Commit Graph

16904 Commits

Author SHA1 Message Date
Ricardo Wurmus 296b3c631c
gnu: Add r-edaseq.
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
2017-05-22 18:54:59 +02:00
Ricardo Wurmus 7b46532779
gnu: Add r-deseq.
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
2017-05-22 18:54:59 +02:00
Ricardo Wurmus d4b83651d1
gnu: Add r-aroma-light.
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
2017-05-22 18:54:58 +02:00
Marius Bakke fd3782d13b
Merge branch 'version-0.13.0' 2017-05-22 18:25:01 +02:00
Marius Bakke 52d2a2be1f
gnu: vte-ng: Update to 0.48.3.a.
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a.
2017-05-22 15:28:59 +02:00
Marius Bakke b7c0c756da
gnu: gexiv2: Update to 0.10.6.
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6.
2017-05-22 15:17:12 +02:00
Marius Bakke 123e816816
gnu: dconf-editor: Update to 3.22.3.
* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3.
2017-05-22 15:17:08 +02:00
Marius Bakke e6a36cf2f3
gnu: aisleriot: Update to 3.22.2.
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2.
2017-05-22 15:17:01 +02:00
Marius Bakke f2da7c861b
gnu: vte: Update to 0.48.3.
* gnu/packages/gnome.scm (vte): Update to 0.48.3.
2017-05-22 15:16:40 +02:00
Ben Woodcroft 74297231be
gnu: fraggenescan: Update to 1.30.
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure.  Add new test
case.
2017-05-22 11:44:20 +01:00
Ben Woodcroft 7569613076
gnu: roary: Update to 3.8.2.
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
2017-05-22 11:44:20 +01:00
Ben Woodcroft 3cbfc149c3
gnu: taxtastic: Update to 0.6.4.
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
2017-05-22 11:44:19 +01:00
Roel Janssen b458413721
gnu: r-mutationalpatterns: Update to 1.2.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
2017-05-22 09:44:08 +02:00
Mathieu Othacehe 65efb3c031
bootloader: extlinux: Add a warning message on top of generated conf file.
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Warn users about
  the fact that the configuration file is automatically generated.
2017-05-21 18:56:03 +02:00
Marius Bakke f1d1ef71ea
gnu: v4l-utils: Update to 1.12.5.
* gnu/packages/video.scm (v4l-utils): Update to 1.12.5.
2017-05-21 17:12:48 +02:00
Marius Bakke cfa7473c2b
gnu: x265: Update to 2.4.
* gnu/packages/video.scm (x265): Update to 2.4.
2017-05-21 17:12:48 +02:00
Marius Bakke 3bc45ad460
gnu: vlc: Update to 2.2.5.1.
* gnu/packages/video.scm (vlc): Update to 2.2.5.1.
[source]: Remove obsolete snippet.
2017-05-21 17:12:48 +02:00
Marius Bakke ba58886a8c
gnu: libaacs: Update to 0.9.0.
* gnu/packages/video.scm (libaacs): Update to 0.9.0.
2017-05-21 17:12:48 +02:00
Ben Woodcroft ef81341f0e
gnu: diamond: Update to 0.9.0.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0.
[license]: Change to AGPL3+.
2017-05-21 16:08:03 +01:00
Ludovic Courtès e9c53359e7
gnu: guix: Update to a6d728b. 2017-05-21 16:59:04 +02:00
Ludovic Courtès a6d728b7aa
gnu: guix: Update to 0.13.0. 2017-05-21 16:58:53 +02:00
Ben Woodcroft 88682c9a72
gnu: fasttree: Update to 2.1.10.
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
2017-05-21 15:42:08 +01:00
Ben Woodcroft abc08cbae6
gnu: python-biom-format: Update to 2.1.6.
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
2017-05-21 15:42:08 +01:00
Ben Woodcroft c522f57e22
gnu: python-future: Update to 0.16.0.
* gnu/packages/python.scm (python-future): Update to 0.16.0.
2017-05-21 15:42:08 +01:00
Marius Bakke 1d0aa4d8c2
gnu: ccid: Update to 1.4.27.
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
2017-05-21 16:37:54 +02:00
Marius Bakke 20d2e1faa9
gnu: fio: Update to 2.20.
* gnu/packages/benchmark.scm (fio): Update to 2.20.
[arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
2017-05-21 16:33:42 +02:00
Marius Bakke 31044e6ff2
gnu: nano: Update to 2.8.4.
* gnu/packages/nano.scm (nano): Update to 2.8.4.
2017-05-21 16:17:01 +02:00
Marius Bakke 18f61e002b
gnu: vim: Update to 8.0.0600.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
2017-05-21 14:34:45 +02:00
Marius Bakke 8b1ff6f0ab
gnu: vim-full: Disable failing test.
* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
2017-05-21 14:34:45 +02:00
Ludovic Courtès 9d0c24d1be
tests: ssh: Use 'guile2.0-ssh'.
Fixes a regression introduced in 4d8806c3d6.

* gnu/tests/ssh.scm (run-ssh-test): Use GUILE2.0-SSH instead of GUILE-SSH.
2017-05-21 11:56:29 +02:00
Mark H Weaver 718448e176
gnu: linux-libre: Update to 4.11.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2.
(%linux-libre-hash): Update hash.
2017-05-21 02:03:32 -04:00
Mark H Weaver a08691dfbb
gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations.
This removes support for the "shared memory communications over RDMA" (SMC-R)
networking protocol, which was added in 4.11 without the knowledge of the RDMA
maintainers, and which is thought to contain significant security flaws.  For
details, see <https://lwn.net/Articles/723081> and
<https://lwn.net/Articles/723070>.

* gnu/packages/aux-files/linux-libre/4.11-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC.

723#	0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
2017-05-21 01:47:09 -04:00
Mark H Weaver 519fd6c367
gnu: linux-libre@4.9: Update to 4.9.29.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
2017-05-21 01:45:21 -04:00
Mark H Weaver ec8d69ebfe
gnu: linux-libre@4.4: Update to 4.4.69.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
2017-05-21 01:44:25 -04:00
Ludovic Courtès 324499184a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
2017-05-21 01:17:11 +02:00
Marius Bakke a588e34e0d
vm: Increase default disk size to account for ESP partition.
Fixes a test regression introduced by ecf5d53769.

* gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
2017-05-21 01:17:08 +02:00
Ludovic Courtès 9f8d6eb24a
gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
2017-05-21 01:14:51 +02:00
Marius Bakke 9a1bfe7648
vm: Increase default disk size to account for ESP partition.
Fixes a test regression introduced by ecf5d53769.

* gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
2017-05-21 01:07:12 +02:00
Leo Famulari fda33e495b
gnu: ghostscript: Add TODO comment about bundled jbig2dec.
* gnu/packages/ghostscript.scm (ghostscript): Add comment.
2017-05-20 16:26:29 -04:00
Leo Famulari 10cb88f85c
gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}.
* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jbig2dec)[source]: Use them.
2017-05-20 16:26:29 -04:00
Marius Bakke fefd4c197f
gnu: pcsc-lite: Update to 1.8.21.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
2017-05-20 21:42:58 +02:00
Leo Famulari 12eecbf0bb
gnu: icedtea@3: Add aarch32-drop.
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
2017-05-20 14:57:22 -04:00
Leo Famulari db531f734a
gnu: icedtea@3: Update to 3.4.0 [security fixes].
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
2017-05-20 14:57:22 -04:00
Leo Famulari b17bd261b0
gnu: imagemagick: Update to 6.9.8-6.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
2017-05-20 14:06:20 -04:00
Ludovic Courtès 82ce81ba06
gnu: guix: Add 'guile2.0-guix'.
* gnu/packages/package-management.scm (guile2.0-guix): New variable.
2017-05-20 20:00:53 +02:00
Ludovic Courtès 74460d1121
gnu: libssh, guile-ssh: Add a "debug" output.
* gnu/packages/ssh.scm (libssh)[outputs]: New field.
(guile-ssh)[outputs]: New field.
2017-05-20 19:49:36 +02:00
Leo Famulari 7dccad95b6
gnu: icedtea@2: Update to 2.6.10 [security fixes].
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-20 14:39:50 +02:00
Leo Famulari 6a9defd747
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-20 14:39:50 +02:00
Ludovic Courtès 429046e9dd
system: Use Guile 2.2 rather than 2.0 in %BASE-PACKAGES.
* gnu/system.scm (%base-packages): Change GUILE-2.0 to GUILE-2.2.
2017-05-20 14:39:49 +02:00
Marius Bakke 6520904b3e
vm: Add UEFI loader to disk images.
* gnu/build/vm.scm (install-efi): New procedure.
(initialize-hard-disk): Generate EFI blob when ESP is present.
* gnu/system/vm.scm (qemu-image): Append 40MiB EFI System Partition.

