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22288 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 659fef8ddb
gnu: libfilezilla: Update to 0.12.0. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.0.
 2018-02-19 05:57:18 +01:00
Tobias Geerinckx-Rice eae7ece1af
gnu: erlang: Use HTTPS home page. 
* gnu/packages/erlang.scm (erlang)[home-page]: Use HTTPS with the new
canonical domain.
 2018-02-19 05:57:17 +01:00
okapi 2922852e86
gnu: Add gzdoom. 
* gnu/packages/games.scm (gzdoom): New variable.
* gnu/packages/patches/gzdoom-search-in-installed-share.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-19 00:33:34 +01:00
okapi 9073c8758c
gnu: Add fluid-3. 
* gnu/packages/audio.scm (fluid-3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-19 00:33:34 +01:00
Ludovic Courtès 5912791655
gnu: guix: Update snapshot to bdf0c64. 
* gnu/packages/package-management.scm (guix): Update to bdf0c64.
[arguments] <copy-bootstrap-guile>: Move after 'check' phase.  Rewrite
to use "guix download" and to intern only one or two tarballs.
[inputs]: Remove "boot-guile/*".  Add "boot-guile" and, optionally,
"boot-guile/i686".
 2018-02-19 00:33:34 +01:00
Marius Bakke 418cbf6e22
gnu: qt.scm: Remove unneeded import. 
* gnu/packages/qt.scm (define-module): Don't import (gnu packages base).
 2018-02-18 20:44:19 +01:00
Marius Bakke 5ce3f93bc5
gnu: Add xorgproto. 
* gnu/packages/xorg.scm (xorgproto): New public variable.
 2018-02-18 20:23:45 +01:00
Marius Bakke 1ac1872161
gnu: lvm2: Remove obsolete phase. 
* gnu/packages/linux.scm (lvm2)[arguments]: Remove MAKE-OBJECTS-WRITABLE-PHASE.
 2018-02-18 20:13:42 +01:00
Marius Bakke c06bf6a3e2
gnu: argon2: Update to 20171227. 
* gnu/packages/password-utils.scm (argon2): Update to 20171227.
[arguments]: Add OPTTEST=1 to #:make-flags to prevent "-march=native".  Remove
custom install phase.  Add 'patch-Makefile' phase.
[license]: Add ASL2.0.
 2018-02-18 20:13:42 +01:00
Hartmut Goebel 102fc5bc29
gnu: Add qqc2-desktop-style. 
* gnu/packages/kde-frameworks.scm (qqc2-desktop-style): New
  variable.
 2018-02-18 19:21:41 +01:00
Hartmut Goebel ac5f3988c4
gnu: knotifications: Add optional input "qtspeech". 
* gnu/pacakges/kde-frameworks.scm (knotifications)[inputs]: Add
  qtspeech.
 2018-02-18 19:21:40 +01:00
Hartmut Goebel 96e622f15d
gnu: ktextwidgets: Add optional input "qtspeech". 
* gnu/pacakges/kde-frameworks.scm (ktextwidgets)[inputs]: Add
  qtspeech.
 2018-02-18 19:21:40 +01:00
Hartmut Goebel bb8d1b2a72
gnu: qca: Use mirror://kde scheme for source-url. 
* gnu/packages/kde.scm (qca)[source]: Use mirror://kde scheme.
 2018-02-18 19:21:39 +01:00
Hartmut Goebel 343bffbd79
gnu: snorenotify: Use mirror://kde scheme for source-url. 
* gnu/packages/kde.scm (snorenotify)[source]: Use mirror://kde scheme.
 2018-02-18 19:21:38 +01:00
Hartmut Goebel 352e14d87c
gnu: libkomparediff2: Use mirror://kde scheme for source-url. 
* gnu/packages/kde.scm (libkomparediff2)[source]: Use mirror://kde
  scheme.
 2018-02-18 19:21:38 +01:00
Hartmut Goebel 3600001693
gnu: libkomparediff2: Update to 17.12.1 
* gnu/packages/kde.scm(libkomparediff2): Update to 17.12.1.
  [source] Switch to KDE mirror, use mirror://kde scheme.
 2018-02-18 19:21:37 +01:00
Hartmut Goebel c8c06bf5b0
gnu: libksysguard: Update to 5.11.5. 
* gnu/packages/kde.scm (libksysguard: Update to 5.11.5).
 2018-02-18 19:21:36 +01:00
Hartmut Goebel bd533cbb7f
gnu: kpmcore: Update to 3.3.0 
* gnu/packages/kde-frameworks.scm (kpmcore): Update to 3.3.0.
 2018-02-18 19:21:36 +01:00
Hartmut Goebel 431ff8bea3
gnu: kde-frameworks: Update to 5.42.0 resp. 5.42.1 
Beside simple updating:
- Change all todo-comments for test-cases into "fixme" comments to make them
  easier to find.
- breeze-icons: Blacklist a test failing at build.kde.org, too.
- extra-cmake-modules: Patch out a vanised test-case.
- kfilemetadata: Can now run the test-suite uninstalled. Blacklist a failing
  test-case.
- kimageformats: No longer symlink plugins into ./bin for testing.
- ktexteditor: Remove now unused patch.
- plasma-framework: Add input kirigami
- sonnet: For testing set QT_QPA_PLATFORM=offscreen.

