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Author SHA1 Message Date
Mark H Weaver e79b78f1ca
gnu: linux-libre: Update to 5.2.10. 
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.10.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
 2019-08-25 18:26:52 -04:00
Mark H Weaver 0b847656af
gnu: linux-libre@4.19: Update to 4.19.68. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.68.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
 2019-08-25 18:26:12 -04:00
Mark H Weaver 1fda7f42d2
gnu: linux-libre@4.14: Update to 4.14.140. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.140.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
 2019-08-25 18:25:39 -04:00
Mark H Weaver 70c47232fe
gnu: linux-libre@4.9: Update to 4.9.190. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.190.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
 2019-08-25 18:25:05 -04:00
Mark H Weaver fd501b2be6
gnu: linux-libre@4.4: Update to 4.4.190. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.190.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
 2019-08-25 18:24:01 -04:00
Amar Singh 7dff32250b
gnu: shroud: Update to 0.1.2. 
* gnu/packages/password-utils.scm (shroud): Update to 0.1.2.

Shroud now builds with Guile-2.2. Remove hardcoded '2.0' string.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-25 22:48:41 +02:00
ison f9948ab6cb
gnu: Add wterm. 
* gnu/packages/terminals.scm (wterm): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-25 22:48:41 +02:00
Ludovic Courtès 0b859092a7
gnu: ghostscript: Replace with the "fixed" Ghostscript. 
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed)[version]: Remove, to comply with the same-length
constraint of grafts.
 2019-08-25 22:48:40 +02:00
Ludovic Courtès 466ff55c72
gnu: ghostscript: Add a new variant that depends on Freetype. 
Fixes <https://bugs.gnu.org/34877>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>
and sirmacik <sirmacik@wioo.waw.pl>.

* gnu/packages/ghostscript.scm (ghostscript/fixed): New variable.
 2019-08-25 22:48:40 +02:00
Vagrant Cascadian 8c1379ba40
gnu: Update diffoscope to 121. 
* gnu/packages/package-management (diffoscope): Update to 121.
  [version] Only define version once.
  [arguments] Add writeable-test-data phase.
 2019-08-25 12:01:39 -07:00
Pierre Neidhardt 6063a56140
gnu: emacs-slime: Update to 2.24. 
* gnu/packages/emacs-xyz.scm (emacs-slime): Update to 2.24.
 2019-08-25 21:00:06 +02:00
Brian Leung d558700a0c
gnu: emacs-undo-propose-el: Update to 3.0.0-1.21a5cdc. 
* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-1.21a5cdc.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-25 16:48:38 +03:00
Brian Leung 3f13a4ec26
gnu: emacs-helm-swoop: Update to 2.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm-swoop): Update to 2.0.0.
[source]: Use the new url.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-25 16:48:21 +03:00
Brian Leung 72cef4227c
gnu: Add emacs-evil-mc. 
* gnu/packages/emacs-xyz.scm (emacs-evil-mc): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-25 16:24:53 +03:00
Pierre Neidhardt d0480ca1a2
gnu: sbcl: Include source so that standard symbol definitions can be examined. 
* gnu/packages/lisp.scm (sbcl)[arguments]: Add build-source phase to install
source directories "src" and "contrib".
 2019-08-25 12:28:28 +02:00
宋文武 3d76112769
gnu: sysstat: Update to 12.1.6. 
* gnu/packages/linux.scm (sysstat): Update from 11.4.3 to 12.1.6.
 2019-08-25 12:11:15 +08:00
Ludovic Courtès 2cb81e1ebe
gnu: libextractor: Adapt to exiv2 0.27. 
This fixes a compilation error.

* gnu/packages/patches/libextractor-exiv2.patch: New file.
* gnu/packages/gnunet.scm (libextractor)[sources]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-08-24 23:25:39 +02:00
Pierre Neidhardt 0908f93149
gnu: sbcl: Update to 1.5.5. 
* gnu/packages/lisp.scm (sbcl): Update to 1.5.5.
 2019-08-24 18:43:03 +02:00
Pierre Neidhardt 5c8b9a4381
gnu: sbcl: Enable core compression and xref for internals. 
* gnu/packages/lisp.scm (sbcl): Do it.
 2019-08-24 18:25:53 +02:00
Nicolas Goaziou 9e4422d683
gnu: Add rust-wasi. 
* gnu/packages/crates-io.scm (rust-wasi): New variable.
 2019-08-24 16:58:05 +02:00
Nicolas Goaziou fc4a035445
gnu: Add rust-num-integer. 
* gnu/packages/crates-io.scm (rust-num-integer): New variable.
 2019-08-24 16:58:05 +02:00
Nicolas Goaziou 03551c17de
gnu: Add rust-num-traits. 
* gnu/packages/crates-io.scm (rust-num-traits): New variable.
 2019-08-24 16:58:04 +02:00
Nicolas Goaziou 9119f7aba8
gnu: Add rust-libc. 
* gnu/packages/crates-io.scm (rust-libc): New variable.
 2019-08-24 16:58:04 +02:00
Nicolas Goaziou 52e7295fc1
gnu: Add fet. 
* gnu/packages/education.scm (fet): New variable.
 2019-08-24 16:52:02 +02:00
Rutger Helling 7929f1f530
gnu: wine: Update to 4.0.2. 
* gnu/packages/wine.scm (wine): Update to 4.0.2.
 2019-08-24 11:56:32 +02:00
Tobias Geerinckx-Rice fdfad2fc4e
gnu: python-twisted: Update to 19.7.0. 
* gnu/packages/python-xyz.scm (python-twisted): Update to 19.7.0.
 2019-08-24 04:56:08 +02:00
Tobias Geerinckx-Rice b380463b50
gnu: certbot: Don't use NAME in source URI. 
* gnu/packages/tls.scm (certbot)[source]: Hard-code NAME.
 2019-08-24 04:56:08 +02:00
Tobias Geerinckx-Rice 70fcf8167e
gnu: python-acme: Update to 0.37.2. 
* gnu/packages/tls.scm (python-acme): Update to 0.37.2.
 2019-08-24 04:56:08 +02:00
Tobias Geerinckx-Rice 8a8e449147
gnu: python-pyscard: Update to 1.9.9. 
* gnu/packages/security-token.scm (python-pyscard): Update to 1.9.9.
 2019-08-24 04:56:08 +02:00
Tobias Geerinckx-Rice d5be746a85
gnu: python-pyodbc: Update to 4.0.27. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.27.
 2019-08-24 04:56:08 +02:00
宋文武 cd4fec577c
gnu: go-ipfs: Update to 0.4.22. 
* gnu/packages/ipfs.scm (go-ipfs): Update from 0.4.19 to 0.4.22.
 2019-08-24 10:45:48 +08:00
Giacomo Leidi 64fa66ba3d
gnu: libdazzle: Update to 3.33.90. 
* gnu/packages/gnome.scm (libdazzle): Update to 3.33.90.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-23 23:39:22 +02:00
Brian Leung a9e2de7e3a
gnu: Add ruby-solargraph. 
* gnu/packages/ruby.scm (ruby-solargraph): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-23 23:39:22 +02:00
Brian Leung 7bddb6aa53
gnu: Add ruby-htmlentities. 
* gnu/packages/ruby.scm (ruby-htmlentities): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-23 23:39:22 +02:00
Brian Leung 9e065a8aa2
gnu: Add ruby-reverse-markdown. 
* gnu/packages/ruby.scm (ruby-reverse-markdown): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-23 23:39:21 +02:00
Brian Leung ab8c52a219
gnu: ruby-nokogiri: Update to 1.10.4. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.10.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-23 23:39:21 +02:00
Brian Leung 99d17bb553
gnu: ruby-simplecov: Update to 0.17.0. 
* gnu/packages/ruby.scm (ruby-simplecov): Update to 0.17.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-23 23:39:21 +02:00
Brian Leung a88ac044bc
gnu: ruby-mini-portile-2: Update to 2.4.0. 
* gnu/packages/ruby.scm (ruby-mini-portile-2): Update to 2.4.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-23 23:39:21 +02:00
Ludovic Courtès a9f3396014
gnu: jube: Fix license. 
* gnu/packages/python-xyz.scm (jube)[license]: Change to GPL3+.
 2019-08-23 23:39:21 +02:00
Tobias Geerinckx-Rice 8d515ce6e9
gnu: foomatic-filters: Don't use NAME in source URI. 
* gnu/packages/cups.scm (foomatic-filters)[source]: Hard-code NAME.
 2019-08-23 22:35:38 +02:00
Tobias Geerinckx-Rice b1bd6b54b1
gnu: foo2zjs: Update to 20190517. 
The (unversioned) tarball was modified to replace mention of ‘yum’
with ‘dnf’.

* gnu/packages/cups.scm (foo2zjs): Update to 20190517.
 2019-08-23 22:35:38 +02:00
Tobias Geerinckx-Rice d9d1421a4f
gnu: parallel: Update to 20190822. 
* gnu/packages/parallel.scm (parallel): Update to 20190822.
 2019-08-23 22:35:38 +02:00
Ludovic Courtès 9dd5f47528
gnu: Add JUBE. 
* gnu/packages/python-xyz.scm (jube): New variable.

