nixo
/
guix-devel
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity
36,332 Commits
1 Branch
0 Tags
104 MiB
Commit Graph

29135 Commits (3d3daf7fa1794c64914ed53e51838a41d9b7adc4)

Author SHA1 Message Date
Alex Vong 33428d1267
gnu: javacc: Bootstrap from javacc-4 instead of bootstrap binary. 
* gnu/packages/java.scm (javacc)[source](snippet): Delete bootstrap binary.
[arguments]: Set 'bootstrap-jar' path.
[native-inputs]: Add 'javacc-4'.
 2018-10-18 14:59:55 +02:00
Alex Vong 6662d65f96
gnu: javacc: Use snippet to delete bundled jars. 
* gnu/packages/java.scm (javacc-4)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase and add 'delete-tests'
phase.
* gnu/packages/java.scm (javacc)[source](snippet, modules): New fields.
[arguments]: Remove 'delete-bundled-libs' phase.
 2018-10-18 14:59:52 +02:00
Alex Vong 53fb0476ec
gnu: javacc: 'javacc' now inherits from 'javacc-4'. 
* gnu/packages/java.scm (javacc, javacc-4): 'javacc' now inherits from
'javacc-4' instead of the opposite around.
 2018-10-18 14:59:44 +02:00
Kei Kebreau b286e3b368
gnu: retux: Update to 1.3.6. 
* gnu/packages/games.scm (retux): Update to 1.3.6.
 2018-10-17 17:04:27 -04:00
Kei Kebreau 0592db2873
gnu: wesnoth: Update to 1.14.5. 
* gnu/packages/games.scm (wesnoth): Update to 1.14.5.
 2018-10-17 16:27:38 -04:00
Marius Bakke 16f14f63db
gnu: Python: Adjust grafts for core-updates merge. 
This adjust the grafts from a55ebe2e3a and
90aeaee861 to apply to Python 2.7.15 and 3.7.0.

* gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/python.scm (python-2/fixed): Remove patches that are already
present in 2.7.15.
(python-3/fixed): Remove obsolete phase.
 2018-10-17 20:53:24 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Marius Bakke a55ebe2e3a
gnu: python2: Add upstream security fixes. 
This addresses CVE-2018-{1060,1061,14647,1000802}.

* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
 2018-10-17 20:34:37 +02:00
Marius Bakke 90aeaee861
gnu: python: Fix CVE-2018-14647. 
* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
 2018-10-17 20:34:37 +02:00
Efraim Flashner 1d43756107
gnu: strace: Check before enabling personalities. 
* gnu/packages/linux.scm (strace)[arguments]: Add configure flag to
check for personality support.
 2018-10-17 21:28:05 +03:00
Kei Kebreau 82402f76be
gnu: hyperrogue: Update to 10.4t. 
* gnu/packages/games.scm (hyperrogue): Update to 10.4t.
[arguments]: Modify 'make-flags'. Modify 'configure' and 'install' phases.
 2018-10-17 13:47:41 -04:00
Efraim Flashner fb3ff265cd
gnu: python-icalendar: Update to 4.0.3. 
* gnu/packages/python.scm (python-icalendar): Update to 4.0.3.
 2018-10-17 11:40:08 +03:00
Pierre Neidhardt 05f8943f04
gnu: emacs-helm-system-packages: Add recutils to inputs. 
* gnu/packages/emacs.scm (emacs-helm-system-packages)[inputs]: Use recutils.
 2018-10-17 10:37:35 +02:00
Efraim Flashner 15b283e712
gnu: streamlink: Update to 0.14.2. 
* gnu/packages/video.scm (streamlink): Update to 0.14.2.
[source]: Download from pypi.
 2018-10-17 11:24:18 +03:00
Efraim Flashner da39ff5898
gnu: boost-for-mysql: Remove unnecessary phase. 
* gnu/packages/boost.scm (boost-for-mysql)[arguments]: Remove custom
'provide-libboost_python phase. Add removed '/bin/sh' substitution.
 2018-10-17 10:55:26 +03:00
Maxim Cournoyer 24220e0f09
gnu: emacs-nodejs-repl: Update to 0.2.0. 
* gnu/packages/emacs.scm (emacs-nodejs-repl): Update to 0.2.0.
 2018-10-16 23:02:50 -04:00
Eric Bavier 6f1ce09d79
gnu: Add guix-minimal. 
* gnu/packages/guile.scm (guile-2.0.13): New variable.
* gnu/packages/package-management.scm (guix)[arguments]: Adjust 'wrap-program'
phase to handle "missing" inputs.
(guix-minimal): New variable.
 2018-10-16 17:09:15 -05:00
Eric Bavier c8e3651a82
gnu: guile2.0-guix: Fix build. 
* gnu/packages/gnupg.scm (guile2.0-gcrypt): New variable.
* gnu/packages/guile.scm (guile2.0-sqlite3): New variable.
* gnu/packages/package-management.scm (guile2.0-guix)[propagated-inputs]: Use
them.
 2018-10-16 17:09:15 -05:00
Leo Famulari 02d5ed4a27
gnu: GStreamer plugins: Update MP3 features for GStreamer 1.14. 
GStreamer moved all MPEG-1 audio (mp1, mp2, and mp3) decoders and encoders to
the group of "good" plugins in GStreamer 1.14.0. See the 'NEWS' file for more
information.