(cherry picked from commit ecf5d53769)
2017-05-20 10:57:00 +02:00
Marius Bakke 03119da211
vm: Support creating FAT partitions.
* gnu/build/vm.scm (create-ext-file-system, create-fat-file-system): New procedures.
(format-partition): Use them. Error for unknown file systems.
* gnu/system/vm.scm (qemu-image): Include DOSFSTOOLS.
* gnu/system/linux-initrd.scm (base-initrd): Always add nls_is8859-1.ko.
2017-05-20 10:20:35 +02:00
Marius Bakke fd5a30ab7b
vm: Support arbitrary partition flags.
* gnu/build/vm.scm (<partition>): Change BOOTABLE? to FLAGS.
(initialize-partition-table): Pass each flag to parted.
(initialize-hard-disk): Locate boot partition.
* gnu/system/vm.scm (qemu-image): Adjust partition flags.
2017-05-20 10:17:52 +02:00
Ludovic Courtès c383dc520f
gnu: guile-ssh: Fix potential double-free/use-after-free issue.
Fixes <http://bugs.gnu.org/26976>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
2017-05-20 10:17:49 +02:00
Ludovic Courtès 51fe9cd38d
services: user-homes: Do not create home directories marked as no-create.
Fixes a bug whereby GuixSD would create the /nonexistent directory, from
user 'nobody', even though it has 'create-home-directory?' set to #f.

* gnu/build/activation.scm (activate-users+groups): Add comment for
\#:create-home?.
(activate-user-home)[ensure-user-home]: Skip when CREATE-HOME? is #f or
SYSTEM? is #t.
* gnu/tests/base.scm (run-basic-test)["no extra home directories"]: New
tests.
2017-05-20 10:17:10 +02:00
Marius Bakke f3f8938fe0
install: Enable SSH in installation image.
* gnu/system/install.scm (%installation-services): Add OPENSSH-SERVICE-TYPE.
* doc/guix.texi (Preparing for Installation)[Networking]: Document it.
2017-05-20 10:16:37 +02:00
Marius Bakke e13b55ae79
services: openssh: Don't depend on networking.
* gnu/services/ssh.scm (openssh-shepherd-service): Drop requirement.
2017-05-20 10:16:34 +02:00
Leo Famulari a6c642ef63
maint: The 'release' target builds a VM image.
* gnu/system/examples/vm-image.tmpl: New file.
* Makefile.am (GUIXSD_VM_SYSTEMS, GUIXSD_VM_IMAGE_BASE,
GUIXSD_VM_IMAGE_SIZE): New variables.
(release): Add logic to build a VM image.
(EXAMPLES): Add 'gnu/system/examples/vm-image.tmpl'.
* doc/guix.texi (Running GuixSD in a VM, Installing GuixSD in a VM): Mention the
pre-built VM image.
2017-05-20 10:16:23 +02:00
Ludovic Courtès 56a03975eb
gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR.
See <https://bugs.gnu.org/25836> for background.

* gnu/packages/patches/aspell-default-dict-dir.patch: New file.
* gnu/packages/aspell.scm (aspell)[source](patches): New field.
[native-search-paths]: New field.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-05-20 10:16:14 +02:00
Leo Famulari c90fd5564c
gnu: qemu: Fix CVE-2017-7493.
* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu)[source]: Use it.
2017-05-20 10:15:53 +02:00
Ricardo Wurmus d03b34cf19
gnu: glibc/hurd: Do not apply i686 patch.
This is a follow-up to commit c2e4f14ac8.

* gnu/packages/base.scm (glibc/hurd)[arguments]: Override pre-configure phase
with a copy that does not include the patch application.
2017-05-20 10:15:31 +02:00
Ricardo Wurmus 5d6e38a6c3
gnu: glibc/hurd: Use modify-phases syntax.
* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax.
2017-05-20 10:15:28 +02:00
Efraim Flashner ed5e3ab8ab
gnu: tor: Update to 0.3.0.7.
* gnu/packages/tor.scm (tor): Update to 0.3.0.7.
2017-05-20 10:15:00 +02:00
Leo Famulari d30ce4a7e2
gnu: icedtea@2: Update to 2.6.10 [security fixes].
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-19 21:40:26 -04:00
ng0 cc5a76a74c
gnu: Add loksh.
* gnu/packages/shells.scm (loksh): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-20 02:42:04 +02:00
Leo Famulari 70f8242b13
gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-19 20:32:26 -04:00
Brendan Tildesley 1326166ebe
gnu: calibre: Don't create uninstaller.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley affaf98f77
gnu: calibre: Add exhaustive license list.
* gnu/packages/ebook.scm (calibre): Add exhaustive license list.
(chmlib)[license]: Use license: prefix.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley 9b7dcc2703
gnu: calibre: Add missing dependencies.
* gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython,
and python2-pygments.
[arguments]: Remove old TODO comments. libwmf and psutil are no longer used.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley eeba7d3a07
gnu: calibre: Unbundle chardet.
* gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet.
[inputs]: Add python2-chardet.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley b3399a0985
gnu: calibre: Unbundle liberation fonts.
*gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files.
[native-inputs]: Add font-liberation.
[arguments]: Calibre still references the bundled fonts, so we install the
packaged fonts to the directory the bundled fonts would have been.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley 29ec085170
gnu: calibre: Unbundle python2-markdown.
* gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to
bundled markdown with packaged. Remove markdown from source.
[inputs]: Add python2-markdown as a dependency.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley d94a99ec66
gnu: calibre: Import unbundle feedparser patch from debian.
* gnu/packages/ebook.scm (calibre)[source]: Reference new patch file.
[inputs]: Add python2-feedparser as an input.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
Brendan Tildesley 7010d231db
gnu: calibre: Import dont-load-icons patch from debian.
* gnu/packages/patches/calibre-dont-load-remote-icons.patch: New file.
* gnu/packages/ebooks.scm (calibre)[source]: Add reference to patch file.
* gnu/local.mk (dist_path_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
Brendan Tildesley cd6171c1b4
gnu: calibre: Update to 2.85.1.
* gnu/packages/ebooks.scm (calibre): Update to 2.85.1.
* gnu/packages/patches/calibre-drop-unrar.patch: Delete incompatible patch
file. Recreate debian patch file from the latest calibre git revision.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:20 +02:00
Ludovic Courtès b55dd31660
system: Use Guile 2.2 rather than 2.0 in %BASE-PACKAGES.
* gnu/system.scm (%base-packages): Change GUILE-2.0 to GUILE-2.2.
2017-05-19 23:38:52 +02:00
Marius Bakke 41fa164aa0
gnu: python-pyqt@4: Update to 4.12.
* gnu/packages/qt.scm (python-pyqt-4): Update to 4.12.
[source]: Adjust URI to file rename.
2017-05-19 21:33:43 +02:00
Marius Bakke 5ac3a671d8
gnu: python-pyqt: Update to 5.8.2.
* gnu/packages/qt.scm (python-pyqt): Update to 5.8.2.
2017-05-19 21:24:11 +02:00
Marius Bakke f6da41b54d
gnu: python-sip: Update to 4.19.2.
* gnu/packages/qt.scm (python-sip): Update to 4.19.2.
2017-05-19 21:24:11 +02:00
Marius Bakke 8ea98ee10c
doc: Update for UEFI systems.
* doc/guix.texi (USB Stick Installation): Mention UEFI.
(Preparing for Installation): Add notes about EFI System Partition, and
mounting partitions before init.
(Proceeding with the Installation): Mention the GRUB-EFI package.
(Using the Configuration System): Lightweight desktop is now a UEFI system.
(GRUB Configuration): Expand on package field. Add indexes.
* gnu/system/examples/lightweight-desktop.tmpl: Adjust to native EFI configuration.
2017-05-19 13:52:49 +02:00
Marius Bakke ecf5d53769
vm: Add UEFI loader to disk images.
* gnu/build/vm.scm (install-efi): New procedure.
(initialize-hard-disk): Generate EFI blob when ESP is present.
* gnu/system/vm.scm (qemu-image): Append 40MiB EFI System Partition.
2017-05-19 12:59:25 +02:00
Marius Bakke 4d415f0c3c
vm: Support creating FAT partitions.
* gnu/build/vm.scm (create-ext-file-system, create-fat-file-system): New procedures.
(format-partition): Use them. Error for unknown file systems.
* gnu/system/vm.scm (qemu-image): Include DOSFSTOOLS.
* gnu/system/linux-initrd.scm (base-initrd): Always add nls_is8859-1.ko.
2017-05-19 12:59:25 +02:00
Marius Bakke 01cc84dade
vm: Support arbitrary partition flags.
* gnu/build/vm.scm (<partition>): Change BOOTABLE? to FLAGS.
(initialize-partition-table): Pass each flag to parted.
(initialize-hard-disk): Locate boot partition.
* gnu/system/vm.scm (qemu-image): Adjust partition flags.
2017-05-19 12:59:25 +02:00
Ludovic Courtès e7fbd49132
gnu: guile-ssh: Fix potential double-free/use-after-free issue.
Fixes <http://bugs.gnu.org/26976>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
2017-05-19 10:50:20 +02:00
Tobias Geerinckx-Rice acf82a1152
gnu: btrfs-progs: Update to 4.11.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.
2017-05-18 18:55:11 +02:00
Tobias Geerinckx-Rice 4d2e1d1442
gnu: mcelog: Update to 150.
* gnu/packages/linux.scm (mcelog): Update to 150.
2017-05-18 18:55:11 +02:00
Efraim Flashner 8cf6a63382
gnu: nano: Update to 2.8.3.
* gnu/packages/nano.scm (nano): Update to 2.8.3.
2017-05-18 19:13:10 +03:00
Pjotr Prins 2b18ad054c
gnu: Add gemma.
* gnu/packages/bioinformatics.scm (gemma): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
Kyle Meyer f69c29f76d
gnu: Add emacs-helm-projectile.
* gnu/packages/emacs.scm (emacs-helm-projectile): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
Kyle Meyer 03cc1cf35b
gnu: Add emacs-helm-swoop.
* gnu/packages/emacs.scm (emacs-helm-swoop): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
Kyle Meyer 12e72d2a12
gnu: emacs-helm: Update to 2.7.0.
* gnu/packages/emacs.scm (emacs-helm): Update to 2.7.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:03 +02:00
Kyle Meyer 51ef4af6b3
gnu: emacs-async: Update to 1.9.2.
* gnu/packages/emacs.scm (emacs-async): Update to 1.9.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-18 14:22:02 +02:00
Mathieu Othacehe 7fb6a9d3a6
bootloader: extlinux: Remove syslinux-bootloader.
* gnu/bootloader/extlinux.scm (export): Remove syslinux-bootloader
  that was forgotten in 8ad37ad7b.
2017-05-18 12:10:03 +02:00
Mathieu Othacehe 8ad37ad7b6
bootloader: extlinux: Remove undefined symbols from export list.
* gnu/bootloader/extlinux.scm (export): Remove syslinux-bootloader,
  extlinux-configuration, syslinux-configuration.
2017-05-18 12:00:23 +02:00
Ludovic Courtès 41f76ae08a
services: user-homes: Do not create home directories marked as no-create.
Fixes a bug whereby GuixSD would create the /nonexistent directory, from
user 'nobody', even though it has 'create-home-directory?' set to #f.