Co-authored-by: Florent Pruvost <florent.pruvost@inria.fr>
 2019-08-23 18:41:49 +02:00
Brian Leung d78bc23411
gnu: Add emacs-ample-regexps. 
* gnu/packages/emacs-xyz.scm (emacs-ample-regexps): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-23 06:21:12 +03:00
Mark H Weaver 0ccc9a0f5b
gnu: isc-dhcp: Update bundled BIND to 9.11.10. 
* gnu/packages/admin.scm (isc-dhcp)[bind-patch-version]: Update to 10.
[inputs]: Update hash of bind-source-tarball.
 2019-08-22 15:50:14 -04:00
Pierre Langlois 47c95c94b4
gnu: Add emacs-mu4e-patch. 
* gnu/packages/emacs-xyz.scm (emacs-mu4e-patch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-22 17:59:31 +02:00
Pierre Langlois 46c1193a29
gnu: Add emacs-mu4e-jump-to-list. 
* gnu/packages/emacs-xyz.scm (emacs-mu4e-jump-to-list): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-22 17:59:31 +02:00
Timotej Lazar 5094da0b83
gnu: Add reaver. 
* gnu/packages/networking.scm (reaver): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-22 17:59:30 +02:00
Timotej Lazar a83e2a01fb
gnu: Add pixiewps. 
* gnu/packages/networking.scm (pixiewps): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-22 17:59:30 +02:00
Reza Alizadeh Majd 403b4e0685
gnu: Add lxqt-archiver. 
* gnu/packages/lxqt.scm (lxqt-archiver): New Variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-22 17:59:30 +02:00
swedebugia af01292277
gnu: Add bitcoin-abc. 
* gnu/packages/finance.scm (bitcoin-abc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-22 17:59:30 +02:00
Ludovic Courtès 6d0fb469ed
gnu: freeipmi: Update to 1.6.4. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.4.
 2019-08-22 17:59:30 +02:00
Leo Famulari ad64f271de
gnu: vidstab: Update to 1.1.0-0.aeabc8d. 
* gnu/packages/video.scm (vidstab): Update to 1.1.0-0.aeabc8d.
 2019-08-22 11:49:02 -04:00
Tobias Geerinckx-Rice f5111b4d2b
gnu: Add zutils. 
* gnu/packages/compression.scm (zutils): New public variable.
 2019-08-22 15:37:47 +02:00
Tobias Geerinckx-Rice ff452beac5
gnu: mupen64plus-ui-console: Correct synopsis. 
* gnu/packages/emulators.scm (mupen64plus-ui-console)[synopisis]: Correct.
 2019-08-22 15:37:46 +02:00
Tobias Geerinckx-Rice e8079ba403
gnu: mupen64plus-ui-console: Use HTTPS home page. 
* gnu/packages/emulators.scm (mupen64plus-ui-console)[home-page]: Use HTTPS.
 2019-08-22 15:37:46 +02:00
Tobias Geerinckx-Rice 15783008ca
gnu: whois: Update to 5.5.1. 
* gnu/packages/networking.scm (whois): Update to 5.5.1.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice cc08576d9b
gnu: whois: Don't use NAME in source URI. 
* gnu/packages/networking.scm (whois)[source]: Hard-code NAME.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice d4ae72af47
gnu: mpd: Update to 0.21.14. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.14.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice 1f10e3695c
gnu: nsd: Update to 4.2.2. 
* gnu/packages/dns.scm (nsd): Update to 4.2.2.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice 76eb007990
gnu: shellcheck: Update to 0.7.0. 
* gnu/packages/haskell.scm (shellcheck): Update to 0.7.0.
[inputs]: Add ghc-diff.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice 29b60130d8
gnu: chafa: Update to 1.2.1. 
* gnu/packages/image-viewers.scm (chafa): Update to 1.2.1.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice 7323def37d
gnu: nnn: Update to 2.6. 
* gnu/packages/admin.scm (nnn): Update to 2.6.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice 23503abbc0
gnu: python-redis: Update to 3.3.8. 
* gnu/packages/databases.scm (python-redis): Update to 3.3.8.
 2019-08-22 15:35:32 +02:00
Tobias Geerinckx-Rice 524c0ece8e
gnu: bind: Update to 9.14.5. 
* gnu/packages/dns.scm (isc-bind): Update to 9.14.5.
 2019-08-22 11:53:37 +02:00
Tobias Geerinckx-Rice 3251c628f7
gnu: ccache: Update to 3.6. 
* gnu/packages/ccache.scm (ccache): Update to 3.6.
 2019-08-22 00:25:40 +02:00
Tobias Geerinckx-Rice d0d54a61d3
gnu: lsyncd: Search $PATH for binaries. 
* gnu/packages/sync.scm (lsyncd)[arguments]: Add
‘search-$PATH-for-binaries’ phase.
 2019-08-21 23:52:47 +02:00
Tobias Geerinckx-Rice 35805bff9f
gnu: hcxdumptool: Update to 5.2.0. 
* gnu/packages/networking.scm (hcxdumptool): Update to 5.2.0.
 2019-08-21 23:52:47 +02:00
Tobias Geerinckx-Rice 28553e17fd
gnu: hcxtools: Update to 5.2.0. 
* gnu/packages/networking.scm (hcxtools): Update to 5.2.0.
 2019-08-21 23:52:47 +02:00
Tobias Geerinckx-Rice d1aca5b037
gnu: tmux: Update to 2.9a. 
* gnu/packages/tmux.scm (tmux): Update to 2.9a.
 2019-08-21 23:52:47 +02:00
Tobias Geerinckx-Rice b5b4d91251
gnu: tmux: Use HTTPS home page. 
* gnu/packages/tmux.scm (tmux)[home-page]: Use HTTPS.
 2019-08-21 23:52:47 +02:00
Tobias Geerinckx-Rice f8719b155e
gnu: fluidsynth: Update to 2.0.6. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.6.
 2019-08-21 22:07:21 +02:00
Tobias Geerinckx-Rice 94781b79ad
gnu: fluidsynth: Use GIT-FILE-NAME. 
* gnu/packages/audio.scm (fluidsynth)[source]: Use GIT-FILE-NAME.
 2019-08-21 22:07:21 +02:00
Tobias Geerinckx-Rice 88e903a5f1
gnu: getmail: Update to 5.14. 
* gnu/packages/mail.scm (getmail): Update to 5.14.
 2019-08-21 22:07:21 +02:00
Tobias Geerinckx-Rice 7e14ed93f5
gnu: getmail: Don't use NAME in source URI. 
* gnu/packages/mail.scm (getmail)[source]: Hard-code NAME.
 2019-08-21 22:07:20 +02:00
Tobias Geerinckx-Rice 240d9ef9a0
gnu: libabw: Don't use NAME in source URI. 
* gnu/packages/libreoffice.scm (libabw)[source]: Hard-code NAME.
 2019-08-21 22:07:20 +02:00
Tobias Geerinckx-Rice 4bad41e015
gnu: pd: Update to 0.50-0. 
* gnu/packages/music.scm (pd): Update to 0.50-0.
 2019-08-21 22:07:20 +02:00
Tobias Geerinckx-Rice 8ce1b78b5b
gnu: setbfree: Update to 0.8.9. 
* gnu/packages/music.scm (setbfree): Update to 0.8.9.
 2019-08-21 22:07:20 +02:00
Tobias Geerinckx-Rice 074dd909a2
gnu: manaplus: Use HTTPS origin & home page. 
* gnu/packages/games.scm (manaplus)[source, home-page]: Use HTTPS.
 2019-08-21 22:07:13 +02:00
Tobias Geerinckx-Rice 2b744c21cb
gnu: manaplus: Update to 1.9.3.23. 
* gnu/packages/games.scm (manaplus): Update to 1.9.3.23.
 2019-08-21 22:07:13 +02:00
Tobias Geerinckx-Rice 3596b994e8
gnu: xlockmore: Don't use NAME in source URI. 
* gnu/packages/xdisorg.scm (xlockmore)[source]: Hard-code NAME.
 2019-08-21 22:07:13 +02:00
Tobias Geerinckx-Rice f98d66f3c6
gnu: xlockmore: Update to 5.58. 
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.58.
 2019-08-21 22:07:13 +02:00
Tobias Geerinckx-Rice e5e2481912
gnu: angband: Update to 4.2.0. 
* gnu/packages/games.scm (angband): Update to 4.2.0.
 2019-08-21 22:07:13 +02:00
Tobias Geerinckx-Rice d6ce8eca07
gnu: csound: Update to 6.13.0. 
* gnu/packages/audio.scm (csound): Update to 6.13.0.
 2019-08-21 22:07:12 +02:00
Tobias Geerinckx-Rice c17f54e738
gnu: help2man: Update to 1.47.11. 
* gnu/packages/man.scm (help2man/latest): Update to 1.47.11.
 2019-08-21 22:07:12 +02:00
Kei Kebreau 178f1d1f75
gnu: vlc: Update to 3.0.8. 
* gnu/packages/video.scm (vlc): Update to 3.0.8.
 2019-08-21 13:51:06 -04:00
Pierre Neidhardt cad875350b
gnu: emacs-helm-slime: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm-slime): Update to 0.4.0.
 2019-08-21 15:09:15 +02:00
Jelle Licht c8c42d8786
gnu: Add emacs-ssh-config-mode. 
* gnu/packages/emacs-xyz.scm (emacs-ssh-config-mode): New variable.
 2019-08-21 14:15:22 +02:00
Jelle Licht e6b7f90eba
gnu: Add emacs-systemd-mode. 
* gnu/packages/emacs-xyz.scm (emacs-systemd-mode): New variable.
 2019-08-21 14:15:17 +02:00
Jelle Licht 04e748465c
gnu: Add emacs-org-jira. 
* gnu/packages/emacs-xyz.scm (emacs-org-jira): New variable.
 2019-08-21 14:15:12 +02:00
Jelle Licht 0f4e4d8ff0
gnu: Add emacs-org-emms. 
* gnu/packages/emacs-xyz.scm (emacs-org-emms): New variable.
 2019-08-21 14:14:47 +02:00
Jelle Licht 8d3bc0f165
gnu: Add emacs-flyspell-correct. 
* gnu/packages/emacs-xyz.scm (emacs-flyspell-correct): New variable.
 2019-08-21 14:14:29 +02:00
Tobias Geerinckx-Rice eb936efb2a
gnu: opensmtpd-next: Update to 6.4.2p1. 
* gnu/packages/mail.scm (opensmtpd-next): Update to 6.4.2p1.
 2019-08-21 11:52:50 +02:00
Kei Kebreau 439378fd9f
gnu: wxmaxima: Update to 19.08.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.08.0.
 2019-08-20 21:50:30 -04:00
Kei Kebreau 64c70430ec
gnu: gnome-control-center: Fix info-overview panel issues. 
GNOME Control Center should now display the correct GNOME version and graphics
information in the "Details > About" panel.

* gnu/packages/gnome.scm (gnome-control-center)[arguments]: Add configure
flag.  Adjust 'patch-paths' phase accordingly.
[inputs]: Add gnome-session.
 2019-08-20 21:50:29 -04:00
Tobias Geerinckx-Rice 5485148c76
gnu: tor: Update to 0.4.1.5. 
* gnu/packages/tor.scm (tor): Update to 0.4.1.5.
 2019-08-20 22:34:24 +02:00
Efraim Flashner d371112bd0
gnu: edirect: Update to 12.1.20190819. 
* gnu/packages/bioinformatics.scm (edirect): Update to 12.1.20190819.
 2019-08-20 11:08:42 +03:00
Guillaume Le Vaillant f8f2a9449b
gnu: monero: Update to 0.14.1.2. 
* gnu/packages/finance.scm (monero): Update to 0.14.1.2.
[arguments]: Add phase to make files writable for the tests. Enable a
previously skipped test.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-08-20 09:20:19 +03:00
Brian Leung b035a10d58
gnu: emacs-git-timemachine: Update to 4.11. 
* gnu/packages/emacs-xyz.scm (emacs-git-timemachine): Update to 4.11.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-20 08:39:41 +03:00
Nicolas Goaziou dfe8a7048e
gnu: Add python-folium. 
* gnu/packages/python-xyz.scm (python-folium): New variable.
 2019-08-20 01:53:49 +02:00
Nicolas Goaziou 2bdb5716d8
gnu: Add python-branca. 
* gnu/packages/python-web.scm (python-branca): New variable.
 2019-08-20 01:47:27 +02:00
Leo Famulari eaca4d5f86
gnu: Apache httpd: Update to 2.4.41 [security fixes]. 
Fixes CVE-2019-{5917,10081,10082,10092,10097,10098}].

* gnu/packages/web.scm (httpd): Update to 2.4.41.
 2019-08-19 18:01:12 -04:00
Brian Leung eef77fafe3
gnu: Add emacs-org-auto-expand. 
* gnu/packages/emacs-xyz.scm (emacs-org-auto-expand): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-19 23:50:09 +03:00
Brian Leung a030345f0b
gnu: emacs-counsel-etags: Update to 1.8.9. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-etags): Update to 1.8.9.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-19 23:47:54 +03:00
Brian Leung 9b9bfac50d
gnu: emacs-evil-matchit: Update to 2.3.3. 
* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.3.3.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-19 23:47:49 +03:00
Oleg Pykhalov 28bd1b0911
gnu: Add emacs-refactor. 
* gnu/packages/emacs-xyz.scm (emacs-refactor): New variable.
 2019-08-19 23:47:30 +03:00
Leo Famulari 8895b2e0b6
gnu: nmap: Update to 7.80. 
* gnu/packages/admin.scm (nmap): Update to 7.80.
 2019-08-19 13:27:49 -04:00
Ricardo Wurmus a6a19fb14c
gnu: r-gviz: Update to 1.28.1. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.1.
 2019-08-19 16:25:33 +02:00
Ricardo Wurmus 6b28386dd1
gnu: r-citr: Update to 0.3.2. 
* gnu/packages/cran.scm (r-citr): Update to 0.3.2.
 2019-08-19 16:25:33 +02:00
Ricardo Wurmus b3aa0d2f96
gnu: r-ggstance: Update to 0.3.3. 
* gnu/packages/cran.scm (r-ggstance): Update to 0.3.3.
 2019-08-19 16:25:32 +02:00
Ricardo Wurmus 86e243a2e3
gnu: r-rjags: Update to 4-9. 
* gnu/packages/cran.scm (r-rjags): Update to 4-9.
 2019-08-19 16:25:32 +02:00
Ricardo Wurmus bf9a823686
gnu: r-lpsolve: Update to 5.6.13.3. 
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.3.
 2019-08-19 16:25:29 +02:00
Arun Isaac fd88b8e4e8
gnu: rss-bridge: Update to 2019-07-06. 
* gnu/packages/web.scm (rss-bridge): Update to 2019-07-06.
 2019-08-19 16:30:59 +05:30
Brian Leung 41671813f1
gnu: Add emacs-frog-jump-buffer. 
* gnu/packages/emacs-xyz.scm (emacs-frog-jump-buffer): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 21:00:29 +03:00
Brian Leung 317879f555
gnu: Add emacs-frog-menu. 
* gnu/packages/emacs-xyz.scm (emacs-frog-menu): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 21:00:26 +03:00
Brian Leung eff412ed3b
gnu: Add emacs-evil-owl. 
* gnu/packages/emacs-xyz.scm (emacs-evil-owl): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 21:00:21 +03:00
Brian Leung 7fd1495079
gnu: Add emacs-symbol-overlay. 
* gnu/packages/emacs-xyz.scm (emacs-symbol-overlay): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 21:00:11 +03:00
Brian Leung 3eb245434b
gnu: Add emacs-org-now. 
* gnu/packages/emacs-xyz.scm (emacs-org-now): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 20:53:02 +03:00
Brian Leung 3615e9e6c5
gnu: Add emacs-ob-restclient. 
* gnu/packages/emacs-xyz.scm (emacs-ob-restclient): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 20:52:58 +03:00
Brian Leung 64cd8e838a
gnu: Add emacs-org-rich-yank. 
* gnu/packages/emacs-xyz.scm (emacs-org-rich-yank): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 20:37:23 +03:00
Pierre Neidhardt 49b28a740b
gnu: Add compsize. 
* gnu/packages/linux.scm (compsize): New variable.
 2019-08-18 15:48:50 +02:00
Brian Leung 0fc235a023
gnu: Add emacs-phi-search-mc. 
* gnu/packages/emacs-xyz.scm (emacs-phi-search-mc): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 15:56:31 +03:00
Brian Leung e076ca86db
gnu: Add emacs-phi-search. 
* gnu/packages/emacs-xyz.scm (emacs-phi-search): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 15:56:30 +03:00
Oleg Pykhalov 44e8358298
gnu: emacs-sesman: Fix source. 
This commit follows 196472e7f3.

* gnu/packages/emacs-xyz.scm (emacs-sesman)[source](origin): Append "v" to a
version.
 2019-08-18 15:56:30 +03:00
Brian Leung 196472e7f3
gnu: emacs-sesman: Update to 0.3.4. 
* gnu/packages/emacs-xyz.scm (emacs-sesman): Update to 0.3.4.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 15:24:44 +03:00
Brian Leung de7f3dc7ee
gnu: emacs-helm-org-rifle: Update to 1.7.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm-org-rifle): Update to 1.7.0.
[inputs]: Add emacs-org.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 15:24:43 +03:00
Brian Leung a212a54c02
gnu: emacs-racket-mode: Update to 0.0.2-2.5300aa0. 
* gnu/packages/emacs-xyz.scm (emacs-racket-mode): Update to 0.0.2-2.5300aa0.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 15:24:43 +03:00
Brian Leung 36d4926949
gnu: emacs-magit-todos: Update to 1.4. 
* gnu/packages/emacs-xyz.scm (emacs-magit-todos): Update to 1.4.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-08-18 15:24:30 +03:00
Nicolas Goaziou 37d40fa509
Revert "gnu: ed: Update to 1.15." 
This reverts commit 3ff75b6403.

