e7ca634912
Merge branch 'master' into core-updates
2018-02-03 22:46:07 -05:00
c684008992
gnu: slepc: Apply invoke to configure flags.
...
Follow-up to 94a1eb96d3
2018-02-02 08:26:59 -06:00
e01397b489
gnu: Add Elemental.
...
* gnu/packages/maths.scm (elemental): New variable.
2018-02-02 08:26:59 -06:00
bee7bb315c
Merge branch 'master' into core-updates
2018-02-01 13:18:47 +01:00
cc809f1636
gnu: slepc: Update to 3.8.2.
...
* gnu/packages/maths.scm (slepc): Update to 3.8.2.
2018-01-29 00:23:27 +01:00
3c524f2153
gnu: slepc: Update licence.
...
SLEPc has been released under a 2-clause BSD licence since version 3.8.
* gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2.
2018-01-29 00:23:27 +01:00
94a1eb96d3
gnu: fbcat, slepc: Use INVOKE.
...
* gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for
SYSTEM*.
* gnu/packages/maths.scm (slepc)[arguments]: Likewise.
2018-01-29 00:23:27 +01:00
59cd0ba4ab
gnu: openspecfun: Update to 0.5.3.
...
* gnu/packages/maths.scm (openspecfun): Update to 0.5.3.
2018-01-29 00:23:27 +01:00
a4f393b71f
gnu: opencascade-oce: Fix build with glibc 2.26.
...
* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
2018-01-16 15:24:49 -08:00
23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates
2017-12-31 14:10:25 +02:00
dc7d6d4ece
gnu: Fix copyright symbol.
...
* gnu/packages/maths.scm: Fix copyright line for Dave Love.
2017-12-24 20:51:48 +01:00
e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages.
...
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
2017-12-24 16:12:13 +01:00
493937ae1f
gnu: openblas: Build with LAPACK.
...
* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK;
add set-extralib phase.
[inputs]: Add fortran-lib.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-12-23 20:37:40 +01:00
f76fc96866
Merge branch 'master' into core-updates
2017-12-21 13:58:35 -05:00
677bc34d5b
gnu: Remove redundant cmake libdir configure flags.
...
* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove
CMAKE_INSTALL_LIBDIR flag.
* gnu/packages/calendar.scm (libical): Same.
* gnu/packages/engineering.scm (kicad): Same.
* gnu/packages/games.scm (openrct2, mgba): Same.
* gnu/packages/gl.scm (virtualgl): Same.
* gnu/packages/image-processing.scm (mia): Same.
* gnu/packages/linux.scm (rdma-core): Same.
* gnu/packages/machine-learning.scm (dlib): Same.
* gnu/packages/maths.scm (lapack, superlu, z3): Same.
* gnu/packages/password-utils.scm (keepassxc): Same.
* gnu/packages/photo.scm (darktable): Same.
* gnu/packages/rdesktop.scm (freerdp): Same.
2017-12-19 19:52:01 +02:00
a8db968fa4
gnu: wxmaxima: Update to 17.10.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
2017-12-19 11:26:16 -05:00
32cd878be0
Merge branch 'master' into core-updates
2017-12-19 01:42:40 +01:00
6ad0c92df5
gnu: ceres-solver: Update to 1.13.0.
...
* gnu/packages/maths.scm (ceres-solver): Update to 1.13.0.
2017-12-15 07:32:43 -06:00
dec2ade108
gnu: glpk: Update to 4.64.
...
* gnu/packages/maths.scm (glpk): Update to 4.64.
2017-12-09 23:18:33 +02:00
77181815ae
Merge branch 'master' into core-updates
2017-12-05 23:41:30 +01:00
440c4273b8
gnu: coda: Update to 2.18.3.
...
* gnu/packages/maths.scm (coda): Update to 2.18.3.
2017-12-04 04:40:14 +01:00
05fd8e6b46
gnu: r-pracma: Update to 2.1.1.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30 17:28:24 +01:00
2dd12924cf
Merge branch 'master' into core-updates
2017-11-19 15:01:00 +01:00
589e3f4e70
gnu: Move more packages from python to python-web.
...
* gnu/packages/python.scm (python-requests, python2-requests)
(python-requests-2.7, python-oauthlib, python2-oauthlib)
(python-furl, python2-furl, python-wsgi-intercept)
(python-publicsuffix, python2-publicsuffix)
(python-publicsuffix2, python2-publicsuffix2): Move to...
* gnu/packages/python-web.scm: ... here.
* gnu/packages/bioinformatics.scm, gnu/packages/finance.scm:
gnu/packages/maths.scm, gnu/packages/terminals.scm,
gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust
accordingly.
2017-11-16 08:45:15 +01:00
5a80c15c14
gnu: Remove "open source" from descriptions.
...
All software in Guix is Free Software.
* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
b4c22f2546
Merge branch 'master' into core-updates
2017-11-02 22:24:24 +01:00
a254971350
gnu: units: Add readline input.
...
* gnu/packages/maths.scm (units)[inputs]: Add readline.
2017-11-01 17:17:01 -05:00
0498d24866
gnu: units: Add python input.
...
* gnu/packages/maths.scm (units)[inputs]: New field.
[arguments]: New field. Add 'wrap-units_cur phase.
2017-11-01 17:15:10 -05:00
f11d2849a1
gnu: units: Update to 2.16.
...
* gnu/packages/maths.scm (units): Update to 2.16.
2017-11-01 17:11:15 -05:00
b7883b111d
Merge branch 'master' into core-updates
2017-10-25 20:02:08 +02:00
24404eaf93
gnu: dealii: Update to 8.5.1.
...
Fixes compilation with boost@1.64.0.
* gnu/packages/maths.scm (dealii): Update to 8.5.1.
2017-10-24 20:16:50 -05:00
4150da630f
gnu: p4est: Update to 2.0.
...
* gnu/packages/maths.scm (p4est): Update to 2.0.
2017-10-24 20:16:50 -05:00
9ce587f231
gnu: libhilbert: Remove package.
...
This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.
* gnu/packages/maths.scm (libhilbert): Remove variable.
2017-10-24 20:16:49 -05:00
958b5a1caa
gnu: slepc: Update to 3.8.0.
...
* gnu/packages/maths.scm (slepc): Update to 3.8.0.
2017-10-24 20:16:49 -05:00
6fec298d3e
gnu: petsc: Update to 3.8.0.
...
* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
2017-10-24 20:16:42 -05:00
8cff2e7aed
Merge 'master' into core-updates
2017-10-16 19:52:30 +02:00
b3b2efc82d
gnu: maxima: Update to 5.41.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.41.0.
2017-10-15 10:50:45 -04:00
b509efb385
gnu: Add lapack-3.5.
...
* gnu/packages/maths.scm (lapack-3.5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-11 11:12:33 +02:00
c01ef97594
Merge branch 'master' into core-updates
2017-10-10 22:33:28 +02:00
1c055d7258
Merge branch 'staging'
2017-10-10 21:44:32 +02:00
2fd26d055a
gnu: Add hdf-java.
...
* gnu/packages/maths.scm (hdf-java): New variable.
2017-10-10 10:22:08 +02:00
6a317919cf
Merge branch 'master' into staging
2017-10-06 11:03:27 +02:00
5ca4fe9696
gnu: octave: Reference makeinfo with absolute path.
...
* gnu/packages/maths.scm (octave)[arguments]: Add configure-makeinfo phase.
