c0b7b797a2
gnu: perl-compress-raw-bzip2: Update to 2.074.
...
* gnu/packages/compression.scm (perl-compress-raw-bzip2): Update to 2.074.
2017-03-22 12:45:55 +02:00
02b067d782
gnu: perl-compress-raw-zlib: Update to 2.074.
...
* gnu/packages/compression.scm (perl-compress-raw-zlib): Update to 2.074.
2017-03-22 12:40:05 +02:00
d8be338f16
gnu: openssh: Update to 7.5p1.
...
* gnu/packages/ssh.scm (openssh): Update to 7.5p1.
2017-03-22 02:37:31 -04:00
22f25392cf
gnu: ntp: Update to 4.2.8p10 [security fixes].
...
Fixes CVE-2016-9042 and CVE-2017-{6451,6452,6455,6458,6459,6460,6462,6463,6464}
and others. See 'NEWS' in the source code for more information.
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p10.
2017-03-22 01:41:41 -04:00
8e71896340
gnu: python-psycopg2: Update to 2.6.2.
...
* gnu/packages/python.scm (python-psycopg2): Update to 2.6.2.
2017-03-22 02:03:35 +01:00
35e1a0f1a7
gnu: python-zope-component: Update to 4.3.0.
...
* gnu/packages/python.scm (python-zope-component): Update to 4.3.0.
[source]: Use pypi-uri.
2017-03-22 02:03:35 +01:00
c56ad5e291
gnu: python-atomicwrites: Update to 1.1.5.
...
* gnu/packages/python.scm (python-atomicwrites): Update to 1.1.5.
2017-03-22 02:03:34 +01:00
4c4d4df393
gnu: python-texttable: Update to 0.8.7.
...
* gnu/packages/python.scm (python-texttable): Update to 0.8.7.
2017-03-22 02:03:34 +01:00
d5c183d134
gnu: python-feedgenerator: Update to 1.9.
...
* gnu/packages/python.scm (python-feedgenerator): Update to 1.9.
2017-03-22 02:03:34 +01:00
d25bee2600
gnu: python-wrapt: Update to 1.10.8.
...
* gnu/packages/python.scm (python-wrapt): Update to 1.10.8.
[source]: Use pypi-uri.
2017-03-22 02:03:33 +01:00
b9463fdba2
gnu: python-py: Update to 1.4.32.
...
* gnu/packages/python.scm (python-py): Update to 1.4.32.
2017-03-22 02:03:33 +01:00
5095bc7d71
gnu: python-sphinx-cloud-sptheme: Update to 1.8.0.
...
* gnu/packages/python.scm (python-sphinx-cloud-sptheme): Update to 1.8.0.
2017-03-22 02:03:33 +01:00
9e59478f8d
gnu: python-wcwidth: Update to 0.1.7.
...
* gnu/packages/python.scm (python-wcwidth): Update to 0.1.7.
[source]: Use pypi-uri.
2017-03-22 02:03:32 +01:00
4ffbe8c6d7
gnu: python-markdown: Update to 2.6.8.
...
* gnu/packages/python.scm (python-markdown): Update to 2.6.8.
2017-03-22 02:03:32 +01:00
2d431b0130
gnu: dns: Return #t instead of something undefined.
...
* gnu/packages/dns.scm (yadifa, knot)[arguments]: Return #t after calling
‘substitute*’.
(knot)[source]: Return #t after calling ‘delete-file-recursively’.
2017-03-22 02:03:31 +01:00
4f7a9e0bff
gnu: vapoursynth: Update to 37.
...
* gnu/packages/video.scm (vapoursynth): Update to 37.
2017-03-21 22:36:33 +02:00
60092c181c
gnu: zimg: Update to 2.5.
...
* gnu/packages/image.scm (zimg): Update to 2.5.
2017-03-21 22:35:32 +02:00
049e02eaa2
gnu: libesmtp: Add alternate source URL.
...
* gnu/packages/mail.scm (libesmtp)[source]: Add alternate URL.
2017-03-21 16:33:08 -04:00
a9681c74ca
gnu: python-pillow: Fix test failures with freetype-2.7.
...
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow, python2-pillow)[source]: Use it.
2017-03-21 16:20:10 -04:00
83a3464793
gnu: openblas: Add support for aarch64.
...
* gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as
substitutable, build for target ARMv8.
2017-03-21 22:03:05 +02:00
a42619e5e2
gnu: Add lmms.
...
* gnu/packages/music.scm (lmms): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:37:29 -04:00
0b608ec4ce
gnu: Add megaglest.
...
* gnu/packages/games.scm (megaglest): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
fb731c9232
gnu: Add megaglest-data.
...
* gnu/packages/games.scm (megaglest-data): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 15:15:35 -04:00
8ea71f2005
gnu: ots: Use 'modify-phases' syntax.
...
* gnu/packages/ots.scm (ots)[arguments]: Use 'modify-phases' syntax.
2017-03-21 20:58:52 +02:00
b1d3e0a93b
gnu: ots: Add download mirror.
...
* gnu/packages/ots.scm (ots)[source]: Add Debian mirror.
2017-03-21 20:58:51 +02:00
8e4b7b7514
gnu: xf86-video-vmware: Fix build failure due to missing LLVM.
...
* gnu/packages/xorg.scm (xf86-video-vmware)[inputs]: Add llvm.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-21 14:24:37 -04:00
7fc72c7731
gnu: libcmis: Update to 0.5.1.
...
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.1.
[source]: Use new source URL. Remove obsolete patch
'libcmis-fix-test-onedrive.patch'.
[home-page]: Update URL.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-21 13:38:13 -04:00
a160778cba
gnu: x265: Fix build on aarch64.
...
* gnu/packages/video.scm (x265)[arguments]: On aarch64 add a
configure-flag to enable PIC.
2017-03-21 18:01:05 +02:00
4b0e636701
gnu: Adjust asciidoc-related build options.
...
Commits 9099a457923078821d13
2017-03-21 11:15:08 -04:00
ed428a58ec
gnu: Add swaks.
...
* gnu/packages/mail.scm (swaks): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 15:42:44 +01:00
3411937b15
gnu: git: Update to 2.12.1.
...
* gnu/packages/version-control.scm (git): Update to 2.12.1.
2017-03-21 13:45:57 +01:00
6330ece9e3
gnu: Add perl-ole-storage-lite.
...
* gnu/packages/perl.scm (perl-ole-storage-lite): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:47 +01:00
2b9d2df799
gnu: Add perl-crypt-rc4.
...
* gnu/pakages/perl.scm (perl-crypt-rc4): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-21 12:55:43 +01:00
4b9a5bd990
gnu: kodi: Wrap executable so it finds libcurl.
...
* gnu/packages/kodi.scm (kodi)[arguments]: Add 'wrap' phase.
2017-03-21 12:37:41 +01:00
f826c8c7ee
gnu: go@1.4, go@1.7: Skip test that fails with tzdata-2017a.
...
* gnu/packages/golang.scm (go-1.4, go-1.7)[arguments]: Disable the test
TestParseInLocation in 'prebuild' phase.
2017-03-21 01:30:39 -04:00
3b4efb1f45
gnu: dtc: Update to 1.4.4.
...
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.4.
[source]: Use mirror://kernel.org.
2017-03-21 01:13:06 +01:00
d3d92ec2ba
gnu: greenisland: Update to 0.9.0.1.
...
* gnu/packages/display-managers.scm (greenisland): Update to 0.9.0.1.
2017-03-21 01:13:06 +01:00
38190ea5ef
gnu: vim: Update to 8.0.0494.