Too many dependents packages for master.
 2019-08-18 12:20:53 +02:00
Nicolas Goaziou 3ff75b6403
gnu: ed: Update to 1.15. 
* gnu/packages/ed.scm (ed): Update to 1.15.
 2019-08-18 12:19:45 +02:00
Tobias Geerinckx-Rice e764ba5225
gnu: git: Update to 2.23.0. 
* gnu/packages/version-control.scm (git): Update to 2.23.0.
 2019-08-17 23:30:11 +02:00
Ludovic Courtès 1b1c162124
gnu: xrandr: Update to 1.5.1. 
* gnu/packages/xorg.scm (xrandr): Update to 1.5.1.  Change archive type
to ".tar.xz".
 2019-08-17 23:18:11 +02:00
Ludovic Courtès beeeb261f2
gnu: setxkbmap: Update to 1.3.2. 
* gnu/packages/xorg.scm (setxkbmap): Update to 1.3.2.
 2019-08-17 23:18:11 +02:00
Arun Isaac d88b811adf
gnu: guile-email: Fix source hash. 
* gnu/packages/guile-xyz.scm (guile-email)[source]: Fix hash.
 2019-08-17 23:04:14 +05:30
Ludovic Courtès 2eb0628a42
gnu: guix, cuirass: Update to c902458 and 858b6b8 with Guile-JSON 3.x. 
* gnu/packages/package-management.scm (guix): Update to c902458.
[inputs]: Switch to GUILE-JSON-3.
(guix-daemon)[inputs]: Switch to GUILE-JSON-3.
* gnu/packages/ci.scm (cuirass): Update to 858b6b8.
[inputs]: Switch to GUILE-JSON-3.
 2019-08-17 19:25:48 +02:00
Robert Vollmert c902458863
gnu: Add elm-compiler 0.19.0 
This adds the elm compiler, version 0.19.0. This provides the
`elm` command, with the exception of the `elm reactor` subcommand.

Named `elm-compiler`, to leave space for `elm` as the full elm
including reactor.

* gnu/packages/elm.scm: New module.
(elm-compiler): New package.
* gnu/packages/patches/elm-disable-reactor.patch: New patch.
* gnu/packages/patches/elm-fix-map-key.patch: New patch.
* gnu/packages/patches/elm-relax-glsl-bound.patch: New patch.
* gnu/local.mk: Add new files.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-17 16:23:06 +02:00
Ludovic Courtès 198f560fcd
gnu: geeqie: Build sequentially. 
* gnu/packages/image-viewers.scm (geeqie)[arguments]: Add #:parallel-build?.
 2019-08-17 16:23:05 +02:00
Rutger Helling 2a63974df9
gnu: wine-staging: Update to 4.14. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.14.
* gnu/packages/wine.scm (wine-staging): Update to 4.14.
* gnu/packages/wine.scm (wine64-staging): Remove obsolete comment.
 2019-08-17 10:03:11 +02:00
Giacomo Leidi a830d14d4b
gnu: Add libgit2-glib. 
* gnu/packages/gnome.scm (libgit2-glib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-16 23:00:27 +02:00
Guillaume Le Vaillant 7d30b58808
gnu: gramps: Update to 5.0.2. 
* gnu/packages/genealogy.scm (gramps): Update to 5.0.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-16 23:00:27 +02:00
Guillaume Le Vaillant 66d146639d
gnu: txr: Update to 223. 
* gnu/packages/lisp.scm (txr): Update to 223.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-16 23:00:27 +02:00
Timotej Lazar 3b165f2a40
gnu: wpa-supplicant: install documentation. 
* gnu/packages/admin.scm (wpa-supplicant)[arguments]: Rename
'install-man-pages' phase to 'install-documentation'; install READMEs
and the example config file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-16 23:00:27 +02:00
Ricardo Wurmus b65bd33c36
gnu: r-edger: Update to 3.26.7. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.7.
 2019-08-16 22:41:27 +02:00
Alva 93b3ef1966
gnu: font-ibm-plex: Update to 2.0.0. 
* gnu/packages/fonts.scm (font-ibm-plex): Update to 2.0.0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-08-16 21:40:00 +02:00
Tobias Geerinckx-Rice f781251bf2
gnu: wcslib: Update to 6.4. 
* gnu/packages/astronomy.scm (wcslib): Update to 6.4.
 2019-08-16 21:14:44 +02:00
Mark H Weaver ccff55a25e
gnu: linux-libre: Update to 5.2.9. 
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.9.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
 2019-08-16 05:33:54 -04:00
Mark H Weaver 97f40332d4
gnu: linux-libre@4.19: Update to 4.19.67. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.67.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
 2019-08-16 05:33:09 -04:00
Mark H Weaver f1d2e4bac0
gnu: linux-libre@4.14: Update to 4.14.139. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.139.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
 2019-08-16 05:32:01 -04:00
Jelle Licht 44881cad93
gnu: Add swagger-diff. 
* gnu/packages/ruby.scm (swagger-diff): New variable.
 2019-08-15 22:00:02 +02:00
Mark H Weaver 9e6256ba0f
bootstrap: guile-static: Disable parallel build. 
* gnu/packages/make-bootstrap.scm (%guile-static)[arguments]:
Override #:parallel-build? to be #f.
 2019-08-15 14:46:23 -04:00
Mark H Weaver fe507d7a3d
bootstrap: Build bootstrap bash deterministically. 
* gnu/packages/patches/bash-4.4-linux-pgrp-pipe.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/make-bootstrap.scm (static-bash-for-bootstrap): New variable.
(%static-inputs): Use 'static-bash-for-bootstrap' instead of 'static-bash'.
 2019-08-15 14:46:20 -04:00
Mark H Weaver 6744cef5b0
bootstrap: Build the new reduced binary seed bootstrap on x86. 
* gnu/packages/make-bootstrap.scm (%bootstrap-tarballs)[inputs]: On i686-linux
and x86_64-linux, substitute linux-libre-headers, Mes, and MesCC, in place of
GCC, binutils, and glibc.
 2019-08-15 14:46:18 -04:00
Jan Nieuwenhuizen ed050b1cf5
bootstrap: Add mes-minimal-stripped-tarball. 
* gnu/packages/make-bootstrap.scm (%mes-minimal, %mes-minimal-stripped,
%mes-bootstrap-tarball): New variable.

Modified-By: Mark H Weaver <mhw@netris.org>
 2019-08-15 14:46:16 -04:00
Jan Nieuwenhuizen fb925c7257
bootstrap: Add mescc-tools-static-stripped-tarball. 
* gnu/packages/make-bootstrap.scm (%mescc-tools-static,
%mescc-tools-static-stripped, %mescc-tools-bootstrap-tarball): New variable.

Modified-By: Mark H Weaver <mhw@netris.org>
 2019-08-15 14:46:13 -04:00
Jan Nieuwenhuizen 5b8c6abcfc
gnu: Add linux-libre-headers-bootstrap-tarball. 
* gnu/packages/make-bootstrap.scm (%linux-libre-headers-stripped): New variable.
(%linux-libre-headers-bootstrap-tarball): New variable.
 2019-08-15 14:46:10 -04:00
Jelle Licht 369faa5995
gnu: Add ruby-json-schema. 
* gnu/packages/ruby.scm (ruby-json-schema): New variable.
 2019-08-15 20:42:10 +02:00
Efraim Flashner d4cf5b018a
gnu: einstein: Use mirror for source download. 
* gnu/packages/games.scm (einstein)[source]: Use 'mirror' syntax.
 2019-08-15 21:03:19 +03:00
Marius Bakke e3a39ade71
gnu: Remove python2-internetarchive. 
This trivial package fails to build and has no reverse dependencies.

* gnu/packages/web.scm (python2-internetarchive): Remove variable.
(python-internetarchive)[properties]: Remove.
 2019-08-15 19:40:28 +02:00
Marius Bakke ef8c83bdb9
gnu: python-responses: Update to 0.10.6. 
* gnu/packages/python-web.scm (python-responses): Update to 0.10.6.
 2019-08-15 19:18:11 +02:00
Ricardo Wurmus a9815a6cf2
gnu: Add r-cistopic. 
* gnu/packages/bioconductor.scm (r-cistopic): New variable.
 2019-08-15 17:44:25 +02:00
Ricardo Wurmus bb88417fb7
gnu: Add r-rcistarget. 
* gnu/packages/bioconductor.scm (r-rcistarget): New variable.
 2019-08-15 17:44:25 +02:00
Ricardo Wurmus 19f1aac0e7
gnu: Add r-lda. 
* gnu/packages/cran.scm (r-lda): New variable.
 2019-08-15 17:44:25 +02:00
Ricardo Wurmus 86d3822862
gnu: Add r-liger. 
* gnu/packages/cran.scm (r-liger): New variable.
 2019-08-15 17:03:23 +02:00
Ricardo Wurmus 9c3bfea673
gnu: Add r-patchwork. 
* gnu/packages/cran.scm (r-patchwork): New variable.
 2019-08-15 17:03:23 +02:00
Ricardo Wurmus 6e7553ffe0
gnu: Add r-rann-l1. 
* gnu/packages/cran.scm (r-rann-l1): New variable.
 2019-08-15 17:03:23 +02:00
Rutger Helling 2cbe7044ea
Revert "gnu: libinput: Update to 1.14.0." 
This reverts commit dfdd7380a1.
libinput-minimal causes too many rebuilds.
 2019-08-15 16:28:21 +02:00
Rutger Helling dfdd7380a1
gnu: libinput: Update to 1.14.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.14.0.
 2019-08-15 16:21:53 +02:00
Ricardo Wurmus 1c4e6aa938
gnu: Add itk-snap. 
* gnu/packages/image-processing.scm (itk-snap): New variable.
 2019-08-15 14:09:14 +02:00
Ricardo Wurmus 07f36b0c53
gnu: Add insight-toolkit-4.12. 
* gnu/packages/image-processing.scm (insight-toolkit-4.12): New variable.
 2019-08-15 14:09:14 +02:00
Ricardo Wurmus 8f4d457d93
gnu: Add insight-toolkit-4. 
* gnu/packages/image-processing.scm (insight-toolkit-4): New variable.
 2019-08-15 14:09:13 +02:00
Ricardo Wurmus d7701e1b94
gnu: Add insight-toolkit. 
* gnu/packages/image-processing.scm (insight-toolkit): New variable.
 2019-08-15 14:09:13 +02:00
Ricardo Wurmus 4243af4e57
gnu: Add vxl-1. 
* gnu/packages/image-processing.scm (vxl-1): New variable.
 2019-08-15 14:09:13 +02:00
Ricardo Wurmus 02e1acfb2a
gnu: Add vxl. 
* gnu/packages/image-processing.scm (vxl): New variable.
 2019-08-15 14:09:13 +02:00
Ricardo Wurmus 18696f7acf
gnu: Add vtk-6. 
* gnu/packages/image-processing.scm (vtk-6): New variable.
 2019-08-15 14:08:59 +02:00
Carl Dong 67dac6b892
gnu: mingw: Add x86_64 support. 
This patch parameterizes previously hard-coded instances of
i686-w64-mingw32, adding support for x86_64-w64-mingw32.

* gnu/packages/mingw.scm (make-mingw-w64): New procedure.
(mingw-w64-i686, mingw-w64-x86_64): New variables.
(%mingw-triplet): Remove.
(mingw-w64): Update to point to 'mingw-w64-i686'.
* gnu/packages/cross-base.scm (cross-gcc): Use 'libc' keyword argument
if specified, instead of treating it as a boolean.
(native-libc): Return the correct mingw-w64 depending on machine
specified in target.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "x86_64-mingw".
* gnu/build/cross-toolchain.scm (set-cross-path/mingw): Replace
hardcoded 'i686-w64-mingw32' instances with 'target' keyword argument.
(cross-gcc-build-phases): Update accordingly; use 'target-mingw?'
implementation of target checking and add commentary.
* gnu/ci.scm (%cross-targets): Add "x86_64-w64-mingw32".
 2019-08-14 21:29:53 +02:00
Eric Bavier 4afdb79249
gnu: onionshare: Upgrade to 2.1. 
* gnu/packages/tor.scm (onionshare): Upgrade to 2.1.
[arguments]: Rename "tests" phase to "check".  Set home directory for tests.
Remove reference to closed upstream bug.
[inputs]: Add python-pycrypto and python-pysocks.
[license]: Remove bsd-3 license; relevant file no longer present.
 2019-08-13 22:34:57 -05:00
Carlo Zancanaro 588a0a335d
gnu: Blender: Use opensubdiv. 
Fixes <https://bugs.gnu.org/36977>.