[inputs]: Add texinfo.
[native-inputs]: Remove texinfo.
2017-10-06 03:34:59 +05:30
7716ccd59c
Merge branch 'master' into staging
2017-10-05 00:45:38 +02:00
d109b1e85c
Update e-mail for Theodoros Foradis.
...
* .mailmap: Add entry.
* gnu/packages/aspell.scm: Replace theodoros.for@openmailbox.org with current address.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/electronics.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/fpga.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/uml.scm: Likewise.
* gnu/packages/wxwidgets.scm: Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:54 +02:00
64df08f0cf
Merge remote-tracking branch 'origin/master' into core-updates
2017-10-01 22:16:22 +03:00
dc1d3cdef7
gnu: Use 'modify-phases' syntax.
...
* gnu/packages/admin.scm (mingetty, clusterssh, wpa-supplicant-minimal,
wpa-supplicant, wakelan, acpica, tree, direvent, dstat)[arguments]: Use
'modify-phases' syntax.
* gnu/packages/algebra.scm (arb)[arguments]: Likewise.
* gnu/packages/apr.scm (apr-util)[arguments]: Likewise.
* gnu/packages/audio.scm (clalsadrv, fluidsynth, faad2, lv2-mda-piano,
lv2-mda-epiano, timidity++, vamp, soundtouch, portaudio, rsound,
zita-convolver, zita-alsa-pcmi)[arguments]: Likewise.
* gnu/packages/backup.scm (rdup, btar)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (bedops, bwa, crossmap, express,
flexbar, grit, hisat, ngs-sdk, subread)[arguments]: Likewise.
* gnu/packages/bittorrent.scm (transmission)[arguments]: Likewise.
* gnu/packages/cdrom.scm (cd-discid)[arguments]: Likewise.
* gnu/packages/compression.scm (sharutils)[arguments]: Likewise.
* gnu/packages/conky.scm (conky)[arguments]: Likewise.
* gnu/packages/databases.scm (bdb, bdb-5.3)[arguments]: Likewise.
* gnu/packages/debug.scm (delta, c-reduce)[arguments]: Likewise.
* gnu/packages/display-managers.scm (slim)[arguments]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[arguments]: Likewise.
* gnu/packages/emacs.scm (geiser, emacs-wget, bbdb)[arguments]: Likewise.
* gnu/packages/engineering.scm (pcb)[arguments]: Likewise.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Likewise.
* gnu/packages/flashing-tools.scm (flashrom)[arguments]: Likewise.
* gnu/packages/fltk.scm (fltk)[arguments]: Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg)[arguments]: Likewise.
* gnu/packages/gd.scm (perl-gd)[arguments]: Likewise.
* gnu/packages/gkrellm.scm (gkrellm)[arguments]: Likewise.
* gnu/packages/glib.scm (glibmm)[arguments]: Likewise.
* gnu/packages/gl.scm (glew)[arguments]: Likewise.
* gnu/packages/gnome.scm (icon-naming-utils, orbit2, libbonobo, gnome-vfs,
libgnome, libbonoboui, goffice-0.8, dconf)[arguments]: Likewise.
* gnu/packages/gprolog.scm (gprolog)[arguments]: Likewise.
* gnu/packages/gps.scm (gpscorrelate)[arguments]: Likewise.
* gnu/packages/graphics.scm (agg)[arguments]: Likewise.
* gnu/packages/gtk.scm (ganv, girara, gtksourceview-2, guile-present,
python2-pycairo)[arguments]: Likewise.
* gnu/packages/guile.scm (guile-1.8)[arguments]: Likewise.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Likewise.
* gnu/packages/hugs.scm (hugs)[arguments]: Likewise.
* gnu/packages/hurd.scm (gnumach-headers, hurd-headers, hurd-minimal)
[arguments]: Likewise.
* gnu/packages/image-viewers.scm (feh, sxiv)[arguments]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[arguments]: Likewise.
* gnu/packages/linux.scm (bridge-utils, iw, fuse, unionfs-fuse/static,
lm-sensors, i2c-tools, xsensors, perf, mdadm, libaio, module-init-tools)
[arguments]: Likewise.
* gnu/packages/lisp.scm (ccl)[arguments]: Likewise.
* gnu/packages/lout.scm (lout)[arguments]: Likewise.
* gnu/packages/lua.scm (luajit)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (shogun)[arguments]: Likewise.
* gnu/packages/mail.scm (exim)[arguments]: Likewise.
* gnu/packages/man.scm (man-pages, txt2man)[arguments]: Likewise.
* gnu/packages/maths.scm (lapack, superlu-dist, openlibm, openspecfun)
[arguments]: Likewise.
* gnu/packages/messaging.scm (bitlbee)[arguments]: Likewise.
* gnu/packages/mp3.scm (libmad, id3lib, mp3info)[arguments]: Likewise.
* gnu/packages/music.scm (solfege)[arguments]: Likewise.
* gnu/packages/noweb.scm (noweb)[arguments]: Likewise.
* gnu/packages/patchutils.scm (patchutils, quilt, colordiff)[arguments]:
Likewise.
* gnu/packages/pdf.scm (xpdf, zathura-cb, zathura-ps, zathura-djvu,
zathura-pdf-poppler, zathura, podofo, fbida)[arguments]: Likewise.
* gnu/packages/perl.scm (perl-file-list, perl-test-harness)[arguments]:
Likewise.
* gnu/packages/photo.scm (gphoto2)[arguments]: Likewise.
* gnu/packages/popt.scm (popt)[arguments]: Likewise.
* gnu/packages/pretty-print.scm (source-highlight, astyle)[arguments]:
Likewise.
* gnu/packages/pumpio.scm (pumpa)[arguments]: Likewise.
* gnu/packages/python.scm (python-passlib, python-pycrypto, python2-empy,
python-sqlalchemy, python-docopt)[arguments]: Likewise.
* gnu/packages/rdf.scm (lrdf)[arguments]: Likewise.
* gnu/packages/regex.scm (tre)[arguments]: Likewise.
* gnu/packages/rrdtool.scm (rrdtool)[arguments]: Likewise.
* gnu/packages/ruby.scm (ruby-2.1, ruby-1.8)[arguments]: Likewise.
* gnu/packages/sawfish.scm (sawfish)[arguments]: Likewise.
* gnu/packages/scheme.scm (racket)[arguments]: Likewise.
* gnu/packages/sdl.scm (guile-sdl)[arguments]: Likewise.
* gnu/packages/serveez.scm (serveez)[arguments]: Likewise.
* gnu/packages/skribilo.scm (skribilo)[arguments]: Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[arguments]: Likewise.
* gnu/packages/suckless.scm (dmenu, slock)[arguments]: Likewise.
* gnu/packages/tcl.scm (expect)[arguments]: Likewise.
* gnu/packages/telephony.scm (commoncpp)[arguments]: Likewise.
* gnu/packages/textutils.scm (recode, libgtextutils)[arguments]:
Likewise.
* gnu/packages/time.scm (time)[arguments]: Likewise.
* gnu/packages/tor.scm (privoxy)[arguments]: Likewise.
* gnu/packages/uucp.scm (uucp)[arguments]: Likewise.
* gnu/packages/video.scm (libdvdnav-4)[arguments]: Likewise.
* gnu/packages/web-browsers.scm (lynx)[arguments]: Likewise.
* gnu/packages/web.scm (tinyproxy)[arguments]: Likewise.