* gnu/packages/kde-frameworks.scm (attica, baloo, bluez-qt, kactivities,
  kactivities-stats, kapidox, karchive, kauth, kbookmarks, kcmutils, kcodecs,
  kcompletion, kconfig, kconfigwidgets, kcoreaddons, kcrash, kdbusaddons,
  kde-frameworkintegration, kdeclarative, kded, kdelibs4support,
  kdesignerplugin, kdesu, kdewebkit, kdnssd, kdoctools, kemoticons,
  kglobalaccel, kguiaddons, khtml, ki18n, kiconthemes, kidletime, kinit, kio,
  kirigami, kitemmodels, kitemviews, kjobwidgets, kjs, kjsembed, kmediaplayer,
  knewstuff, knotifications, knotifyconfig, kpackage, kparts, kpeople,
  kplotting, kpty, kross, krunner, kservice, ksyntaxhighlighting,
  ktextwidgets, kunitconversion, kwallet, kwayland, kwindowsystem, kxmlgui,
  kxmlrpcclient, modemmanager-qt, networkmanager-qt, oxygen-icons,
  prison, solid, threadweaver): Update to 5.42.0.
  (kwidgetsaddons): Update to 5.42.1.
  (breeze-icons): Update to 5.42.0. [#:phases]<disable-failing-test> New
  phase.
  (extra-cmake-modules): Update to 5.42.0.
  [#:phases]<post-5.42.0-release-fix>: New phase.
  (kfilemetadata): Update to 5.42.0. [#:phases]: No longer move check behind
  install. [#:phases]<check-setup> Remove. [#:phase]<disable-failing-test> New
  phase.
  (kimageformats): Update to 5.42.0. [#:phases]<check-setup>: No longer
  symlink plugins into ./bin.
  (ktesteditor)[source]: Remove patch.
  (plasma-framework)[inputs]: Add  kirigami
  (sonnet): Update to 5.42.0. [#:phases]<check-setup> New phase.
* gnu/packages/patches/ktexteditor-5.39.0-autotests-dependencies.patch:
  Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-02-18 19:21:35 +01:00
Hartmut Goebel 042f7c2636
gnu: qtserialport: Use the store paths for dynamically loaded libs. 
Transfer the applicable NixOS patches for qtserialport as of 2018-01-19:

- src/serialport/qtudev_p.h: Transferred: Use hard-coded path to libudev.

* gnu/packages/qt.scm(qtserialport)[#:phases]<patch-dlopen-paths>:
  New phase.
 2018-02-18 18:39:19 +01:00
Hartmut Goebel 64f390a409
gnu: qtbase: Use the store paths for other packages and dynamically loaded libs. 
Transfer the applicable NixOS patches as of 2018-01-19:

- Not adopted: We don't change the .cmake.in and .prf, but use config
  mechanisms provided by th Qt build system.

- src/corelib/tools/qtimezoneprivate_tz.cpp: Adopted patch: Use $TZDIR to
  search for time-zone data. Thus avoid depending on package "tzdata", which
  often introduces changes with near-immediate effects, so it's important to
  be able to update it fast.

- src/corelib/kernel/qcoreapplication.cpp: Not adopted: NixOS adds plugin
  paths derived from PATH. We do not need this, since we already have
  native-search-path QT_PLUGIN_PATH.

- src/network/kernel/qdnslookup_unix.cpp,
  src/network/kernel/qhostinfo_unix.cpp: Transferred: Use hard-coded path to
  libresolv.

- src/network/ssl/qsslcontext_openssl.cpp: Not adopted: NixOS changes a
  conditional compilation for Qt 5.9 (but leaves it unchanged for Qt 5.10) to
  fix compilation with libressl.  But Qt does not support libressl anway, see
  config.tests/openssl/openssl.cpp in qtbase 5.9.4.

- src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp:
  Transferred: Use hard-coded path to libx11.

- src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp:
  Transferred: Use hard-coded path to mess's libGL, no need for a fall-back.

- src/plugins/platforms/xcb/qxcbcursor.cpp: Transferred: Use hard-coded path
  to Xcursor.

- src/plugins/platformthemes/gtk3/main.cpp: Not adopted: NixOS changes
  $XDG_DATA_DIRS and $GIO_EXTRA_MODULES in the code. We already have a
  search-path-specification for this.

- src/testlib/qtestassert.h: Decided not to adopt this for guix.