* gnu/build/activation.scm (activate-users+groups): Add comment for
\#:create-home?.
(activate-user-home)[ensure-user-home]: Skip when CREATE-HOME? is #f or
SYSTEM? is #t.
* gnu/tests/base.scm (run-basic-test)["no extra home directories"]: New
tests.
2017-05-18 10:55:16 +02:00
Efraim Flashner a20e00ddaf
gnu: qt: Update to 5.8.0.
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2,
qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d,
qtcharts, qtdatavis3d, qtwebkit): Update to 5.8.0.
(qtdeclarative-render2d)[properties]: New field, package has been
absorbed by qtdeclarative and thus marked as superseded by it.
2017-05-18 10:17:42 +03:00
Efraim Flashner 4e825e2da3
gnu: qtbase: Update configure flags.
* gnu/packages/qt.scm (qtbase)[arguments]: Change the configure flags to
not use the precompiled headers. Enable x86_64 special hardware
instructions which have runtime detection.
2017-05-18 09:55:28 +03:00
Efraim Flashner 04f8decf1f
gnu: qtbase: Don't use bundled double-conversion.
* gnu/packages/qt.scm (qtbase)[inputs]: Add double-conversion.
2017-05-18 09:52:49 +03:00
Efraim Flashner 45f5bc0e74
gnu: qtconnectivity: Fix building on armhf and aarch64.
* gnu/packages/qt.scm (qtconnectivity)[arguments]: Add a phase to remove
a test which fails on arm hardware.
2017-05-18 09:51:23 +03:00
Efraim Flashner 7c5cf7a29d
gnu: qtscript: Fix building on aarch64.
* gnu/packages/patches/qtscript-disable-tests.patch: New file.
* gnu/packages/qt.scm (qtscript)[source]: Use it.
* gnu/local.am (dist_patch_DATA): Register it.
2017-05-18 09:49:43 +03:00
Kei Kebreau b81b8943cf
gnu: openttd: Update to 1.7.0.
* gnu/packages/games.scm (openttd): Update to 1.7.0.
2017-05-17 21:55:01 -04:00
Leo Famulari 0be20a8353
gnu: gnupg: Update to 2.1.21.
This release fixes a keyring corruption bug introduced in 2.1.20. See
<https://lists.gnupg.org/pipermail/gnupg-announce/2017q2/000405.html> for more
information.

* gnu/packages/gnupg.scm (gnupg): Update to 2.1.21.
2017-05-17 21:48:29 -04:00
Leo Famulari 89c83e8c3e
gnu: npth: Update to 1.4.
* gnu/packages/gnupg.scm (npth): Update to 1.4.
2017-05-17 21:48:29 -04:00
Leo Famulari b193fb2851
gnu: shadow: Update to 4.5.
This fixes a regression introduced by the fix for CVE-2017-2616.
See <https://github.com/shadow-maint/shadow/pull/72> for more information.