...
* gnu/packages/patches/vim-CVE-2017-5953.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0494.
[source]: Remove patch.
(vim-full)[arguments]: Add two phases to drop tests and start xorg.
[native-inputs]: Add XORG-SERVER.
2017-03-20 23:35:39 +01:00
f69e20341f
gnu: kodi: Update to 18.0_alpha-0-b35147e.
...
* gnu/packages/kodi.scm (libdvdnav/kodi, libdvdread/kodi, libdvdcss/kodi): New
variables.
(kodi): Update to 18.0_alpha-0-b35147e.
[source]: Download from git. Unbundle more stuff.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flag to disable nonfree components. Rework phases
to patch bundled software and bootstrap more libraries.
[native-inputs]: Remove CMAKE, DOXYGEN, GAWK and WHICH. Add LIBDVDCSS/KODI,
LIBDVDNAV/KODI and LIBDVDREAD/KODI.
[inputs]: Remove BOOST, BZIP2, ENCA, GPERF, JASPER, LIBMODPLUG, LIBSAMPLERATE,
LIBXMU, LIBXT, MESA-UTILS, SDL2 and UNZIP. Add FMT, GIFLIB, LCMS and LIBDRM.
[license]: Update for remaining software bundles.
2017-03-20 23:35:39 +01:00
0a15ee7b63
gnu: Add fmt.
...
* gnu/packages/pretty-print.scm (fmt): New variable.
2017-03-20 23:35:39 +01:00
deee8a9dfc
gnu: Remove leftover patch.
...
* gnu/packages/patches/openjpeg-use-after-free-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-20 18:25:02 -04:00
957699ee92
gnu: openjpeg: Remove obsolete patches.
...
* gnu/packages/patches/openjpeg-CVE-2016-5157.patch,
gnu/packages/patches/openjpeg-CVE-2016-7163.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg)[source]: Remove them.
2017-03-20 18:24:58 -04:00
4140b86bea
gnu: php: Update to 7.1.3.
...
* gnu/packages/php.scm (php): Update to 7.1.3.
2017-03-20 23:09:22 +01:00
bd0c62315b
gnu: bristol: Fix build failure with alsa-lib 1.1.x.
...
* gnu/packages/music.scm (bristol)[arguments]: Add build phase to fix build
failure with alsa-lib 1.1.x.
2017-03-20 22:44:26 +01:00
6809d9377b
gnu: ngircd: Use HTTPS.
...
* gnu/packages/messaging.scm (ngircd)[source, home-page]: Use HTTPS.
2017-03-20 22:44:06 +01:00
07b7a66526
gnu: ngircd: Use the phrase ‘IRC’ in its description.
...
* gnu/packages/messaging.scm (ngircd)[description]: Use ‘IRC’ with @dfn.
2017-03-20 22:44:06 +01:00
341ed63f47
gnu: ngircd: Use ‘modify-phases’ syntax.
...
* gnu/packages/messaging.scm (ngircd)[arguments]: Use ‘modify-phases’.
2017-03-20 22:44:06 +01:00
4fd95d9170
gnu: ngircd: Update to 24.
...
* gnu/packages/messaging.scm (ngircd): Update to 24.
[source]: Remove upstreamed DNS lookup patch.
* gnu/packages/patches/ngircd-no-dns-in-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-20 22:44:06 +01:00
500fc65b5b
gnu: znc: Run test suite.
...
* gnu/packages/messaging.scm (znc)[arguments]: Enable tests. Add an
‘unpack-googletest’ phase and add ‘--with-gtest=’ to #:configure-flags.
[native-inputs]: Add googletest source.
2017-03-20 22:44:05 +01:00
f0bce02664
gnu: simple-scan: Update to 3.24.0.
...
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.0.
2017-03-20 22:44:05 +01:00
e2c4fe7c62
gnu: Add r-cairo.
...
* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
94e24d8124
gnu: Add comments on why setting QT_QPA_PLATFORM for tests.
...
* gnu/packages/astronomy.scm (stellarium): Add comment.
* gnu/packages/display-managers.scm (greenisland): dito.
* gnu/packages/kde-frameworks.scm (kguiaddons, kwidgetsaddons,
kcompletion, baloo, kbookmarks, kconfigwidgtes, kdesignerplugin,
kemoticons, kglobalaccel, kiconthemes, kio, knewstuff, kparts,
kpeople, krunner, kservice, ktexteditor, ktextwidgets, kxmlgui,
plasma-framework): dito.
* gnu/packages/qt.scm (qtsvg): dito.
2017-03-20 20:56:49 +01:00
4e6509b27f
gnu: mesa: Correct another typo.
...
* gnu/packages/gl.scm (mesa)[arguments]: Fix typo (svrast -> swrast).
2017-03-20 21:44:00 +02:00
0b5d078f8b
gnu: Add freedoom.
...
* gnu/packages/games.scm (freedoom): New variable.
2017-03-20 14:29:44 -04:00
80042ae93d
gnu: wget: Fix test-504 failures.
...
* gnu/packages/wget.scm (wget)[source]: Add patch.
* gnu/packages/patches/wget-fix-504-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-20 20:07:56 +02:00
6f9ba4c91c
gnu: Remove wxwidgets@2.8.
...
* gnu/packages/wxwidgets.scm (wxwidgets@2.8): Remove variable.
2017-03-20 18:33:30 +02:00
36e17ab417
gnu: audacity: Use gtk+@3.
...
* gnu/packages/audacity.scm (audacity)[inputs]: Remove wxwidgets-gtk2,
gtk+@2, add wxwidgets and gtk+.
2017-03-20 18:04:01 +02:00
2314474b01
gnu: wxwidgets: Build with webkitgtk.
...
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Remove webkitgtk@2.4,
add webkitgtk.
2017-03-20 18:02:41 +02:00
4f9998c66f
gnu: snakemake: Add runtime dependencies.
...
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-wrapt and
python-requests.
2017-03-20 15:13:19 +01:00
0420e89682
gnu: mpd: Update to 0.20.6.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.6.
2017-03-19 21:55:09 -04:00
1a0c4437ab
gnu: Add deutex.
...
gnu/packages/game-development.scm (deutex): New variable.
2017-03-19 21:43:05 -04:00
f75b1400ee
gnu: obnam: Enable tests.
...
* gnu/packages/backup.scm (obnam)[arguments]: Replace 'check' phase with
custom function.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:32 +01:00
315944a393
gnu: Add python-pylint.
...
* gnu/packages/python.scm (python-pylint, python2-pylint): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
61550dedf3
gnu: Add python2-coverage-test-runner.
...
* gnu/packages/python.scm (python2-coverage-test-runner): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:31 +01:00
23db3fc67d
gnu: Add python-configparser.
...
* gnu/packages/python.scm (python-configparser, python2-configparser): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
965a083ed2
gnu: Add python2-backports-functools-lru-cache.
...
* gnu/packages/python.scm (python2-backports-functools-lru-cache): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
6ba0af7960
gnu: Add python-isort.
...
* gnu/packages/python.scm (python-isort, python2-isort): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
d5ef113c05
gnu: Add python-astroid.
...
* gnu/packages/python.scm (python-astroid, python2-astroid): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-20 00:40:30 +01:00
6fdbd86d0f
gnu: Add libircclient.
...
* gnu/packages/messaging.scm (libircclient): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 19:18:06 -04:00
f67337e23e
Merge branch 'master' into core-updates
2017-03-19 18:52:12 -04:00
b99eec83b8
gnu: librep: Update to 0.92.6.
...
* gnu/packages/sawfish.scm (librep): Update to 0.92.6.