* gnu/packages/graphics.scm (blender)[inputs]: Add opensubdiv.
[arguments]: Add "-DWITH_OPENSUBDIV=ON" to #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-08-13 14:43:42 -04:00
Carlo Zancanaro 13f30b546d
gnu: Add opensubdiv. 
* gnu/packages/graphics.scm (opensubdiv): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-08-13 14:43:39 -04:00
Marius Bakke 1b1b006afd
Merge branch 'staging' 2019-08-13 18:51:12 +02:00
Marius Bakke fc34abf8c1
gnu: xapian: Update to 1.4.12. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.12.
 2019-08-13 18:40:55 +02:00
Marius Bakke da926c2503
gnu: ccid: Update to 1.4.31. 
* gnu/packages/security-token.scm (ccid): Update to 1.4.31.
 2019-08-13 18:40:55 +02:00
Marius Bakke ecfdc95a72
gnu: zathura-pdf-mupdf: Update to 0.3.5. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.5.
 2019-08-13 18:40:54 +02:00
Marius Bakke d08dc99fad
gnu: mupdf: Update to 1.16.1. 
* gnu/packages/pdf.scm (mupdf): Update to 1.16.1.
 2019-08-13 18:40:54 +02:00
Tobias Geerinckx-Rice ecab5e3529
gnu: git: Update to 2.22.1. 
* gnu/packages/version-control.scm (git): Update to 2.22.1.
 2019-08-13 17:09:10 +02:00
Leo Famulari 55fe9abdcc
gnu: tremc: Update to 0.9.1-0.4d50dab. 
* gnu/packages/bittorrent.scm (tremc): Update to 0.9.1-0.4d50dab.
 2019-08-13 11:03:27 -04:00
Nicolas Goaziou 1ae2d3a11b
gnu: emacs-relint: Update to 1.10. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.10.
 2019-08-13 12:52:47 +02:00
Nicolas Goaziou 77bdfe2f13
gnu: scribus: Update to 1.5.5. 
* gnu/packages/scribus.scm (scribus): Update to 1.5.5.
[source]: Remove unnecessary patches and snippet.
[description]: Change freetype to FreeType.
* gnu/packages/patches/scribus-poppler.patch: Remove file.
* gnu/local.mk: Apply removal.
 2019-08-13 12:44:06 +02:00
Amin Bandali f9ccde2460
gnu: Add emacs-ebdb. 
* gnu/packages/emacs-xyz.scm (emacs-ebdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-13 12:18:52 +02:00
Brian Leung 39a6852acb
gnu: emacs-inf-ruby: Update to 2.5.2. 
* gnu/packages/emacs-xyz.scm (emacs-inf-ruby): Update to 2.5.2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-13 12:13:20 +02:00
Leo Famulari a797e55ca0
gnu: Syncthing: Update to 1.2.1. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.2.1.
 2019-08-12 16:23:12 -04:00
Leo Famulari e9a0e4756f
gnu: go-github-com-syncthing-notify: Update to 0.0.0-5.69c7a95. 
* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to
0.0.0-5.69c7a95.
 2019-08-12 16:23:12 -04:00
Leo Famulari 158e82933c
gnu: go-github-com-lib-pq: Update to 1.2.0. 
* gnu/packages/syncthing.scm (go-github-com-lib-pq): Update to 1.2.0.
 2019-08-12 16:23:12 -04:00
Leo Famulari e7189e0bff
gnu: go-github-com-maruel-panicparse: Update to 1.3.0. 
* gnu/packages/golang.scm (go-github-com-maruel-panicparse): Update to 1.3.0.
 2019-08-12 16:23:11 -04:00
Leo Famulari 8a5073461f
gnu: go-golang-org-x-sys-unix: Update to 0.0.0-4.04f50cd. 
* gnu/packages/golang.scm (go-golang-org-x-sys-unix): Update to 0.0.0-4.04f50cd.
 2019-08-12 16:23:11 -04:00
Leo Famulari 6df4e6899d
gnu: MPD: Update to 0.21.13. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.13.
 2019-08-12 16:21:52 -04:00
Leo Famulari 89ccc9ce91
gnu: dav1d: Update to 0.4.0. 
* gnu/packages/video.scm (dav1d): Update to 0.4.0.
 2019-08-12 16:21:49 -04:00
Nicolas Goaziou 57939283c0
gnu: mame: Fix build. 
* gnu/packages/emulators.scm (mame): Apply upstream patch.
* gnu/packages/patches/mame-rapidjson-fix.patch: New file.
* gnu/local.mk: Register file.
 2019-08-12 15:39:59 +02:00
Efraim Flashner c9093d2794
gnu: Add rust-winapi. 
* gnu/packages/crates-io.scm (rust-winapi): New variable.
 2019-08-12 11:57:33 +03:00
Efraim Flashner 07631e31b1
gnu: Add rust-winapi-x86-64-pc-windows-gnu. 
* gnu/packages/crates-io.scm (rust-winapi-x86-64-pc-windows-gnu): New
variable.
 2019-08-12 11:57:33 +03:00
Efraim Flashner 58fdf6e1f2
gnu: Add rust-winapi-i686-pc-windows-gnu. 
* gnu/packages/crates-io.scm (rust-winapi-i686-pc-windows-gnu): New
variable.
 2019-08-12 11:57:33 +03:00
Efraim Flashner 2a13c9fa5c
gnu: Add rust-wasm-bindgen-shared. 
* gnu/packages/crates-io.scm (rust-wasm-bindgen-shared): New variable.
 2019-08-12 11:57:33 +03:00
Efraim Flashner ede033176a
gnu: Add rust-unindent. 
* gnu/packages/crates-io.scm (rust-unindent): New variable.
 2019-08-12 11:57:32 +03:00
Efraim Flashner 96bb8fd065
gnu: Add rust-unicode-width. 
* gnu/packages/crates-io.scm (rust-unicode-width): New variable.
 2019-08-12 11:57:32 +03:00
Efraim Flashner f706f5dcf0
gnu: Add rust-ucd-util. 
* gnu/packages/crates-io.scm (rust-ucd-util): New variable.
 2019-08-12 11:57:32 +03:00
Efraim Flashner 92a292f14f
gnu: Add rust-typenum. 
* gnu/packages/crates-io.scm (rust-typenum): New variable.
 2019-08-12 11:57:31 +03:00
Efraim Flashner eca548232c
gnu: Add rust-synstructure-test-traits. 
* gnu/packages/crates-io.scm (rust-synstructure-test-traits): New
variable.
 2019-08-12 11:57:31 +03:00
Efraim Flashner 3ded5e3f70
gnu: Add rust-strsim. 
* gnu/packages/crates-io.scm (rust-strsim): New variable.
 2019-08-12 11:57:31 +03:00
Efraim Flashner 0d601e3860
gnu: Add rust-stdweb-internal-runtime. 
* gnu/packages/crates-io.scm (rust-stdweb-internal-runtime): New
variable.
 2019-08-12 11:57:31 +03:00
Efraim Flashner a60f26b24d
gnu: Add rust-spin. 
* gnu/packages/crates-io.scm (rust-spin): New variable.
 2019-08-12 11:57:30 +03:00
Efraim Flashner b158738a04
gnu: Add rust-slab. 
* gnu/packages/crates-io.scm (rust-slab): New variable.
 2019-08-12 11:57:30 +03:00
Efraim Flashner 9cbb0c97ce
gnu: Add rust-shlex. 
* gnu/packages/crates-io.scm (rust-shlex): New variable.
 2019-08-12 11:57:30 +03:00
Efraim Flashner b7ca017ad3
gnu: Add rust-semver-parser. 
* gnu/packages/crates-io.scm (rust-semver-parser): New variable.
 2019-08-12 11:57:29 +03:00
Efraim Flashner ac3e813b84
gnu: Add rust-scopeguard. 
* gnu/packages/crates-io.scm (rust-scopeguard): New variable.
 2019-08-12 11:57:29 +03:00
Efraim Flashner cbfef1f903
gnu: Add rust-scoped-tls. 
* gnu/packages/crates-io.scm (rust-scoped-tls): New variable.
 2019-08-12 11:57:29 +03:00
Efraim Flashner f6a1efbca4
gnu: Add rust-rustc-std-workspace-core. 
* gnu/packages/crates-io.scm (rust-rustc-std-workspace-core): New
variable.
 2019-08-12 11:57:29 +03:00
Efraim Flashner dea7871742
gnu: Add rust-quick-error. 
* gnu/packages/crates-io.scm (rust-quick-error): New variable.
 2019-08-12 11:57:28 +03:00
Efraim Flashner 3bb3a9a021
gnu: Add rust-ppv-lite86. 
* gnu/packages/crates-io.scm (rust-ppv-lite86): New variable.
 2019-08-12 11:57:28 +03:00
Efraim Flashner b7d218d8cb
gnu: Add rust-pocket-resources. 
* gnu/packages/crates-io.scm (rust-pocket-resources): New variable.
 2019-08-12 11:57:28 +03:00
Efraim Flashner b1c3b9e73b
gnu: Add rust-plain. 
* gnu/packages/crates-io.scm (rust-plain): New variable.
 2019-08-12 11:57:27 +03:00
Efraim Flashner b275df9cd3
gnu: Add rust-pin-utils. 
* gnu/packages/creates-io.scm (rust-pin-utils): New variable.
 2019-08-12 11:57:27 +03:00
Efraim Flashner e11365fdad
gnu: Add rust-percent-encoding. 
* gnu/packages/creates-io.scm (rust-percent-encoding): New variable.
 2019-08-12 11:57:27 +03:00
Efraim Flashner f22f05d901
gnu: Add rust-peeking-take-while. 
* gnu/packages/crates-io.scm (rust-peeking-take-while): New variable.
 2019-08-12 11:57:27 +03:00
Efraim Flashner 0c6759d87e
gnu: Add rust-md5. 
* gnu/packages/creates-io.scm (rust-md5): New variable.
 2019-08-12 11:57:26 +03:00
Efraim Flashner e7ffbe2fda
gnu: Add rust-matches. 
* gnu/packages/crates-io.scm (rust-matches): New variable.
 2019-08-12 11:57:26 +03:00
Efraim Flashner 9c6301319e
gnu: Add rust-maplit. 
* gnu/packages/creates-io.scm (rust-maplit): New variable.
 2019-08-12 11:57:26 +03:00
Efraim Flashner bfe256ba2c
gnu: Add rust-json. 
* gnu/packages/creates-io.scm (rust-json): New variable.
 2019-08-12 11:57:25 +03:00
Efraim Flashner 81749732dd
gnu: Add rust-itoa. 
* gnu/packages/creates-io.scm (rust-itoa): New variable.
 2019-08-12 11:57:25 +03:00
Efraim Flashner 1d5c422c4a
gnu: Add rust-hex. 
* gnu/packages/crates-io.scm (rust-hex): New variable.
 2019-08-12 11:57:25 +03:00
Efraim Flashner 1956ba239c
gnu: Add rust-futures. 
* gnu/packages/crates-io.scm (rust-futures): New variable.
 2019-08-12 11:57:25 +03:00
Efraim Flashner 6b69f9f4e3
gnu: Add rust-fs-extra. 
* gnu/packages/creates-io.scm (rust-fs-extra): New variable.
 2019-08-12 11:57:24 +03:00
Efraim Flashner 1816930430
gnu: Add rust-fnv. 
* gnu/packages/crates-io.scm (rust-fnv): New variable.
 2019-08-12 11:57:24 +03:00
Efraim Flashner 7469d541df
gnu: Add rust-fallible-iterator. 
* gnu/packages/crates-io.scm (rust-fallible-iterator): New variable.
 2019-08-12 11:57:24 +03:00
Efraim Flashner f3739ec0c1
gnu: Add rust-dtoa. 
* gnu/packages/crates-io.scm (rust-dtoa): New variable.
 2019-08-12 11:57:23 +03:00
Efraim Flashner f0b9ffcdee
gnu: Add rust-doc-comment. 
* gnu/packages/crates-io.scm (rust-doc-comment): New variable.
 2019-08-12 11:57:23 +03:00
Efraim Flashner b977128212
gnu: Add rust-discard. 
* gnu/packages/crates-io.scm (rust-discard): New variable.
 2019-08-12 11:57:23 +03:00
Efraim Flashner f69bf22334
gnu: Add rust-cfg-if. 
* gnu/packages/crates-io.scm (rust-cfg-if): New variable.
 2019-08-12 11:57:22 +03:00
Efraim Flashner dcc0069932
gnu: Add rust-bitflags. 
* gnu/packages/crates-io.scm (rust-bitflags): New variable.
 2019-08-12 11:57:22 +03:00
Efraim Flashner 242668bdbd
gnu: Add rust-bencher. 
* gnu/packages/crates-io.scm (rust-bencher): New variable.
 2019-08-12 11:57:22 +03:00
Efraim Flashner 060958949a
gnu: Add rust-autocfg. 
* gnu/packages/crates-io.scm (rust-autocfg): New variable.
 2019-08-12 11:57:22 +03:00
Efraim Flashner 96c71bffaa
gnu: crates-io.scm: Sort packages alphabetically. 
* gnu/packages/crates-io.scm: Sort packages alphabetically.
 2019-08-12 11:57:21 +03:00
Efraim Flashner 513a66c932
gnu: vifm: Re-indent package. 
* gnu/packages/vim.scm (vifm)[arguments]: Re-indent section.
 2019-08-12 11:56:55 +03:00
Efraim Flashner b4bd0d86a8
gnu: vifm: Update to 0.10.1. 
* gnu/packages/vim.scm (vifm): Update to 0.10.1.
 2019-08-12 11:56:55 +03:00
Ricardo Wurmus fdc22edb6c
gnu: r-ggplot2: Update to 3.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.1.
 2019-08-12 10:25:29 +02:00
Ricardo Wurmus 813b7210aa
gnu: r-with-tests: Update to 3.6.1. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.6.1.
 2019-08-12 10:25:29 +02:00
Efraim Flashner e203e57b8a
gnu: font-gnu-unifont: Update to 12.1.03. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.1.03.
 2019-08-12 11:22:40 +03:00
Marius Bakke da7e59ac41
gnu: ungoogled-chromium: Update to 76.0.3809.100-0.8eba5c0 [security fixes]. 
This release fixes CVE-2019-5867 and CVE-2019-5868.

* gnu/packages/chromium.scm (%chromium-version): Set to 76.0.3809.100.
(%ungoogled-revision): Set to 8eba5c0.
(%chromium-origin, %ungoogled-origin): Update hashes.
 2019-08-12 01:50:43 +02:00
Nicolas Goaziou 049915a961
gnu: mame: Update to 0.212. 
* gnu/packages/emulators.scm (mame): Update to 0.212.
 2019-08-11 23:07:20 +02:00
Tobias Geerinckx-Rice c383c36ede
gnu: openconnect: Update to 8.04. 
* gnu/packages/vpn.scm (openconnect): Update to 8.04.
 2019-08-11 19:43:02 +02:00
Mark H Weaver ffb7e5a8e4
gnu: linux-libre@4.9: Update to 4.9.189. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.189.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
 2019-08-11 13:14:59 -04:00
Mark H Weaver 5e1ab622d9
gnu: linux-libre@4.4: Update to 4.4.189. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.189.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
 2019-08-11 13:14:05 -04:00
Vagrant Cascadian fae0a777dc
gnu: Update electrum to 3.3.8. 
* gnu/packages/finance (electrum): Update to 3.3.8.
 2019-08-11 08:42:10 -07:00
Vagrant Cascadian c91364d36c
gnu: diffoscope: Update to 120. 
* gnu/packages/package-management (diffoscope): Update to 120.
 2019-08-11 07:45:25 -07:00
Marius Bakke 5e5cdac0ae
Revert "gnu: python-packaging: Update to 19.1." 
The new version fails tests on architectures other than x86_64.