* gnu/packages/admin.scm (shadow): Update to 4.5.
[source]: Remove patches.
* gnu/packages/patches/shadow-4.4-su-snprintf-fix.patch,
gnu/packages/patches/shadow-CVE-2017-2616.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-05-17 21:20:29 -04:00
Kei Kebreau 6aa095f10c
gnu: manaplus: Update to 1.7.5.14.
* gnu/packages/games.scm (manaplus): Update to 1.7.5.14.
[inputs]: Remove physfs.
2017-05-17 21:06:59 -04:00
Kei Kebreau e28cb7a5f5
gnu: gamine: Update to 1.5.
* gnu/packages/games.scm (gamine): Update to 1.5.
2017-05-17 19:18:34 -04:00
ng0 45433bb03d
gnu: mc: Add unzip to inputs.
* gnu/packages/mc.scm (mc)[inputs]: Add unzip.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-18 01:00:53 +02:00
Marius Bakke c80cd4dfb4
install: Enable SSH in installation image.
* gnu/system/install.scm (%installation-services): Add OPENSSH-SERVICE-TYPE.
* doc/guix.texi (Preparing for Installation)[Networking]: Document it.
2017-05-18 01:00:53 +02:00
Marius Bakke 07bf68ed09
services: openssh: Don't depend on networking.
* gnu/services/ssh.scm (openssh-shepherd-service): Drop requirement.
2017-05-18 01:00:52 +02:00
Kei Kebreau 32199e9aa6
gnu: fizmo: Update to 0.8.4.
* gnu/packages/games.scm (fizmo): Update to 0.8.4.
[inputs]: Add freetype; change sdl to sdl2.
2017-05-17 17:35:38 -04:00
Kei Kebreau ec84c7870e
gnu: gnubg: Update to 1.05.
* gnu/packages/games.scm (gnubg): Update to 1.05.
2017-05-17 17:33:35 -04:00
Mark H Weaver 05bf7f507a
gnu: linux-libre: Update to 4.11.1.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.1.
(%linux-libre-hash): Update hash.
2017-05-17 14:56:18 -04:00
Mark H Weaver d6a02184f4
gnu: linux-libre@4.9: Update to 4.9.28.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.28.
2017-05-17 14:55:41 -04:00
Mark H Weaver 42ba7b6f2f
gnu: linux-libre@4.4: Update to 4.4.68.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.68.
2017-05-17 14:54:53 -04:00
Leo Famulari 4b236c88ea
maint: The 'release' target builds a VM image.
* gnu/system/examples/vm-image.tmpl: New file.
* Makefile.am (GUIXSD_VM_SYSTEMS, GUIXSD_VM_IMAGE_BASE,
GUIXSD_VM_IMAGE_SIZE): New variables.
(release): Add logic to build a VM image.
(EXAMPLES): Add 'gnu/system/examples/vm-image.tmpl'.
* doc/guix.texi (Running GuixSD in a VM, Installing GuixSD in a VM): Mention the
pre-built VM image.
2017-05-17 14:12:51 -04:00
Christopher Baines 872a6fd988
gnu: tailon: Use absolute paths for commands.
* gnu/packages/logging.scm (tailon)[arguments]: Patch commands.py to reference
  grep, awk, sed and tail by absolute paths.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-17 16:50:41 +02:00
Ludovic Courtès 411ba51189
gnu: Add gspell.
* gnu/packages/patches/gspell-dash-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gspell): New variable.

Co-authored-by: humanitiesNerd <catonano@gmail.com>
2017-05-17 16:20:06 +02:00
Ludovic Courtès 6d35b1c99c
gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR.
See <https://bugs.gnu.org/25836> for background.

* gnu/packages/patches/aspell-default-dict-dir.patch: New file.
* gnu/packages/aspell.scm (aspell)[source](patches): New field.
[native-search-paths]: New field.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-05-17 16:20:06 +02:00
Nicolas Goaziou 102a0e88cd
gnu: emacs-org: Update to 20170515.
* gnu/packages/emacs.scm (emacs-org): Update emacs-org.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-17 16:20:06 +02:00
Marius Bakke 5afc737363
gnu: mes: Don't fail when (%current-target-system) is #f.
* gnu/packages/mes.scm (mes)[native-inputs]: Test string equality differently.
2017-05-17 16:14:01 +02:00
Leo Famulari e7620b649c
gnu: qemu: Fix CVE-2017-7493.
* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu)[source]: Use it.
2017-05-17 07:45:01 -04:00
Ben Woodcroft 8d171471cf
gnu: ruby-rack: Update to 2.0.3.
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.3.
2017-05-17 10:29:38 +02:00
Leo Famulari 44a0591b2b
gnu: certbot, python-acme: Update to 0.14.1.
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.14.1.
2017-05-16 22:51:25 -04:00
Ben Woodcroft 21aecec1a9
gnu: ruby-concurrent: Update to 1.0.5.
* gnu/packages/ruby.scm (ruby-concurrent): Update to 1.0.5.
* gnu/packages/patches/ruby-concurrent-test-arm.patch: Adjust accordingly.
2017-05-17 00:28:56 +02:00
Ben Woodcroft 473f34cbdc
gnu: bundler: Update to 1.14.6.
* gnu/packages/ruby.scm (bundler): Update to 1.14.6.
2017-05-17 00:28:56 +02:00
Jan Nieuwenhuizen e0bb0a81ec
gnu: mes: Update to 0.6.
* gnu/packages/mes.scm (mes): Update to 0.6.
2017-05-17 00:00:05 +02:00
Julien Lepiller 16dcac5b26
gnu: php: Update to 7.1.5.
* gnu/packages/php.scm (php): Update to 7.1.5.
[arguments]: Remove a no longer relevant test fix.
2017-05-16 22:43:34 +02:00
Ricardo Wurmus 441e99d433
gnu: glibc/hurd: Do not apply i686 patch.
This is a follow-up to commit c2e4f14ac8.

* gnu/packages/base.scm (glibc/hurd)[arguments]: Override pre-configure phase
with a copy that does not include the patch application.
2017-05-16 22:37:31 +02:00
Ricardo Wurmus 711a0dcefa
gnu: glibc/hurd: Use modify-phases syntax.
* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax.
2017-05-16 22:37:31 +02:00
Kei Kebreau 231e48d6db
gnu: emacspeak: Update to 46.0.
* gnu/packages/emacs.scm (emacspeak): Update to 46.0.
[source]: Add snippet to delete pre-compiled Emacs Lisp files.
[arguments]: Adjust phases for the update.
2017-05-16 16:02:59 -04:00
Efraim Flashner ca05bc0e1e
gnu: tor: Update to 0.3.0.7.
* gnu/packages/tor.scm (tor): Update to 0.3.0.7.
2017-05-16 22:26:22 +03:00
Ricardo Wurmus 6db77c7ca1
gnu: java-stringtemplate: Get closer to fixing tests.
* gnu/packages/java.scm (java-stringtemplate)[arguments]: Set test-dir and
override default test target.  Keep tests disabled because they fail for
unknown reasons.
[inputs]: Add java-junit.
2017-05-16 15:18:17 +02:00
Ricardo Wurmus 1345eeb03a
gnu: Rename stringtemplate4-4.0.6 to java-stringtemplate-4.0.6.
* gnu/packages/java.scm (stringtemplate4-4.0.6): Rename this...
(java-stringtemplate-4.0.6): ...to this.
(antlr3)[propagated-inputs]: Adjust accordingly.
2017-05-16 15:18:17 +02:00
Ricardo Wurmus 64b7efc0db
gnu: Rename stringtemplate4 to java-stringtemplate.
* gnu/packages/java.scm (stringtemplate4): Rename this...
(java-stringtemplate): ...to this.
(stringtemplate4-4.0.6)[inherit]: Adjust accordingly.
(antlr3)[inputs]: Likewise.
2017-05-16 15:18:17 +02:00
Ricardo Wurmus f4aa4cfe00
gnu: stringtemplate4: Prettify "generate-grammar" phase.
* gnu/packages/java.scm (stringtemplate4)[arguments]: Rewrite
"generate-grammar" phase to use "with-directory-excursion" and to report
success or failure.
2017-05-16 15:18:17 +02:00
Ricardo Wurmus 407df789cf
gnu: stringtemplate4: Inherit from java-stringtemplate-3.
* gnu/packages/java.scm (stringtemplate4)[inherit]: Add
"java-stringtemplate-3" as parent.
[home-page, synopsis, description, license]: Inherit from parent.
2017-05-16 15:18:17 +02:00
Ricardo Wurmus b101b4e8c1
gnu: java-stringtemplate-3: Use return value in build phase.
* gnu/packages/java.scm (java-stringtemplate-3)[arguments]: Let
build phase "generate-grammar" return success or failure.
2017-05-16 15:18:17 +02:00
Ricardo Wurmus 2fcda6d291
gnu: java-stringtemplate-3: Enable tests.
* gnu/packages/java.scm (java-stringtemplate-3)[arguments]: Enable tests; add
build phase to fix tests.
2017-05-16 15:18:16 +02:00
Ricardo Wurmus 129d926d26
gnu: java-stringtemplate-3: Do not hardcode version string.
* gnu/packages/java.scm (java-stringtemplate-3)[arguments]: Take current
version string.
2017-05-16 15:18:16 +02:00
Ricardo Wurmus e44112e1a5
gnu: Rename stringtemplate3 to java-stringtemplate-3.
* gnu/packages/java.scm (stringtemplate3): Replace this...
(java-stringtemplate-3): ...with this.
[name]: Change to "java-stringtemplate".
(stringtemplate4)[inputs]: Adjust accordingly.
(stringtemplate4-4.0.6)[inputs]: Likewise.
(antlr3)[inputs, propagated-inputs]: Likewise.
(antlr3-3.3)[propagated-inputs, arguments]: Likewise.
(antlr3-3.1)[propagated-inputs]: Likewise.
2017-05-16 15:18:16 +02:00
Andy Patterson f56da605d8
gnu: sbcl-slynk-boot0: Give the package an appropriate name.
* gnu/packages/lisp.scm (sbcl-slynk-boot0)[name]: Change it to reflect the
bootstrap status of the package.
[arguments]<#:asd-system-name>: Add the appropriate value.
(sbcl-slynk-arglists)[arguments]: Set the appropriate #:asd-file and forcibly
unset #:asd-system-name.
(sbcl-slynk)[name]: Change it to the variable name.
(cl-slynk)[name]: Likewise.
2017-05-16 15:18:16 +02:00
Andy Patterson 4209c31b8f
build-system/asdf: Retain references to source files for binary outputs.
In support of long-running programs in which the users would like to be able
to jump to the source of a definition of any of the dependencies (itself
included) of the program.