* gnu/packages/gstreamer.scm (gst-plugins-ugly)[inputs]: Remove lame, mpg123,
and twolame.
(gst-plugins-bad): Remove mpg123.
(gst-plugins-good): Add lame, mpg123, and twolame.
 2018-10-16 13:40:14 -04:00
Marius Bakke 56112a577c
gnu: perl-unicode-utf8: Disable tests on 32-bit systems. 
* gnu/packages/perl.scm (perl-unicode-utf8)[arguments]: New field.
 2018-10-16 16:49:08 +02:00
Marius Bakke 29e53b446c
gnu: libinput: Update to 1.12.1. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.12.1.
 2018-10-16 16:49:08 +02:00
Marius Bakke 08f535eb2d
gnu: chez: Adjust to zlib static output. 
* gnu/packages/chez.scm (chez-scheme)[inputs]: Add ZLIB:STATIC.
[arguments]: Reference libz.a from that instead of ZLIB.
 2018-10-16 16:49:08 +02:00
Rutger Helling 2d4a753a7c
gnu: xpra: Update to 2.4. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.
 2018-10-16 14:27:28 +02:00
Clément Lassieur f1376bfabe
gnu: emacs-exwm: Update to 0.20. 
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.20.
[source]: Remove emacs-exwm-fix-fullscreen-issue.patch.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: Remove patch.
 2018-10-16 11:10:04 +02:00
Clément Lassieur 503fe87098
gnu: emacs-xelb: Update to 0.16. 
* gnu/packages/emacs.scm (emacs-xelb): Update to 0.16.
 2018-10-16 10:57:53 +02:00
Ludovic Courtès 532f92c8f3
gnu: guix: Update to f9a8fce. 
* gnu/packages/package-management.scm (guix): Update to f9a8fce.
 2018-10-15 23:54:20 +02:00
Efraim Flashner 1a2d8d06b5
* gnu: clang-runtime: Fix typo in patch name. 
This is a follow-up to 0627f93db6.