This reverts commit cb16a9fba9.
 2019-08-11 14:58:14 +02:00
Mark H Weaver dbc3f1f8b2
gnu: linux-libre: Update to 5.2.8. 
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.8.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
 2019-08-09 14:22:06 -04:00
Mark H Weaver f16109ccef
gnu: linux-libre@4.19: Update to 4.19.66. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.66.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
 2019-08-09 14:21:21 -04:00
Mark H Weaver 55ebb3ebf6
gnu: linux-libre@4.14: Update to 4.14.138. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.138.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
 2019-08-09 14:20:12 -04:00
Brian Leung d51f20f9b8
gnu: emacs-deadgrep: Update to 0.8-1.329119c. 
* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-1.329119c.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-09 16:32:59 +02:00
Nicolas Goaziou b22e47a1aa
gnu: emacs-xr: Update to 1.13. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.13.
 2019-08-09 16:29:21 +02:00
Ricardo Wurmus e33e3a14c5
gnu: r-xml2: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.2.
 2019-08-09 16:03:50 +02:00
Ricardo Wurmus 3ea548290a
gnu: r-ggforce: Update to 0.3.0. 
* gnu/packages/cran.scm (r-ggforce): Update to 0.3.0.
[propagated-inputs]: Add r-tidyselect and r-withr.
 2019-08-09 16:03:34 +02:00
Ricardo Wurmus 179ab67ace
gnu: r-tidytree: Update to 0.2.6. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.6.
 2019-08-09 16:03:23 +02:00
Ricardo Wurmus c2847323d8
gnu: freebayes: Simplify and enable tests. 
* gnu/packages/bioinformatics.scm (freebayes)[arguments]: Enable tests; set
make flags; add phase "fix-tests"; fix both Makefiles in "fix-makefiles"
phase; move build of tabixpp and vcflib to separate phase
"build-tabixpp-and-vcflib"; simplify make invocations; remove custom "build"
phase.
 2019-08-09 12:15:26 +02:00
Ricardo Wurmus 7cd98e868e
gnu: freebayes: Move bamtools to inputs. 
* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Move bamtools
from here...
[inputs]: ...to here.
 2019-08-09 12:15:26 +02:00
Arun Isaac db18d87ac3
gnu: guile-email: Update to 0.2.0. 
* gnu/packages/guile-xyz.scm (guile-email): Update to 0.2.0.
[source]: Update URI.
[native-inputs]: Remove autoconf and automake. Add lzip.
[arguments]: Add GUILE_AUTO_COMPILE=0 to #:make-flags.
[home-page]: Update URI.
[description]: Update description.
 2019-08-09 14:45:33 +05:30
Efraim Flashner 32c517a327
gnu: 4store: Remove unneeded build phase. 
* gnu/packages/databases.scm (4store)[arguments]: Remove unneeded
'generate-configure phase.
 2019-08-09 12:13:18 +03:00
Efraim Flashner 50e20b8fee
gnu: 4store: Don't use unstable tarball. 
* gnu/packages/databases.scm (4store)[source]: Download using
'git-fetch'.
 2019-08-09 12:12:08 +03:00
Pierre Neidhardt 8803dbdad8
gnu: Add freebayes. 
* gnu/packages/bioinformatics.scm (freebayes): New variable.
 2019-08-09 10:47:25 +03:00
Pierre Neidhardt 95fb1a1851
gnu: Add vcflib. 
* gnu/packages/bioinformatics.scm (vcflib): New variable.
(tabixpp-freebayes): New private variable.
 2019-08-09 10:43:40 +03:00
Mark H Weaver f7780fdf61
gnu: isc-dhcp: Update bundled BIND to 9.11.9. 
* gnu/packages/patches/isc-dhcp-4.4.1-fixes-for-newer-bind.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (isc-dhcp): Update BIND version to 9.11.9.
[arguments]: In the 'replace-bundled-bind' phase, apply the patch.  In the
'post-configure' phase: Refine a substitute* regexp to avoid substituting an
instance of "./configure.log" in the BIND Makefile.  Substitute /usr/bin/file
in the BIND configure script.
[native-inputs]: Add 'file', 'patch', and the patch.
[inputs]: Update the hash of bind-source-tarball.
 2019-08-08 17:24:21 -04:00
Jovany Leandro G.C 5cded306f9
gnu: Add cutter. 
* gnu/packages/engineering.scm (cutter): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-08-08 20:14:14 +02:00
Dimakakos Dimos via Guix-patches ae54a4c0ef
gnu: Add emacs-ox-hugo. 
gnu/packages/emacs-xyz.scm (emacs-ox-hugo): New variable

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-08-08 20:14:14 +02:00
Kyle Meyer a4a41a7ba8
gnu: git-annex: Update to 7.20190708. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20190708.
[inputs]: Add new dependency, ghc-concurrent-output.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-08-08 20:14:14 +02:00
Kyle Meyer 3d45d8f14b
gnu: git-annex: Don't patch shebang used in hooks. 
git-annex relies on configuring Git's pre-commit and post-receive hooks.
Avoid patching the shebang that git-annex embeds when generating these hooks
so that the hooks don't fail if garbage collection claims the bash that was
current when the annex repository was initialized.

* gnu/packages/haskell-apps.scm (git-annex):[arguments]: Patch hook shebangs
only temporarily for tests.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-08-08 20:14:14 +02:00
Brian Leung deccffb264
gnu: emacs-helpful: Update to 0.17. 
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.17.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-08-08 20:14:14 +02:00
Marius Bakke 36f400f616
Merge branch 'master' into staging 2019-08-08 18:14:45 +02:00
Marius Bakke ffc4869e45
gnu: ruby-pg: Update to 1.1.4. 
* gnu/packages/ruby.scm (ruby-pg): Update to 1.1.4.
[inputs]: Change from POSTGRESQL-9.6 to POSTGRESQL.
 2019-08-08 17:48:46 +02:00
Marius Bakke c96ec77198
gnu: exempi: Update home page. 
* gnu/packages/freedesktop.scm (exempi)[home-page]: Update to current.
 2019-08-08 17:48:46 +02:00
Marius Bakke 14b80bf6ca
gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
 2019-08-08 17:48:46 +02:00
Marius Bakke cbfddc2f33
gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209]. 
* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
 2019-08-08 17:48:46 +02:00
Marius Bakke df3db97587
gnu: exempi: Update to 2.5.1. 
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.1.
 2019-08-08 17:48:45 +02:00
Marius Bakke bd12be346b
gnu: LibRaw: Update to 0.19.4. 
* gnu/packages/photo.scm (libraw): Update to 0.19.4.
 2019-08-08 17:48:45 +02:00
Marius Bakke c8f5827a56
gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql): Update to 10.10.
 2019-08-08 17:32:18 +02:00
Ricardo Wurmus 7ef25083f0
gnu: r-modelr: Update to 0.1.5. 
* gnu/packages/cran.scm (r-modelr): Update to 0.1.5.
[propagated-inputs]: Remove r-lazyeval; add r-rlang.
 2019-08-08 17:20:46 +02:00
Ricardo Wurmus eb8963d989
gnu: r-quantreg: Update to 5.51. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.51.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus eaca771e88
gnu: r-knitr: Update to 1.24. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.24.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus 9649072cbd
gnu: r-markdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.1.
[propagated-inputs]: Add r-xfun.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus d099499e0b
gnu: r-ggsignif: Update to 0.6.0. 
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.0.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus 90060e2071
gnu: r-hdf5array: Update to 1.12.2. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.2.
 2019-08-08 16:47:05 +02:00
Ricardo Wurmus a39f2e4cea
gnu: r-biocparallel: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.1.
 2019-08-08 16:47:02 +02:00
Marius Bakke ba73c434e0
gnu: ToME4: Disable parallel build. 
* gnu/packages/games.scm (tome4)[arguments]: Add <#:parallel-build?>.
 2019-08-08 16:45:14 +02:00
Efraim Flashner 1a069a170c
Revert "gnu: Add vcflib." 
This reverts commit 194e45f90a.

This commit does not have a good commit message, and it breaks master
 2019-08-08 15:34:05 +03:00
Efraim Flashner 6bc63fd8a7
Revert "gnu: Add freebayes." 
This reverts commit 173e046950.
 2019-08-08 15:32:51 +03:00
Pierre Neidhardt 173e046950
gnu: Add freebayes. 
* gnu/packages/bioinformatics.scm (freebayes): New variable.
 2019-08-08 15:18:34 +03:00
Pierre Neidhardt 194e45f90a
gnu: Add vcflib. 
* gnu/packages/bioinformatics.scm (vcflib): New variable.
 2019-08-08 15:18:33 +03:00
Pierre Neidhardt 7d71557d4d
gnu: Add fastahack. 
* gnu/packages/bioinformatics.scm (fastahack): New variable.
 2019-08-08 15:18:32 +03:00
Pierre Neidhardt 70782dddff
gnu: Add fsom. 
* gnu/packages/bioinformatics.scm (fsom): New variable.
 2019-08-08 15:18:31 +03:00
Pierre Neidhardt 8cd51276e5
gnu: Add multichoose. 
* gnu/packages/bioinformatics.scm (multichoose): New variable.
 2019-08-08 15:18:30 +03:00
Pierre Neidhardt 7faa70cf2b
gnu: Add smithwaterman. 
* gnu/packages/bioinformatics.scm (smithwaterman): New variable.
 2019-08-08 15:18:29 +03:00
Pierre Neidhardt 62a031afc4
gnu: Add tabixpp. 
* gnu/packages/bioinformatics.scm (tabixpp): New variable.
 2019-08-08 15:18:14 +03:00
Efraim Flashner 8378c87a59
gnu: Add network-manager-openconnect. 
* gnu/packages/gnome.scm (network-manager-openconnect): New variable.
 2019-08-08 10:08:00 +03:00
Robert Vollmert caa366ec23
gnu: ghc-trifecta: Disable tests. 
* gnu/packages/haskell.scm (ghc-trifecta)[arguments]: Disable tests.
 2019-08-07 22:05:34 -04:00
Robert Vollmert dbfaac113a
gnu: ghc-yaml: Disable tests. 
* gnu/packages/haskell.scm (ghc-yaml)[arguments]: Disable tests.
 2019-08-07 22:05:34 -04:00
Robert Vollmert 9ec2d6f84c
gnu: ghc-libmpd-haskell: Disable tests. 
* gnu/packages/haskell.scm (ghc-libmpd-haskell)[arguments]: Disable
tests.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 3755088b54
gnu: Remove ghc-packedstring. 
The package has no reverse dependencies and is deprecated upstream.

* gnu/packages/haskell.scm (ghc-packedstring): Remove variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 63edeca773
gnu: Remove ghc-haddock-test. 
The package doesn't build, has no reverse dependencies, and is
deprecated upstream.

* gnu/packages/haskell.scm (ghc-haddock-test): Remove variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 0d59302eba
gnu: Remove ghc-regex-tdfa-rc. 
The package doesn't build, has no reverse dependencies, and is deprecated
upstream.

* gnu/packages/haskell.scm (ghc-regex-tdfa-rc): Remove variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 8ede1021c8
gnu: Add ghc-snap-server. 
* gnu/packages/haskell-web.scm (ghc-snap-server): New variable.
 2019-08-07 22:05:33 -04:00
Robert Vollmert 4f1793a2be
gnu: Add ghc-snap-core. 
* gnu/packages/haskell-web.scm (ghc-snap-core): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 4ccd679f25
gnu: Add ghc-http-streams. 
* gnu/packages/haskell-web.scm (ghc-http-streams): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 0173cdd31d
gnu: Add ghc-http-common. 
* gnu/packages/haskell-web.scm (ghc-http-common): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 4ba66e6f16
gnu: Add ghc-openssl-streams. 
* gnu/packages/haskell-crypto.scm (ghc-openssl-streams): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 0925b80409
gnu: Add ghc-hsopenssl. 
* gnu/packages/haskell-crypto.scm (ghc-hsopenssl): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 7b01a977e4
gnu: Add ghc-io-streams-haproxy. 
* gnu/packages/haskell-xyz.scm (ghc-io-streams-haproxy): New variable.
 2019-08-07 22:05:32 -04:00
Robert Vollmert 658dbc7ff2
gnu: Add ghc-io-streams. 
* gnu/packages/haskell-xyz.scm (ghc-io-streams): New variable.
 2019-08-07 22:05:31 -04:00
Robert Vollmert 14e4199646
gnu: Add ghc-zlib-bindings. 
* gnu/packages/haskell-xyz.scm (ghc-zlib-bindings): New variable.
 2019-08-07 22:05:31 -04:00
Robert Vollmert bbf8bf31e4
gnu: Add ghc-threads. 
* gnu/packages/haskell-xyz.scm (ghc-threads): New variable.
 2019-08-07 22:05:31 -04:00
Robert Vollmert b57e99f574
gnu: Add ghc-readable. 
* gnu/packages/haskell-xyz.scm (ghc-readable): New variable.
 2019-08-07 22:05:31 -04:00
Robert Vollmert efb96749a2
gnu: Add ghc-concurrent-extra. 
* gnu/packages/haskell-xyz.scm (ghc-concurrent-extra): New variable.
 2019-08-07 22:05:31 -04:00
Robert Vollmert 79fcc5e59b
gnu: Add ghc-language-glsl. 
* gnu/packages/haskell-xyz.scm (ghc-language-glsl): New variable.
 2019-08-07 22:05:30 -04:00
Robert Vollmert 6b34d01cbf
gnu: Add ghc-prettyclass. 
* gnu/package/haskell-xyz.scm: New file.
* gnu/local.mk: Add it.
* gnu/packages/haskell-xyz.scm (ghc-prettyclass): New variable.
 2019-08-07 22:05:30 -04:00
Robert Vollmert 91732735f6
gnu: ghc-ansi-terminal: Downgrade to 0.8.0.4. 
This reverts commits

    cbff89d126,
    5a499d0f7d, and
    4e3ebbfb16.