* guix/build/asdf-build-system.scm (library-outputs): Move from here ...
* guix/build/lisp-utils.scm (library-outputs): ... to here.
(build-program): Accept dependency-prefixes argument, to allow the caller to
specify references which should be retained.  Default to the library's output.
(build-image): Likewise.
(generate-executable): Likewise.
* gnu/packages/lisp.scm (sbcl-stumpwm+slynk, sbcl-slynk, sbcl-stumpwm): Adjust
accordingly to the new interface.
(sbcl-stumpwm+slynk)[native-inputs]: Move to ...
[inputs]: ... here.
2017-05-16 15:18:16 +02:00
Ricardo Wurmus ac2592536d
gnu: Add cl-unicode.
* gnu/packages/lisp.scm (sbcl-cl-unicode-base, sbcl-cl-unicode)
(ecl-cl-unicode, cl-unicode): New variables.

Co-Authored-By: Andy Patterson <ajpatter@uwarerloo.ca>
2017-05-16 15:18:15 +02:00
Andy Patterson b4c9f0c50d
build-system/asdf: Parameterize the lisp type and implementation globally.
* guix/build-system/asdf.scm (asdf-build)[builder]: Parameterize %lisp-type
and %lisp before invoking the build procedure. Don't pass #:lisp-type as an
argument to said procedure.
* guix/build/asdf-build-system.scm: Adjust accordingly.
(source-install-prefix): Rename to %lisp-source-install-prefix.
* guix/build/lisp-utils.scm: Adjust accordingly.
(%lisp-type): New parameter.
(bundle-install-prefix): Rename to %bundle-install-prefix.
* gnu/packages/lisp.scm: Adjust accordingly.
2017-05-16 15:18:15 +02:00
Andy Patterson 6de91ba2a1
build-system/asdf: Make #:lisp a package argument.
* guix/build-system/asdf.scm (lower): Change argument name to `lisp-type'.
(asdf-build): Change argument name to `lisp-type'.  Remove `lisp' as an
argument to the returned procedure.  Change the argument passed to build
phases to `lisp-type'.
* guix/build/asdf-build-system.scm (copy-source, build, check)
(create-asd-file, symlink-asd-files, cleanup-files, strip): Respect
`lisp-type` argument.
* gnu/packages/lisp.scm (sbcl-stumpwm, sbcl-stumpwm+slynk): Likewise.
2017-05-16 15:18:15 +02:00
Andy Patterson 0e1371be09
build-system/asdf: Don't rename inputs.
* guix/build-system/asdf.scm (package-with-build-system)[transform]: Use updated
`new-inputs' procedure for inputs and native-inputs.
<rewrite>: Don't rename inputs.
<new-propagated-inputs>: Draw from package-inputs and package-native-inputs
for source packages.  Use the original package's propagated-inputs otherwise.
<new-inputs>: Convert into a function to be used to transform inputs and
native-inputs.
* gnu/packages/lisp.scm (sbcl-fiveam, sbcl-bordeaux-threads)
(sbcl-flexi-streams, sbcl-cl-ppcre, sbcl-stumpwm, sbcl-slynk-arglists)
(sbcl-slynk-fancy-inspector): Don't prefix input names.
2017-05-16 15:18:14 +02:00
Andy Patterson 35189728cd
build-system/asdf: Use asdf to determine dependencies.
This removes the need for conventions to determine which inputs are run-time
dependencies, and also the need to specify "special" dependencies.

* guix/build/lisp-utils.scm (patch-asd-file, lisp-dependencies)
(wrap-perform-method): Remove them.
(inputs->asd-file-map, system-dependencies, generate-system-definition)
(generate-dependency-links, make-asd-file): New procedures.
(lisp-eval-program): Add an error if no lisp matches.
(compile-system): Don't use asdf's in-built asd-file generator.
2017-05-16 15:18:14 +02:00
Andy Patterson 290bf612bb
gnu: cl-stumpwm: Build the library in "lib" and the program in "bin".
* gnu/packages/lisp.scm (sbcl-stumpwm)[outputs]: Remove "bin" and add "lib".
[arguments]<#:phases>: Change the target of `build-program' to the "out"
output. Likewise, change the target of the desktop file generation.
(sbcl-stumpwm+slynk)[inputs]: Use the "lib" output of sbcl-stumpwm.
2017-05-16 15:18:14 +02:00
Andy Patterson 75e8b3af69
gnu: cl-slynk: Explain some naming choices.
* gnu/packages/lisp.scm (sbcl-slynk-boot0): Add comments explaining its
purpose and the reason its package-name must differ from its name.
2017-05-16 15:18:13 +02:00
Andy Patterson 14afc7b89c
gnu: cl-slynk: Clarify the description.
* gnu/packages/lisp.scm (sbcl-slynk-boot0)[description]: Describe slime.
2017-05-16 15:18:13 +02:00
Ludovic Courtès 33ec536b90
gnu: guix: Update snapshot.
* gnu/packages/package-management.scm (guix): Update to ce92d26.
2017-05-16 15:18:12 +02:00
Ludovic Courtès 7ee7ee16ea
gnu: guix: Update snapshot.
* gnu/packages/package-management.scm (guix): Update to ce92d26.
2017-05-16 15:14:33 +02:00
Mathieu Othacehe bcaf67c44f
bootloader: Add bootloader name to boot-parameters record.
* gnu/system.scm (<boot-parameters>)[name]: New field.
(boot-parameters-boot-name): Ditto.
(operating-system-boot-parameters-file): Add new field.
(operating-system-boot-parameters): Ditto.
(read-boot-parameters): Ditto.
2017-05-16 14:41:01 +02:00
Mathieu Othacehe 9121ce553d
bootloader: Adapt vm to new bootloader API.
* gnu/build/install.scm (install-boot-config): New procedure.
  (install-grub): Move to (gnu bootloader grub).
* gnu/build/vm.scm (register-bootcfg-root): Rename register-grub.cfg-root and
  adjust accordingly.
  (initialize-hard-disk): Takes a bootloader-package, bootcfg, bootcfg-location and
  bootloader-installer procedure. Adjust accordingly.
* gnu/system/vm.scm (qemu-image): Adjust to initialize-hard-disk.
  (system-disk-image, system-qemu-image, system-qemu-image/shared-store):
  Adjust to qemu-image.
2017-05-16 14:41:01 +02:00
Mathieu Othacehe b09a8da4a2
bootloader: Add extlinux support.
* gnu/bootloader.scm: New file.
* gnu/bootloader/extlinux.scm: New file.
* gnu/bootloader/grub.scm: New file.
* gnu/local.mk: Build new files.
* gnu/system.scm: Adapt to new bootloader api.
* gnu/scripts/system.scm: Adapt to new bootloader api.
* gnu.scm: Remove (gnu system grub) and replace by (gnu bootloader) and (gnu
bootloader grub) modules.
* gnu/system/grub.scm: Moved content to gnu/bootloader/grub.scm.
* gnu/system/vm: Replace (gnu system grub) module by (gnu bootloader).
* gnu/tests.scm: Ditto.
* gnu/tests/nfs.scm: Ditto.
2017-05-16 14:41:01 +02:00
Ludovic Courtès 5a3429bcc5
gnu: guile-ssh: Fix bug in 'node-guile-version'.
* gnu/packages/patches/guile-ssh-rexec-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): New field.
2017-05-16 14:16:56 +02:00
Leo Famulari 4a3495d57c
gnu: khard: Update to 0.11.4.
* gnu/packages/mail.scm (khard): Update to 0.11.4.
2017-05-15 22:27:53 -04:00
Ludovic Courtès a068300628
gnu: bind: Rename variable to 'isc-bind'.
Reported by Leo Famulari.