* gnu/packages/patches/libsantitizer-ustat-fix.patch: Rename to
gnu/packages/patches/libsanitizer-ustat-fix.patch.
* gnu/packages/llvm.scm (clang-runtime@3.7, clang-runtime@3.8,
clang-runtime@3.9)[patches]: Fix patch name.
 2018-10-15 21:51:26 +03:00
Efraim Flashner 0627f93db6
gnu: clang-runtime: Adapt for glibc@2.28. 
* gnu/packages/llvm.scm (clang-runtime@3.7, clang-runtime@3.8,
clang-runtime@3.9)[patches]: Add patch to work around removed ustat.h.
* gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-10-15 21:45:32 +03:00
Efraim Flashner 2ab321ca37
gnu: go@1.4: Add support for aarch64-linux. 
* gnu/packages/golang.scm (go@1.4)[arguments]: Build for armhf-linux
when building for aarch64-linux.
[supported-systems]: Add aarch64-linux.
 2018-10-15 14:21:07 +03:00
Rutger Helling 2c89b4b550
gnu: wine-staging: Update to 3.18. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.18.
* gnu/packages/wine.scm (wine-staging): Update to 3.18.
 2018-10-15 10:50:48 +02:00
Efraim Flashner b7028a16e6
gnu: x265: Fix building on armhf-linux and aarch64-linux. 
* gnu/packages/video.scm (x265)[source]: Update list of patches.
[arguments]: Change configure flag to ensure PIC for all architectures.
* gnu/packages/patches/x265-arm-asm-primitives.patch: Remove file.
* gnu/packages/patches/x265-detect512-all-arches.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update patch registry.
 2018-10-15 11:40:34 +03:00
Ludovic Courtès 68b0226b2a
gnu: gcal: Apply Gnulib fixes. 
* gnu/packages/gcal.scm (gcal)[modules, snippet]: New fields.
 2018-10-15 10:39:45 +02:00
Ludovic Courtès f1a9c6e581
gnu: lsof: Fix builds on glibc 2.28. 
* gnu/packages/lsof.scm (lsof)[arguments]: In 'disable-failing-tests',
add 'substitute*' use for "tests/LTlib.c".
 2018-10-15 10:31:24 +02:00
Tobias Geerinckx-Rice 2d5fa80e83
gnu: audacity: Update home page. 
* gnu/packages/audio.scm (audacity)[home-page]: Update.
 2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice e02013b7de
gnu: hexchat: Use HTTPS home page. 
* gnu/packages/messaging.scm (hexchat)[home-page]: Use HTTPS.
 2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice 4a147986a0
gnu: haveged: Teach the controversy. 
* gnu/packages/linux.scm (haveged)[description]: Suggest adding
additional entropy sources.
 2018-10-15 06:19:38 +02:00
Tobias Geerinckx-Rice dfe05297f3
gnu: x265: Update to 2.9. 
* gnu/packages/video.scm (x265): Update to 2.9.
[source]: Remove x265-fix-ppc64le-build.patch.
* gnu/packages/patches/x265-fix-ppc64le-build.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 4702d45280
gnu: opensm: Update to 3.3.21. 
* gnu/packages/fabric-management.scm (opensm): Update to 3.3.21.
[source]: Update tarball URI.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Rename 'doc' phase to 'install-doc'.
Omit AUTHORS and ChangeLog files. They are more than a decade old.
 2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 9cac043cc0
gnu: restic: Update to 0.9.3. 
* gnu/packages/backup.scm (restic): Update to 0.9.3.
[arguments]: Disable 'restic self-update'.
 2018-10-15 06:19:37 +02:00
Tobias Geerinckx-Rice 3a6e1fe8c8
gnu: perl-xml-feed: Update to 0.55. 
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.55.
 2018-10-15 06:19:36 +02:00
Maxim Cournoyer 66a9f08bb9
gnu: Add python-falcon-cors. 
* gnu/packages/python-web.scm (python-falcon-cors): New variable.
 2018-10-14 22:50:27 -04:00
Maxim Cournoyer bb840999c8
gnu: Add python-falcon. 
* gnu/packages/python-web.scm (python-falcon): New variable.
 2018-10-14 22:02:40 -04:00
Maxim Cournoyer 0731fc1ce7
gnu: python-mimeparse: Update to 1.6.0. 
* gnu/packages/python.scm (python-mimeparse): Update to 1.6.0.
[phases]: Enable tests with a custom check phase.
 2018-10-14 22:02:40 -04:00
Mark H Weaver 614f49c49a
gnu: linux-libre: Update to 4.18.14. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.14.
(%linux-libre-hash): Update hash.
 2018-10-14 19:27:46 -04:00
Mark H Weaver b0fe6b5785
gnu: linux-libre@4.14: Update to 4.14.76. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.76.
(%linux-libre-4.14-hash): Update hash.
 2018-10-14 19:13:56 -04:00
Mark H Weaver f266e82ad2
gnu: linux-libre@4.9: Update to 4.9.133. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.133.
 2018-10-14 19:09:24 -04:00
Mark H Weaver 2dd1bfcb58
gnu: linux-libre@4.4: Update to 4.4.161. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.161.
 2018-10-14 19:07:35 -04:00
Efraim Flashner c2397a8695
gnu: gdk-pixbuf: Increase test timeout. 
* gnu/packages/gtk.scm (gdk-pixbuf)[arguments]: Increase test timeout.
 2018-10-14 11:04:40 +03:00
Efraim Flashner 89f9df6cfd
gnu: icecat: Build with rust-1.24. 
* gnu/packages/gnuzilla.scm (icecat)[native-inputs]: Use the oldest
compatable rust over newer releases when building icecat.
 2018-10-14 09:42:54 +03:00
Brett Gilio 40f856fae8
gnu: csound: Update to 6.11.0. 
* gnu/packages/audio.scm (csound): Update to 6.11.0.
[home-page]: Change to "https://csound.com/".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-14 10:52:12 +08:00
Leo Famulari d7814696b8
gnu: python-configargparse: Use pypi-uri. 
* gnu/packages/python.scm (python-configargparse,
python2-configargparse)[source]: Use pypi-uri.
 2018-10-12 23:42:43 -04:00
Leo Famulari f1be3735db
gnu: khal: Update to 0.9.10. 
* gnu/packages/calendar.scm (khal): Update to 0.9.10.
 2018-10-12 23:42:43 -04:00
Leo Famulari 3c4d307e86
gnu: python-icalendar: Update to 4.0.2. 
* gnu/packages/python.scm (python-icalendar: Update to 4.0.2.
 2018-10-12 23:42:43 -04:00
Leo Famulari 3584eeb9a1
gnu: ImageMagick: Update to 6.9.10-12. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-12.
 2018-10-12 23:42:39 -04:00
Leo Famulari a60e868629
gnu: Wireshark: Update to 2.6.4 [fixes CVE-2018-{12086,18225,18226,18227}]. 
* gnu/packages/networking.scm (wireshark): Update to 2.6.4.
 2018-10-12 22:18:22 -04:00
宋文武 6826f1e1ed
gnu: Add libpd. 
* gnu/packages/music.scm (libpd): New variable.
 2018-10-12 22:23:58 +08:00
Christopher Baines 50135ff896
gnu: Remove duplicate ruby-yard package definition. 
* gnu/packages/ruby.scm (ruby-yard): Remove one of the two package
definitions, and update the other to the latest release.
 2018-10-12 08:23:17 +01:00
Christopher Baines e9ab649e1e
gnu: Remove duplicate ruby-concurrent package definition. 
* gnu/packages/ruby.scm (ruby-concurrent): Remove one of the two definitions
for this variable.
 2018-10-12 08:23:15 +01:00
Vagrant Cascadian e1d1ec1435
gnu: u-boot: Update to 2018.09. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2018.09.
(u-boot-tools)[arguments]: Substitute "coverage" for "python-coverage". Update
workaround for only 99% test coverage.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-10-11 17:28:53 -04:00
Brett Gilio fc346e30a0
gnu: godot: Update to 3.0.6. 
* gnu/packages/game-development.scm (godot): Update to 3.0.6.
 2018-10-11 16:42:04 -04:00
Efraim Flashner 0ea6af996b
gnu: python-testtools: Fix regression in test suite. 
* gnu/packages/check.scm (python-testtools)[source]: Add patch.
* gnu/packages/patches/python-testtools.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-10-11 22:34:20 +03:00
Efraim Flashner fd15eb286e
gnu: python-more-itertools: Fix building on 32-bit architectures. 
* gnu/packages/python.scm (python-more-itertools)[arguments]: Add a
custom phase to prevent overflowing on 32-bit architectures.
 2018-10-11 20:55:44 +03:00
Leo Famulari 3bee949b03
gnu: Krita: Update to 4.1.5. 
* gnu/packages/kde.scm (krita): Update to 4.1.5.
 2018-10-11 13:10:50 -04:00
Ludovic Courtès ed9d7cb4d9
gnu: guix-daemon: Run 'guix' from /var/guix/profiles/per-user/root. 
Fixes <https://bugs.gnu.org/32183>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>
and Konrad Hinsen <konrad.hinsen@fastmail.net>.