* gnu/packages/wicd.scm (wicd)[arguments]: Likewise.
* gnu/packages/wm.scm (bspwm)[arguments]: Likewise.
* gnu/packages/xdisorg.scm (sxhkd, xcape)[arguments]: Likewise.
* gnu/packages/xfce.scm (xfconf)[arguments]: Likewise.
* gnu/packages/xfig.scm (transfig)[arguments]: Likewise.
* gnu/packages/xorg.scm (imake)[arguments]: Likewise.
2017-09-20 20:58:04 -04:00
5a7deb1174
gnu: Add BLIS.
...
* gnu/packages/maths.scm (make-blis): New procedure.
(blis, ignorance): New variables.
(blis/x86_64): New macro.
(blis-sandybridge, blis-haswell, blis-knl): New variables.
2017-09-07 15:38:56 +02:00
c4d4a77923
gnu: pt-scotch32: use keyword arguments from "scotch32"
...
*gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword
arguments from "scotch32" package, ensuring that the INTSIZE32 macro is
set
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-04 15:24:04 +02:00
43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references.
...
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
'Configured On' date; truncate reference to compiler store item.
2017-09-01 08:34:32 +02:00
e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers.
...
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
truncate hashes of compiler store items.
2017-09-01 08:34:32 +02:00
fd0378a147
gnu: hdf5: Avoid unneeded store references to compilers.
...
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
"libhdf5.settings", removing references to the C/C++/Fortran compilers.
2017-09-01 08:34:31 +02:00
e3a1a1deda
gnu: hdf5: Add output for fortran interface.
...
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
[outputs]: Add "fortran".
[arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
output to the runpath of the Fortran libs; add a 'split phase to move
all Fortran-related files to the the Fortran output store location.
2017-09-01 08:34:24 +02:00
5789566aa2
gnu: openblas: Enable tests.
...
* gnu/packages/maths.scm (openblas)[arguments]: Enable tests.
2017-08-31 18:49:49 +02:00
1b8de87c98
gnu: openblas: Update to 0.2.20.
...
* gnu/packages/maths.scm (openblas): Update to 0.2.20.
2017-08-31 18:49:27 +02:00
1c25a52c4a
gnu: Add pt-scotch32.
...
* gnu/packages/maths.scm (pt-scotch32): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
1c39f3b877
gnu: Add "scotch32".
...
* gnu/packages/maths.scm (scotch32): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 12:34:50 +02:00
e0fbf37350
gnu: coda: Update to 2.18.2.
...
* gnu/packages/maths.scm (coda): Update to 2.18.2.
2017-08-30 09:20:52 +02:00
3c8ba11a97
Update e-mail for Kei Kebreau.
...
* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
2017-08-29 20:13:24 -04:00
72e2815d18
Merge branch 'core-updates'
2017-08-26 15:15:49 +02:00
cf684d87d7
gnu: z3: Build Python bindings.
...
* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase. Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags. Remove #:test-target.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:53 +02:00
2718a9cd09
Merge branch 'master' into core-updates
2017-08-21 02:40:37 +02:00
953a12fa9b
gnu: hdf4: Fix building on aarch64.
...
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
2017-08-16 09:33:11 +03:00
09ec5a0f0c
Merge branch 'master' into core-updates
2017-08-15 03:10:14 -04:00
ac2ddcc66f
gnu: wxmaxima: Update to 17.05.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1.
[arguments]: Put "autoconf" phase after the "unpack" phase. Fix
indentation.
2017-08-13 18:18:27 -04:00
cc294bcee6
Merge branch 'master' into core-updates
2017-08-09 17:25:31 -04:00
d84b09e937
gnu: dealii: Update to 8.5.0.
...
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
...
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
2509522c4f
gnu: suitesparse: Use modify-phases.
...
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
...
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
baeaf8821d
gnu: slepc: Update to 3.7.4.
...
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link. Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
41a46a5035
gnu: petsc: Update to 3.7.6.
...
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
2d9495da23
Merge branch 'master' into core-updates
2017-08-07 16:45:16 -04:00
83fef82b7c
gnu: cubicle: Fix evaluation.
...
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
f167595ba1
Merge branch 'master' into core-updates
2017-08-06 00:23:20 -04:00
3d5d87a3ae
gnu: Add cubicle.
...
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
...
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
0abf526420
gnu: hdf4: Update to 4.12.13.
...
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
aa9780daf9
Merge branch 'master' into core-updates
2017-08-01 23:42:28 +02:00
313844d9dc
gnu: Add z3.
...
* gnu/packages/maths.scm (z3): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
e0b9e377f1
Merge branch 'master' into core-updates
2017-07-28 00:34:13 +02:00
1cae188e61
gnu: glpk: Update to 4.63.
...
* gnu/packages/maths.scm (glpk): Update to 4.63.
2017-07-26 10:15:54 +03:00
0093b1262b
gnu: maxima: Ensure binutils are available at runtime.
...
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
2017-07-25 07:58:55 -04:00
6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime."
...
This reverts commit f2fa86cc825ea8dbf0c9
2017-07-25 07:58:46 -04:00
6c1a317e29
Merge branch 'master' into core-updates
2017-07-23 03:42:12 -04:00
7c0d4c3a6b
gnu: lapack: Fix hash of release 3.7.1
...
Apparently the release was modified (cleaned-up) in-place. An issue was opened
at https://github.com/Reference-LAPACK/lapack-release/issues/4 .
* gnu/packages/maths.scm (lapack): Fix sha256 hash.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:51 +02:00
c8eb2b8c60
Merge branch 'master' into core-updates
2017-07-10 14:37:53 -04:00
5143517c99
gnu: wxmaxima: Update to 17.05.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0.
[source]: Update URL and add file-name.
[native-inputs]: Add autoconf, automake and gettext-minimal.
[arguments]: Add 'autoconf' phase.
2017-07-08 17:05:55 -04:00
f2fa86cc82
gnu: maxima: Ensure gcc is available at runtime.
...
* gnu/packages/maths.scm (maxima)[inputs]: Add gcc.
[arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
2017-07-07 20:47:28 -04:00
3a4d5df2b0
gnu: itpp: Use texlive-tiny and ghostscript.
...
* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with
texlive-tiny; add ghostscript.
2017-06-30 13:57:42 +02:00
612a387fe7
gnu: gnuplot: Use texlive-tiny.
...
* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
2017-06-30 13:57:41 +02:00
1024c8119c
Merge branch 'master' into core-updates
2017-06-29 18:02:17 -04:00
3ab869b63f
gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64.
...
This fixes a regression introduced in
ef39a17717
2017-06-29 15:21:17 +02:00
26599d692c
gnu: scotch: Build in 64-bit mode on 64-bit machines.
...
* gnu/packages/maths.scm (scotch)[arguments] <configure>: Add
"INTSIZE64" CPP flag.
2017-06-26 18:16:11 +02:00
11f0c4e871
gnu: lapack: Build with LAPACKE_WITH_TMG=ON.
...
* gnu/packages/maths.scm (lapack)[arguments]: Pass
"-DLAPACKE_WITH_TMG=ON".
2017-06-26 18:16:11 +02:00
ef39a17717
gnu: lapack: Update to 3.7.1.
...
* gnu/packages/maths.scm (lapack): Update to 3.7.1.