* gnu/packages/dns.scm (bind): Rename to...
(isc-bind): ... this.
* gnu/packages/sssd.scm (sssd)[inputs]: Adjust accordingly.
2017-05-16 00:00:03 +02:00
Ludovic Courtès c22c9fa589
services: guix: Authorize the key for bayfront.guixsd.org.
* gnu/services/base.scm (%default-authorized-guix-keys): Add
"bayfront.guixsd.org".
2017-05-15 23:55:10 +02:00
Ricardo Wurmus 6d225e89db
gnu: antlr2: Minor stylistic changes.
* gnu/packages/java.scm (antlr2)[source]: Fix indentation; end snippet on #t;
add comment next to disabled tests.
2017-05-15 23:39:44 +02:00
Ricardo Wurmus 3ad9039515
gnu: antlr2: Simplify build phases.
* gnu/packages/java.scm (antl2)[arguments]: Simplify build phases.
2017-05-15 23:35:51 +02:00
Ricardo Wurmus 4511e0db23
gnu: Add non-timeline.
* gnu/packages/music.scm (non-timeline): New variable.
2017-05-15 23:01:24 +02:00
Ricardo Wurmus 46bb58b864
gnu: Add non-mixer.
* gnu/packages/music.scm (non-mixer): New variable.
2017-05-15 23:01:20 +02:00
Ricardo Wurmus a5cdcf6c09
gnu: Add java-javax-mail.
* gnu/packages/java.scm (java-javax-mail): New variable.
2017-05-15 22:33:17 +02:00
Ricardo Wurmus 0e660c4de9
gnu: Add java-log4j-api.
* gnu/packages/java.scm (java-log4j-api): New variable.
2017-05-15 22:33:17 +02:00
Ricardo Wurmus c24d11b734
gnu: Add java-eclipse-jdt-core.
* gnu/packages/java.scm (java-eclipse-jdt-core): New variable.
2017-05-15 22:33:17 +02:00
Ricardo Wurmus bf96acf7e5
gnu: Add java-eclipse-text.
* gnu/packages/java.scm (java-eclipse-text): New variable.
2017-05-15 22:33:17 +02:00
Ricardo Wurmus 31342529b2
gnu: Add java-eclipse-core-commands.
* gnu/packages/java.scm (java-eclipse-core-commands): New variable.
2017-05-15 22:33:16 +02:00
Ricardo Wurmus 1bb191fc4b
gnu: Add java-eclipse-team-core.
* gnu/packages/java.scm (java-eclipse-team-core): New variable.
2017-05-15 22:33:16 +02:00
Ricardo Wurmus afb5858dd1
gnu: Add java-eclipse-compare-core.
* gnu/packages/java.scm (java-eclipse-compare-core): New variable.
2017-05-15 22:33:16 +02:00
Ricardo Wurmus 1d4234d4c2
gnu: Add java-icu4j.
* gnu/packages/icu4c.scm (java-icu4j): New variable.
2017-05-15 22:33:16 +02:00
Ricardo Wurmus 6636f6388f
gnu: Add java-eclipse-core-resources.
* gnu/packages/java.scm (java-eclipse-core-resources): New variable.
2017-05-15 22:33:16 +02:00
Ricardo Wurmus 7c3d479e83
gnu: Add java-eclipse-ant-core.
* gnu/packages/java.scm (java-eclipse-ant-core): New variable.
2017-05-15 22:33:16 +02:00
Ricardo Wurmus e8d0f7c8f9
gnu: Add java-eclipse-core-variables.
* gnu/packages/java.scm (java-eclipse-core-variables): New variable.
2017-05-15 22:33:16 +02:00
Ricardo Wurmus e96060de20
gnu: Add java-eclipse-core-expressions.
* gnu/packages/java.scm (java-eclipse-core-expressions): New variable.
2017-05-15 22:33:15 +02:00
Ricardo Wurmus b3806a1506
gnu: Add java-eclipse-core-filesystem.
* gnu/packages/java.scm (java-eclipse-core-filesystem): New variable.
2017-05-15 22:33:15 +02:00
Ricardo Wurmus 6a7f7e49b3
gnu: Add java-eclipse-core-runtime.
* gnu/packages/java.scm (java-eclipse-core-runtime): New variable.
2017-05-15 22:33:15 +02:00
Ricardo Wurmus 4ad3d4f337
gnu: Add java-eclipse-core-contenttype.
* gnu/packages/java.scm (java-eclipse-core-contenttype): New variable.
2017-05-15 22:33:15 +02:00
Ricardo Wurmus 3f97021441
gnu: Add java-eclipse-equinox-preferences.
* gnu/packages/java.scm (java-eclipse-equinox-preferences): New variable.
2017-05-15 22:33:15 +02:00
Ricardo Wurmus 65214c872a
gnu: Add java-eclipse-equinox-app.
* gnu/packages/java.scm (java-eclipse-equinox-app): New variable.
2017-05-15 22:33:15 +02:00
Ricardo Wurmus fbaf09ebf2
gnu: Add java-eclipse-equinox-registry.
* gnu/packages/java.scm (java-eclipse-equinox-registry): New variable.
2017-05-15 22:33:15 +02:00
Ricardo Wurmus 90368ad9d8
gnu: Add java-eclipse-core-jobs.
* gnu/packages/java.scm (java-eclipse-core-jobs): New variable.
2017-05-15 22:33:14 +02:00
Ricardo Wurmus 8af92c8ffd
gnu: Add java-osgi-service-event.
* gnu/packages/java.scm (java-osgi-service-event): New variable.
2017-05-15 22:33:14 +02:00
Ricardo Wurmus 81b55b1e77
gnu: Add java-eclipse-equinox-common.
* gnu/packages/java.scm (java-eclipse-equinox-common): New variable.
2017-05-15 22:33:14 +02:00
Ricardo Wurmus 674e93a057
gnu: Add java-eclipse-osgi.
* gnu/packages/java.scm (java-eclipse-osgi): New variable.
2017-05-15 22:33:14 +02:00
Ricardo Wurmus 37e2e5d434
gnu: Add java-osgi-core.
* gnu/packages/java.scm (java-osgi-core): New variable.
2017-05-15 22:33:14 +02:00
Ricardo Wurmus 6ee6d0b58a
gnu: Add java-osgi-annotation.
* gnu/packages/java.scm (java-osgi-annotation): New variable.
2017-05-15 22:33:14 +02:00
Ricardo Wurmus 77d7b57cdc
gnu: Add java-simple-xml.
* gnu/packages/xml.scm (java-simple-xml): New variable.
2017-05-15 22:33:14 +02:00
Ricardo Wurmus ff3f67668d
gnu: Add java-rsyntaxtextarea.
* gnu/packages/textutils.scm (java-rsyntaxtextarea): New variable.
2017-05-15 22:33:13 +02:00
Ricardo Wurmus 423b6840b3
gnu: Add java-usb4java.
* gnu/packages/libusb.scm (java-usb4java): New variable.
2017-05-15 22:33:13 +02:00
Ricardo Wurmus 18fe5ef152
gnu: Add libusb4java.
* gnu/packages/libusb.scm (libusb4java): New variable.
2017-05-15 22:33:13 +02:00
Ricardo Wurmus b13a7cf82d
gnu: Add java-commons-net.
* gnu/packages/java.scm (java-commons-net): New variable.
2017-05-15 22:33:13 +02:00
Ricardo Wurmus d44bcd7ac7
gnu: Add java-asm.
* gnu/packages/java.scm (java-asm): New variable.
2017-05-15 22:33:13 +02:00
Leo Famulari c48a145fbb
system: grub: Actually default to 'gfxterm' for displaying the GRUB menu.
This is a followup to commit e0b2e93005.

