari b17bd261b0
gnu: imagemagick: Update to 6.9.8-6. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
 2017-05-20 14:06:20 -04:00
Ludovic Courtès 82ce81ba06
gnu: guix: Add 'guile2.0-guix'. 
* gnu/packages/package-management.scm (guile2.0-guix): New variable.
 2017-05-20 20:00:53 +02:00
Ludovic Courtès 74460d1121
gnu: libssh, guile-ssh: Add a "debug" output. 
* gnu/packages/ssh.scm (libssh)[outputs]: New field.
(guile-ssh)[outputs]: New field.
 2017-05-20 19:49:36 +02:00
Leo Famulari 7dccad95b6
gnu: icedtea@2: Update to 2.6.10 [security fixes]. 
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
 2017-05-20 14:39:50 +02:00
Leo Famulari 6a9defd747
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}]. 
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
 2017-05-20 14:39:50 +02:00
Ludovic Courtès 429046e9dd
system: Use Guile 2.2 rather than 2.0 in %BASE-PACKAGES. 
* gnu/system.scm (%base-packages): Change GUILE-2.0 to GUILE-2.2.
 2017-05-20 14:39:49 +02:00
Marius Bakke 6520904b3e
vm: Add UEFI loader to disk images. 
* gnu/build/vm.scm (install-efi): New procedure.
(initialize-hard-disk): Generate EFI blob when ESP is present.
* gnu/system/vm.scm (qemu-image): Append 40MiB EFI System Partition.

(cherry picked from commit ecf5d53769)
 2017-05-20 10:57:00 +02:00