* gnu/packages/package-management.scm (guix-daemon)[arguments]: Execute
/var/guix/profiles/per-user/root/current-guix/bin/guix instead of ~root/….
 2018-10-11 18:29:11 +02:00
Ricardo Wurmus e8a7eab169
gnu: kallisto: Update to 0.44.0. 
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.44.0.
[source]: Fetch from git.
[arguments]: Add build phase to use htslib from Guix.
[inputs]: Add htslib.
 2018-10-11 16:12:11 +02:00
Ricardo Wurmus a8fa86c477
gnu: Add python-cvxopt. 
* gnu/packages/maths.scm (python-cvxopt, python2-cvxopt): New variables.
 2018-10-11 10:30:30 +02:00
Mark H Weaver 2faf2edf58
gnu: linux-libre: Update to 4.18.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.13.
(%linux-libre-hash): Update hash.
 2018-10-10 23:19:36 -04:00
Mark H Weaver 4f1d7e386b
gnu: linux-libre@4.14: Update to 4.14.75. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.75.
(%linux-libre-4.14-hash): Update hash.
 2018-10-10 23:18:28 -04:00
Mark H Weaver 0e8f0803b5
gnu: linux-libre@4.9: Update to 4.9.132. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.132.
 2018-10-10 23:17:53 -04:00
Mark H Weaver e05fe1f917
gnu: linux-libre@4.4: Update to 4.4.160. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.160.
 2018-10-10 23:17:14 -04:00
Tobias Geerinckx-Rice dc5282f9ea
gnu: hexchat: Update to 2.14.2. 
* gnu/packages/messaging.scm (hexchat): Update to 2.14.2.
 2018-10-11 00:01:44 +02:00
Tobias Geerinckx-Rice 272fc9dca3
gnu: tlp: Return #t from phases. 
* gnu/packages/linux.scm (tlp)[argument]: Return #t all from phases.
 2018-10-11 00:01:44 +02:00
Tobias Geerinckx-Rice 43abffa1a3
gnu: hdparm: Update to 9.56. 
* gnu/packages/linux.scm (hdparm): Update to 9.56.
 2018-10-10 23:49:14 +02:00
Tobias Geerinckx-Rice 50298d4a81
gnu: perftest: Update to 4.4-0.4. 
* gnu/packages/linux.scm (perftest): Update to 4.4-0.4.
 2018-10-10 23:49:14 +02:00
Tobias Geerinckx-Rice b71a34887b
gnu: haveged: Mark up description. 
* gnu/packages/linux.scm (haveged)[description]: Use @dfn{} and
split into two paragraphs.
 2018-10-10 23:49:13 +02:00
Tobias Geerinckx-Rice 893c340c3a
gnu: haveged: Update to 1.9.4. 
* gnu/packages/linux.scm (haveged): Update to 1.9.4.
[source]: Use GIT-FETCH and GIT-FILE-NAME from new (development) home.
 2018-10-10 23:49:13 +02:00
Tobias Geerinckx-Rice f825faa502
gnu: python-pickleshare: Update to 0.7.5. 
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.
 2018-10-10 23:49:13 +02:00
Tobias Geerinckx-Rice 43c97cceae
gnu: ranger: More test tweaks. 
There's no functional difference between 'make test_pytest' and running
'py.test' directly, but there may be in future.

This follows up on commit 14173b3c6765bd8fcb2b12ea28fc27226645c7e1.

* gnu/packages/disk.scm (ranger)[arguments]: Use #:test-target to run
the (same) tests through 'make'.
[native-inputs]: Remove left-over python-flake8 and python-pylint.
 2018-10-10 23:49:13 +02:00
Danny Milosavljevic 47f9fb18a3
gnu: Add kicad-symbols. 
* gnu/packages/engineering.scm (kicad-symbols): New variable.
 2018-10-10 23:04:18 +02:00
Tobias Geerinckx-Rice 3d0fdb34a2
gnu: ranger: Update to 1.9.2. 
* gnu/packages/disk.scm (ranger): Update to 1.9.2.
[native-inputs]: Order alphabetically.
[arguments]: Actually run tests and remove useless #:test-target.
 2018-10-10 22:12:03 +02:00
Tobias Geerinckx-Rice 3820d51bec
Order (gnu packages disk) module imports alphabetically. 
* gnu/packages/disk.scm (define-module): Order module imports
alphabetically.
 2018-10-10 22:12:02 +02:00
Tobias Geerinckx-Rice 1f033795e2
gnu: ndctl: Update to 63. 
* gnu/packages/disk.scm (ndctl): Update to 63.
[source]: Use GIT-FILE-NAME.
[native-inputs]: Add bash-completion.
[arguments]: Add '--disable-asciidoctor' and '--without-systemd'
 #:configure-flags.  Don't bother patching unused ./autogen.sh in
'patch-FHS-file-names' phase.
 2018-10-10 22:12:02 +02:00
Tobias Geerinckx-Rice 4273a7ef65
gnu: libblockdev: Update to 2.20. 
* gnu/packages/disk.scm (libblockdev): Update to 2.20.
[license]: Update to match fixed licence headers.
 2018-10-10 22:12:02 +02:00
Tobias Geerinckx-Rice 8984dbd0de
gnu: volume-key: Update to 0.3.12. 
* gnu/packages/disk.scm (volume-key): Update to 0.3.12.
 2018-10-10 22:12:02 +02:00
Pierre Neidhardt 8f3dc810b1
gnu: emacs-slime: Update to 2.22. 
* gnu/packages/emacs.scm (emacs-slime): Update to 2.22.
 2018-10-10 17:45:07 +02:00
Pierre Neidhardt 3e70c3a06e
gnu: emacs-evil-collection: Update to 0.0.1. 
* gnu/packages/emacs.scm (emacs-evil-collection): Update to 0.0.1.
 2018-10-10 17:43:51 +02:00
Pierre Neidhardt 903378910e
gnu: Add numlockx. 
* gnu/packages/xdisorg.scm (numlockx): New variable.
 2018-10-10 17:32:53 +02:00
Ludovic Courtès 121f32a104
gnu: guile-next: Update to 2.9.1. 
* gnu/packages/guile.scm (guile-next): Update to 2.9.1.
[native-inputs, arguments]: Remove.
[properties]: New field.
 2018-10-10 14:48:46 +02:00
Ludovic Courtès 6b009dbfea
gnu: openal: Update source and home page URLs. 
Fixes <https://bugs.gnu.org/33000>.
Reported by Nam Nguyen <namn@berkeley.edu>.