* gnu/packages/haskell.scm (ghc-ansi-terminal): Downgrade to 0.8.0.4.
(ghc-ansi-terminal-0.8): Delete variable.
(ghc-ansi-wl-pprint, ghc-concurrent-output)[inputs]: Replace
'ghc-ansi-terminal-0.8' with 'ghc-ansi-terminal'.
* gnu/packages/haskell-check.scm (ghc-hedgehog)[inputs]: Likewise.
 2019-08-07 22:05:30 -04:00
Robert Vollmert e8aea9018b
gnu: ghc-validation: Downgrade to 1. 
This is the Stackage LTS version, which is compatible with
ansi-terminal 0.8.

* gnu/packages/haskell.scm (ghc-validation): Downgrade to 1.
 2019-08-07 22:05:30 -04:00
Robert Vollmert f74aa98ed7
gnu: ghc-concurrent-output: Downgrade to 1.10.9. 
This is the Stackage LTS version, which is compatible with
ansi-terminal 0.8.

* gnu/packages/haskell.scm (ghc-concurrent-output): Downgrade to 1.10.9
and use ghc-ansi-terminal-0.8.
 2019-08-07 22:05:30 -04:00
Robert Vollmert 1c54c30d9c
gnu: ghc-validation: Do not generate 'Setup.hs'. 
This is handled by the build system.

* gnu/packages/haskell.scm (ghc-validation): Remove 'arguments'.
 2019-08-07 22:05:30 -04:00
Robert Vollmert a1eb8be8ca
gnu: Remove ghc-parsec, ghc-stm, ghc-text, ghc-xhtml. 
These are ghc-8.4-bundled packages, removing to avoid build
conflicts.

* gnu/packages/haskell.scm (ghc-parsec, ghc-stm, ghc-text): Remove.
* gnu/packages/haskell-web.scm (ghc-xhtml): Remove.
* gnu/packages/agda.scm (agda)[inputs]: Remove ghc-stm and ghc-text.
* gnu/packages/bioinformatics.scm (ngless)[inputs]: Remove ghc-parsec and
ghc-text.
* gnu/packages/haskell-apps.scm (darcs)[inputs]: Remove ghc-parsec.
(git-annex)[inputs]: Remove ghc-stm and ghc-text.
(ghc-sdl2)[inputs]: Remove ghc-text.
(ghc-sdl2-image)[inputs]: Remove ghc-text.
* gnu/packages/haskell-check.scm (ghc-tasty-ant-xml)[inputs]: Remove ghc-stm.
(ghc-tasty)[inputs]: Remove ghc-stm.
(ghc-tasty-rerun)[inputs]: Same.
(ghc-quickcheck-instances)[inputs]: Remove ghc-text.
(ghc-hedgehog)[inputs]: Remove ghc-stm.
* gnu/packages/haskell-crypto.scm (ghc-asn1-encoding)[inputs]: Remove
ghc-text.
* gnu/packages/haskell-web.scm (ghc-tagsoup)[inputs]: Remove ghc-text.
(ghc-cookie)[inputs]: Same.
(ghc-http-types)[inputs]: Same.
(ghc-http)[inputs]: Remove ghc-parsec.
(ghc-http-client)[inputs]: Remove ghc-text.
(ghc-http2)[inputs]: Remove ghc-stm.
(ghc-http-conduit)[native-inputs]: Remove ghc-text.
(ghc-wai)[inputs]: Same.
(ghc-wai-extra)[inputs]: Same.
(ghc-warp)[inputs]: Remove ghc-stm and ghc-text.
(ghc-xss-sanitize)[native-inputs]: Remove ghc-text.
(ghc-css-text)[inputs]: Same.
(ghc-mime-types)[inputs]: Same.
(ghc-blaze-html)[inputs]: Same.
(ghc-aeson)[inputs]: Same.
(ghc-aeson-pretty)[inputs]: Same.
(ghc-aeson-qq)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-multipart)[inputs]: Remove ghc-parsec.
(ghc-uri-encode)[inputs]: Remove ghc-text.
(ghc-path-pieces)[inputs]: Same.
(ghc-yesod-core)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-yesod-persistent)[inputs]: Remove ghc-text.
(ghc-yesod-form)[inputs]: Same.
(ghc-yesod)[inputs]: Same.
(ghc-hxt-regex-xmlschema)[inputs]: Remove ghc-parsec and ghc-text.
(ghc-hxt)[inputs]: Remove ghc-parsec.
* gnu/packages/haskell.scm (ghc-convertible)[inputs]: Remove ghc-text.
(ghc-double-conversion)[inputs]: Same.
(ghc-tree-diff)[inputs]: Remove ghc-parsec and ghc-text.
[native-inputs]: Remove ghc-parsec.
(ghc-cgi)[inputs]: Remove ghc-parsec.
(hlint)[inputs]: Remove ghc-text.
(ghc-openglraw)[inputs]: Remove ghc-text.
(ghc-opengl)[inputs]: Same.
(ghc-streaming-commons)[inputs]: Remove ghc-stm and ghc-text.
(ghc-hackage-security)[inputs]: Remove ghc-parsec.
(cabal-install)[inputs]: Remove ghc-stm.
(ghc-parsec-numbers)[inputs]: Remove ghc-parsec.
(ghc-safesemaphore)[inputs]: Remove ghc-stm.
(ghc-text-binary)[inputs]: Remove ghc-text.
(ghc-hashable)[inputs]: Remove ghc-text.
(ghc-transformers-base)[inputs]: Remove ghc-stm.
(ghc-indents)[inputs]: Remove ghc-parsec.
(ghc-regex-tdfa-rc)[inputs]: Same.
(ghc-regex-tdfa-text)[inputs]: Same.
(ghc-regex)[inputs]: Remove ghc-text.
(ghc-parsers)[inputs]: Remove ghc-parsec and ghc-text.
(ghc-attoparsec)[inputs]: Remove ghc-text.
(ghc-attoparsec-bootstrap)[inputs]: Same.
(ghc-zip-archive)[inputs]: Same.
(ghc-polyparse)[inputs]: Same.
(ghc-reducers)[inputs]: Same.
(ghc-xml)[inputs]: Same.
(ghc-feed)[inputs]: Same.
(ghc-exceptions)[inputs]: Remove ghc-stm.
(ghc-case-insensitive)[inputs]: Remove ghc-text.
(ghc-megaparsec)[inputs]: Same.
(ghc-network-uri)[inputs]: Remove ghc-parsec.
(ghc-monad-control)[inputs]: Remove ghc-stm.
(ghc-blaze-builder)[inputs]: Remove ghc-text.
(ghc-blaze-markup)[inputs]: Same.
(ghc-async)[inputs]: Remove ghc-stm.
(ghc-invariant)[inputs]: Same.
(ghc-statevar)[inputs]: Same.
(ghc-lens)[inputs]: Remove ghc-text.
(ghc-cheapskate)[inputs]: Same.
(ghc-semigroups)[inputs]: Same.
(ghc-semigroups-bootstrap)[inputs]: Same.
(ghc-fast-logger)[inputs]: Same.
(ghc-scientific)[inputs]: Same.
(ghc-scientific-bootstrap)[inputs]: Same.
(ghc-texmath)[inputs]: Remove ghc-parsec.
(ghc-highlighting-kate)[inputs]: Same.
(ghc-cmark)[inputs]: Remove ghc-text.
(ghc-cmark-gfm)[inputs]: Same.
(ghc-th-lift-instances)[inputs]: Same.
(ghc-yaml)[inputs]: Same.
(ghc-hslua)[inputs]: Same.
(ghc-hslua-module-text)[inputs]: Same.
(ghc-skylighting-core)[inputs]: Same.
(ghc-doctemplates)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-pandoc)[inputs]: Same.
(ghc-typed-process)[inputs]: Remove ghc-stm.
(ghc-conduit-extra)[inputs]: Remove ghc-stm and ghc-text.
(ghc-xml-types)[inputs]: Remove ghc-text.
(ghc-xml-conduit)[inputs]: Same.
(ghc-pandoc-citeproc)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-regex-tdfa)[inputs]: Remove ghc-parsec.
(ghc-wl-pprint-text)[inputs]: Remove ghc-text.
(ghc-graphviz)[inputs]: Same.
(ghc-system-filepath-bootstrap)[inputs]: Same.
(ghc-system-fileio-bootstrap)[inputs]: Same.
(ghc-shelly)[inputs]: Same.
(ghc-chell)[inputs]: Same.
(ghc-system-filepath)[inputs]: Same.
(ghc-system-fileio)[inputs]: Same.
(ghc-fsnotify)[inputs]: Same.
(ghc-json)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-esqueleto)[inputs]: Remove ghc-text.
(shellcheck)[inputs]: Remove ghc-parsec.
(ghc-errors)[inputs]: Remove ghc-text.
(ghc-chunked-data)[inputs]: Same.
(ghc-uuid-types)[inputs]: Same.
(ghc-uuid)[inputs]: Same.
(ghc-rebase)[inputs]: Remove ghc-stm and ghc-text.
(ghc-foldl)[inputs]: Remove ghc-text.
(ghc-mono-traversable)[inputs]: Same.
(ghc-conduit-combinators)[inputs]: Same.
(ghc-aws)[inputs]: Same.
(ghc-stm-chans)[inputs]: Remove ghc-stm.
(ghc-monad-logger)[inputs]: Remove ghc-text and ghc-stm.
(ghc-shakespeare)[inputs]: Remove ghc-parsec and ghc-text.
(ghc-resource-pool)[inputs]: Remove ghc-stm.
(ghc-attoparsec-iso8601)[inputs]: Remove ghc-text.
(ghc-http-api-data)[inputs]: Same.
(ghc-persistent)[inputs]: Same.
(ghc-aeson-compat)[inputs]: Same.
(ghc-persistent-template)[inputs]: Same.
(ghc-unliftio)[inputs]: Remove ghc-stm.
(ghc-persistent-sqlite)[native-inputs]: Remove ghc-text.
(ghc-bytes)[inputs]: Same.
(ghc-missingh)[inputs]: Remove ghc-parsec.
(ghc-rio)[inputs]: Remove ghc-text.
(ghc-cairo)[inputs]: Same.
(ghc-atomic-write)[inputs]: Remove ghc-text.
[native-inputs]: Same.
(ghc-stm-conduit)[inputs]: Remove ghc-stm.
(ghc-conduit-algorithms)[inputs]: Same.
(ghc-interpolate)[native-inputs]: Remove ghc-text.
(ghc-hpack)[inputs]: Same.
(ghc-inline-c)[inputs]: Remove ghc-parsec.
(ghc-configurator)[inputs]: Remove ghc-text.
(ghc-c2hs)[native-inputs]: Same.
(ghc-libmpd)[inputs]: Same.
(ghc-concurrent-output)[inputs]: Remove ghc-stm.
* gnu/packages/idris.scm (idris)[inputs]: Remove ghc-text.
* gnu/packages/wm.scm (xmobar)[inputs]: Remove ghc-parsec and ghc-stm.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-07 22:05:29 -04:00
Robert Vollmert cce84c34cd
gnu: Add ghc-8.6. 
* gnu/packages/haskell.scm (ghc-8.6): New variable.

