* guix/ui.scm (display-profile-content-diff): New variable.
* guix/scripts/package.scm (process-query): Use display-profile-content-diff.
In collaboration with Benz Schenk.
* guix/scripts/lint.scm (%quoted-identifier-rx): New variable.
(check-description-style)[check-quotes]: New procedure.
Use it.
* tests/lint.scm ("description: suggest ornament instead of quotes"):
New test.
* guix/scripts/build.scm (evaluate-replacement-specs): New procedure.
(transform-package-inputs)[not-equal]: Remove.
[replacements]: Define in terms of 'evaluate-replacement-specs'.
* guix/scripts/graph.scm (ensure-store-items): New procedure.
(%reference-node-type)[convert]: Use it.
(non-derivation-referrers): New procedure.
(%referrer-node-type): New variable.
(%node-types): Add it.
* tests/graph.scm ("referrer DAG"): New test.
* doc/guix.texi (Invoking guix graph): Document it.
'guix substitute' now displays 2 lines per download instead of 4.
Suggested by Ricardo Wurmus.
* guix/scripts/substitute.scm (assert-valid-narinfo): Have #:verbose?
default to #f. Remove leading newline in message.
(process-substitution): Display the URI rather than the store file name.
Display two newlines after the substitution.
Before that, when 'guix system reconfigure' failed to talk to shepherd
and a 'system-error' was raised, we would get a "too few values returned
to continuation" error, which would prevent GRUB from being installed.
Reported by fps on #guix.
* guix/scripts/system.scm (warn-on-system-error): Remove.
(with-shepherd-error-handling): Inline former 'warn-on-system-error'.
Return two values when 'system-error' is raised.
Before, 'guix lint -c cve' would report the vulnerabilities of the
original package while pretending they are the vulnerabilities of the
replacement.
* guix/scripts/lint.scm (check-vulnerabilities): Consider the package
replacement before calling 'package-vulnerabilities'.
* tests/lint.scm ("cve: vulnerability fixed in replacement version"):
New test.
Fixes <http://bugs.gnu.org/24346>.
Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama).
* guix/scripts/system.scm (previous-grub-entries): Get the initrd file
name from PARAMS.
* gnu/system.scm (operating-system-grub.cfg): Use
'operating-system-initrd-file' to retrieve the initrd file name.
* gnu/system/grub.scm (strip-mount-point): New procedure.
(grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for
LINUX and INITRD.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
This provides a way to mark a package as superseded by another one.
Upgrades replace superseded packages with their replacement.
* guix/packages.scm (package-superseded, deprecated-package): New
procedures.
* gnu/packages.scm (%find-package): Check for 'package-superseded'.
* guix/scripts/package.scm (transaction-upgrade-entry)[supersede]: New
procedure. Call it when 'package-superseded' is true.
* tests/guix-build.sh: Add test for a superseded package.
* tests/packages.scm ("package-superseded")
("transaction-upgrade-entry, superseded package"): New tests.
* guix/scripts/package.scm (upgraded-manifest-entry): Rename to...
(transaction-upgrade-entry): ... this. Add 'transaction' parameter and
return a transaction.
(options->installable): Likewise.
[to-upgrade]: Rename to...
[upgraded]: ... this, and change to be a transaction. Return a
transaction.
(options->removable): Likewise.
(process-actions): Adjust accordingly.
* tests/packages.scm ("transaction-upgrade-entry, zero upgrades")
("transaction-upgrade-entry, one upgrade"): New tests.
* guix/scripts/package.scm (upgradeable?): Rename to...
(upgraded-manifest-entry): ... this. Change to take a <manifest-entry>
and to return a <manifest-entry>.
(options->installable)[to-upgrade]: Adjust accordingly.
* guix/scripts/system.scm (service-upgrade): Move to...
* gnu/services/shepherd.scm (shepherd-service-upgrade): ... here.
* tests/system.scm ("service-upgrade: nothing to do", "service-upgrade:
one unchanged, one upgraded, one new", "service-upgrade: service
depended on is not unloaded", "service-upgrade: obsolete services that
depend on each other"): Move to...