* gnu/packages/audio.scm (openal)[source, home-page]: Update URLs.
 2018-10-10 14:30:39 +02:00
Ludovic Courtès 296ad59216
gnu: haunt: Make sure Guile-CommonMark and Guile-Reader are always visible. 
* gnu/packages/guile.scm (haunt)[arguments]: In 'wrap-haunt' phase, add
Guile-Reader and Guile-CommonMark to the search paths.
 2018-10-10 13:48:21 +02:00
Mark Meyer a50f5258c7
gnu: Add kdenlive. 
* gnu/packages/kde.scm (kdenlive): New variable.

Co-authored-by: Gábor Boskovits <boskovits@gmail.com>
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2018-10-10 11:11:14 +02:00
Mark Meyer e7cdd311ae
gnu: mlt: Prepare for kdenlive. 
* gnu/packages/video.scm (mlt): Update to 6.10.0.
[inputs]: Add frei0r-plugins, gdk-pixbuf, gtk+-2, qtbase,qtsvg.
[make-flags]: Add "CXX=g++ -std=gnu++11".

Co-authored-by: Gábor Boskovits <boskovits@gmail.com>
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2018-10-10 11:10:46 +02:00
Efraim Flashner 5ff15b86fc
gnu: lisp.scm: Arrange imported modules alphabetically. 
* gnu/packages/lisp.scm: Arrange imported modules alphabetically.
 2018-10-10 10:41:39 +03:00
Efraim Flashner e4c399fe15
gnu: clisp: Update to 2.49.92. 
* gnu/packages/lisp.scm (clisp): Update to 2.49.92.
[source]: Switch to git-fetch. Remove unneeded patch.
[arguments]: Remove '--enable-portability' flag, add CFLAGS for
armhf-linux. Update list of files needing substitutions in custom
'patch-sh-and-pwd phase.
[home-page]: Update to new home-page.
* gnu/packages/patches/clisp-glibc-2.26.patch: Remove file.
& gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-10 10:41:37 +03:00
Rutger Helling 006a1d59ba
gnu: vkd3d: Update to 1.1. 
* gnu/packages/vulkan.scm (vkd3d): Update to 1.1.
 2018-10-10 09:34:09 +02:00
Danny Milosavljevic 9096c00629
gnu: java-w3c-svg: Update synopsis and description. 
* gnu/packages/batik.scm (java-w3c-svg-1.0)[synopsis]: Modify.
[description]: Modify.
(java-w3c-svg)[synopsis]: Modify.
[description]: Modify.
 2018-10-09 21:44:11 +02:00
Danny Milosavljevic b2eda4a55e
gnu: java-w3c-svg: Fix build. 
Reported-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>