* gnu/system/grub.scm (eye-candy): Re-order the elements of the generated
GRUB configuration.
2017-05-15 16:22:17 -04:00
Ricardo Wurmus a62446987e
gnu: Add java-commons-compress.
* gnu/packages/java.scm (java-commons-compress): New variable.
2017-05-15 22:00:35 +02:00
Ricardo Wurmus 808cb58f86
gnu: Add java-jsch.
* gnu/packages/java.scm (java-jsch): New variable.
2017-05-15 22:00:30 +02:00
Ricardo Wurmus 4b34c21ff0
gnu: Add java-commons-net.
* gnu/packages/java.scm (java-commons-net): New variable.
2017-05-15 22:00:25 +02:00
Ricardo Wurmus cbce5de265
gnu: Add java-httpcomponents-httpmime.
* gnu/packages/java.scm (java-httpcomponents-httpmime): New variable.
2017-05-15 22:00:21 +02:00
Ricardo Wurmus 14a671d8f9
gnu: Add java-httpcomponents-httpclient.
* gnu/packages/java.scm (java-httpcomponents-httpclient): New variable.
2017-05-15 22:00:16 +02:00
Ricardo Wurmus e1dd78f68a
gnu: Add java-httpcomponents-httpcore-ab.
* gnu/packages/java.scm (java-httpcomponents-httpcore-ab): New variable.
2017-05-15 22:00:11 +02:00
Ricardo Wurmus 3a068b4307
gnu: Add java-httpcomponents-httpcore-nio.
* gnu/packages/java.scm (java-httpcomponents-httpcore-nio): New variable.
2017-05-15 22:00:06 +02:00
Ricardo Wurmus 4f4d2e470d
gnu: Add java-httpcomponents-httpcore.
* gnu/packages/java.scm (java-httpcomponents-httpcore): New variable.
2017-05-15 22:00:00 +02:00
Ricardo Wurmus 90e65abe42
gnu: Add java-mockito-1.
* gnu/packages/java.scm (java-mockito): New variable.
2017-05-15 21:59:54 +02:00
John Darrington cdb2a21160
gnu: Add mia.
* gnu/packages/image-processing.scm (mia): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-05-15 21:34:09 +02:00
Ricardo Wurmus 7fe4e556c0
gnu: Add sssd.
* gnu/packages/sssd.scm (sssd): New variable.
2017-05-15 21:28:29 +02:00
Ricardo Wurmus dbe874dcbf
gnu: Add ding-libs.
* gnu/packages/sssd.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-05-15 21:26:50 +02:00
Ricardo Wurmus 751f8582b5
gnu: Add http-parser.
* gnu/packages/web.scm (http-parser): New variable.
2017-05-15 21:24:43 +02:00
John Darrington 504c285d10
gnu: Add dcmtk.
* gnu/packages/image-processing.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-05-15 21:22:06 +02:00
Ricardo Wurmus 9fdda0b2f8
gnu: librecad: Use modular Qt.
* gnu/packages/engineering.scm (librecad)[inputs]: Remove "qt", add "qtbase"
and "qtsvg".
2017-05-15 21:22:06 +02:00
Marius Bakke 9b22c4dd5e
gnu: ffmpeg: Update to 3.3.1.
* gnu/packages/video.scm (ffmpeg): Update to 3.3.1.
2017-05-15 19:50:55 +02:00
Hartmut Goebel 9eb0f43031
gnu: Update kde frameworks to 5.34.0.
* gnu/packages/kde-frameworks.scm (solid): Update to 5.34.0 [native-inputs]:
  Add dbus. <check>: Replace standard phase.
  (networkmanager-qt): Update to 5.34.0. [source]: Remove patches.
  (kfilemetadata) Update to 5.32.0. <check-setup>: New phase <check> Move
  phase after install phase.  [inputs] Add catdoc, exiv2, ffmpeg, poppler,
  taglib.
  (attica, baloo, bluez-qt, breeze-icons, extra-cmake-modules, kactivities,
  kactivities-stats, kapidox, karchive, kauth, kbookmarks, kcmutils, kcodecs,
  kcompletion, kconfig, kconfigwidgets, kcoreaddons, kcrash, kdbusaddons,
  kdeclarative, kded, kdesignerplugin, kdesu, kdnssd, kdoctools, kemoticons,
  kglobalaccel, kguiaddons, ki18n, kiconthemes, kidletime, kimageformats,
  kinit, kio, kitemmodels, kitemviews, kjobwidgets, knewstuff, knotification,
  knotifyconfig, kpackages, kparts, kpeople, kplotting, kpty, krunner,
  kservice, ksyntaxhighlighting, ktexteditor, ktextwidgets, kunitconversion,
  kwallet, kwayland, kwidgetsaddons, kwindowsystem, kxmlgui, kxmlrpcclient,
  modemmanager-qt, networkmanager-qt, oxygen-icons, plasma-framework, sonnet,
  threadweaver): Update to 5.34.0.
* gnu/packages/patches/networkmanager-qt-activeconnection-test-1.patch,
  gnu/packages/patches/networkmanager-qt-activeconnection-test-2.patch:
  Remove files.
* gnu/local.mk (dist_patch_DATA): Remove the patch files.
2017-05-15 12:41:08 +02:00
Hartmut Goebel d0abaf8960
gnu: Add catdoc.
* gnu/packages/textutils.scm (catdoc): New variable.
2017-05-15 12:41:08 +02:00
Brendan Tildesley 1edbdb0bfc
gnu: par2cmdline: Update to 0.7.0
* gnu/packages/backup.scm (par2cmdline): Update to 0.7.0
[source]: Remove old test fix incorporated upstream.
[arguments]: Disable parallel tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-05-14 22:05:48 -04:00
Christopher Allan Webber d7fa39ccec
services: Add 'thermald-service-type'.
* gnu/services/pm.scm (<thermald-configuration>): New record type.
(thermald-shepherd-service, thermald-service-type): New variables.
* doc/guix.texi (Thermal Management): New section documenting thermald.
2017-05-14 18:56:32 -05:00
Christopher Allan Webber 5898968438
gnu: Add thermald.
* gnu/packages/admin.scm (thermald): New variable.
2017-05-14 18:56:27 -05:00
Leo Famulari e0b2e93005
system: grub: Expose GRUB's interactive interface settings.
* gnu/system/grub.scm (<grub-configuration>): Add new fields
terminal-outputs, terminal-inputs, serial-unit, and serial-speed.
(grub-setup-io, setup-gfxterm): New procedures.
* doc/guix.texi (GRUB Configuration): Document the new fields.
2017-05-14 14:12:26 -04:00
Jan Nieuwenhuizen 4be014128e
gnu: Add Nyacc.
* gnu/packages/mes.scm (nyacc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-14 15:49:50 +02:00
Tobias Geerinckx-Rice b6b281a5ba
gnu: weechat: Update to 1.8.
* gnu/packages/irc.scm (weechat): Update to 1.8.
2017-05-14 15:06:26 +02:00
Tobias Geerinckx-Rice a88f2c33d6
gnu: pv: Use HTTPS.
* gnu/packages/pv.scm (pv)[source, home-page]: Use HTTPS.
2017-05-14 14:49:10 +02:00
Ludovic Courtès 4d8806c3d6
gnu: guile-ssh: Rename "guile2.2-ssh" to "guile-ssh".
* gnu/packages/ssh.scm (guile-ssh)[inputs]: Change GUILE-2.0 to
GUILE-2.2.
(guile2.2-ssh): Define using 'deprecated-package'.
(guile2.0-ssh): New variable.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Adjust
accordingly.
2017-05-13 22:25:23 +02:00
Ludovic Courtès 2252f087d4
gnu: guile-json: Rename "guile2.2-json" to "guile-json".
* gnu/packages/guile.scm (guile-json)[native-inputs]: Change GUILE-2.0
to GUILE-2.2.
(guile2.2-json): Define using 'deprecated-package'.
(guile2.0-json): New variable.
* gnu/packages/bioinformatics.scm (rcas-web)[inputs]: Update accordingly.
* gnu/packages/ci.scm (cuirass)[inputs]: Likewise.
* gnu/packages/package-management.scm (guix)[inputs]: Likewise.
2017-05-13 22:25:22 +02:00
Ethan R. Jones a76ca052d6
gnu: Add nnn.
* gnu/packages/admin.scm (nnn): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-13 17:55:34 +02:00
Arun Isaac 92d9cfef6b
gnu: emacs-clojure-mode: Enable tests.
* gnu/packages/emacs.scm (emacs-clojure-mode)[arguments]: Add 'check' phase.
[native-inputs]: Add emacs-dash, emacs-s and ert-runner.
2017-05-13 20:44:59 +05:30
Arun Isaac 8744901365
gnu: Add ert-runner.
* gnu/packages/emacs.scm (ert-runner): New variable.
2017-05-13 20:44:58 +05:30
Arun Isaac 605ecbcb2a
gnu: Add emacs-commander.
* gnu/packages/emacs.scm (emacs-commander): New variable.
2017-05-13 20:44:58 +05:30
Arun Isaac 99d406c92d
gnu: Add emacs-ansi.
* gnu/packages/emacs.scm (emacs-ansi): New variable.
2017-05-13 20:44:58 +05:30
Alex Sassmannshausen 0e40b75506
gnu: php: Add '--with-mysqli' configure option.
* gnu/packages/php.scm: Add '--with-mysqli' configure option.
2017-05-13 13:58:37 +02:00
Alex Sassmannshausen 4cd1d1c12e
gnu: php: Remove '--enable-threads' configure option.
* gnu/packages/php.scm (php): Remove '--enable-threads' configure option, as
  it is no longer recognized in PHP 7.
2017-05-13 13:58:27 +02:00
Arun Isaac a742becd6c
gnu: emacs-key-chord: Set source file-name.
* gnu/packages/emacs.scm (emacs-key-chord)[source]: Add file-name field.
2017-05-13 16:41:54 +05:30
Arun Isaac 8a421ddb29
gnu: emacs-transpose-frame: Set source file-name.
* gnu/packages/emacs.scm (emacs-transpose-frame)[source]: Add file-name field.
2017-05-13 16:41:54 +05:30
Arun Isaac 6669a93284
gnu: emacs-goto-chg: Set source file-name.
* gnu/packages/emacs.scm (emacs-goto-chg)[source]: Add file-name field.
2017-05-13 16:41:54 +05:30
Mathieu Othacehe a5e8f5972c
gnu: python-termcolor: Fix uri.
* gnu/packages/python.scm (python-termcolor): Remove "python-" from
  pypi uri.