* tests/services.scm: ... here. Adjust to 'service-upgrade' rename.
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2016-08/msg01470.html>.
* guix/scripts/system.scm (service-upgrade)[live-service-required?]: New
procedure.
[obsolete?]: Use it.
* tests/system.scm ("service-upgrade: service depended on is not
unloaded", "service-upgrade: obsolete services that depend on each
other"): New tests.
* guix/scripts/system.scm (service-upgrade)[essential?]: SERVICE is now
a <live-service>.
[lookup-target, lookup-live, running?, stopped, obsolete?]: New
procedures.
[to-load, to-unload]: Use them. TO-UNLOAD is now a list of
<live-service>.
(call-with-service-upgrade-info): Extract symbols from TO-UNLOAD.
* tests/system.scm ("service-upgrade: one unchanged, one upgraded, one
new"): Adjust accordingly.
* guix/scripts/system.scm (service-upgrade): New procedure, with code
from...
(call-with-service-upgrade-info): ... here. Use it.
* tests/system.scm (live-service, service-upgrade): New variables.
("service-upgrade: nothing to do", "service-upgrade: one unchanged, one
upgraded, one new"): New tests.
* gnu/services/herd.scm (<live-service>): New record type.
(current-services): Change to return a single value: #f or a list of
<live-service>.
* guix/scripts/system.scm (call-with-service-upgrade-info): Adjust
accordingly.
* gnu/tests/base.scm (run-basic-test)["shepherd services"]: Adjust
accordingly.
* guix/scripts/lint.scm (check-description-style): Emit a warning if
trademark signs found in description.
* tests/lint.scm (description: may not contain trademark signs): Add
test.
* guix/scripts/archive.scm, guix/scripts/build.scm,
guix/scripts/environment.scm, guix/scripts/system.scm,
guix/scripts/package.scm: Disable grafting when a dry-run parameter is given.
Fixes <https://bugs.gnu.org/23881>.
* guix/scripts/system.scm (previous-grub-entries)
(display-system-generation): Handle the case where the root device is
specified by UUID.
Fixes regression introduced in 8bf92e3904.
Reported by myglc2 <myglc2@gmail.com> in <http://bugs.gnu.org/24135>.
* guix/scripts/system.scm (with-shepherd-error-handling): Rename 'body'
to 'mbody'. Expand to a monadic procedure that runs MBODY.
* guix/gnu-maintenance.scm (kde-package?, latest-kde-release): New private
functions.
(%kde-updater): New public variable.
* guix/scripts/refresh.scm (list-updaters): Add %kde-updater.
* doc/guix.texi (Invoking guix refresh): Mention the new updater.
* guix/scripts/publish.scm (narinfo-string): Force %NO-COMPRESSION when
STORE-PATH matches 'compressed-file?'.
* guix/utils.scm (compressed-file?): New procedure.
* tests/publish.scm ("/*.narinfo for a compressed file"): New test.
Fixes 'guix size foo bar' when 'foo' is in the local store and 'bar'
isn't, which could lead to an incomplete requisite list.
* guix/scripts/size.scm (requisites*): Partition ITEMS according to
'valid-path?'. Use 'substitutable-requisites' only on invalid items.
* guix/scripts/environment.scm (create-environment): Set
'GUIX_ENVIRONMENT' to PROFILE.
* tests/guix-environment.sh: Test it.
* doc/guix.texi (Invoking guix environment): Document it.
* guix/scripts/publish.scm (show-help, %options): Add '--compression'.
(<compression>): New record type.
(%no-compression, %default-gzip-compression): New variables.
(%default-options): Add 'compression' key.
(narinfo-string): Add #:compression parameter and honor it.
(render-narinfo): Likewise.
(render-nar): Likewise.
<top level>: Add call to 'declare-header!'.
(swallow-zlib-error): New macro.
(nar-response-port): New procedure.
(http-write): Add call to 'force-output'. Use 'nar-response-port'
instead of 'response-port'. Use 'swallow-zlib-error'.
(make-request-handler): Add #:compression parameter and honor it. Add
"nar/gzip" URL handler.