2017-06-26 18:16:11 +02:00
ed068b960e
Merge branch 'master' into core-updates
2017-06-26 00:00:58 -04:00
2da6306427
gnu: hdf5: Update to 1.8.19.
...
* gnu/packages/maths.scm (hdf5): Update to 1.8.19.
[source]: Update uri.
2017-06-25 23:11:16 +02:00
f885fc0512
gnu: gsl: Update to 2.4.
...
* gnu/packages/maths.scm (gsl): Update to 2.4.
[arguments]: Remove #:parallel-tests?.
2017-06-21 23:15:56 +05:30
148585c240
gnu: Move contents of zip module into compression module.
...
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to...
* gnu/packages/compression.scm: ...here.
* gnu/packages/zip.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file.
* po/packages/POTFILES.in: Unregister deleted file.
* gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression,
docbook, documentation, fonts, fpga, game-development, games, gl, gnome,
gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice,
markup, maths, mc, monitoring, music, php, pretty-print, python, scheme,
smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml,
zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm:
Adapt module import.
2017-06-20 18:10:35 +05:30
9815739e9b
Merge branch 'master' into core-updates
2017-06-20 00:25:59 -04:00
299b05254f
gnu: glpk: Update to 4.62.
...
* gnu/packages/maths.scm (glpk): Update to 4.62.
2017-06-19 22:07:15 +03:00
c67d587f94
Merge branch 'master' into core-updates
...
This merge commit includes a fix for CVE-2017-6512 in Perl 5.26.0.
2017-06-07 12:11:55 -04:00
89b8df9765
gnu: maxima: Update to 5.40.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.40.0.
2017-06-06 16:58:23 -04:00
d1a914082b
Merge branch 'master' into core-updates
2017-05-24 12:05:47 +02:00
5e54f4adda
gnu: flex-2.6.1: Remove variable.
...
* gnu/packages/flex.scm (flex-2.6.1): Remove variable.
* gnu/packages/bootloaders.scm (grub, dtc): Use flex instead of flex-2.6.1.
* gnu/packages/embedded.scm (propeller-binutils, binutils-vc4): Likewise.
* gnu/packages/maths.scm (scotch): Likewise.
* gnu/packages/wine.scm (wine): Likewise.
2017-05-15 17:07:12 -04:00
7adaab9fe7
gnu: Add ocaml4.01-gsl.
...
* gnu/packages/maths.scm (ocaml4.01-gsl): New variable.
2017-05-10 22:13:54 +02:00
300200b637
gnu: Add netcdf-fortran.
...
* gnu/packages/maths.scm (netcdf-fortran): New variable.
2017-04-30 11:50:50 +02:00
7d873e0c26
gnu: gnuplot: Update to 5.0.6.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.6.
2017-04-22 13:33:09 -04:00
d1e4ad1b02
gnu: Fix typos in descriptions.
...
* gnu/packages/admin.scm (di)[description]: Likewise.
* gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise.
* gnu/packages/datastructures.scm (sparsehash)[description]: Likewise.
* gnu/packages/dns.scm (knot)[description]: Likewise.
* gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]:
Likewise.
* gnu/packages/gnome.scm (libpeas)[description]: Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo.
* gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[description]: Likewise.
* gnu/packages/mail.scm (mlmmj)[description]: Likewise.
* gnu/packages/maths.scm (vc)[description]: Likewise.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise.
* gnu/packages/networking.scm (nload)[description]: Likewise.
* gnu/packages/python.scm (python-execnet)[description]: Likewise.
* gnu/packages/terminals.scm (tilda)[description]: Likewise.
* gnu/packages/python.scm (python-execnet, python-tables)
(python2-coverage-test-runner, python2-rope)[description]: Likewise.
2017-04-17 02:04:08 +02:00
181170c6ee
gnu: octave: Build with gl2ps support.
...
* gnu/packages/maths.scm (octave)[inputs]: Add gl2ps.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 15:24:37 +02:00
6b6aca9b36
gnu: flann: Move .mex file to a separate "octave" output.
...
That way the closure of flann:out is down from 1 GiB
to 290 MiB.
* gnu/packages/maths.scm (flann)[outputs]: New field.
[arguments]: Add 'set-octave-directory' phase.
2017-04-07 00:17:16 +02:00
fe418cc5b2
gnu: armadillo: Change license to ASL 2.0.
...
Armadillo versions 7.800 and onwards are licensed under the Apache License
2.0.
* gnu/packages/maths.scm (armadillo)[license]: Change to ASL 2.0.
2017-04-06 15:42:18 +02:00
498d2553ed
gnu: Remove armadillo-for-rcpparmadillo.
...
This package is no longer useful, because upstream does not keep the tarballs
of older releases. We use the bundled armadillo sources in the
r-rccparmadillo package instead.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
2017-04-06 14:39:22 +02:00
133cba8cb5
gnu: armadillo: Update to 7.800.2.
...
* gnu/packages/maths.scm (armadillo): Update to 7.800.2.
2017-04-06 14:39:22 +02:00
2fe41e0fad
gnu: r-pracma: Update to 2.0.4.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
2017-04-06 14:39:18 +02:00
84157bb8bf
Merge branch 'master' into core-updates
...
Most conflicts are from 6fd52309b8
2017-03-30 22:59:53 +02:00
6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.
...
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-30 01:30:16 +02:00
6f76606984
gnu: gsl: Disable tests on aarch64-linux.
...
* gnu/packages/maths.scm (gsl)[arguments]: Do not run the test suite on
aarch64-linux.
[home-page]: Use https.
2017-03-28 09:34:33 +03:00
c17383f400
Merge branch 'master' into core-updates
2017-03-27 21:19:38 -04:00
6e64766a86
gnu: gnuplot: Enable tikz backend.
...
* gnu/packages/maths.scm (gnuplot)[inputs]: Add lua.
2017-03-27 15:58:50 +02:00
d5ceeb5a2d
gnu: scotch: Build with flex-2.6.1.
...
* gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not
flex.
2017-03-23 07:32:31 +02:00
83a3464793
gnu: openblas: Add support for aarch64.
...
* gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as
substitutable, build for target ARMv8.
2017-03-21 22:03:05 +02:00
6d5f63b690
gnu: Add maxflow.
...
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
a53d6719bc
gnu: Add itpp.
...
* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
ba1be533ad
gnu: Add ocaml-gsl.
...
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
cf8d068775
gnu: units: Update to 2.14.
...
* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
9f91340166
gnu: octave: Build with curl and graphicsmagick.
...
* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:09 -05:00
479c4273e6
gnu: Add jacal.
...
* gnu/packages/maths.scm (jacal): New variable.
* gnu/packages/patches/jacal-fix-texinfo.patch: New file.
2017-03-02 18:17:26 +01:00
e9d60ebadb
gnu: octave: Update to 4.2.1.
...
* gnu/packages/maths.scm (octave): Update to 4.2.1.
2017-03-01 11:33:08 +02:00
a995251d68
gnu: wxmaxima: Downgrade to 16.04.2.
...
* gnu/packages/maths.scm (wxmaxima): Do it.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-28 11:22:13 -05:00
cbfbcb2105
gnu: coda: Update to 2.18.
...
* gnu/packages/python.scm (coda): Update to 2.18.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-02-27 14:55:25 +01:00
1f45f18abe
installer: Aris: update synopis and description.
...
* gnu/packages/maths.scm (aris): Use the synopsis and description from the
web page instead of the README file.