[arguments]: New field.
[native-inputs]: Add AUTOCONF-WRAPPER, AUTOMAKE, and LIBTOOL.
2017-03-19 23:42:58 +01:00
d5c969ce0c
gnu: lsh: Use libc's argp instead of the bundled one.
...
* gnu/packages/ssh.scm (lsh)[arguments] <#:configure-flags>: Add
--with-system-argp and CPPFLAGS=-DHAVE_ARGP_PARSE.
<#:phases>: In 'pre-configure' phase, modify src/Makefile.in.
2017-03-19 23:42:57 +01:00
5927a843b4
gnu: python-minimal@2: Add dependencies on libffi and zlib.
...
* gnu/packages/python.scm (python2-minimal)[inputs]: Add LIBFFI and ZLIB.
[arguments]: Remove.
2017-03-19 23:42:57 +01:00
4ed0628737
gnu: elogind: Build with gperf 3.0.
...
* gnu/packages/gperf.scm (gperf-3.0): New variable.
* gnu/packages/freedesktop.scm (elogind)[native-inputs]: Use GPERF-3.0
instead of GPERF.
2017-03-19 23:42:57 +01:00
e05fc441cd
gnu: Add pdfgrep.
...
* guix/gnu/packages/pdf.scm (pdfgrep): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-19 18:30:10 -04:00
4c20b0bcf7
gnu: graphite2: Fix test failure caused by rounding error on 32-bit CPUs.
...
* gnu/packages/patches/graphite2-ffloat-store.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (graphite2): Use it.
2017-03-19 17:32:44 -04:00
8299c697af
gnu: linux-libre: Update to 4.10.4.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.4.
(%linux-libre-hash): Update hash.
2017-03-19 17:18:15 -04:00
92c42164a2
gnu: linux-libre@4.9: Update to 4.9.16.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.16.
2017-03-19 17:16:38 -04:00
9baf0171a4
gnu: linux-libre@4.4: Update to 4.4.55.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.55.
2017-03-19 17:14:56 -04:00
fc1bfca253
gnu: u-boot: Update to 2017.03.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.03.
2017-03-19 21:35:17 +01:00
717c659630
gnu: mesa: Fix another typo.
...
This is a followup to commit 2a8b89c27f
2017-03-19 16:05:16 -04:00
6191fef4e0
gnu: icecat: Add selected fixes from upstream mozilla-esr45.
...
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes from
the upstream mozilla-esr45 repository.
2017-03-19 15:55:06 -04:00
512fc6db7b
gnu: libevent@2.0: Add fix from upstream.
...
This fix was cherry-picked by Mozilla from upstream libevent-2.1 to its
bundled copy of libevent-2.0.21 in mozilla-esr45.
* gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent-2.0)[source][patches]: Add it.
2017-03-19 15:54:58 -04:00
7c86c03109
gnu: guile-commonmark: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-commonmark)[inputs]: Replace GUILE-2.0
with GUILE-2.2.
(guile2.0-commonmark): New variable.
(guile2.2-commonmark): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-COMMONMARK.
2017-03-19 18:14:22 +01:00
bdf1022dec
gnu: guile-reader: Default to Guile 2.2.
...
* gnu/packages/guile.scm (guile-reader)[inputs]: Change GUILE-2.0 to
GUILE-2.2.
(guile2.0-reader): New variable.
(guile2.2-reader): Mark as deprecated.
(haunt)[propagated-inputs]: Use GUILE-READER instead of
GUILE2.2-READER.
2017-03-19 18:14:22 +01:00
bd19f65a85
gnu: haunt: Default to Guile 2.2.
...
* gnu/packages/guile.scm (haunt)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
[propagated-inputs]: Replace GUILE-READER and GUILE-COMMONMARK with
their 2.2 variant.
(guile2.0-haunt): New variable.
(guile2.2-haunt): Mark as deprecated.
2017-03-19 18:14:22 +01:00
8f4acad71b
gnu: Add 'package-for-guile-2.0'.
...
* gnu/packages/guile.scm (guile-2.2-package-name): Rename to...
(guile-variant-package-name): ... this. Change to return a lambda.
(package-for-guile-2.2): Adjust accordingly.
(package-for-guile-2.0): New procedure.
2017-03-19 18:14:22 +01:00
f6396d862f
gnu: Rename "guile-next" to "guile".
...
* gnu/packages/guile.scm (guile-next): Rename to...
(guile-2.2): ... this. Update users.
[name]: Change to "guile".
[synopsis]: Remove.
[properties]: Remove 'upstream-name', 'ftp-server', and
'ftp-directory'.
* gnu/packages/bioinformatics.scm (rcas-web): Update accordingly.
* gnu/packages/tls.scm (gnutls/guile-2.2): Likewise.
* tests/guix-build.sh: Use 'guile@2.2' instead of 'guile-next'.
* doc/guix.texi (Package Transformation Options): Update examples that
referred to "guile-next".
2017-03-19 18:14:22 +01:00
8df672aad5
gnu: Add GNU Mach.
...
* gnu/packages/hurd.scm (gnumach): New variable.
Co-authored-by: Rene Saavedra <rennes@openmailbox.org>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-19 18:14:22 +01:00
f729a4d8b2
gnu: niftilib: Simplify build phases.
...
* gnu/packages/image.scm (niftilib)[arguments]: Use make-flags instead of
replacing "configure" phase; simplify "install" phase.
2017-03-19 14:26:33 +01:00
ea50fb8d03
gnu: libepoxy: Add support for aarch64.
...
* gnu/packages/gl.scm (libepoxy)[arguments]: Add substitution to support
aarch64.
2017-03-19 11:13:08 +02:00
3d3d4014c2
gnu: libepoxy: Update to 1.4.1.
...
* gnu/packages/gl.scm (libepoxy): Update to 1.4.1.
[home-page]: Use https.
2017-03-19 10:56:40 +02:00
eba72e1716
gnu: apl: Update to 1.7.
...
* gnu/packages/apl.scm (apl): Update to 1.7.
[home-page]: Use https.
2017-03-18 21:28:20 +02:00
525acb6e82
gnu: guile-8sync: Update to 0.4.2.
...
* gnu/packages/guile.scm (guile-8sync): Update to 0.4.2.
2017-03-18 12:22:13 -05:00
57d0bdf8c6
gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH.
...
* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
prevent problems anymore.
2017-03-18 18:26:11 +01:00
7601b9f7ce
gnu: wine: Update to 2.4.
...
* gnu/packages/wine.scm (wine): Update to 2.4.
2017-03-18 17:26:02 +01:00
21122bd79e
gnu: Add niftilib.
...
* gnu/packages/image.scm (niftilib): New variable.
2017-03-18 15:25:59 +01:00
d54db52e7f
bug#26152: [PATCH] gnu: limnoria: Update to 20170110.
...
* gnu/packages/irc.scm (limnoria): Update to 20170110.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-18 11:51:21 +01:00
84aac61c81
gnu: rustc: Fix process test.
...
* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests. Add another substitution.
2017-03-18 10:37:02 +01:00
6d5f63b690
gnu: Add maxflow.
...
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
a53d6719bc
gnu: Add itpp.
...
* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
b6bd9a79d4
gnu: emacs-slime: Update to 2.19.
...
* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
2017-03-18 01:49:38 +01:00
55f7a27cee
gnu: ocaml-qtest: Update to 2.5.
...
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
2017-03-18 09:52:29 +10:00
7c78beb33c
gnu: libbluray: Update to 1.0.0.
...
* gnu/packages/video.scm (libbluray): Update to 1.0.0.