(run-publish-server): Add #:compression parameter and honor it.
(guix-publish): Honor --compression.
* tests/publish.scm (http-get-port, wait-until-ready): New procedures.
<top level>: Run main server with "-C0". Call 'wait-until-ready'.
("/nar/gzip/*", "/*.narinfo with compression"): New tests.
* doc/guix.texi (Invoking guix publish): Document it.
Previously, using something like
"--substitute-urls=http://example.org///" would lead to a
'cache-narinfo!' call with #f as its second argument.
It would also do the wrong thing for URLs with a non-empty initial path
component, such as "http://example.org/foo/bar".
* guix/scripts/substitute.scm (fetch-narinfos)[handle-narinfo-response]:
Add call to 'basename' for PATH.
* guix/scripts/lint.scm (validate-uri): Upon 200 http-response, check
the 'response-content-length' and emit a warning when it is <= 1000.
* tests/lint.scm (call-with-http-server): Add 'data' parameter.
(with-http-server): Likewise.
(%long-string): New variable.
("home-page: 200"): Pass %LONG-STRING to 'with-http-server'.
("home-page: 404", "source: 200", "source: 404"): Likewise.
("home-page: 200 but short length"): New test.
("source: 200 but short length"): New test.
This is a followup to ea0c6e0507.
* guix/scripts/substitute.scm (%narinfo-cache-directory): Use
'cache-directory' when (getuid) returns non-zero.
(cache-narinfo!): Remove 'catch'.
* guix/scripts/publish.scm (show-help, %options): Add --ttl.
(render-narinfo): Add #:ttl and honor it.
(make-request-handler): Add #:narinfo-ttl and honor it.
(run-publish-server): Likewise.
(guix-publish): Honor --ttl, pass it to 'run-publish-server'.
Fixes <http://bugs.gnu.org/21888>.
Reported by iyzsong@member.fsf.org (宋文武).
* guix/scripts/publish.scm (narinfo-string): Use
'encode-and-join-uri-path' instead of 'string-append' to compute URL.
* tests/publish.scm ("/*.narinfo with properly encoded '+' sign"):
("/nar/ with properly encoded '+' sign"): New tests.
Previously, 'guix package -i emacs --with-source=./emacs-42.tar.gz'
would fail to use "42" as the version number in the manifest entry.
Reported by piyo on #guix.
* guix/scripts/package.scm (process-actions)[transform-entry]: Inherit
the version number from the result of TRANSFORM when it's a package.
* tests/guix-package.sh: Test it.
* guix/scripts/size.scm (display-profile): Display WHOLE at then end.
(guix-size): Accept several FILES.
* doc/guix.texi (Invoking guix size): Add example with several items.
Before, something like:
echo have /gnu/foo | ./test-env guix substitute --query
would lead to an ugly backtrace.
* guix/scripts/substitute.scm (narinfo-cache-file): Call 'leave' when
'store-hash-part' returns #f.
Previously, something like 'guix import gnu which' would spit out a
backtrace if, say, the 'which' tarball could not be authenticated.
* guix/upstream.scm (download-tarball): Mention failure modes in
docstring.
* guix/import/gnu.scm (gnu-package->sexp): Return #f when
'download-tarball' returns #f.
* guix/scripts/import.scm (guix-import): Call 'leave' when IMPORTER does
not return a (package ...) sexp.
This makes (gnu services herd) independent of (guix ui).
* gnu/services/herd.scm (&shepherd-error, &service-not-found-error)
(&action-not-found-error, &action-exception-error)
(&unknown-shepherd-error): New error condition types.
(report-action-error): Remove.
(raise-shepherd-error): New procedure.
(display-message): Do not use 'info' and '_'.
(invoke-action): Use 'raise-shepherd-error' instead of
'report-action-error'. Do not use 'warning'.
(current-services): Do not use 'warning'.
* guix/scripts/system.scm (with-shepherd-error-handling): New macro.
(report-shepherd-error, call-with-service-upgrade-info): New
procedures.
(upgrade-shepherd-services): Use it.