Co-authored-by: Timothy Sample <samplet@ngyro.com>
 2019-08-07 22:05:29 -04:00
Robert Vollmert a62ddb748f
gnu: ghc-8: Rename to 'ghc-8.4'. 
* gnu/packages/haskell.scm (ghc-8): Rename to...
(ghc-8.4): ...this.
(ghc-8): New variable.
 2019-08-07 22:05:23 -04:00
Marius Bakke 8e7f97b9ff
Merge branch 'master' into staging 2019-08-08 00:35:37 +02:00
Marius Bakke ba7ff983d6
gnu: wpa-supplicant: Update to 2.9. 
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.9.
 2019-08-08 00:30:56 +02:00
Marius Bakke 277faff8ff
gnu: xf86-video-intel: Update to 2.99.917-14.6f4972d. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-14.6f4972d.
 2019-08-08 00:30:56 +02:00
Ricardo Wurmus 9bd1333e58
Merge remote-tracking branch 'origin/master' into wip-texlive 2019-08-07 22:26:55 +02:00
Marius Bakke fa228db78b
gnu: mesa: Update to 19.1.4. 
* gnu/packages/gl.scm (mesa): Update to 19.1.4.
 2019-08-07 22:07:41 +02:00
Efraim Flashner 355ba48c46
gnu: igt-gpu-tools: Rework custom phases. 
* gnu/packages/admin.scm (igt-gpu-tools)[arguments]: Use custom 'autogen
phase to replace 'bootstrap phase.
 2019-08-07 20:06:01 +03:00
Efraim Flashner 72bc58f850
gnu: dosbox: Remove extra build phase. 
* gnu/packages/emulators.scm (dosbox)[arguments]: Remove unneeded
'autogen phase.
 2019-08-07 20:06:00 +03:00
Efraim Flashner 3192f25948
gnu: zimg: Remove extra build phase. 
* gnu/packages/image.scm (zimg)[arguments]: Remove unneeded 'autogen
phase.
 2019-08-07 20:06:00 +03:00
Efraim Flashner 384242adf1
gnu: leptonica: Remove extra build phase. 
* gnu/packages/image.scm (leptonica)[arguments]: Remove unneeded
'autogen phase.
 2019-08-07 20:06:00 +03:00
Efraim Flashner a491856f2a
gnu: ghmm: Remove extra build phase. 
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded
'autogen phase.
 2019-08-07 20:05:59 +03:00
Efraim Flashner e3a699380e
gnu: ghmm: Update source file-name field. 
* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name
field to include '-checkout' string.
 2019-08-07 20:05:59 +03:00
Efraim Flashner 1f53fdae82
gnu: dovecot-libsodium-plugin: Remove extra build phase. 
* gnu/packages/mail.scm (dovecot-libsodium-plugin)[arguments]: Remove
unneeded 'autogen phase.
 2019-08-07 20:05:59 +03:00
Efraim Flashner 7b0efd4c32
gnu: dovecot-trees: Remove extra build phase. 
* gnu/packages/mail.scm (dovecot-trees)[arguments]: Remove unneeded
'autogen phase.
 2019-08-07 20:05:58 +03:00
Efraim Flashner 02abfcca46
gnu: libetpan: Rework custom phases. 
* gnu/packages/mail.scm (libetpan)[arguments]: Use custom 'autogen phase
to replace 'boostrap phase.
 2019-08-07 20:05:58 +03:00
Efraim Flashner 1d05b683ef
gnu: libmediainfo: Remove extra build phase. 
* gnu/packages/video.scm (libmediainfo)[arguments]: Remove unneeded
'autogen phase.
 2019-08-07 20:05:58 +03:00
Efraim Flashner d05e607c9d
gnu: libsmpeg: Remove extra build phase. 
* gnu/packages/video.scm (libsmpeg)[arguments]: Remove unnecessary
'autogen phase.
 2019-08-07 20:05:57 +03:00
Efraim Flashner 2230039427
gnu: vapoursynth: Remove extra build phase. 
* gnu/packages/video.scm (vapoursynth)[arguments]: Remove unneeded
'autogen phase.
 2019-08-07 20:05:57 +03:00
Efraim Flashner fe7023a744
gnu: i3blocks: Remove extra build phase. 
* gnu/packages/wm.scm (i3blocks)[arguments]: Remove unneeded 'autogen
phase.
 2019-08-07 20:05:57 +03:00
Efraim Flashner db736ca20c
gnu: ocproxy: Remove extra build phase. 
* gnu/packages/vpn.scm (ocproxy)[arguments]: Remove unneeded 'autogen
phase.
 2019-08-07 20:05:57 +03:00
Efraim Flashner 0d7f282b02
gnu: openconnect: Fix propagated-inputs. 
* gnu/packages/vpn.scm (openconnect)[inputs]: Move libxml2, gnutls,
zlib ...
[propagated-inputs]: ... to here.
 2019-08-07 20:05:56 +03:00
Ricardo Wurmus 9fa7c20be9
gnu: gnome-maps: Fix runtime error. 
Fixes <https://bugs.gnu.org/35761>.

* gnu/packages/geo.scm (gnome-maps)[arguments]: Add lib output of
gnome-online-accounts and geocode-glib to LD_LIBRARY_PATH.
[inputs]: Add gnome-online-accounts:lib.
 2019-08-07 19:03:19 +02:00
Ricardo Wurmus fdc0688cba
gnu: r-dt: Update to 0.8. 
* gnu/packages/statistics.scm (r-dt): Update to 0.8.
[propagated-inputs]: Add r-jsonlite.
 2019-08-07 12:54:43 +02:00
Ricardo Wurmus 42a8b01d15
gnu: r-epi: Update to 2.38. 
* gnu/packages/cran.scm (r-epi): Update to 2.38.
 2019-08-07 12:54:43 +02:00
Ricardo Wurmus 2132e92261
gnu: r-ggpubr: Update to 0.2.2. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.2.
[propagated-inputs]: Add r-rlang.
 2019-08-07 12:54:43 +02:00
Ricardo Wurmus 33af00eea4
gnu: r-tinytex: Update to 0.15. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.15.
 2019-08-07 12:54:43 +02:00
Ricardo Wurmus f503ed92d2
gnu: r-servr: Update to 0.15. 
* gnu/packages/cran.scm (r-servr): Update to 0.15.
 2019-08-07 12:54:43 +02:00
Rutger Helling 18e700517e
gnu: dolphin-emu: Update to commit 24718c1. 
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 24718c1.
 2019-08-07 08:15:28 +02:00
Mark H Weaver 9d52e3f3d5
gnu: linux-libre: Update to 5.2.7. 
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.7.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
 2019-08-07 00:28:32 -04:00
Mark H Weaver 9f90e58c4a
gnu: linux-libre@4.19: Update to 4.19.65. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.65.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
 2019-08-07 00:28:30 -04:00
Mark H Weaver 7acea31bbc
gnu: linux-libre@4.14: Update to 4.14.137. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.137.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
 2019-08-07 00:28:28 -04:00
Mark H Weaver 2b6c7a7cbc
gnu: linux-libre@4.9: Update to 4.9.188. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.188.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
 2019-08-07 00:28:12 -04:00
Mark H Weaver ad6814557e
gnu: linux-libre@4.4: Update to 4.4.188. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.188.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
 2019-08-07 00:23:20 -04:00
Ricardo Wurmus f2758945fe
gnu: r-ggplotify: Update to 0.0.4. 
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.4.
 2019-08-06 23:38:22 +02:00
Ricardo Wurmus 5fe9ce982d
gnu: r-bayestestr: Update to 0.2.5. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.5.
 2019-08-06 23:38:22 +02:00
Christopher Baines ec405a4b01
gnu: perl-hash-merge: Change inputs to propagated-inputs. 
Clone::Choose is required at runtime, so this input needs to be
propagated. This change fixes the sqitch package.

* gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to
propagated-inputs.
 2019-08-06 19:53:51 +01:00
Rutger Helling 86445c8e35
gnu: ffmpeg: Update to 4.2. 
* gnu/packages/video.scm (ffmpeg): Update to 4.2.
[inputs]: Add dav1d.
* gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance.
 2019-08-06 18:59:28 +02:00
Marius Bakke 58e37b5441
gnu: nss: Fix build failure on armhf-linux. 
Fixes <https://bugs.gnu.org/36930>.

* gnu/packages/patches/nss-freebl-stubs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/nss.scm (nss)[source](patches): Add it.
 2019-08-06 17:06:57 +02:00
Ricardo Wurmus b120789193
gnu: r-rsubread: Update to 1.34.6. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus d6158ecb3b
gnu: r-abaenrichment: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus fbe5a0872f
gnu: r-atacseqqc: Update to 1.8.5. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus fcbd8960c2
gnu: r-genomicinteractions: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus 109b8ad5f9
gnu: r-chippeakanno: Update to 3.18.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus c8e141ab02
gnu: r-msnid: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus afe4be49f1
gnu: r-rcas: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1.
 2019-08-06 15:49:00 +02:00
Ricardo Wurmus 76d9b08e1b
gnu: r-genomicfeatures: Update to 1.36.4. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus e16fe0b50a
gnu: r-rtracklayer: Update to 1.44.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus 6f8760d9f8
gnu: r-summarizedexperiment: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus 2ebd2b440d
gnu: r-biomart: Update to 2.40.3. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.3.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus fbd761fe9b
gnu: r-limma: Update to 3.40.6. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.6.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus 8a5f9d3d56
gnu: r-edger: Update to 3.26.6. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.6.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus 00300de5d0
gnu: r-xgboost: Update to 0.90.0.2. 
* gnu/packages/cran.scm (r-xgboost): Update to 0.90.0.2.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus 6fa5987606
gnu: r-citr: Update to 0.3.1. 
* gnu/packages/cran.scm (r-citr): Update to 0.3.1.
[propagated-inputs]: Remove r-bibtex.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus 5b87fae3f8
gnu: r-enrichr: Update to 2.0. 
* gnu/packages/cran.scm (r-enrichr): Update to 2.0.
 2019-08-06 15:48:59 +02:00
Ricardo Wurmus 006c3dc386
gnu: r-dalex: Update to 0.4.4. 
* gnu/packages/cran.scm (r-dalex): Update to 0.4.4.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 22d556a8e1
gnu: r-bookdown: Update to 0.12. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.12.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 1a88de187b
gnu: r-ldheatmap: Update to 0.99-7. 
* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-7.
[propagated-inputs]: Add r-rcpp.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 2deb1529a2
gnu: r-sf: Update to 0.7-7. 
* gnu/packages/cran.scm (r-sf): Update to 0.7-7.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 4eed03ea41
gnu: r-deldir: Update to 0.1-23. 
* gnu/packages/cran.scm (r-deldir): Update to 0.1-23.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 24d439868b
gnu: r-classint: Update to 0.4-1. 
* gnu/packages/cran.scm (r-classint): Update to 0.4-1.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 8518744ec4
gnu: r-rematch2: Update to 2.1.0. 
* gnu/packages/cran.scm (r-rematch2): Update to 2.1.0.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus bd00835630
gnu: r-irkernel: Update to 1.0.2. 
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.2.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 51c9504ba6
gnu: r-lavaan: Update to 0.6-4. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-4.
 2019-08-06 15:48:58 +02:00
Ricardo Wurmus 01629c665b
gnu: r-bayesm: Update to 3.1-3. 
* gnu/packages/cran.scm (r-bayesm): Update to 3.1-3.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus eebd93eb6b
gnu: r-rsvd: Update to 1.0.2. 
* gnu/packages/cran.scm (r-rsvd): Update to 1.0.2.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus d5d631b650
gnu: r-future: Update to 1.14.0. 
* gnu/packages/cran.scm (r-future): Update to 1.14.0.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus ffb97e695c
gnu: r-spatialextremes: Update to 2.0-7.2. 
* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-7.2.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus 504a51369f
gnu: r-bigrquery: Update to 1.2.0. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.2.0.
[propagated-inputs]: Add r-gargle and r-rlang.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus 6275418b6f
gnu: Add r-gargle. 
* gnu/packages/cran.scm (r-gargle): New variable.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus 031afc4890
gnu: r-shades: Update to 1.4.0. 
* gnu/packages/cran.scm (r-shades): Update to 1.4.0.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus 12618b5080
gnu: r-rnifti: Update to 0.11.1. 
* gnu/packages/cran.scm (r-rnifti): Update to 0.11.1.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus b154b02620
gnu: r-flare: Update to 1.6.0.2. 
* gnu/packages/cran.scm (r-flare): Update to 1.6.0.2.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus e0f20dce62
gnu: r-sparsesvd: Update to 0.2. 
* gnu/packages/cran.scm (r-sparsesvd): Update to 0.2.
 2019-08-06 15:48:57 +02:00
Ricardo Wurmus 14148ef1ee
gnu: r-tidytree: Update to 0.2.5. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.5.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus ef93e90fae
gnu: r-rgl: Update to 0.100.26. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.26.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus 65555b1d08
gnu: r-afex: Update to 0.24-1. 
* gnu/packages/cran.scm (r-afex): Update to 0.24-1.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus 99765abb13
gnu: r-usethis: Update to 1.5.1. 
* gnu/packages/cran.scm (r-usethis): Update to 1.5.1.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus a5a64814b2
gnu: r-sjplot: Update to 2.7.0. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.7.0.
[propagated-inputs]: Add r-ggrepel.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus 7343fa8ecb
gnu: r-ggeffects: Update to 0.11.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.11.0.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus 5ae4cbb656
gnu: r-performance: Update to 0.3.0. 
* gnu/packages/cran.scm (r-performance): Update to 0.3.0.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus 5357c59bf3
gnu: r-emmeans: Update to 1.4. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.
 2019-08-06 15:48:56 +02:00
Ricardo Wurmus 332c8df6f0
gnu: r-magick: Update to 2.1. 
* gnu/packages/cran.scm (r-magick): Update to 2.1.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus 2634febacd
gnu: r-raster: Update to 2.9-23. 
* gnu/packages/cran.scm (r-raster): Update to 2.9-23.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus a510dc6091
gnu: r-proc: Update to 1.15.3. 
* gnu/packages/cran.scm (r-proc): Update to 1.15.3.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus 44de742e37
gnu: r-insight: Update to 0.4.1. 
* gnu/packages/cran.scm (r-insight): Update to 0.4.1.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus 72c967e2ea
gnu: r-abn: Update to 2.1. 
* gnu/packages/cran.scm (r-abn): Update to 2.1.
[propagated-inputs]: Remove r-cairo.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus c187e8f65d
gnu: r-factominer: Update to 1.42. 
* gnu/packages/cran.scm (r-factominer): Update to 1.42.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus 2d363778d4
gnu: r-reticulate: Update to 1.13. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.13.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus e3abc134e8
gnu: r-dosnow: Update to 1.0.18. 
* gnu/packages/cran.scm (r-dosnow): Update to 1.0.18.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus cc7176cc2c
gnu: r-zip: Update to 2.0.3. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.3.
 2019-08-06 15:48:55 +02:00
Ricardo Wurmus 9c69d79744
gnu: r-radiant-data: Update to 1.0.0. 
* gnu/packages/cran.scm (r-radiant-data): Update to 1.0.0.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus dbd3950a3f
gnu: r-shinyace: Update to 0.4.0. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.4.0.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus 9f8f2d9b14
gnu: r-pillar: Update to 1.4.2. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.2.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus 56444d1852
gnu: r-vctrs: Update to 0.2.0. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.0.
[propagated-inputs]: Add r-ellipsis.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus 503d5b5a75
gnu: r-processx: Update to 3.4.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.4.1.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus 70980197aa
gnu: r-vioplot: Update to 0.3.2. 
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.2.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus 83e3e72a30
gnu: r-hardyweinberg: Update to 1.6.3. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.3.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus 04d42a9de1
gnu: r-mice: Update to 3.6.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.6.0.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus bed3424619
gnu: r-jomo: Update to 2.6-9. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-9.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus 417f7ed58d
gnu: r-recipes: Update to 0.1.6. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.6.
[propagated-inputs]: Remove r-rcpproll.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus a80620b96d
gnu: r-geometry: Update to 0.4.2. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.2.
[propagated-inputs]: Add r-linprog.
 2019-08-06 15:48:54 +02:00
Ricardo Wurmus f3640cee10
gnu: Add r-linprog. 
* gnu/packages/cran.scm (r-linprog): New variable.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus 099b7c55bb
gnu: r-lava: Update to 1.6.6. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.6.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus 3337fd1dce
gnu: r-energy: Update to 1.7-6. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-6.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus 80cdd36fe8
gnu: r-lpsolve: Update to 5.6.13.2. 
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.2.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus 4522ec869b
gnu: r-rcpp: Update to 1.0.2. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.2.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus cd7e9fb161
gnu: r-pkgbuild: Update to 1.0.4. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.4.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus b89805fe14
gnu: r-haven: Update to 2.1.1. 
* gnu/packages/cran.scm (r-haven): Update to 2.1.1.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus b44c12057b
gnu: r-curl: Update to 4.0. 
* gnu/packages/cran.scm (r-curl): Update to 4.0.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus 3e0128ec36
gnu: r-callr: Update to 3.3.1. 
* gnu/packages/cran.scm (r-callr): Update to 3.3.1.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus 6a04f25faf
gnu: r-ellipsis: Update to 0.2.0.1. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.2.0.1.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus 710ecc9ceb
gnu: r-clipr: Update to 0.7.0. 
* gnu/packages/cran.scm (r-clipr): Update to 0.7.0.
 2019-08-06 15:48:53 +02:00
Ricardo Wurmus d36430d274
gnu: r-desolve: Update to 1.24. 
* gnu/packages/maths.scm (r-desolve): Update to 1.24.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 17e43c425d
gnu: r-quantreg: Update to 5.42.1. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.42.1.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 599fbee5fb
gnu: r-pbapply: Update to 1.4-1. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-1.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 0910ff0cfc
gnu: r-robust: Update to 0.4-18.1. 
* gnu/packages/statistics.scm (r-robust): Update to 0.4-18.1.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus ddfd0afb2a
gnu: r-mclust: Update to 5.4.5. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.5.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 58aa971fbd
gnu: r-fastica: Update to 1.2-2. 
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-2.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus db93ef0948
gnu: r-cowplot: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.0.0.
[propagated-inputs]: Remove r-plyr; add r-rlang.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus b2fea05954
gnu: r-rngtools: Update to 1.4. 
* gnu/packages/statistics.scm (r-rngtools): Update to 1.4.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 8d84a0ad70
gnu: r-domc: Update to 1.3.6. 
* gnu/packages/statistics.scm (r-domc): Update to 1.3.6.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 862959813f
gnu: r-doparallel: Update to 1.0.15. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.15.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 5a01128f45
gnu: r-foreach: Update to 1.4.7. 
* gnu/packages/statistics.scm (r-foreach): Update to 1.4.7.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus b41d03dd35
gnu: r-iterators: Update to 1.0.12. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.12.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 90752043dd
gnu: r-rsqlite: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.2.
 2019-08-06 15:48:52 +02:00
Ricardo Wurmus 2de0f885f4
gnu: r-blob: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-blob): Update to 1.2.0.
[propagated-inputs]: Add r-rlang and r-vctrs; remove r-tibble.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus feb261ee9b
gnu: r-rmarkdown: Update to 1.14. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.14.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 6af62ad50a
gnu: r-rcpparmadillo: Update to 0.9.600.4.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.600.4.0.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 9b02d1c836
gnu: r-hms: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-hms): Update to 0.5.0.
[propagated-inputs]: Add r-vctrs.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 78896ba23b
gnu: r-devtools: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.1.0.
[propagated-inputs]: Add r-roxygen2 and r-testthat.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 1df87085e3
gnu: r-git2r: Update to 0.26.1. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.26.1.
[inputs]: Remove libssh2 and openssl; add libgit2.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 9236b2c144
gnu: r-httr: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.1.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 3511aff992
gnu: r-openssl: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.1.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus c02bb7e901
gnu: r-checkmate: Update to 1.9.4. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.4.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus b29ecb8e37
gnu: r-xml2: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.1.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 8d932e71d6
gnu: r-coda: Update to 0.19-3. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-3.
 2019-08-06 15:48:51 +02:00
Ricardo Wurmus 7d36001bd2
gnu: r-dplyr: Update to 0.8.3. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.3.
 2019-08-06 15:48:50 +02:00
Ricardo Wurmus eae8e56a64
gnu: r-testthat: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.2.1.
[propagated-inputs]: Add r-evaluate.
 2019-08-06 15:48:50 +02:00
Ricardo Wurmus c2e85d0265
gnu: r-digest: Update to 0.6.20. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.20.
 2019-08-06 15:48:50 +02:00
Ricardo Wurmus d6e54e7002
gnu: r-nlme: Update to 3.1-141. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-141.
 2019-08-06 15:48:50 +02:00
Ricardo Wurmus ecebfe51ce
gnu: r-foreign: Update to 0.8-72. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-72.
 2019-08-06 15:48:50 +02:00
Ricardo Wurmus 6eccb0879f
gnu: r-boot: Update to 1.3-23. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-23.
 2019-08-06 15:48:50 +02:00
Rutger Helling 49fd98bf65
gnu: faudio: Update to 19.08. 
* gnu/packages/audio.scm (faudio): Update to 19.08.
 2019-08-06 13:09:23 +02:00
Rutger Helling 932f795c0e
gnu: kitty: Update to 0.14.3. 
* gnu/packages/terminals.scm (kitty): Update to 0.14.3.
[inputs]: Add libcanberra.
 2019-08-06 13:06:25 +02:00
Ricardo Wurmus 378d94e51b
Merge remote-tracking branch 'origin/master' into wip-texlive 2019-08-06 10:07:36 +02:00
Brian Leung 6a5198170e
gnu: emacs-ivy: Update to 0.12.0-1.d3e4514. 
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.12.0-1.d3e4514.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-06 09:41:44 +02:00
Mark H Weaver aac6c53a7b
gnu: libmad: Add more security fixes from Debian. 
Includes fixes for CVE-2017-8372, CVE-2017-8373, and CVE-2017-8374.