2017-03-17 20:41:16 +01:00
715dd13d8e
gnu: libx264: Update to 20170316-2245.
...
* gnu/packages/video.scm (libx264): Update to 20170316-2245.
2017-03-17 20:41:15 +01:00
2a047d59e0
gnu: libwebp: Update to 0.6.0.
...
* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
cbef2796ed
gnu: ninja: Update to 1.7.2.
...
* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-17 20:41:15 +01:00
039601e097
gnu: btrfs-progs: Use @dfn in description.
...
* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
2017-03-17 20:39:58 +01:00
0d3ddd490b
gnu: btrfs-progs: Update to 4.10.1.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
2017-03-17 20:39:58 +01:00
893bc3f402
gnu: cargo: Use upstream cargo.
...
* gnu/packages/rust.scm (cargo): Use upstream cargo.
2017-03-17 16:48:08 +01:00
b0dcb529af
gnu: rust: Update to 1.15.0.
...
* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
2017-03-17 16:48:06 +01:00
8f98581613
gnu: libpng-apng: Remove unnecessary call to libtool.
...
* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
2017-03-17 11:36:27 -04:00
114a325e8f
gnu: Add libpng-apng.
...
* gnu/packages/image.scm (libpng-apng): New variable.
Co-authored-by: Kei Kebreau <kei@openmailbox.org>
2017-03-17 11:25:15 -04:00
0a3063d640
gnu: Add ocaml-mcl.
...
* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
2017-03-17 21:43:27 +10:00
ba1be533ad
gnu: Add ocaml-gsl.
...
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
91df9eaefa
gnu: Add ocaml-csv.
...
* gnu/packages/ocaml.scm (ocaml-csv): New variable.
2017-03-17 21:43:13 +10:00
0c4dbdc23e
gnu: Add ocaml-sqlite3.
...
* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
2017-03-17 21:19:23 +10:00
ef71ed8ffa
gnu: snakemake: Update to 3.11.2.
...
* gnu/packages/python.scm (snakemake): Update to 3.11.2.
2017-03-17 10:14:03 +01:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
54d556bdd7
gnu: youtube-dl: Update to 2017.03.16.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
2017-03-17 03:11:35 +01:00
3078821d13
gnu: asciidoc: Use local docbook-xml package.
...
* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
2017-03-16 21:35:50 -04:00
f9cdf1c15b
gnu: Add knot.
...
* gnu/packages/dns.scm (knot): New variable.
2017-03-17 02:32:01 +01:00
754667f0eb
gnu: Add liburcu.
...
* gnu/packages/datastructures.scm (liburcu): New variable.
2017-03-17 02:32:00 +01:00
366efcb2fb
gnu: dns: Fix typo and use @dfn in descriptions.
...
* gnu/packages/dns.scm (bind)[description]: Use @dfn to expand acronyms.
(yadifa)[description]: Likewise, and fix a typo.
2017-03-17 02:32:00 +01:00
2ec5ba859f
gnu: linux-libre: Update to 4.10.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.3.
(%linux-libre-hash): Update hash.
2017-03-16 19:40:40 -04:00
2044306f05
gnu: linux-libre@4.4: Update to 4.4.54.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.54.
2017-03-16 19:40:39 -04:00
bcc5b74173
gnu: linux-libre@4.9: Update to 4.9.15.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.15.
2017-03-16 19:40:39 -04:00
49ac6dbb0a
gnu: qemu: Fix CVE-2017-{2620,2630}.
...
* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
2017-03-16 19:40:08 -04:00
1e5b8beeff
gnu: virglrenderer: Fix CVE-2017-6386.
...
* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
2017-03-16 19:39:55 -04:00
38c4ca4141
gnu: mesa: Fix typo.
...
The typo caused the configure phase to fail like this:
"configure: error: classic DRI driver '915' does not exist"
This is a followup to commit c5e91014a2
2017-03-16 17:51:56 -04:00
2c715a9223
gnu: password-store: Fix compatibility with GnuPG 2.1.19.
...
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-03-16 19:58:43 +01:00
2441c28414
gnu: Add r-seurat.
...
* gnu/packages/bioinformatics.scm (r-seurat): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-03-16 14:54:58 +01:00
79849358f8
gnu: sra-tools: Update to 2.8.2-1.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
2017-03-16 13:40:36 +01:00
d5e1716239
gnu: ncbi-vdb: Install configuration files.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase
"install-configuration-files".
2017-03-16 13:39:53 +01:00
558e23074e
gnu: ncbi-vdb: Override search path for java-ngs.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl"
to ensure that java-ngs is found by the configure script; remove configure
flag "--with-ngs-java-prefix".
2017-03-16 13:38:39 +01:00
4cacd87e4d
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-16 13:11:28 +02:00
701111989e
gnu: ncbi-vdb: Use modify-phases syntax.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases
syntax.
2017-03-16 10:20:56 +01:00
5021f54787
gnu: ncbi-vdb: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
2017-03-16 10:19:25 +01:00
6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
2017-03-16 10:18:48 +01:00
56f76b08be
gnu: jack-2: Fix build by patching fast_rand.
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* gnu/packages/audio.scm (jack-2)[arguments]: Add phase "patch-fast_rand" to
apply upstream fixes.
2017-03-16 09:41:20 +01:00
5707ce6e4b
Revert "gnu: bdftopcf: Use libxfont2."
...
Building with libxfont2 leads to an error in the configure phase:
"No package 'xfont' found"
This reverts commit 2060b4d95f
2017-03-16 02:06:56 -04:00
0f03c53168
gnu: Add pzstd.
...
* gnu/packages/compression.scm (pzstd): New variable.
2017-03-16 05:44:02 +01:00
f6ac3101ff
gnu: Add zstd.
...
* gnu/packages/compression.scm (zstd): New variable.
2017-03-16 05:44:02 +01:00
9186216268
gnu: python-publicsuffix2: Update to 2.20160818.
...
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
2017-03-16 05:44:02 +01:00
192b887a03
gnu: awscli: Update to 1.11.63.
...
* gnu/packages/python.scm (awscli): Update to 1.11.63.
2017-03-16 05:44:01 +01:00
d93985fe22
gnu: python-botocore: Update to 1.5.26.
...
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
2017-03-16 05:44:01 +01:00
70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1.
...
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
2017-03-16 05:44:01 +01:00
26a657f06a
gnu: Add prboom-plus.
...
* gnu/packages/games.scm (prboom-plus): New variable.
2017-03-15 23:14:42 -04:00
5b5cf3c765
gnu: Add tftp-hpa.
...
* gnu/packages/networking.scm (tftp-hpa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 18:24:30 -04:00
80a725726d
gnu: guile-next: Update to 2.2.0.
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* gnu/packages/guile.scm (guile-next): Update to 2.2.0.
2017-03-15 22:59:40 +01:00
dce8ac54b4
gnu: profanity: Make the source URL version-agnostic.
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* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source
URL.
2017-03-15 17:20:27 -04:00
cf8d068775
gnu: units: Update to 2.14.
...
* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
3d602acb13
gnu: no-more-secrets: Update to 0.3.2.
...
* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2.
2017-03-15 22:19:40 +01:00
7ea523853c
gnu: mailutils: Update to 3.2.
...
* gnu/packages/mail.scm (mailutils): Update to 3.2.
2017-03-15 22:19:40 +01:00
f38607536e
gnu: Use INSTALL-FILE where appropriate.
...
* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler
INSTALL-FILE for COPY-FILE when invoked with redundant arguments.
* gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity,
edirect, fasttree, rsem, samtools-0.1): Likewise.
* gnu/packages/code.scm (withershins): Likewise.
* gnu/packages/conky.scm (conky): Likewise.
* gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise.
* gnu/packages/engineering.scm (librecad): Likewise.
2017-03-15 22:19:39 +01:00
618e4bfbad
gnu: cryptsetup: Update to 1.7.4.
...
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4.
2017-03-15 22:19:39 +01:00
4e128dd582
gnu: man-pages: Update to 4.10.
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* gnu/packages/man.scm (man-pages): Update to 4.10.
[home-page]: Use HTTPS.
2017-03-15 22:19:38 +01:00
a829c6501b
gnu: Add profanity.
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* gnu/packages/messaging.scm (profanity): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
781d3b070c
gnu: Add libstrophe.
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* gnu/packages/messaging.scm (libstrophe): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
13292ee570
gnu: Add libmesode.
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* gnu/packages/messaging.scm (libmesode): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
9e61d1534a
gnu: bitcoin-core: Update to 0.14.0.
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* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0.
2017-03-15 15:48:43 -04:00
b8f99f4ae3
gnu: nss, nss-certs: Update to 3.29.3.
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* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
2017-03-15 17:57:51 +01:00
d027b0011f
gnu: nss: Increase test timeouts.
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* gnu/packages/patches/nss-increase-test-timeout.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (nss)[source]: Use it.
2017-03-15 17:56:05 +01:00
1461dd2410
Revert "Revert "gnu: nss: Build for aarch64-linux with 64-bit support.""
...
This reverts commit adb984d23c
2017-03-15 17:53:27 +01:00
db3c06d511
gnu: nss: Use 'modify-phases' syntax.
...
* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
2017-03-15 17:53:24 +01:00
4b7e5c1131
Merge branch 'master' into core-updates
2017-03-15 17:52:26 +01:00
adb984d23c
Revert "gnu: nss: Build for aarch64-linux with 64-bit support."
...
Temporary revert to fix messy merge conflict!
This reverts commit 568004c3c9
2017-03-15 17:51:23 +01:00
bd102157a1
gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313].
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.22.
2017-03-15 15:08:31 +01:00
378640ec37
gnu: qemu-minimal: Add aarch64 to target list.
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* gnu/packages/qemu.scm (qemu-minimal)[arguments]: Add 'aarch64-softmmu'
to the target list.
2017-03-15 15:58:02 +02:00
27bf00e691
gnu: python-waf: Update to 1.9.8.
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* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
2017-03-15 13:08:56 +02:00
283234a309
gnu: direnv: Update to 2.11.3.
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* gnu/packages/shellutils.scm (direnv): Update to 2.11.3.
2017-03-15 03:45:57 +01:00
68c10f31f9
gnu: conky: Update to 1.10.6.
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* gnu/packages/conky.scm (conky): Update to 1.10.6.
2017-03-15 03:45:56 +01:00
708e76287c
gnu: obs: Update to 18.0.1.
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* gnu/packages/video.scm (obs): Update to 18.0.1.
2017-03-15 03:45:56 +01:00
17753e6edb
gnu: youtube-dl: Update to 2017.03.15.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15.
2017-03-15 03:45:55 +01:00
a988cbb766
gnu: stress-make: Fix description.
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* gnu/packages/debug.scm (stress-make)[description]: Fix typo.
Avoid ambiguous use of ‘in order’.
2017-03-15 03:45:55 +01:00
d540156c69
gnu: znc: Update to 1.6.5.
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* gnu/packages/messaging.scm (znc): Update to 1.6.5.
2017-03-15 03:43:21 +01:00
6d57723ac8
gnu: grue-hunter: Correctly install documentation.
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* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate
‘/share/doc/grue-hunter’ as a directory, not a plain file.
2017-03-15 01:10:31 +01:00
b2d748edff
gnu: samtools: End installation phases with truth.
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* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]:
Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE.
2017-03-15 01:10:30 +01:00
35dcfed370
gnu: w3m: Update to 0.5.3+git20170102 [security fixes].
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See 'NEWS' and 'ChangeLog' in the source distribution for more
information about the security-related bug fixes.
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102.
2017-03-14 18:26:28 -04:00
2eab5db300
Revert "gnu: gitolite: Fix shebangs in hooks."
...
This change embedded store references in the shebangs of scripts that
were meant to be copied out of the store. Those scripts would break when
the interpreters expected by the shebangs were garbage collected.
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28 >
This reverts commit d0c16adb19
2017-03-14 18:26:28 -04:00
796d2f2d0b
Revert "gnu: nss: Use 'modify-phases' syntax."
...
This reverts commit 87f1c7efc1
2017-03-14 22:29:18 +01:00
031349075a
Revert "gnu: nss, nss-certs: Update to 3.29.3."
...
Hydra failed to build this version. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html .
This reverts commit 4f3dcdd99b
2017-03-14 22:26:18 +01:00
edda7ebec1
gnu: Add ocaml-ppx-typerep-conv.
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* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
2017-03-14 22:09:56 +01:00
d2203187fe
gnu: Add ocaml-ppx-let.
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* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
2017-03-14 22:09:50 +01:00
250ac438e7
gnu: Add ocaml-ppx-enumerate.
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* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
2017-03-14 22:09:48 +01:00
a43160ee6f
gnu: Add ocaml-ppx-assert.
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* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
2017-03-14 22:09:46 +01:00
651563bd71
gnu: Add ocaml-ppx-here.
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* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
2017-03-14 22:09:44 +01:00
14af90cfbd
gnu: Add ocaml-ppx-variants-conv.
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* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
2017-03-14 22:09:41 +01:00
334436f051
gnu: Add ocaml-ppx-sexp-conv.
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* gnu/packages/ocaml.scm (ocaml-ppx-sexp-conv): New variable.
2017-03-14 22:09:39 +01:00
d1d90df63b
gnu: Add ocaml-variantslib.
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* gnu/packages/ocaml.scm (ocaml-variantslib): New variable.
2017-03-14 22:09:37 +01:00
ef0051b2c5
gnu: Add ocaml-typerep.
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* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
2017-03-14 22:09:33 +01:00
d19c1b4105
gnu: Add ocaml-sexplib.
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* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.
2017-03-14 22:09:14 +01:00
77c5d63f4d
gnu: libidn2: Create 'pkg-config' file.
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* gnu/packages/libidn.scm (libidn2)[arguments]: Add phase creating libidn2.pc.
2017-03-14 21:29:27 +01:00
9099a45792
gnu: asciidoc: Add XML and XSLT support.
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* gnu/packages/documentation.scm (asciidoc)[arguments]: Add
set-xml-binary-paths phase.
[inputs]: Add libxml2 and libxslt.
2017-03-14 15:57:54 -04:00
568004c3c9
gnu: nss: Build for aarch64-linux with 64-bit support.
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* gnu/packages/gnuzilla.scm (nss)[arguments]: Set the environmental
variable 'USE_64' on aarch64-linux also.
2017-03-14 20:48:39 +02:00
044006f3d2
gnu: mesa: Enable gallium tests.
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* gnu/packages/gl.scm (mesa)[arguments]: Add configure flag to enable
the gallium tests.
2017-03-14 20:48:36 +02:00
2a8b89c27f
gnu: mesa: Customize build flags based on architecture.
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* gnu/packages/gl.scm (mesa)[arguments]: On armhf-linux and
aarch64-linux remove the i915 gallium driver and add freedreno and vc4.
2017-03-14 20:48:32 +02:00
c5e91014a2
gnu: mesa: Use llvm backend for Intel hardware only.