This reduces the size of the image produced by 'guix system vm' from
26 MiB to 9 MiB.
* gnu/system/vm.scm (system-qemu-image/shared-store):
(system-qemu-image/shared-store-script): Change the default
value of #:disk-image-size to 30 MiB when not FULL-BOOT?.
* guix/scripts/system.scm (system-derivation-for-action): Likewise for
the 'vm' action.
* guix/scripts/lint.scm (check-vulnerabilities): Check the replacement
of PACKAGE.
* tests/lint.scm ("cve: patched vulnerability in replacement"): New test.
Suggested by John Darrington <john@darrington.wattle.id.au>.
* guix/scripts/challenge.scm (guix-challenge): Exit with 2 when MISSING
is not empty.
* doc/guix.texi (Invoking guix challenge): Document it.
Suggested by John Darrington.
* guix/scripts/lint.scm (check-description-style): Emit a warning when
DESCRIPTION is not a string.
(check-synopsis-style): Likewise.
(check-gnu-synopsis+description): Likewise.
* tests/lint.scm ("description: not a string", "synopsis: not a
string"): New tests.
Suggested by Danny Milosavljevic <dannym@scratchpost.org>.
* guix/build/download.scm (nar-uri-abbreviation): New procedure.
* guix/scripts/substitute.scm (process-substitution): Use it instead of
'store-path-abbreviation'.
* guix/store.scm (set-build-options): Add #:terminal-columns parameter
and honor it.
* guix/scripts/substitute.scm (client-terminal-columns): New procedure.
(guix-substitute): Use it to parameterize 'current-terminal-columns'.
Reported by John Darrington.
* guix/scripts/challenge.scm (guix-challenge): Add an explicit 'exit'
call when ISSUES is empty.
* scripts/guix.in: Add comment about 'exit'.
* doc/guix.texi (Invoking guix challenge): Mention the behavior and exit
code.
Suggested by Leo Famulari and others.
* guix/scripts/system.scm (maybe-suggest-running-guix-pull): New
procedure.
(perform-action): Call it when ACTION is 'reconfigure.
Switching to execlp means that the process spawned in a container is PID
1, which obsoleted one of the 'guix environment --container' tests
because the init process can't be killed in the usual manner.
* guix/scripts/environment.scm (launch-environment/fork): New procedure.
(launch-environment): Switch from system* to execlp. Add handler for
SIGINT.
(guix-environment): Use launch-environment/fork.
* tests/guix-environment-container.sh: Replace abnormal exit test with
one that works now that the spawned process is PID 1.
* guix/scripts/environment.scm (launch-environment/container): Change
$HOME to the current user's home directory instead of
/homeless-shelter. Create a dummy /etc/passwd with a single entry for
the current user.
* doc/guix.texi ("invoking guix environment"): Add a note about the
dummy home directory and /etc/passwd.
* guix/scripts/build.scm: Use the right 'package-name->name+version'
procedure. Fixes a regression introduced in
1b846da8c3.
* tests/scripts-build.scm ("options->transformation, with-source, with
version"): New test.
Before that, 'guix build --substitute-urls=""' would lead to using the
daemon's own URL list instead of the empty list. The 'or*' hack, which
is to blame, had become unnecessary since commit
fb4bf72be3.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/scripts/substitute.scm (or*): Remove.
(%cache-urls): Use 'or' instead of 'or*'.
* tests/store.scm ("substitute query, alternating URLs"): Add test with
empty URL list.
* doc/guix.texi (Common Build Options): Mention the empty string.
This allows substitute servers to tell 'guix substitute' how long they
can cache narinfo lookups.
* guix/scripts/substitute.scm (cache-narinfo!): Add 'ttl' parameter.
[cache-entry]: Honor it.
(fetch-narinfos)[handle-narinfo-response]: Check the 'Cache-Control'
header of RESPONSE and pass its 'max-age' value to 'cache-narinfo!'.
* guix/scripts/substitute.scm (cached-narinfo): Expect 'narinfo' sexp
version 2 with a 'ttl' field.
(cache-narinfo!)[cache-entry]: Produce 'narinfo' sexp version 2 with a
'ttl' field.