This was causing guix refresh to fail on this package.
2017-05-13 12:40:20 +02:00
Alex Kost 4e4e018525
system: Export 'read-boot-parameters'.
This partially reverts commit 9530e73b49.

* gnu/system.scm: Export 'read-boot-parameters' for backward compatibility.
2017-05-13 12:14:28 +03:00
Leo Famulari a23e0a9f87
gnu: gimp: Update to 2.8.22 [fixes CVE-2007-3126].
* gnu/packages/gimp.scm (gimp): Update to 2.8.22.
2017-05-12 21:44:14 -04:00
ng0 3312fda09d
gnu: Add e3.
* gnu/packages/text-editors.scm (e3): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-05-13 00:03:46 +02:00
Ludovic Courtès e2f9832f45
tests: "basic" test loads (guix …) modules from the right place.
This is a followup to 7561881f2a.

* gnu/tests/base.scm (run-basic-test)["/run/current-system is a GC
root"]: Remove 'set!' statements, add 'add-to-load-path' statement for
GUIX.
2017-05-13 00:03:46 +02:00
Ludovic Courtès d5094c8115
tests: Strengthen GC root test.
* gnu/tests/base.scm (run-basic-test)["/run/current-system is a GC
root"]: Check for a specific return value, 'success!.
2017-05-13 00:03:46 +02:00
Mathieu Othacehe 2088513214
gnu: reptry: Fix build.
* gnu/packages/patches/reptyr-fix-gcc-7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add new patch.
* gnu/packages/screen.scm (reptyr): Use patch.
2017-05-12 20:19:13 +02:00
Marius Bakke 9bd42f1dc3
gnu: postgresql: Update to 9.6.3 [fixes CVE-2017-{7484,7485,7486}].
* gnu/packages/databases.scm (postgresql): Update to 9.6.3.
2017-05-12 19:27:11 +02:00
Marius Bakke ffed9eabcc
gnu: Add lierolibre.
* gnu/packages/patches/lierolibre-check-unaligned-access.patch,
gnu/packages/patches/lierolibre-is-free-software.patch,
gnu/packages/patches/lierolibre-remove-arch-warning.patch,
gnu/packages/patches/lierolibre-try-building-other-arch.patch,
gnu/packages/patches/lierolibre-newer-libconfig.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/games.scm (lierolibre): New variable.
2017-05-12 15:42:08 +02:00
Marius Bakke ace41d5071
gnu: openvpn: Update to 2.4.2 [fixes CVE-2017-7478, CVE-2017-7479].
* gnu/packages/vpn.scm (openvpn): Update to 2.4.2.
2017-05-12 15:22:56 +02:00
Marius Bakke d7b344c5cd
gnu: rocksdb: Disable tests on 32-bit systems.
* gnu/packages/databases.scm (rocksdb)[arguments]: Make #:tests? conditional.
Delete unnecessary 'build' phase. Move portability environment variable
before check phase.
2017-05-12 15:00:59 +02:00
Marius Bakke ae836e513e
gnu: cryptsetup: Update to 1.7.5.
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.5.
2017-05-12 13:47:26 +02:00
Marius Bakke 0ed81d0476
gnu: kbd: Set home page to kbd-project.org.
* gnu/packages/linux.scm (kbd)[home-page]: Update.
2017-05-12 13:44:27 +02:00
Marius Bakke aa9c221f74
gnu: psmisc: Update to 22.21.
* gnu/packages/linux.scm (psmisc): Update to 22.21.
[home-page]: Update.
2017-05-12 13:44:27 +02:00
Ludovic Courtès b9048a14b1
gnu: proot: Add statically-linked variant.
* gnu/packages/linux.scm (proot-static): New variable.
2017-05-12 13:31:35 +02:00
Ludovic Courtès 602db62c7c
gnu: talloc: Add static variant.
* gnu/packages/samba.scm (talloc/static): New variable.
2017-05-12 13:31:34 +02:00
Clément Lassieur 864704212f
gnu: emacs-ag: Propagate the-silver-searcher.
This allows emacs-ag to be used on remote systems.

* gnu/packages/emacs.scm (emacs-ag)[inputs]: Remove.  Move THE-SILVER-SEARCHER
to...
[propagated-inputs]: ... here.
[arguments]: Remove 'patch-exec-paths' phase.
2017-05-12 10:38:42 +02:00
Marius Bakke d231fe0a9b
gnu: miniupnpc: Fix CVE-2017-8798.
* gnu/packages/patches/miniupnpc-CVE-2017-8798.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/upnp.scm (miniupnpc)[source]: Use it.
2017-05-12 00:40:28 +02:00
Marius Bakke 2253477e6f
gnu: cryptsetup-static: Fix FTBFS with lvm2-static@2.02.171.
* gnu/packages/cryptsetup.scm (cryptsetup-static)[arguments]<#:configure-flags>:
Add "-lm" to LIBS.
2017-05-11 23:51:53 +02:00
Ludovic Courtès d5e7d014dd
gnu: lxde-common: Provide 'startlxde' with the 'lxsession' file name.
Fixes <https://bugs.gnu.org/26688>.

* gnu/packages/lxde.scm (lxde-common)[arguments, inputs]: New fields.
2017-05-11 23:31:28 +02:00