2017-02-17 18:52:24 +01:00
193abc8232
gnu: Add aris.
...
* gnu/packages/maths.scm(aris): New variable.
2017-02-17 18:33:24 +01:00
29da15738c
gnu: wxmaxima: Update to 16.12.2.
...
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.2.
2017-02-10 11:02:10 -05:00
4554813936
gnu: gmsh: Propagate opencascade-oce.
...
* gnu/packages/maths.scm (gmsh)[propagated-inputs]: Add opencascade-oce.
[arguments]: Remove #:phases parameter for component8_in_a_box test
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-02-09 19:19:06 +01:00
182dde82ed
gnu: cddlib: Fix source URI.
...
* gnu/packages/maths.scm (cddlib)[source]: Update source URI.
2017-02-04 15:26:26 +10:00
c000b6b10f
gnu: reducelcs: Fix license.
...
* gnu/packages/maths.scm (reducelcs)[license]: Change to GPL3+.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-01 19:51:36 -05:00
8a4d14fa71
gnu: gmsh: Update to 2.16.0
...
* gnu/packages/maths.scm (gmsh): Update to 2.16.0
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-31 17:55:50 +01:00
54052a54c1
gnu: Add reducelcs.
...
* gnu/packages/maths.scm (reducelcs): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-01-30 07:46:28 -05:00
5d4bd4cce1
gnu: Add opencascade-oce.
...
* gnu/packages/maths.scm (opencascade-oce): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-01-30 10:52:45 +01:00
82110ef658
gnu: glpk: Update to 4.61.
...
* gnu/packages/maths.scm (glpk): Update to 4.61.
[home-page]: Use HTTPS.
2017-01-23 18:54:27 +01:00
7bbf2e39f7
gnu: hdf4: Update to 4.2.12.
...
* gnu/packages/maths.scm (hdf4): Update to 4.2.12.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-09 15:55:57 +01:00
a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
2016-12-29 21:49:12 +01:00
b1c1f4d012
gnu: armadillo: Update to 7.600.2.
...
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
2016-12-29 21:49:12 +01:00
db82557013
gnu: netcdf: Enable HDF4 support.
...
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
[arguments]: Add "--enable-hdf4" configure flag.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-24 14:41:50 +01:00
5f80054053
gnu: gnuplot: Update to 5.0.5.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
2016-12-18 23:27:43 -05:00
5a2604bfb6
gnu: wxmaxima: Update to 16.12.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
2016-12-18 14:05:40 -05:00
4a652c78d4
gnu: maxima: Update to 5.39.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
2016-12-18 12:57:09 -05:00
bea3cf4b90
gnu: gsl: Update to 2.3.
...
* gnu/packages/maths.scm (gsl): Update to 2.3.
2016-12-12 22:08:45 +01:00
f81c6a4932
gnu: gmsh: Update to 2.15.0.
...
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 19:14:21 +01:00
a4b0bfb195
gnu: netcdf: Upgrade to 4.4.1.1.
...
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this. Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
2016-12-01 23:50:09 -06:00
dcd9d1637a
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}].
...
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
2016-11-30 11:16:18 -05:00
62126576fc
gnu: hdf5: Build the C++ interface.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
2016-11-24 21:43:47 +01:00
daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>.
...
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-21 14:39:54 -05:00
f5a077b10f
gnu: octave: Update to 4.2.0.
...
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
2cab1dd58b
Merge branch 'core-updates'
2016-11-13 00:34:16 +01:00
1c79e0861a
gnu: gmsh: Update to 2.14.1
...
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
8b6ad165d1
Merge branch 'master' into core-updates
2016-11-06 03:29:06 -05:00
ccbc575824
gnu: maxima: Update to 5.38.1.
...
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
062c7e43ed
Merge branch 'master' into core-updates
2016-10-29 21:44:44 -04:00
fba78d18c2
gnu: mumps: Upgrade to 5.0.2.
...
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
2016-10-28 15:53:32 -05:00
02c73adcdf
Merge branch 'master' into core-updates
2016-10-26 19:00:06 -04:00
062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26 16:23:25 +02:00
7397cd9e3f
gnu: armadillo: Update to 7.500.0.
...
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26 16:23:25 +02:00
4b12fe5cab
gnu: coda: Remove bundled libraries.
...
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
d91025e3d0
gnu: Add coda.
...
* gnu/packages/maths.scm (coda): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
d3c4f3bb00
gnu: Add hdf-eos2.
...
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
d2478b4cdd
Merge branch 'master' into core-updates
2016-10-19 10:54:36 -04:00
15ca49b220
gnu: hdf4: Really fix non-x86 architectures.
...
This is a follow-up to commit 60da9fb110
2016-10-18 21:15:43 +02:00
061d7f3bd2
Merge branch 'master' into core-updates
2016-10-13 05:53:07 -04:00
becbbefc9b
gnu: Add hdf4
...
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-12 23:35:43 +02:00
abcf4858cd
Merge branch 'master' into core-updates
2016-10-12 09:28:14 -04:00
0f43f8354c
gnu: Add hdf-eos5.
...
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-06 18:14:45 +02:00
b19c7989b7
Merge branch 'master' into core-updates
2016-10-05 19:15:25 -04:00
517318adf0
gnu: Add Vc.
...
* gnu/packages/maths.scm (vc): New variable.
2016-10-05 12:49:41 -04:00
ab2cc5cde1
gnu: gsl: Disable failing tests on i686.
...
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
2016-10-05 15:11:08 +02:00
8c82e1c9d3
gnu: gsl: Update to 2.2.1.
...
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
2016-10-04 16:37:59 +02:00
0f7cd95b81
gnu: gctp: 'license' field now has a <license> value.
...
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
2016-10-03 23:20:23 +02:00
79355ae3e8
Merge branch 'master' into core-updates
2016-09-30 12:05:27 +02:00
b94a6ca074
gnu: Add and use gettext-minimal.
...
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this. Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
2016-09-28 17:54:50 +03:00
32f70e1f86
gnu: Add gctp.
...
* gnu/packages/maths.scm (gctp): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:37:46 -04:00
538c0e3b69
gnu: openlibm: Remove support for mips.
...
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
2016-09-21 22:36:52 +03:00
883d0a7d25
gnu: openblas: Update to 0.2.19.
...
* gnu/packages/maths.scm (openblas): Update to 0.2.19.
2016-09-13 00:50:13 -04:00
5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
2016-09-12 17:44:47 +02:00
ccd9b1511e
gnu: r-pracma: Update to 1.9.5.
...
* gnu/packages/maths.scm (r-pracma): Update to 1.9.5.
[propagated-inputs]: Add "r-quadprog".
2016-09-12 17:44:40 +02:00
2d047896f9
gnu: Add r-quadprog.
...
* gnu/packages/maths.scm (r-quadprog): New variable.
2016-09-12 17:44:40 +02:00
bb76ef9d8b
Revert "gnu: gsl: Update to 2.2."
...
This reverts commit b16b16e6c2
2016-09-01 20:17:01 -04:00
b16b16e6c2
gnu: gsl: Update to 2.2.
...
* gnu/packages/maths.scm (gsl): Update to 2.2.
2016-08-30 08:39:09 +03:00
b3d2be945d
Merge remote-tracking branch 'origin/master' into core-updates
2016-08-29 23:46:33 +03:00
aa127019b5
gnu: octave: Update to 4.0.3.
...
* gnu/packages/maths.scm (octave): Update to 4.0.3.