(remove-expired-cached-narinfos)[expired?]: Read 'narinfo' sexp version 2.
The connection used to fetch /nix-cache-info is now reused for the
subsequent narinfo requests.
* guix/scripts/substitute.scm (download-cache-info)[download]: Remove.
[uri, read-cache-info]: New variables.
Rewrite in terms of 'http-fetch' instead of 'fetch'. Return an open
port in addition to a <cache-info>.
* guix/scripts/substitute.scm (http-multiple-get): Add #:port parameter
and honor it.
(fetch-narinfos)[do-fetch]: Add 'port' parameter.
Adjust to new 'download-cache-info' and 'do-fetch' signatures.
This parameter became unused with the switch to HTTP pipelining in
commit d3a652037e.
* guix/scripts/substitute.scm (fetch): Remove #:quiet-404? and adjust
accordingly.
Fixes <http://bugs.gnu.org/22937>.
Reported by Chris Marusich <cmmarusich@gmail.com>.
* guix/scripts/substitute.scm (fetch): Add 'https' alongside 'http'.
Use 'open-connection-for-uri' instead of 'open-socket-for-uri'. Call
'setvbuf' only when PORT matches 'file-port?'.
(http-multiple-get): Likewise. Change 'base-url' parameter to
'base-uri'.
(fetch-narinfos)[do-fetch]: Add 'https' case alongside 'http'. Pass URI
instead of URL to 'http-multiple-get'.
* doc/guix.texi (Requirements): Move GnuTLS one level higher and mention
HTTPS substitutes.
(Substitutes): Mention HTTPS and recommend it. Explain why servers
are not authenticated. Add "On Trusting Binaries" subsection.
Reported in <http://bugs.gnu.org/22937>
by Chris Marusich <cmmarusich@gmail.com>.
* guix/scripts/substitute.scm (fetch): Add 'else' case and call 'leave'.
This fixes a bug whereby, with grafts leading to builds very early,
build options such as --substitute-urls would not be taken into account
yet.
Reported by Andreas Enge <andreas@enge.fr>.
* guix/scripts/build.scm (guix-build): Move 'opts' to the beginning.
Use 'with-store' instead of 'open-connection'. Call
'set-build-options-from-command-line' right after 'with-store'.
Reported by Mark H Weaver.
* guix/scripts/build.scm (options->derivations): When SRC and GRAFT? are
true, use the source of P's replacement.
* tests/guix-build.sh: Add test.
This provides the ability to use numbers in package names.
Fixes <http://bugs.gnu.org/19219>.
* guix/utils.scm (package-name->name+version): New procedure.
* gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument.
Use the previous method when no package is found.
(specification->package+output, specification->package): Adapt
documentation to new syntax.
* doc/guix.texi (Invoking guix package, Invoking guix import): Likewise.
* guix/ui.scm (package-specification->name+version+output): Likewise.
* guix/scripts/import/hackage.scm (show-help): Likewise.
* tests/guix-build.sh: Adapt to new syntax.
* tests/guix-lint.sh: Likewise.
* tests/guix-package.sh: Likewise.
* tests/ui.scm ("package-specification->name+version+output"): Likewise.
* tests/utils.scm ("package-name->name+version"): Likewise.
* NEWS: Mention new syntax.
Previously 'GUIX_BUILD_OPTIONS' would be honored, but 'guix graph' does
not support the common build options.
* guix/scripts/graph.scm (guix-graph): Use 'args-fold*' instead of
'parse-command-line'.
Fixes <http://bugs.gnu.org/22139>.
* guix/grafts.scm (graft-derivation): Rename to...
(graft-derivation/shallow): ... this.
(graft-origin-file-name, item->deriver, non-self-references)
(cumulative-grafts, graft-derivation): New procedures
* tests/grafts.scm ("graft-derivation, grafted item is a direct
dependency"): Clarify title. Use 'grafted' instead of 'graft' to refer
to the grafted derivation.
("graft-derivation, grafted item is an indirect dependency")
("graft-derivation, no dependencies on grafted output"): New tests.