Reported by <marit@secmail.pro> in <https://bugs.gnu.org/36909>.

* gnu/packages/patches/libmad-frame-length.patch: Delete file.
* gnu/packages/patches/libmad-length-check.patch,
gnu/packages/patches/libmad-md_size.patch: New files.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/mp3.scm (libmad)[source]: Update patches accordingly.
 2019-08-06 03:18:24 -04:00
Rutger Helling b0c48829b6
gnu: flatpak: Update to 1.4.2. 
* gnu/packages/package-management.scm (flatpak): Update to 1.4.2.
 2019-08-06 08:25:35 +02:00
Marius Bakke 2426e2c94c
gnu: strace: Fix test failures on some systems. 
* gnu/packages/patches/strace-ipc-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (strace)[source](patches): New field.
[arguments]: Add 'regenerate-tests' phase.

Co-Authored-By: Mark H Weaver <mhw@netris.org>
 2019-08-06 02:17:38 -04:00
Tobias Geerinckx-Rice 96681d4be1
gnu: terminator: Wrap instead of propagating GSettings schemas. 
* gnu/packages/gnome.scm (terminator)[inputs]:
Move gsettings-desktop-schemas back here…
[propagated-inputs]: …from here.
[arguments]: Add the glib-or-gtk-build-system's ‘glib-or-gtk-wrap’
phase.
 2019-08-05 22:18:57 +02:00
Tobias Geerinckx-Rice 7b88b71120
gnu: libvirt: Update to 5.6.0. 
* gnu/packages/virtualization.scm (libvirt): Update to 5.6.0.
[source]: Remove patch.
* gnu/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-08-05 21:03:31 +02:00
Tobias Geerinckx-Rice d866acca9a
gnu: python-libvirt: Update to 5.6.0. 
* gnu/packages/virtualization.scm (python-libvirt): Update to 5.6.0.
 2019-08-05 21:03:31 +02:00
Mark H Weaver 0fae1b6dee
Revert "gnu: nss: Update to 3.45 [security fixes]." 
This reverts commit 95580bda05.

Note that the security fixes mentioned in that commit were already
present in NSS 3.44.1, which is the version that's now reinstated
by this revert.  The rationale for this revert is that NSS 3.45 fails
to build on armhf-linux.
 2019-08-05 12:45:22 -04:00
Rutger Helling c94884bcc1
gnu: wine: Adapt Intel Vulkan on i686-linux. 
* gnu/packages/wine.scm (wine)[arguments]: Adjust to also provide Vulkan on
i686-linux for Intel.
* gnu/packages/wine.scm (wine64)[arguments]: Adjust to also provide Vulkan on
i686-linux for Intel.
* gnu/packages/wine.scm (wine-staging)[arguments]: Adjust to also provide
Vulkan on i686-linux for Intel.
* gnu/packages/wine.scm (wine64-staging)[arguments]: Adjust to also provide
Vulkan on i686-linux for Intel.
 2019-08-05 16:47:36 +02:00
Brian Leung e15ec8bcec
gnu: emacs-org-super-agenda: Update to 1.1.1-1.375bde4. 
* gnu/packages/emacs-xyz.scm (emacs-org-super-agenda): Update to
1.1.1-1.375bde4.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:19:03 +02:00
Brian Leung 4d48e277ca
gnu: Add emacs-org-sidebar. 
* gnu/packages/emacs-xyz.scm (emacs-org-sidebar): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:17:46 +02:00
Brian Leung 003d153783
gnu: emacs-dired-hacks: Update to 0.0.1-2.886befe. 
* gnu/packages/emacs-xyz.scm (emacs-dired-hacks): Update to 0.0.1-2.886befe.
[description]: Use full sentences.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:16:59 +02:00
Brian Leung f94ae7d472
gnu: Add emacs-nswbuff. 
* gnu/packages/emacs-xyz.scm (emacs-nswbuff): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:15:44 +02:00
Brian Leung 12dd1a4838
gnu: Add emacs-company-math. 
* gnu/packages/emacs-xyz.scm (emacs-company-math): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:15:00 +02:00
Brian Leung 16fdde79ec
gnu: Add emacs-math-symbol-lists. 
* gnu/packages/emacs-xyz.scm (emacs-math-symbol-lists): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:13:58 +02:00
Brian Leung c07f3113d9
gnu: Add emacs-hercules. 
* gnu/packages/emacs-xyz.scm (emacs-hercules): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:12:59 +02:00
Brian Leung d052e51b57
gnu: Add emacs-mc-extras. 
* gnu/packages/emacs-xyz.scm (emacs-mc-extras): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:12:09 +02:00
Brian Leung 594d60a3f4
gnu: emacs-nodejs-repl: Update to 0.2.2. 
* gnu/packages/emacs-xyz.scm (emacs-nodejs-repl): Update to 0.2.2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:09:52 +02:00
Brian Leung 365e94c019
gnu: emacs-counsel-etags: Update to 1.8.7. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-etags): Update to 1.8.7.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:09:37 +02:00
Brian Leung 10989c59cb
gnu: emacs-lua-mode: Update to 20151025-2.95c64bb. 
* gnu/packages/emacs-xyz.scm (emacs-lua-mode): Update to 20151025-2.95c64bb.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:08:30 +02:00
Brian Leung f48aa64ea8
gnu: emacs-evil-expat: Update to 0.0.1-1.f4fcd0a. 
* gnu/packages/emacs-xyz.scm (emacs-evil-expat): Update to 0.0.1-1.f4fcd0a.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:07:09 +02:00
Brian Leung fef08850b7
gnu: emacs-so-long: Update to 1.0-2.cfae473. 
* gnu/packages/emacs-xyz.scm (emacs-so-long): Update to 1.0-2.cfae473.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:05:26 +02:00
Brian Leung aca6091b05
gnu: emacs-highlight-indentation: Update to 0.7.0-1.d03803f. 
* gnu/packages/emacs-xyz.scm (emacs-highlight-indentation): Update to
0.7.0-1.d03803f.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:04:27 +02:00
Brian Leung 76c2e51017
gnu: Add emacs-dired-toggle-sudo. 
* gnu/packages/emacs-xyz.scm (emacs-dired-toggle-sudo): New variable.
* gnu/packages/patches/emacs-dired-toggle-sudo-emacs-26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 16:02:05 +02:00
Brian Leung 1a24d8b347
gnu: Add emacs-helm-org-rifle. 
* gnu/packages/emacs-xyz.scm (emacs-helm-org-rifle): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 15:47:00 +02:00
Brian Leung 1239146613
gnu: emacs-magit-todos: Update to 1.3. 
* gnu/packages/emacs-xyz.scm (emacs-magit-todos): Update to 1.3.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 15:45:54 +02:00
Brian Leung 0074b1e96c
gnu: Add emacs-scroll-on-drag. 
* gnu/packages/emacs-xyz.scm (emacs-scroll-on-drag): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 15:45:24 +02:00
Brian Leung 91b351de53
gnu: Add emacs-evil-traces. 
* gnu/packages/emacs-xyz.scm (emacs-evil-traces): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 15:43:05 +02:00
Brian Leung 7fb91e4f36
gnu: emacs-helm: Update to 3.3. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.3.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-08-05 15:40:37 +02:00