[inputs]: Remove unnecessary curl, cyrus-sasl and openssl dependencies.
2016-08-27 08:04:21 +02:00
3c98ac0240
gnu: atlas: Update to 3.10.3.
...
* gnu/packages/maths.scm (atlas): Update to 3.10.3.
2016-08-22 10:56:03 +03:00
e5b4b96b8c
gnu: atlas: Use 'modify-phases'.
...
* gnu/packages/maths.scm (atlas)[arguments]: Use 'modify-phases'.
2016-08-19 17:41:09 +03:00
e04ae27bcf
gnu: openblas: Update to 0.2.18.
...
* gnu/packages/maths.scm (openblas): Update to 0.2.18.
2016-08-14 17:35:32 +02:00
536fc5f8cd
Merge branch 'core-updates'
2016-08-04 08:17:05 -04:00
0832787e5c
Revert "Merge branch 'core-updates'"
...
This reverts commit 455859a50f
2016-08-04 08:16:38 -04:00
b7194849ad
Rename references to (gnu packages tcsh).
...
* gnu/packages/algebra.scm, gnu/packages/boost.scm,
gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm:
Change broken references to module (gnu packages tcsh) to (gnu packages
shells).
2016-08-03 16:22:31 +02:00
455859a50f
Merge branch 'core-updates'
2016-08-01 23:30:52 +02:00
3d337bbc39
Merge branch 'master' into core-updates
2016-07-31 23:27:03 -04:00
5e74529271
gnu: units: Update to 2.13.
...
* gnu/packages/maths.scm (units): Update to 2.13.
2016-08-01 01:11:57 +02:00
101e847294
gnu: dealii: Update to 8.4.1.
...
* gnu/packages/maths.scm (dealii): Update to 8.4.1.
* gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
2016-07-31 15:22:41 +02:00
0bab3af078
Merge branch 'master' into core-updates
2016-07-29 14:18:07 -04:00
a3947cb1b8
gnu: Sync GNU descriptions with upstream.
...
From 'guix lint -c gnu-description'.
* gnu/packages/gnunet.scm (gnunet): Adjust description.
* gnu/packages/marst.scm (marst): Likewise.
* gnu/packages/maths.scm (c-graph): Likewise.
* gnu/packages/networking.scm (macchanger): Likewise.
2016-07-29 10:13:12 +02:00
5dbfbef729
gnu: lpsolve: Fix compilation issue.
...
Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html >.
* gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
2016-07-26 00:43:52 +02:00
6689d09457
gnu: lpsolve: Fail as early as possible.
...
* gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check
the return value of 'system*' and honor it.
2016-07-26 00:43:52 +02:00
430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4.
...
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
2016-07-22 18:24:22 +03:00
d7cff656df
gnu: muparser: Update source URL.
...
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
2016-07-21 18:25:20 -04:00
de67e92288
gnu: Update URLs for sourceforge.net.
...
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
2016-07-21 18:09:40 -04:00
a9c64810cd
gnu: gnuplot: Update to 5.0.4.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
2016-07-21 13:56:51 +03:00
2908087013
gnu: superlu-dist: Remove non-free source.
...
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
2016-07-20 21:16:25 -05:00
8787c555d9
gnu: slepc: Update to 3.7.1.
...
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
2016-07-20 21:16:25 -05:00
fafd623e49
gnu: petsc: Update to 3.7.2.
...
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
2016-07-20 21:16:24 -05:00
b730b43770
gnu: petsc: Make header generation reproducible.
...
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
petscmachineinfo.h header.
2016-07-20 21:16:24 -05:00
64dcc28963
gnu: petsc: Use modify-phases.
...
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
2016-07-20 21:16:24 -05:00
995a09e055
gnu: superlu: Update to 5.2.1.
...
* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
2016-07-20 18:31:16 -05:00
d721c83a63
gnu: Add libhilbert.
...
* gnu/packages/maths.scm (libhilbert): New variable.
2016-07-20 18:31:16 -05:00
8e9ba611cb
gnu: atlas: Use @example in description.
...
* gnu/packages/maths.scm (atlas)[description]: Use "@example".
2016-07-19 23:03:30 +02:00
d97c429a34
gnu: atlas: Use cpupower in description.
...
* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector'
with its replacement 'cpupower --governor'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
7b569b01d3
gnu: lapack: Build the LAPACKE library.
...
* gnu/packages/maths.scm (lapack)[arguments]: Add "-DLAPACKE=ON".
2016-07-17 11:09:31 +02:00
49f54a7454
gnu: openspecfun: Update to 0.5.2.
...
* gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
2016-07-03 10:14:16 +03:00
26f6e565a9
gnu: openlibm: Update to 0.5.1.
...
* gnu/packages/maths.scm (openlibm): Update to 0.5.1.
2016-07-03 10:07:17 +03:00
468e0b18d1
gnu: ceres-solver: Propagate GLOG.
...
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here. New field.
2016-06-29 16:08:46 +02:00
bc3a2e3503
gnu: ceres-solver: Depend on glog.
...
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
2016-06-29 12:01:05 +02:00
ad1c453731
gnu: ipopt: Use libblas from LAPACK, and fix 'Libs' in 'ipopt.pc'.
...
* gnu/packages/maths.scm (ipopt)[inputs]: Remove OPENBLAS.
[arguments]: New field.
2016-06-03 14:37:26 +02:00
f9940ef1e8
gnu: Add ceres-solver.
...
* gnu/packages/maths.scm (ceres): New variable.
2016-06-03 13:54:39 +02:00
005c787d59
gnu: Add IpOpt.
...
* gnu/packages/maths.scm (ipopt): New variable.
2016-06-02 19:11:14 +02:00
de477809d7
gnu: wxmaxima: Wrap with GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS.
...
Fixes <http://bugs.gnu.org/22709 > and <http://bugs.gnu.org/23260 >.
* gnu/packages/math.scm (wxmaxima)[arguments]: Wrap with
GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS.
2016-05-28 07:29:10 +08:00
8f9ac90182
gnu: Rename texlive module to tex.
...
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm.
* gnu/packages/texlive.scm: Rename file to tex.scm.
* gnu/packages/tex.scm: Renamed from texlive.scm.
* gnu/packages/algebra.scm: Adjust accordingly.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/gettext.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/lisp.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
2016-05-26 10:22:05 +02:00
813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
2016-05-20 15:18:23 +02:00
945eef85c5
gnu: armadillo: Update to 6.700.7.
...
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
2016-05-20 15:18:23 +02:00
9684e30b9b
gnu: flann: Do not install .a files.
...
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
2016-05-19 14:51:21 +02:00
39b3033731
gnu: flann: Strip .mex file.
...
* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
2016-05-19 14:51:21 +02:00
b7b27a8f28
gnu: octave: Update to 4.0.2.
...
* gnu/packages/maths.scm (octave): Update to 4.0.2.
[inputs]: Added cyrus-sasl, openssl.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-05-19 04:32:23 +03:00
66395a6157
gnu: gmsh: Add missing inputs.
...
* gnu/packages/maths.scm (gmsh)[inputs]: Add fontconfig, libxft.
2016-05-16 10:18:43 +03:00
e6a905070a
gnu: wxmaxima: Update to 16.04.2.
...
* gnu/packages/maths.scm (wxmaxima): Update to 16.04.2.
2016-05-15 15:49:35 +08:00
889187a464
gnu: Add NetCDF.