* guix/packages.scm (input-graft): Change to take a package instead of
an input.
(input-cross-graft): Likewise.
(fold-bag-dependencies): New procedure.
(bag-grafts): Rewrite in terms of 'fold-bag-dependencies'.
* tests/packages.scm ("package-derivation, indirect grafts"): Comment out.
* doc/guix.texi (Security Updates): Mention run-time dependencies and
recursive grafting.
* guix/store.scm (read-path-info): Use #f when we get the empty string
for DERIVER.
* guix/scripts/publish.scm (narinfo-string): Adjust accordingly.
* tests/store.scm ("path-info-deriver"): New test.
Fixes <http://bugs.gnu.org/22753>.
Reported by Mark H Weaver <mhw@netris.org>.
* guix/scripts/system.scm (save-load-path-excursion): New variable.
(upgrade-shepherd-services): Add comment about the issue.
(switch-to-system): Use 'save-load-path-excursion' around
'primitive-load' call.
Before that, /nar requests could succeed if the requested store item
exists but is invalid (although such requests were unlikely because the
corresponding narinfo request would have failed.)
* guix/scripts/publish.scm (render-nar): Add 'store' parameter. Use
'valid-path?' instead of 'file-exists?'.
(make-request-handler): Adjust 'render-nar' call accordingly.
* tests/publish.scm ("/nar/invalid"): New test.
* guix/gnu-maintenance.scm (xorg-package?, latest-xorg-release): New
private functions.
(%xorg-updater): New public variable.
* guix/scripts/refresh.scm (%updaters): Add %xorg-updater.
* doc/guix.texi (Invoking guix refresh): Mention the new updater.
Reported by Leo Famulari <leo@famulari.name>
and Ben Woodcroft <b.woodcroft@uq.edu.au>
at <http://bugs.gnu.org/22752>.
* guix/scripts/refresh.scm: Remove unneeded and harmful import of (guix
import gem).
Fixes <http://bugs.gnu.org/19816>.
* guix/scripts/environment.scm (evaluate-input-search-paths)
(build-inputs): Delete.
(evaluate-profile-search-paths, strip-input-name)
(package-or-package+output?, package-environment-inputs)
(build-environment, inputs->profile-derivations): New procedures.
(create-environment, show-search-paths, launch-environment)
(launch-environment/container): Replace 'inputs' argument
with 'profile' argument.
(package+propagated-inputs): Strip off names off of input tuples.
(options/resolve-packages): Handle input tuples that specify an output
in expressions.
(guix-environment): Convert inputs into a profile to use in the
environment. Remove non-package inputs such as origins from
environment inputs.
* doc/guix.texi ("invoking guix environment"): Document package+output
tuples for --expression option.
* tests/guix-environment.sh: Update tests.
* tests/guix-environment-container.sh: Likewise.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Before that 'open-connection' would return #f, and thus
'current-services' would return a single #f value when its continuation
expects two.
Reported by calher on #guix.
* gnu/services/herd.scm (open-connection): Rethrow system-error
exceptions.
(with-shepherd): Expect CONNECTION to always be true; remove useless
'dynamic-wind'.
* guix/scripts/system.scm (warn-on-system-error): New macro.
(upgrade-shepherd-services): Wrap body in 'warn-on-system-error'.
Partly fixes <http://bugs.gnu.org/22039>.
* gnu/services/herd.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/services/shepherd.scm (shepherd-service-canonical-name): New
procedure.
(shepherd-service-file): Export.
* guix/scripts/system.scm (upgrade-shepherd-services): New procedure.
(switch-to-system): Use it.
* guix/ui.scm (info): New procedure.
* doc/guix.texi (Invoking guix system): Mention system services.
* guix/scripts/build.scm (transform-package-source): Return a procedure
that expects a single object rather than a list of packages.
(options->transformation): Rewrite to precompute the list of applicable
transformations and to return a procedure that expects a single object
rather than a list of objects.
(options->derivations): Adjust accordingly.
* tests/scripts-build.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* guix/scripts/lint.scm (check-patch-file-names): Don't check if patches
start with the package full name since matching the package name (which
is a prefix of the full name) is sufficient.
* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.
* guix/scripts/package.scm (find-packages-by-description): Change 'rx'
parameter to 'regexps'.
[matches-all?, matches-one?]: New procedures.
Use them.
(process-query): Collect regexps from all 'search' queries, and pass
them to 'find-packages-by-description'.
* tests/guix-package.sh: Add tests.
* doc/guix.texi (Invoking guix package): Document it.
Before that it would include #f for most origins since that the default
value of 'origin-patch-guile'.
* guix/scripts/graph.scm (bag-node-edges): When 'origin-patch-guile'
returns #f, use (default-guile).
* tests/graph.scm ("bag DAG, including origins"): Check for an edge from
O to (default-guile).
Fixes <http://bugs.gnu.org/22280>.
Reported by Leo Famulari <leo@famulari.name>.
* guix/scripts/graph.scm (%bag-emerged-node-type)[edges]: Mimic
%BAG-NODE-TYPE. This is a followup to 38b92da.
* guix/scripts/build.scm (options/resolve-packages): Remove.
(options->things-to-build, transform-package-source): New procedure.
(%transformations): New variable.
(options->transformation): New procedure.
(options->derivations): Rewrite to use 'options->things-to-build' and
'options->transformation'.
* guix/scripts/package.scm (options->upgrade-predicate)
(store-item->manifest-entry): New procedures.
* guix/scripts/package.scm (options->installable): Use them. Remove the
'packages-to-upgrade' and 'packages-to-install' variables by getting rid
of a level of indirection.
* guix/scripts/package.scm (build-and-use-profile): New procedure.
Adapted and moved from...
(guix-package)[process-actions]: ... here. Adjust call sites.
This is a followup to b68d2db, which added a check for updaters at
macro-expansion time. The problem is that, when running 'guix pull',
Guile-JSON is found, so the PyPi updater (say) is added to %UPDATERS,
but then at run time Guile-JSON might be missing.
Reported by orbea on #guix.
* guix/scripts/refresh.scm (maybe-updater): Rewrite as 'syntax-rules'.
Produce code that checks conditions at run time.
(list-updaters): Update docstring.
This fixes a bug whereby some options, such as #:substitute-urls, would
be passed to the daemon too late to have an effect.
* guix/scripts/environment.scm (build-inputs): Remove call to
'set-build-options-from-command-line*'.
(guix-environment): Add call to 'set-build-options-from-command-line' as
early as possible.
* guix/scripts/lint.scm (patch-file-name): New procedure.
(check-vulnerabilities): Use it to filter out patched vulnerabilities.
* tests/lint.scm ("cve: one patched vulnerability"): New test.
Suggested by Hynek Urban <hynek.urban@gmail.com>.
* guix/scripts/substitute.scm (fetch-narinfos): Move body to...
[do-fetch]: ... here. New procedure.
Emit a warning when CACHE-INFO's prefix does not match.
As measured with:
time sh -c 'for i in `seq 1 10` ; do guix package --search-paths ; done'
On my machine, when running:
strace -o ,,s guix package --search-paths
the number returned by:
grep -E '^(open|l?stat).*\.go' ,,s | wc -l
drops from 1610 to 837.
* guix/scripts/package.scm: Remove two unnecessary #:use-module forms.
Autoload (gnu packages ...) modules.
Fixes <http://bugs.gnu.org/21991>.
Reported by Jan Synáček <jan.synacek@gmail.com>.
* guix/scripts/download.scm (guix-download): Call 'leave' when OPTS does
not contain an 'argument' key.
Fixes <http://bugs.gnu.org/21958>.
* guix/scripts/environment.scm (status->exit-code): New procedure.
(exit/status, primitive-exit/status): Use it.
* tests/guix-environment-container.sh: Add test.
* guix/scripts/lint.scm (probe-uri): Add #:timeout parameter. Pass it
to 'open-connection-for-uri' and 'ftp-open'.
(validate-uri): Pass #:timeout 3 to 'probe-uri'.
Fixes <http://bugs.gnu.org/21817>.