* gnu/packages/batik.scm (java-w3c-svg)[arguments]<#:phases>: Delete
"patch-interface" phase.
 2018-10-09 21:44:09 +02:00
Ludovic Courtès 64965a068d
gnu: Add ttf2pt1. 
* gnu/packages/fontutils.scm (ttf2pt1): New variable.
 2018-10-09 18:54:12 +02:00
Efraim Flashner 1fe57b3746
gnu: bs1770gain: Update to 0.5.0. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.0.
 2018-10-09 12:04:34 +03:00
Efraim Flashner 8658b81b1a
gnu: augeas: Update to 1.11.0. 
* gnu/packages/augeas.scm (augeas): Update to 1.11.0.
[source]: Remove snippet.
 2018-10-09 11:01:53 +03:00
Efraim Flashner 8d18edde75
* gnu: agg: Replace bootstrap phase. 
* gnu/packages/graphics.scm (agg)[arguments]: Remove custom 'autoreconf
phase and replace default 'bootstrap phase. Use INVOKE.
[native-inputs]: Remove bash.
 2018-10-09 10:33:07 +03:00
Efraim Flashner 31f45cf7be
gnu: agg: Don't build examples. 
* gnu/packages/graphics.scm (agg)[arguments]: Disable building the
examples.
 2018-10-09 10:33:03 +03:00
Efraim Flashner 07b0662754
gnu: abiword: Remove wmf support. 
* gnu/packages/abiword.scm (abiword)[arguments]: Remove 'wmf' from the
list of enabled plugins.
 2018-10-09 09:56:35 +03:00
Tobias Geerinckx-Rice 3880537c74
gnu: zstd: Don't use unstable tarball. 
* gnu/packages/compression.scm (zstd)[source]: Use release archive.
 2018-10-09 05:47:16 +02:00
Tobias Geerinckx-Rice 317e80cead
gnu: unison: End all phases with #t. 
* gnu/packages/ocaml.scm (unison)[arguments]: End all phases with #t.
 2018-10-09 05:42:14 +02:00
Tobias Geerinckx-Rice f6ccb95a86
gnu: docx2txt: End phases with #t. 
* gnu/packages/textutils.scm (docx2txt)[arguments]: End 'fix-install'
phase with #t.
 2018-10-09 05:42:14 +02:00
Tobias Geerinckx-Rice de68ad095d
gnu: zstd: Update to 1.3.6. 
* gnu/packages/compression.scm (zstd): Update to 1.3.6.
[source]: Remove merged patches.
* gnu/packages/patches/zstd-fix-stdin-list-test.patch,
gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-10-09 05:42:14 +02:00
Thorsten Wilms 65b8d61073
gnu: Add gimp-resynthesizer. 
* gnu/packages/gimp.scm (gimp-resynthesizer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-08 23:19:35 +02:00
Thorsten Wilms df2d77c45f
gnu: Add emacs-colum-marker. 
* gnu/packages/emacs.scm (emacs-colum-marker): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-08 22:55:00 +02:00
pimi b6bd8b108a
gnu: Add filtlong. 
* gnu/packages/bioinformatics.scm (filtlong): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-08 18:32:42 +02:00
Mathieu Lirzin f8e0d27c5c
gnu: emacs-google-translate: Update to 0.11.15. 
* gnu/packages/emacs.scm (emacs-google-translate): Update to 0.11.15.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-08 18:32:42 +02:00
Ludovic Courtès 46e78707a3
gnu: Add font-sil-charis. 
* gnu/packages/fonts.scm (font-sil-charis): New variable.
 2018-10-08 18:32:42 +02:00
Ludovic Courtès 1d6417340d
gnu: Add font-sil-gentium. 
* gnu/packages/fonts.scm (font-sil-gentium): New variable.
 2018-10-08 18:32:42 +02:00
Ricardo Wurmus f6e9976393
gnu: Add r-dnabarcodes. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): New variable.
 2018-10-08 14:19:04 +02:00
Christopher Baines 1deab8cbf6
gnu: Add picard. 
* gnu/packages/music.scm (picard): New variable.
 2018-10-08 07:41:21 +01:00
Ben Woodcroft 402561ccef
gnu: python2-backports-functools-lru-cache: Update to 1.5. 
* gnu/packages/python.scm (python2-backports-functools-lru-cache): Update to 1.5.
 2018-10-08 16:37:03 +10:00
Rutger Helling 5103c98f68
gnu: c-toxcore: Update to 0.2.8. 
* gnu/packages/messaging.scm (c-toxcore): Update to 0.2.8.
 2018-10-08 08:24:50 +02:00
Kei Kebreau a041066374
gnu: crawl, crawl-tiles: Update to 0.22.1. 
* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.22.1.
* gnu/packages/patches/crawl-upgrade-saves.patch: Update accordingly.
 2018-10-07 21:23:09 -04:00
Leo Famulari 0a3e9bf621
gnu: Go 1.9: Fix test failure with binutils >= 2.31. 
* gnu/packages/golang.scm (go-1.9)[arguments]: Add a substitution to the
prebuild phase.
 2018-10-07 21:19:07 -04:00
Leo Famulari e8bd1946ec
Merge branch 'master' into core-updates 2018-10-07 20:49:14 -04:00
Leo Famulari a18accba46
gnu: Remove Go 1.10. 
* gnu/packages/golang.scm (go-1.10): Remove variable.
(go-1.11)[arguments]: Remove unnecessary environment variable from
'set-bootstrap-variables' phase.
 2018-10-07 20:48:30 -04:00
Leo Famulari 68afb9dccf
build-system/glib-or-gtk: Build 'in-source' by default. 
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Change to
'out-of-source? #f'.
* gnu/packages/audio.scm (audacity)[arguments]: Use the default 'out-of-source?'
setting.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
 2018-10-07 16:13:51 -04:00
Leo Famulari cd220e60da
gnu: ncmpc: Update to 0.32. 
* gnu/packages/mpd.scm (ncmpc): Update to 0.32.
[inputs]: Add boost, pcre, and python-sphinx. Remove glib.
[arguments]: Install the man pages correctly. Remove unnecessary configure flag.
 2018-10-07 15:27:20 -04:00
Leo Famulari 247537da81
gnu: borg: The backup client cannot override the server-side storage quota. 
* gnu/packages/patches/borg-respect-storage-quota.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
 2018-10-07 13:57:32 -04:00
Jan Nieuwenhuizen 236fadf528
gnu: mes: Update to 0.18. 
* gnu/packages/patches/mes-nyacc-0.86.0.patch: Removef file.
* gnu/local.mk (dist_patch_DATA): Remove entry.
* gnu/packages/mes.scm (mes): Update to 0.18.
 2018-10-07 16:30:50 +02:00
Jan Nieuwenhuizen 09c5a5680a
gnu: tcc-boot0: Update for mes 0.18. 
* gnu/packages/commencement.scm (tcc-boot0): Update for mes 0.18.
 2018-10-07 16:29:39 +02:00
Jan Nieuwenhuizen fc4ff50f2d
gnu: mescc-tools-boot: Update to 0.5.2. 
* gnu/packages/commencement.scm (mescc-tools-boot): Update to 0.5.2.
* gnu/packages/patches/mescc-tools-boot.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-07 16:29:39 +02:00
Jan Nieuwenhuizen 189ac60eac
gnu: mes-boot0: Update to 0.18 
* gnu/packages/commencement.scm (mes-boot0): Update to 0.18.
 2018-10-07 16:29:38 +02:00
Jan Nieuwenhuizen a52b11a667
gnu: %tinycc-seed: Update for mes 0.18. 
* gnu/packages/bootstrap.scm (%tinycc-seed): Update for mes 0.18.
 2018-10-07 16:29:38 +02:00