...
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): New variables.
2016-05-12 19:59:53 +00:00
6c90e183cf
gnu: Add Matio.
...
* gnu/packages/maths.scm (matio): New variable.
2016-05-12 19:59:52 +00:00
00775104ee
gnu: Add h5check.
...
* gnu/packages/maths.scm (h5check): New variable.
2016-05-12 19:59:52 +00:00
c8378eea10
gnu: Add hdf5-openmpi.
...
* gnu/packages/maths.scm (hdf5-openmpi): New variable.
2016-05-12 19:59:52 +00:00
b8d9c93bde
gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH.
...
* gnu/packages/patches/hdf5-config-date.patch: New patch.
* gnu/packages/maths.scm (hdf5)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-05-12 19:59:52 +00:00
f622e2123b
gnu: hdf5: Patch output references to zlib.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Use modify-phases. Add
'patch-references' phase.
2016-05-12 19:59:52 +00:00
04b7a7cd10
gnu: hdf5: Update to 1.8.17.
...
* gnu/packages/maths.scm (hdf5): Update to 1.8.17.
2016-05-12 19:59:52 +00:00
528bb46436
gnu: Add HYPRE.
...
* gnu/packages/maths.scm (hypre, hypre-openmpi): New variables.
* gnu/packages/patches/hypre-doc-tables.patch,
gnu/packages/patches/hypre-ldflags.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
2016-05-12 19:59:52 +00:00
1b39a196f8
gnu: Add nlopt.
...
* gnu/packages/maths.scm (nlopt): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-05-03 21:57:05 +02:00
c5ad883b16
gnu: r-rcpparmadillo: Update to 0.6.700.3.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
2016-04-26 17:06:18 +02:00
458b47e31b
gnu: armadillo: Update to 6.700.4.
...
* gnu/packages/maths.scm (armadillo): Update to 6.700.4.
2016-04-20 14:21:30 +02:00
fc1adab148
gnu: packages: Use 'search-patches' everywhere.
...
* gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/algebra.scm: Likewise.
* gnu/packages/animation.scm: Likewise.
* gnu/packages/apr.scm: Likewise.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/autotools.scm: Likewise.
* gnu/packages/avahi.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bash.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/ci.scm: Likewise.
* gnu/packages/cmake.scm: Likewise.
* gnu/packages/cpio.scm: Likewise.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/dico.scm: Likewise.
* gnu/packages/doxygen.scm: Likewise.
* gnu/packages/ebook.scm: Likewise.
* gnu/packages/elf.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/ftp.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gawk.scm: Likewise.
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/gd.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/gnuzilla.scm: Likewise.
* gnu/packages/graphics.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/icu4c.scm: Likewise.
* gnu/packages/idutils.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/imagemagick.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/ldc.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libevent.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libunwind.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/llvm.scm: Likewise.
* gnu/packages/lsh.scm: Likewise.
* gnu/packages/lua.scm: Likewise.
* gnu/packages/lxqt.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/mit-krb5.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/multiprecision.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ninja.scm: Likewise.
* gnu/packages/nvi.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/orpheus.scm: Likewise.
* gnu/packages/ots.scm: Likewise.
* gnu/packages/parallel.scm: Likewise.
* gnu/packages/patchutils.scm: Likewise.
* gnu/packages/pcre.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/polkit.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/qemu.scm: Likewise.
* gnu/packages/qt.scm: Likewise.
* gnu/packages/ratpoison.scm: Likewise.
* gnu/packages/rdf.scm: Likewise.
* gnu/packages/readline.scm: Likewise.
* gnu/packages/rush.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/sdl.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/tcsh.scm: Likewise.
* gnu/packages/texinfo.scm: Likewise.
* gnu/packages/tls.scm: Likewise.
* gnu/packages/tor.scm: Likewise.
* gnu/packages/tv.scm: Likewise.
* gnu/packages/valgrind.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/vtk.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/xiph.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
* gnu/packages/zip.scm: Likewise.
2016-04-14 10:38:21 +03:00
ec8c7e4734
gnu: Add r-pracma.
...
* gnu/packages/maths.scm (r-pracma): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-12 14:55:10 -04:00
9c45c51992
gnu: Add c-graph.
...
* gnu/packages/maths.scm (c-graph): New variable.
2016-04-09 09:16:48 +02:00
53696f10c1
gnu: Add cddlib.
...
* gnu/packages/maths.scm (cddlib): New variable.
2016-04-05 19:22:36 +02:00
b146763a86
gnu: Add 4ti2.
...
* gnu/packages/maths.scm (4ti2): New variable.
2016-04-05 18:48:02 +02:00
0b65f1a013
gnu: Move pspp from maths.scm to statistics.scm
...
* gnu/packages/maths.scm (pspp): Deleted.
* gnu/packages/statistics.scm (pspp): New variable.
2016-04-04 07:15:14 +02:00
fd7575d479
gnu: pspp: Update to 0.10.1.
...
* gnu/packages/maths.scm (pspp): Update to 0.10.1.
2016-04-03 08:47:35 +03:00
f04433773d
gnu: glpk: Update to 4.60.
...
* gnu/packages/maths.scm (glpk): Update to 4.60.
2016-04-01 16:52:54 +03:00
e12f047f75
gnu: pspp: Update to 0.10.0.
...
* gnu/packages/maths.scm (pspp): Update to 0.10.0.
[inputs]: Switch gtk+-2 to gtk+, gtksourceview-2 to gtksourceview.
2016-03-26 22:39:29 +03:00
dfdf571688
gnu: petsc: Fix compiler configuration references.
...
* gnu/packages/maths.scm (petsc)[arguments]: When patching compiler
driver paths, do not assume they come from fortran input.
2016-03-16 18:32:25 -05:00
d588422e13
gnu: slepc: Set origin file-name.
...
* gnu/packages/maths.scm (slepc)[source]: Add file-name.
2016-03-16 18:32:25 -05:00
eb4f2cd7e3
gnu: glpk: Update to 4.59.
...
* gnu/packages/maths.scm (glpk): Update to 4.59.
2016-03-12 23:07:09 +02:00
289adba7a3
gnu: gnuplot: Use texlive-minimal instead of texlive-bin.
...
* gnu/packages/maths.scm (gnuplot)[inputs]: Replace texlive-bin by
texlive-minimal.
2016-03-09 22:36:45 +01:00
723a6910ca
gnu: glpk: Update to 4.58.
...
* gnu/packages/maths.scm (glpk): Update to 4.58.
2016-02-18 15:35:28 +02:00
ec4130b7e7
gnu: gnuplot: Update to 5.0.2.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
2016-02-13 13:37:49 +01:00
c7b08410de
gnu: gmsh: Update to 2.11.0.
...
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
[arguments]: Replace 'check phase.
2016-01-06 10:49:23 -06:00
45147b0caa
gnu: Add xaos.
...
* gnu/packages/maths.scm (xaos): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
2015-12-31 11:29:43 +03:00
e22d4ca4c4
gnu: Add r-rcpparmadillo.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
2015-12-21 16:05:37 +01:00
b15e47f9e6
gnu: Add armadillo.
...
* gnu/packages/maths.scm (armadillo): New variable.
2015-12-21 15:47:40 +01:00
97003b5ccc
gnu: gnuplot: Update to 5.0.1.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
(native-inputs): 'texlive' -> 'texlive-bin'.