Reported by Petter Berntsen <petter@mykolab.ch>.
* guix/scripts/gc.scm (guix-gc)[assert-no-extra-arguments]: New
procedure.
Use it for actions 'collect-garbage', 'optimize', and 'verify'.
* tests/guix-gc.sh: Add tests.
Partly fixes <http://bugs.gnu.org/20255>.
* guix/scripts/package.scm (search-path-environment-variables): Change
'profile' to 'profiles'; expect it to be a list.
(display-search-paths): Likewise.
(%default-options): Remove 'profile' entry.
(%options) <--profile>: Keep previous values associated with 'profile'
in RESULT.
(guix-package)[process-actions, process-query]: Handle the possible
lack of 'profile' pair in OPTS.
Reported by Sleep_Walker and Mathieu Lirzin <mthl@gnu.org>.
* guix/scripts/refresh.scm (maybe-updater, list-updaters): New macros.
(%updaters): Use 'list-updaters' instead of 'list'. Make
%PYPI-UPDATER conditional.
Reported by Paul van der Walt <paul@denknerd.org>
in <http://bugs.gnu.org/21829>.
* guix/scripts/import/hackage.scm (guix-import-hackage): Add missing
argument in call to 'leave'.
* guix/scripts/container/exec.scm (partition-args): Reimplement such
that all args up to and including the PID are returned as the first of
the two values.
Fixes <http://bugs.gnu.org/21068>.
Reported by Germano Gabbianelli <tyrion.mx@gmail.com>
and Mark H Weaver <mhw@netris.org>.
* guix/scripts/system.scm (perform-action): Always add GRUB.CFG to DRVS
for 'init' and 'reconfigure'.
Co-authored-by: Mark H Weaver <mhw@netris.org>
* gnu/services.scm (system-derivation): New procedure.
(system-service-type): New variable.
(boot-script-entry): New procedure.
(boot-service-type): Extend SYSTEM-SERVICE-TYPE.
(etc-entry): New procedure.
(etc-service-type): Extend SYSTEM-SERVICE-TYPE.
(fold-services): Change default #:target-type to SYSTEM-SERVICE-TYPE.
* gnu/system.scm (operating-system-directory-base-entries): New procedure.
(essential-services): Use it. Add an instance of
SYSTEM-SERVICE-TYPE.
(operating-system-boot-script): Pass #:target-type to 'fold-services'.
(operating-system-derivation): Rewrite in terms of 'fold-services'.
* gnu/system/linux-container.scm (system-container): Remove.
(container-script): Use 'operating-system-derivation'.
* guix/scripts/system.scm (export-extension-graph): Replace
BOOT-SERVICE-TYPE by SYSTEM-SERVICE-TYPE.
* doc/images/service-graph.dot: Add 'system' node and edges.
* doc/guix.texi (Service Composition): Mention SYSTEM-SERVICE-TYPE.
(Service Reference): Document it. Update 'fold-services'
documentation.
* guix/scripts/environment.scm (%default-options): Remove 'exec'
association.
(guix-environment): If the user didn't specify a command, use the
default shell, or use /bin/sh when a container is requested.
This patch changes the --ad-hoc flag to be positional. That is, the
packages that appear before --ad-hoc are interpreted as packages whose
inputs should be in the environment; the packages that appear after are
interpreted as packages to be directly added to the environment.
* guix/scripts/environment.scm (tag-package-arg, compact): New
procedures.
(%options): Tweak the handlers for --load and --expression options.
(options/resolve-packages): Preserve package mode tag.
(parse-args): Tweak argument handler to use package tagging procedure.
(guix-environment): Apply ad-hoc behavior on a per package basis.
* tests/guix-environment.sh: Add test.
* doc/guix.texi ("invoking guix environment"): Document new behavior of
--ad-hoc.
Fixes <http://bugs.gnu.org/21773>.
Reported by Jan Synáček <jan.synacek@gmail.com>.
* guix/ui.scm (make-regexp*): New procedure.
* guix/scripts/package.scm (options->installable, guix-package): Use it
when processing user-provided regexps.
Ludovic Courtès