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* gnu/packages/gl.scm (mesa)[inputs]: Only use llvm for i686-linux and
x86_64-linux.
[arguments]: Only pass '--enable-gallium-llvm' to 'configure on
i686-linux and x86_64-linux.
2017-03-14 20:48:27 +02:00
9b05ccfedd
gnu: linux-libre@4.1: Update to 4.1.39.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.39.
2017-03-14 12:55:20 -04:00
962cbb24c5
gnu: windowmaker: Use modify-phases syntax.
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* gnu/packages/gnustep.scm (windowmaker)[arguments]: Use modify-phases.
2017-03-14 12:10:16 -04:00
8cac5bca12
gnu: windowmaker: Update to 0.95.8.
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* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.8.
2017-03-14 12:10:12 -04:00
d779305db0
gnu: aria2: Update to 1.31.0.
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* gnu/packages/bittorrent.scm (aria2): Update to 1.31.0.
2017-03-14 15:05:27 +02:00
28958b646f
gnu: python-parsedatetime: Update to 2.3.
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Version 2.1 was apparently time-sensitive and started failing like this:
======================================================================
FAIL: testFloat (tests.TestDelta.test)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 64, in testFloat
self.cal.parse('1.4 months ago', self.source), months=-1.4)
File "/tmp/guix-build-python2-parsedatetime-2.1.drv-0/parsedatetime-2.1/tests/TestDelta.py", line 37, in assertDelta
self.assertTrue(diff < 0.05, '%s is not less than 0.05' % diff)
AssertionError: 0.0666666666667 is not less than 0.05
----------------------------------------------------------------------
* gnu/packages/python.scm (python-parsedatetime): Update to 2.3.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
[propagated-inputs]: New field.
2017-03-14 11:18:16 +01:00
a4651f6411
gnu: Add dovecot-libsodium-plugin.
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* gnu/packages/mail.scm (dovecot-libsodium-plugin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
944a5cdd0d
gnu: Add dovecot-trees.
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* gnu/packages/mail.scm (dovecot-trees): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-14 10:28:57 +01:00
49c2a46e74
gnu: python@2.7: Update to 2.7.13
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* gnu/packages/python.scm (python-2.7): Update to 2.7.13.
2017-03-14 02:45:23 -04:00
dc5cec21f2
gnu: python@2.7: Fix getentropy() calls on kernels < 3.17.
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* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
2017-03-14 02:45:23 -04:00
a70782d37b
gnu: wireless-regdb: Update to 2017.03.07.
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* gnu/packages/linux.scm (wireless-regdb): Update to 2017.03.07.
2017-03-14 01:58:35 -04:00
0f11f64022
gnu: guile-cairo: Honor the Guile effective version.
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* gnu/packages/gtk.scm (guile-cairo)[arguments]: Add #:modules.
Get the effective version of Guile and use that in installation
directory names.
2017-03-13 22:26:54 +01:00
b97438650d
gnu: guile-cairo: Use 'modify-phases'.
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* gnu/packages/gtk.scm (guile-cairo)[arguments]: Use 'modify-phases'.
2017-03-13 22:18:13 +01:00
3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-13 23:08:49 +02:00
12773de3e7
gnu: Add guile2.2-lib.
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* gnu/packages/guile.scm (guile2.2-lib): New variable.
2017-03-13 21:52:38 +01:00
864a9590ad
gnu: luajit: Update to 2.1.0-beta2.
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* gnu/packages/lua.scm (luajit): Update to 2.1.0-beta2.
2017-03-13 21:47:30 +02:00
7cb68a3cb3
gnu: Remove python-3.4.
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* gnu/packages/python.scm (python-3.4): Remove variable.
* gnu/packages/patches/python-3.4-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-13 15:33:54 -04:00
a71c863834
gnu: Add python-flask-login.
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* gnu/packages/python.scm (python-flask-login, python2-flask-login): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:56 +01:00
78c5566365
gnu: Add python-flask-htmlmin.
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* gnu/packages/python.scm (python-flask-htmlmin, python2-flask-htmlmin): New
variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:55 +01:00
35db2d3cb7
gnu: Add python-htmlmin.
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* gnu/packages/python.scm (python-htmlmin, python2-htmlmin): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-13 19:36:54 +01:00
1bbbb0b4af
gnu: diffoscope: Update to 78.
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* gnu/packages/package-management.scm (diffoscope): Update to 78.
2017-03-13 19:16:19 +01:00
8298df96ac
gnu: Add minizip.
...
* gnu/packages/compression.scm (minizip): New variable.
2017-03-13 19:16:19 +01:00
dd8ecb386c
gnu: notmuch: Update to 0.24.
...
* gnu/packages/mail.scm (notmuch, python-notmuch, python2-notmuch): Update to
0.24.
2017-03-13 18:21:23 +01:00
17fb6fb105
gnu: xf86-video-intel: Update to 2.99.917-4-7e9e92c.
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* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-4-7e9e92c.
2017-03-13 18:21:23 +01:00
ca453df7c8
gnu: xf86-video-nouveau: Update to 1.0.14.
...
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.14.
2017-03-13 18:21:22 +01:00
4f3dcdd99b
gnu: nss, nss-certs: Update to 3.29.3.
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* gnu/packages/gnuzilla.scm (nss): Update to 3.29.3.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.3.
2017-03-13 18:21:22 +01:00
87f1c7efc1
gnu: nss: Use 'modify-phases' syntax.
...
* gnu/packages/gnuzilla.scm (nss)[arguments]: Use 'modify-phases'.
2017-03-13 18:21:22 +01:00
7a4dea524b
gnu: manaplus: Update to 1.7.3.4.
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* gnu/packages/games.scm (manaplus): Update to 1.7.3.4.
2017-03-13 18:21:10 +03:00
846344d053
gnu: git-modes: Update to 1.2.4.
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* gnu/packages/emacs.scm (git-modes): Update to 1.2.4.
2017-03-13 18:21:10 +03:00
2617050b3b
gnu: magit: Update to 2.10.3.
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* gnu/packages/emacs.scm (magit): Update to 2.10.3.
2017-03-13 18:21:10 +03:00
0216137237
gnu: guile-next: Update to 2.1.8.
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* gnu/packages/guile.scm (guile-next): Update to 2.1.8.
2017-03-13 12:22:38 +01:00
3288e647e3
gnu: r-hexbin: Update to 1.27.1-1.
...
The package tarball was updated in place, resulting in a change in the hash
value. We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
2017-03-13 10:34:00 +01:00
8f7ea70913
gnu: guile-next: Increase max-silent-time.
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* gnu/packages/guile.scm (guile-next)[properties]: Add 'max-silent-time'.
2017-03-13 10:30:33 +01:00
59bb178cce
gnu: linux-libre@4.4: Update to 4.4.53.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.53.
2017-03-13 00:56:58 -04:00
7bc57e760c
gnu: linux-libre@4.9: Update to 4.9.14.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.14.
2017-03-13 00:56:58 -04:00
49a8c92cbe
gnu: linux-libre: Update to 4.10.2.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.2.
(%linux-libre-hash): Update hash.
2017-03-13 00:56:58 -04:00
108f69c448
gnu: ecl: Update to 16.1.3.
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* gnu/packages/lisp.scm (ecl): Update to 16.1.3.
[arguments]: Use a different method to set the binary used for tests.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-12 23:47:40 -04:00
be81133a13
gnu: libical: Fix substitution of path to time zone database.
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Fixes <https://bugs.gnu.org/26039 >.