2015-11-24 11:41:46 -06:00
9cf5245497
gnu: slepc: Update to 3.6.2.
...
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
[arguments]: Append "/lib" to arpack configure flag. Use 'inputs'
rather than '%build-inputs' in 'configure phase.
2015-11-20 11:58:40 -06:00
32187d99bb
gnu: petsc: Update to 3.6.2.
...
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
2015-11-20 11:58:40 -06:00
c69fa4380a
gnu: mumps: Update to 5.0.1.
...
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
2015-11-20 11:58:40 -06:00
a124bbd2f4
gnu: Adjust formatting as recommended by 'guix lint'.
...
* gnu/packages/aidc.scm (barcode, qrencode),
gnu/packages/bash.scm (bash, bash-completion),
gnu/packages/busybox.scm (busybox),
gnu/packages/cdrom.scm (cdparanoia),
gnu/packages/cmake.scm (cmake),
gnu/packages/conkeror.scm (conkeror),
gnu/packages/cook.scm (cook),
gnu/packages/curl.scm (curl),
gnu/packages/docbook.scm (docbook-xsl),
gnu/packages/enlightenment.scm (enlightenment),
gnu/packages/games.scm (abbaye),
gnu/packages/geeqie.scm (exiv2),
gnu/packages/gimp.scm (gegl),
gnu/packages/gl.scm (glu, freeglut, ftgl),
gnu/packages/glib.scm (glib),
gnu/packages/gnome.scm (orbit2, gconf, geocode-glib),
gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base),
gnu/packages/linux.scm (util-linux),
gnu/packages/lisp.scm (gcl, ecl),
gnu/packages/maths.scm (gnuplot, hdf5),
gnu/packages/ssh.scm (dropbear),
gnu/packages/web.scm (json-c): Remove tabulations and trailing
white spaces or reformat to fit within 80 columns.
* gnu/packages/audio.scm (aubio),
gnu/packages/emacs.scm (emacs-s),
gnu/packages/engineering.scm (geda-gaf),
gnu/packages/games.scm (dosbox),
gnu/packages/gnome.scm (gusb),
gnu/packages/gtk.scm (gtk+),
gnu/packages/guile.scm (guile-wisp),
gnu/packages/hurd.scm (hurd-headers),
gnu/packages/wm.scm (i3-wm): Adjust synopsis or description.
2015-11-13 23:45:55 +08:00
0534dd93ce
gnu: gsl: Update to 2.1.
...
* gnu/packages/maths.scm (gsl): Update to 2.1.
2015-11-12 16:53:43 +02:00
295fc0829b
gnu: pspp: Use gtksourceview-2.
...
* gnu/packages/maths.scm (pspp)[inputs]: Use gtksourceview-2.
2015-11-10 13:58:25 +02:00
d8c97beb06
gnu: Add wcalc.
...
* gnu/packages/maths.scm (wcalc): New variable.
2015-11-08 23:01:50 +02:00
19659accef
gnu: octave: Upgrade to 4.0.0.
...
* gnu/packages/maths.scm (octave): Update to 4.0.0.
2015-11-08 18:44:06 +02:00
552cb93c0a
gnu: glpk: Update to 4.57.
...
* gnu/packages/maths.scm (glpk): Update to 4.57.
2015-11-08 16:27:39 +02:00
5adbe65fec
gnu: gsl: Enable tests.
...
* gnu/packages/maths.scm (gsl)[arguments]: Enable tests for i686-linux.
2015-11-02 21:04:18 +02:00
f133955122
gnu: gsl: Update to 2.0.
...
* gnu/packages/maths.scm (gsl): Update to 2.0.
[source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
2015-11-02 21:04:18 +02:00
bd0b4379b2
gnu: openblas: Make substitutable on MIPS.
...
* gnu/packages/maths.scm (openblas)[arguments]: Make package
substitutable when the system is MIPS.
2015-10-30 17:47:54 +01:00
8a637e79ed
gnu: openblas: Set TARGET to SICORTEX on MIPS.
...
* gnu/packages/maths.scm (openblas)[arguments]: Add "TARGET=SICORTEX" to
make-flags when building for MIPS.
2015-10-30 17:47:54 +01:00
69851c59c7
gnu: openblas: Update to 0.2.15.
...
* gnu/packages/maths.scm (openblas): Update to 0.2.15.
2015-10-29 15:44:31 +01:00
cbe9505778
gnu: units: Update to 2.12.
...
* gnu/packages/maths.scm (units): Update to 2.12.
2015-10-20 09:41:54 +03:00
127cbd85c0
gnu: glpk: Update to 4.56.
...
* gnu/packages/maths.scm (glpk): Update to 4.56.
2015-10-02 20:07:17 +02:00
71923a91b1
gnu: openblas: Fix configure flags on armhf and take target system into account for cross building.
...
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
and enable runtime cpu detection only on x86 systems. Take the target
system into account when cross compiling.
2015-10-01 19:35:16 +02:00
75710da667
Merge branch 'master' into core-updates
2015-09-13 21:28:01 +02:00
194c7f95f1
gnu: Add FLANN.
...
* gnu/packages/maths.scm (flann): New variable.
2015-09-06 19:34:09 +02:00
96c4621056
gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases.
...
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
2015-08-29 01:25:08 +02:00
c01876b1af
gnu: pspp: Update to 0.8.5.
...
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
[native-inputs]: Add TEXINFO.
2015-07-21 01:12:34 +02:00
e881752c39
gnu packages: Clean up synopses and descriptions.
...
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/databases.scm, gnu/packages/enchant.scm,
gnu/packages/firmware.scm, gnu/packages/fonts.scm,
gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
gnu/packages/haskell.scm, gnu/packages/language.scm,
gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
Fix typos. Trim long lines. Add missing periods in the end of sentences.
Use double spaces between sentences. Remove trailing whitespaces.
2015-07-18 13:05:01 +03:00
7c125ce023
gnu packages: Avoid description lines with leading "(".
...
* gnu/packages/curl.scm (curl): Reformat description to avoid a line
beginning with "(" because such lines break font-lock highlighting
in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
2015-07-18 13:05:01 +03:00
a17d45641b
gnu: Add deal.II.
...
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
a7f0141452
gnu: Add SLEPc.
...
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
(slepc-complex-openmpi): New variables.
2015-06-29 15:34:36 -05:00
8c94c886f6
gnu: Add arpack-ng-openmpi.
...
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
2015-06-29 15:34:36 -05:00
9a899cceab
gnu: petsc: Upgrade to 3.6.0.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29 15:34:36 -05:00
cec86422b7
gnu: Add MUMPS.
...
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
(mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
aa75ad0097
gnu: Add METIS.
...
* gnu/packages/maths.scm (metis): New variable.
2015-06-29 15:34:36 -05:00
700ff22219
gnu: Add p4est.
...
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
2015-06-29 15:34:36 -05:00
e1ff597a64
gnu: Add ScaLAPACK.
...
* gnu/packages/maths.scm (scalapack): New variable.
2015-06-29 15:34:36 -05:00
cf0ec6c46e
gnu: scotch, pt-scotch: Build esmumps libraries.
...
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
phase. Install esmumps libraries and headers in 'install phase.
(pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add
make parallelism.
2015-06-29 15:34:36 -05:00
d6602ee9d4
gnu: scotch, pt-scotch: Use modify-phases.
...
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
2015-06-29 15:34:36 -05:00
Mark H Weaver