Jan Nieuwenhuizen 1b30689343
gnu: %mes-seed: Update to 0.18. 
* gnu/packages/bootstrap.scm (%mes-seed): Update to 0.18.
 2018-10-07 16:29:35 +02:00
Jan Nieuwenhuizen f7a331c068
gnu: %mescc-tools-seed: Update to 0.5.2. 
* gnu/packages/bootstrap.scm (%mescc-tools-seed): Update to 0.5.2.
 2018-10-07 16:27:57 +02:00
Jan Nieuwenhuizen 345fe853c8
gnu: mes: Update to 0.18. 
* gnu/packages/patches/mes-nyacc-0.86.0.patch: Removef file.
* gnu/local.mk (dist_patch_DATA): Remove entry.
* gnu/packages/mes.scm (mes): Update to 0.18.
 2018-10-07 16:27:57 +02:00
Danny Milosavljevic ae6922ed14
gnu: Add java-jakarta-regexp. 
* gnu/packages/java.scm (java-jakarta-regexp): New variable.
 2018-10-07 15:28:37 +02:00
Danny Milosavljevic 12a0b38ce6
gnu: java-xmlgraphics-commons: Add dependency to java-asm. 
* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-asm.
 2018-10-07 14:47:36 +02:00
Danny Milosavljevic 3158425eb8
gnu: java-xmlgraphics-commons: Add dependency to java-cglib. 
* gnu/packages/batik.scm (java-xmlgraphics-commons)[native-inputs]: Add
java-cglib.
 2018-10-07 14:46:26 +02:00
Danny Milosavljevic 05dae40302
gnu: java-xmlgraphics-commons: Make error in tests fail the "check" phase. 
* gnu/packages/batik.scm (java-xmlgraphics-commons)[arguments]<#:test-target>:
Use "junit" test target.
 2018-10-07 14:43:47 +02:00
Danny Milosavljevic 02803fdf45
gnu: java-xmlgraphics-commons: Remove bundled dependencies. 
* gnu/packages/batik.scm (java-xmlgraphics-commons): Remove bundled
dependencies.
 2018-10-07 14:42:57 +02:00
Danny Milosavljevic 52d2725ab1
gnu: Add java-xmlgraphics-commons. 
* gnu/packages/batik.scm (java-xmlgraphics-commons): New variable.
 2018-10-07 14:32:05 +02:00
Danny Milosavljevic 283f57d8fa
gnu: Add java-w3c-sac. 
* gnu/packages/batik.scm (java-w3c-sac): New variable.
 2018-10-07 14:16:01 +02:00
Danny Milosavljevic da99c46f63
gnu: Add java-w3c-svg. 
* gnu/packages/batik.scm (java-w3c-svg-1.0, java-w3c-svg): New variables.
 2018-10-07 14:15:21 +02:00
Danny Milosavljevic 2c4be1add0
gnu: Add java-w3c-smil. 
* gnu/packages/batik.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-10-07 14:14:13 +02:00
fis trivial c8a99ab911
gnu: mercurial: Update to 4.6.2. 
* gnu/packages/version-control.scm (mercurial): Update to 4.6.2.
 2018-10-07 13:02:51 +03:00
宋文武 96808b39e7
gnu: pd: Update to 0.49-0. 
* gnu/packages/music.scm (pd): Update to 0.49-0.
 2018-10-07 15:29:47 +08:00
Tobias Geerinckx-Rice ccfac015bf
gnu: wcslib: Update to 5.20. 
* gnu/packages/astronomy.scm (wcslib): Update to 5.20.
[arguments]: Build parallelly.
 2018-10-06 23:29:31 +02:00
Leo Famulari e90ce11577
gnu: git: Update to 2.19.1 [fixes CVE-2018-17456]. 
* gnu/packages/version-control.scm (git): Update to 2.19.1.
 2018-10-06 04:11:26 -04:00
Ricardo Wurmus d71078bc75
gnu: Add ngless. 
* gnu/packages/bioinformatics.scm (ngless): New variable.
 2018-10-05 23:59:27 +02:00
Ricardo Wurmus b1f9cc88c4
gnu: Add ghc-safeio. 
* gnu/packages/haskell.scm (ghc-safeio): New variable.
 2018-10-05 23:59:27 +02:00
Ricardo Wurmus ea202046fa
gnu: Add ghc-file-embed. 
* gnu/packages/haskell.scm (ghc-file-embed): New variable.
 2018-10-05 23:59:27 +02:00
Ricardo Wurmus c7e400b1ee
gnu: Add ghc-configurator. 
* gnu/packages/haskell.scm (ghc-configurator): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus d453b89944
gnu: Add ghc-bytestring-lexing. 
* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus d9ee3e375c
gnu: Add ghc-inline-c-cpp. 
* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 9ef95a196f
gnu: Add ghc-safe-exceptions. 
* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 88189099df
gnu: Add ghc-inline-c. 
* gnu/packages/haskell.scm (ghc-inline-c): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 52f5114d01
gnu: Add ghc-raw-string-qq. 
* gnu/packages/haskell.scm (ghc-raw-string-qq): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 5e6bf3e2da
gnu: Add ghc-hpack. 
* gnu/packages/haskell.scm (ghc-hpack): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 320323141f
gnu: Add ghc-interpolate. 
* gnu/packages/haskell.scm (ghc-interpolate): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus a933cbfb61
gnu: Add ghc-conduit-algorithms. 
* gnu/packages/haskell.scm (ghc-conduit-algorithms): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 71c2e3e1a1
gnu: Add ghc-pqueue. 
* gnu/packages/haskell.scm (ghc-pqueue): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 4fc161b9c6
gnu: Add ghc-bzlib-conduit. 
* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 44c6180b3f
gnu: Add ghc-lzma-conduit. 
* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 38757d610e
gnu: Add ghc-bindings-dsl. 
* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 80588cfccf
gnu: Add ghc-stm-conduit. 
* gnu/packages/haskell.scm (ghc-stm-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 36ec599e78
gnu: Add ghc-lzma. 
* gnu/packages/haskell.scm (ghc-lzma): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus d05ed20ef1
gnu: Add ghc-cereal-conduit. 
* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
 2018-10-05 23:59:26 +02:00
Ricardo Wurmus 6c8197783d
gnu: Add ghc-atomic-write. 
* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus 562cfae330
gnu: Add ghc-chart-cairo. 
* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus 7df25c77c5
gnu: Add ghc-cairo. 
* gnu/packages/haskell.scm (ghc-cairo): New variable.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus 279c97dba8
gnu: ghc-regex: Fix build. 
* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
 2018-10-05 23:59:25 +02:00
Ricardo Wurmus a45c64701b
gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs. 
* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
 2018-10-05 23:59:25 +02:00
Christopher Baines 11ff2adc74
gnu: ruby-sass: Update to 3.6.0. 
* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
 2018-10-05 21:25:42 +01:00
Christopher Baines 4d372cb9a2
gnu: Add ruby-mathn. 
* gnu/packages/ruby.scm (ruby-mathn): New variable.
 2018-10-05 21:25:42 +01:00
Christopher Baines 2c7cb711e9
gnu: ruby-sass-spec: Fix spec expectation. 
This fixes building ruby-sass with Ruby 2.5.

* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
 2018-10-05 21:25:42 +01:00
Christopher Baines 39ecb977d3
gnu: ruby-term-ansicolor: Fix test for Ruby 2.5. 
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
 2018-10-05 21:25:41 +01:00
Christopher Baines 0b060e3486
gnu: ruby-shindo: Remove -rubygems flags. 
These have been removed in Ruby 2.5.

* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
 2018-10-05 21:25:41 +01:00
Christopher Baines 357450dca0
gnu: bioruby: Update to 1.5.2. 
This works with Ruby 2.5.

* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
 2018-10-05 21:25:39 +01:00
Kei Kebreau b0e829c632
gnu: gnucash-docs: Update to 3.3. 
The documentation on SourceForge is now located in the same directory as the
source code.

* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
 2018-10-05 14:28:44 -04:00
Kei Kebreau 73ca145a7e
gnu: gnucash: Update to 3.3. 
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
 2018-10-05 13:41:08 -04:00
Tobias Geerinckx-Rice fc4738149f
gnu: Add bastet. 
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-05 19:32:45 +02:00
Tobias Geerinckx-Rice b008a12ae7
gnu: fdroidserver: Update to 1.0.10. 
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice 8713c03e55
gnu: audacity: Don't use unstable tarball. 
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice 3f90445692
gnu: filezilla: Update to 3.37.4. 
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice 38aca674c3
gnu: libfilezilla: Update to 0.14.0. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
 2018-10-05 19:30:08 +02:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Marius Bakke e65b2181e8
gnu: icu4c: Skip tests on i686. 
* gnu/packages/icu4c.scm (icu4c)[arguments]: On i686-linux, set #:tests? #f.
 2018-10-05 19:05:39 +02:00
Ricardo Wurmus a6798218be
gnu: samtools-0.1: Adjust to match changes in samtools. 
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 8e72f0f319
gnu: deeptools: Update to 3.1.2. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 939882f734
gnu: python-pysam: Update to 0.15.1. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs. 
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus f79b59e311
gnu: bcftools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 4ae4a15232
gnu: samtools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus bd5f5eece9
gnu: htslib: Update to 1.9. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
 2018-10-05 09:21:50 +02:00
Mark H Weaver 4a5e2a90d8
gnu: icecat: Add fixes from mozilla-esr60 [security fixes]. 
Includes fixes for CVE-2018-12386 and CVE-2018-12387.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
 2018-10-04 21:35:01 -04:00
Mark H Weaver 2e073dc23c
gnu: linux-libre: Update to 4.18.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
 2018-10-04 20:36:32 -04:00
Mark H Weaver 2195636cc1
gnu: linux-libre@4.14: Update to 4.14.74. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
 2018-10-04 20:36:30 -04:00
Mark H Weaver 45f4ddd7c0
gnu: linux-libre@4.9: Update to 4.9.131. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
 2018-10-04 20:36:28 -04:00
Paul Garlick 9e2aa70bad
gnu: petsc-openmpi: Configure with support for MUMPS solver. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags.  Move 'mpi-setup' phase
ahead of 'configure' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-10-04 18:21:17 -04:00
Tobias Geerinckx-Rice d8b042326d
gnu: hiawatha: Set sane run-time directory defaults. 
* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.
 2018-10-04 21:28:24 +02:00
Tobias Geerinckx-Rice b9b53fb4ff
gnu: hwloc: Update to 2.0.2. 
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
 2018-10-04 21:28:24 +02:00
Tobias Geerinckx-Rice 7382ecd818
gnu: Add nsd. 
* gnu/packages/dns.scm (nsd): New public variable.
 2018-10-04 21:10:34 +02:00
David Thompson 55b616fd15
gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779. 
* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.
 2018-10-04 13:22:02 -04:00