This is a followup to commit 2b193389d2
2017-03-12 20:45:46 -04:00
3ffaec136f
gnu: Add a tzdata variant for testing purposes.
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* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
2017-03-12 20:45:46 -04:00
3f06f43058
gnu: irssi: Update to 1.0.2.
...
* gnu/packages/irc.scm (irssi): Update to 1.0.2.
2017-03-12 19:58:52 +01:00
e4d34cd0f0
gnu: python@3.5: Fix getentropy() calls on kernels < 3.17.
...
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
2017-03-12 18:40:56 +01:00
343cee8af3
gnu: python@3.5: Update to 3.5.3.
...
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper): Update to 3.5.3.
* gnu/packages/patches/python-fix-tests.patch: Adjust patch context.
* gnu/packages/patches/python-3.5-fix-tests.patch: Likewise. Patch one new test.
2017-03-12 18:40:56 +01:00
998ac26a1e
gnu: tintin++: Use a mirror:// URI.
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* gnu/packages/games.scm (tintin++)[source]: Use mirror://sourceforge.
2017-03-12 17:47:25 +01:00
301f12ec92
gnu: offlineimap: Update to 7.0.14.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.0.14.
2017-03-12 15:44:37 +01:00
0a6bd107e5
gnu: Add le-certs.
...
* gnu/packages/certs.scm (le-certs): New variable.
2017-03-12 03:23:16 -04:00
a5935d1946
gnu: Add r-tsne.
...
* gnu/packages/bioinformatics.scm (r-tsne): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
02eec38ee1
gnu: Add r-ranger.
...
* gnu/packages/statistics.scm (r-ranger): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
d1906e3147
gnu: Add r-tclust.
...
* gnu/packages/statistics.scm (r-tclust): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
5a200a24eb
gnu: Add r-sn.
...
* gnu/packages/statistics.scm (r-sn): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
06085b5bc5
gnu: Add r-numderiv.
...
* gnu/packages/statistics.scm (r-numderiv): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
fe68c8a990
gnu: Add r-mnormt.
...
* gnu/packages/statistics.scm (r-mnormt): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
362ea0dc29
gnu: Add r-rcppprogress.
...
* gnu/packages/statistics.scm (r-rcppprogress): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa890f6185
gnu: Add r-caret.
...
* gnu/packages/statistics.scm (r-caret): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
ab2ec643c3
gnu: Add r-car.
...
* gnu/packages/statistics.scm (r-car): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
a3eb8c8191
gnu: Add r-pbkrtest.
...
* gnu/packages/statistics.scm (r-pbkrtest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
51fc7d8c31
gnu: Add r-lme4.
...
* gnu/packages/statistics.scm (r-lme4): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
c549864d90
gnu: Add r-nloptr.
...
* gnu/packages/statistics.scm (r-nloptr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
49dc1fa5cb
gnu: Add r-quantreg.
...
* gnu/packages/statistics.scm (r-quantreg): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
545d0789fc
gnu: Add r-matrixmodels.
...
* gnu/packages/statistics.scm (r-matrixmodels): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa84100011
gnu: Add r-modelmetrics.
...
* gnu/packages/statistics.scm (r-modelmetrics): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
21cfad44c1
gnu: Add r-rcppeigen.
...
* gnu/packages/statistics.scm (r-rcppeigen): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
0392f82fd5
gnu: Add r-minqa.
...
* gnu/packages/statistics.scm (r-minqa): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:05 +10:00
5a717a95b3
gnu: wine: Update to 2.3.
...
* gnu/packages/wine.scm (wine): Update to 2.3.
2017-03-12 00:00:25 +01:00
4bff300b53
gnu: Add phonon-backend-gstreamer.
...
* gnu/packages/kde-frameworks.scm (phonon-backend-gstreamer): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
5578c2987e
gnu: phonon: Install Qt extensions.
...
* gnu/packages/kde-frameworks.scm (phonon)[arguments]: Add
-DPHONON-INSTALL_QT_EXTENSIONS_INTO_SYSTEM_QT configure flag, and patch the
installation directory.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
612af7ff66
gnu: re2: Set CXX for cross-compilation.
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* gnu/packages/regex.scm (re2)[arguments]: Specify CXX in #:make-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
e7b9dac7b1
gnu: cuirass: Update to 0.0.1 revision 5.
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* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 22:23:28 +01:00
c4b15cb54f
gnu: imagemagick: Update to 6.9.7-10.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-10.
2017-03-11 12:35:57 -05:00
a15638034e
gnu: Add ghc-unexceptionalio.
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* gnu/packages/haskell.scm (ghc-unexceptionalio): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 12:43:36 +01:00
55fa53491b
gnu: Add emacs-memoize.
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* gnu/packages/emacs.scm (emacs-memoize): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11 12:43:36 +01:00
c84c8f66f5
gnu: wget: Fix CVE-2017-6508.
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* gnu/packages/patches/wget-CVE-2017-6508.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/wget.scm (wget)[source]: Use it.
2017-03-10 22:36:58 -05:00
e08ad76658
gnu: Add r-fnn.
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* gnu/packages/statistics.scm (r-fnn): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:55:28 +10:00
7711f61450
gnu: Add r-pbapply.
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* gnu/packages/statistics.scm (r-pbapply): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:51:50 +10:00
d4cebae286
gnu: Add r-vgam.
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* gnu/packages/statistics.scm (r-vgam): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:47:02 +10:00
fbf45d6ea7
gnu: vsearch: Update to 2.4.2.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
2017-03-11 11:37:15 +10:00
036cd0cb8b
gnu: Add r-ape.
...
* gnu/packages/bioinformatics.scm (r-ape): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
a409e8b52f
gnu: Add r-fpc.
...
* gnu/packages/statistics.scm (r-fpc): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
5da4f84f1f
gnu: Add r-trimcluster.
...
* gnu/packages/statistics.scm (r-trimcluster): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
c0cab38e03
gnu: Add r-robustbase.
...
* gnu/packages/statistics.scm (r-robustbase): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
cda0720805
gnu: Add r-deoptimr.
...
* gnu/packages/statistics.scm (r-deoptimr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
c962816dc4
gnu: Add r-prabclus.
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* gnu/packages/statistics.scm (r-prabclus): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
5638e15475
gnu: Add r-mclust.
...
* gnu/packages/statistics.scm (r-mclust): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
a1f2668e6c
gnu: Add r-flexmix.
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* gnu/packages/statistics.scm (r-flexmix): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
1721fb4fe7
gnu: Add r-modeltools.
...
* gnu/packages/statistics.scm (r-modeltools): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
d5eca4f9ac
gnu: Add r-diptest.
...
* gnu/packages/statistics.scm (r-diptest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
a2fa9c3d1b
gnu: Add obnam.
...
* gnu/packages/backup.scm (obnam): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-10 22:06:25 +01:00
b500dc2e83
gnu: icestorm: Replace reference in icebox_vlog.
...
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase
"fix-usr-local" to replace reference to /usr/local/share.
2017-03-10 21:15:39 +01:00
97bede8466
gnu: dub: Update to 1.2.2.
...
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
2017-03-10 19:39:52 +01:00
79f09fa239
gnu: hmmer: Build reproducibly.
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* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10 20:31:30 +10:00
5ded35d89d
gnu: Add sambamba.
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* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New
variables.
2017-03-10 10:13:59 +01:00
fc1428d295
gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].
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* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
2017-03-10 01:44:39 -05:00
5c95465e27
gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.
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* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet'
and '--with-lmdb'.
[inputs]: Add 'lmdb' and 'kyotocabinet'.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 20:36:44 -05:00
469609a987
gnu: neomutt: Update to 20170306.
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* gnu/packages/mail.scm (neomutt): Update to 20170306.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 20:36:39 -05:00
91c8724165
Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'."
...
'kyotocabinet' is more current than tokyocabinet in development
and supported in neomutt aswell.
This reverts commit ef91e2b964
2017-03-09 20:36:32 -05:00
d4f6f78ea3
gnu: hiawatha: Adjust description.
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* gnu/packages/web.scm (hiawatha)[description]: Adjust it.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 19:42:16 -05:00
f2a7ce5033
gnu: Add font-tamzen.
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* gnu/packages/fonts.scm (font-tamzen): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 19:23:07 -05:00
ff797172b0
gnu: btrfs-progs/static: Correct description.
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* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct
name of the btrfs-progs package and @command{} mark-up.
2017-03-09 23:55:57 +01:00
5595d4c1fd
gnu: btrfs-progs: Update to 4.10.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
2017-03-09 23:55:54 +01:00
ab84c13ff0
gnu: ibus-anthy: Update to 1.5.9.
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* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
2017-03-09 22:49:38 +01:00
2704f5be09
gnu: ibus: Update to 1.5.15.
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* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
2017-03-09 22:49:38 +01:00
1b34a47da0
gnu: pius: Update to 2.2.4.
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* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
2017-03-09 22:49:37 +01:00
50b398298f
gnu: youtube-dl: Update to 2017.03.07.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
2017-03-09 22:49:37 +01:00
d9e94c6170
gnu: graphicsmagick: Build with 16 bit quantum depth.
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Octave requires graphicsmagick to be built with 16 bit quantum depth.
* gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add
"--with-quantum-depth=16" and "--enable-quantum-library-names"
to #:configure-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:12 -05:00
9f91340166
gnu: octave: Build with curl and graphicsmagick.
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* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:09 -05:00
baa467762c
gnu: glib: Avoid failing test caused by changes in the time zone database.
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* gnu/packages/glib.scm (glib)[arguments]: Skip a failing test in
'disable-failing-tests' phase.
2017-03-09 15:20:01 -05:00
24c72670d9
gnu: glib: Update to 2.50.3.
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* gnu/packages/glib.scm (glib): Update to 2.50.3.
2017-03-09 15:19:57 -05:00
1f28b3195a
gnu: xf86-input-libinput: Update to 0.25.0.
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* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
2017-03-09 18:13:22 +01:00
b6b2ca5d19
gnu: Add python2-larch.
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* gnu/packages/python.scm (python2-larch): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 17:11:03 +01:00
c220f0b474
gnu: Add python2-tracing.
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* gnu/packages/python.scm (python2-tracing): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 17:09:17 +01:00
77e9941160
gnu: Add python2-ttystatus.
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* gnu/packages/python.scm (python2-ttystatus): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 16:53:23 +01:00
33e9490ca1
gnu: Add python2-cliapp.
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* gnu/packages/python.scm (python2-cliapp): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 16:52:53 +01:00
6741676911
gnu: python-numpy-documentation: Use full git commit hash in submodule.
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* gnu/packages/python.scm (python-numpy-documentation,
python2-numpy-documentation)[native-inputs]: Update hash of
SCIPY-SPHINX-THEME. Fix indentation of a line.
2017-03-09 16:39:09 +01:00
63d62305c3
gnu: Remove obsolete numpy comment.
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* gnu/packages/python.scm: Remove comment.
2017-03-09 16:39:08 +01:00
ed6a21b45f
gnu: inetutils: Disable parallel tests.
...
* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
2017-03-09 16:39:08 +01:00
ce79279d34
gnu: python-pandas: Really fix build on 32bit.
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* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion
with same-named test.
2017-03-09 16:39:08 +01:00
e90e0fad1b
Merge branch 'master' into core-updates
2017-03-09 16:35:41 +01:00
0da4f3659a
gnu: Add rsnapshot.
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* gnu/packages/backup.scm (rsnapshot): New variable.
2017-03-09 12:29:23 +01:00
7b1866d783
gnu: python-fake-factory: Add back missing patch file.
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This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae
2017-03-09 06:08:18 -05:00
483188b76e
gnu: inetutils: Set the $localstatedir.
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This is a followup to commit 6f5d28f9d0
2017-03-09 05:00:29 -05:00
1fa8a51ecc
gnu: icecat: Add fixes from upstream Firefox ESR 45.8.0.
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Includes fixes for CVE-2017-5398, CVE-2017-5400, CVE-2017-5401, CVE-2017-5402,
CVE-2017-5404, CVE-2017-5405, CVE-2017-5407, CVE-2017-5408, CVE-2017-5409, and
CVE-2017-5410.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr45 repository.
2017-03-09 03:58:29 -05:00
c9b631aef4
gnu: icecat: Update to 45.7.0-gnu1.
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* gnu/packages/gnuzilla.scm (icecat): Update to 45.7.0-gnu1. Remove patches
included in 45.7.0.
2017-03-09 03:58:27 -05:00
f2ac937924
gnu: r: Remove obsolete configure flags.
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* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09 07:38:24 +01:00
f7db12022c
gnu: r: Update to 3.3.3.
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* gnu/packages/statistics.scm (r): Update to 3.3.3.
2017-03-09 07:38:24 +01:00
8ea0700d23
gnu: tzdata: Update to 2017a.
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* gnu/packages/base.scm (tzdata): Update to 2017a.
2017-03-08 18:08:19 -05:00
c49840f8d4
gnu: Add lensfun.
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* gnu/packages/photo.scm (lensfun): New variable.
2017-03-08 23:49:24 +01:00
64f34aefe7
gnu: Add guile2.2-haunt.
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* gnu/packages/guile.scm (guile2.2-haunt): New variable.
2017-03-08 23:42:53 +01:00
517fce6327
gnu: Add guile2.2-reader.
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* gnu/packages/guile.scm (guile2.2-reader): New variable.
2017-03-08 23:42:53 +01:00
77aa0887e1
gnu: guile-reader: Update to 0.6.2.
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* gnu/packages/guile.scm (guile-reader): Update to 0.6.2.
[arguments]: Remove.
2017-03-08 23:42:53 +01:00
beb1e8067d
gnu: Remove unneeded imports.
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* gnu/packages/backup.scm: Remove unneeded (guix build utils) import.
* gnu/packages/finance.scm: Likewise.
2017-03-08 23:42:52 +01:00
6f5d28f9d0
gnu: inetutils: Enable tests.
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* gnu/packages/admin.scm (inetutils)[arguments]: Remove '#:tests? #f'
and #:configure-flags.
[native-inputs]: Add net-tools.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-08 13:11:59 -05:00
b03ee02f0d
gnu: python-pandas: Fix build on 32-bit.
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* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
2017-03-08 18:04:23 +01:00
ce7911ddae
gnu: Add python-faker.
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* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
2017-03-08 18:00:43 +01:00
1eaaea41e5
gnu: python-matplotlib-documentation: Fix build.
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* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]:
Add python-mock and graphviz.
[arguments]: Use separate build and install phases; correctly set latex paper size.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-08 17:39:00 +01:00
9c974c9366
gnu: iperf: Update to 3.1.7.
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* gnu/packages/networking.scm (iperf): Update to 3.1.7.
2017-03-08 17:37:51 +01:00
3a38cf2dfd
gnu: libinput: Update to 1.6.3.
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* gnu/packages/freedesktop.scm (libinput, libinput-minimal): Update to 1.6.3.
2017-03-08 17:18:11 +01:00
Efraim Flashner