* gnu/packages/patches/qtbase-use-TZDIR.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qt.scm (qtbase): Add comment. [source]: Use new patch.
  [arguments]<#:phases>'patch-paths': New phase.
 2018-02-18 18:39:18 +01:00
Alex Vong bdf0c644da
gnu: python2-django-mailman3: Update to 1.1.0. 
* gnu/packages/python.scm (python2-django-mailman3): Update to 1.1.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-18 17:37:51 +01:00
Alex Vong c115a1c8d7
gnu: python-mailmanclient: Update to 3.1.1. 
* gnu/packages/python.scm (python-mailmanclient, python2-mailmanclient):
Update to 3.1.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-18 17:36:52 +01:00
Alex Vong 98b90194d3
gnu: haskell: Use HTTPS where possible. 
* gnu/packages/haskell.scm (cl-yale-haskell)[source, home-page]: Use HTTPS.
(ghc-libxml)[source, home-page]: Likewise.
(ghc-haddock-library)[home-page]: Likewise.
(ghc-haddock-api)[home-page]: Likewise.
(ghc-haddock)[home-page]: Likewise.
(ghc-simple-reflect)[home-page]: Likewise.
(ghc-alex)[home-page]: Likewise.
(ghc-concatenative)[description]: Likewise.
(ghc-openglraw)[home-page]: Likewise.
(ghc-glut)[home-page]: Likewise.
(ghc-gluraw)[home-page]: Likewise.
(ghc-opengl)[home-page]: Likewise.
(cabal-install)[home-page]: Likewise.
(ghc-mtl)[description]: Likewise.
(ghc-temporary)[home-page]: Likewise.
(ghc-temporary-rc)[home-page]: Likewise.
(ghc-fgl)[home-page]: Likewise.
(ghc-blaze-markup)[home-page]: Likewise.
(ghc-doctest)[description]: Likewise.
(ghc-scientific)[description]: Likewise.
(ghc-regex-pcre-builtin)[description]: Likewise.
(ghc-diff)[home-page]: Likewise.
(ghc-highlighting-kate)[description]: Likewise.
(ghc-hslua)[description]: Likewise.
(ghc-pandoc)[home-page]: Likewise.
(ghc-rfc5051)[home-page]: Likewise.
(ghc-data-ordlist)[home-page]: Likewise.
(ghc-regex-compat-tdfa)[home-page]: Likewise.
(ghc-sandi)[home-page]: Likewise.
(ghc-bytestring-handle)[home-page]: Likewise.
(ghc-tar)[home-page]: Likewise.
(ghc-transformers)[home-page]: Likewise.
(ghc-patience)[home-page]: Likewise.
(ghc-monads-tf)[home-page]: Likewise.
(ghc-colour)[home-page]: Likewise.
(ghc-directory)[home-page]: Likewise.
(ghc-process)[home-page]: Likewise.
(ghc-wl-pprint-text)[home-page]: Likewise.
(ghc-fgl-arbitrary)[home-page]: Likewise.
(ghc-graphviz)[description]: Likewise.
(ghc-array)[home-page]: Likewise.
(ghc-storable-complex)[source]: Likewise.
(ghc-hmatrix)[source]: Likewise.
(ghc-hmatrix-gsl)[source]: Likewise.
(ghc-hmatrix-special)[source]: Likewise.
(ghc-hmatrix-gsl-stats)[source]: Likewise.
(ghc-easyplot)[source, home-page]: Likewise.
(ghc-hashtables)[source]: Likewise.
(ghc-data-accessor)[home-page]: Likewise.
(ghc-data-accessor-transformers)[home-page]: Likewise.
(ghc-gnuplot)[home-page]: Likewise.
(ghc-terminal-size)[home-page]: Likewise.
(ghc-language-c)[home-page]: Likewise.
(ghc-hslogger)[home-page]: Likewise.
(ghc-json)[home-page]: Likewise.
(ghc-hex)[home-page]: Likewise.
(ghc-psqueues)[description]: Likewise.
(ghc-uuid-types)[description]: Likewise.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-02-18 17:35:20 +01:00
Arun Isaac d72f59a4cf
gnu: swaks: Use HTTPS home page and source URIs. 
* gnu/packages/mail.scm (swaks)[source]: Use HTTPS URI.
[home-page]: Use HTTPS URI.
[arguments]: Replace system* with invoke.
 2018-02-18 18:16:49 +05:30
Arun Isaac f25e1e2448
gnu: Add python2-mapnik. 
* gnu/packages/geo.scm (python2-mapnik): New variable.
 2018-02-18 17:30:20 +05:30
Arun Isaac f2b005f630
gnu: Add mapnik. 
* gnu/packages/geo.scm (mapnik): New variable.
 2018-02-18 17:30:12 +05:30
Ricardo Wurmus c46e654f39
gnu: Add emacs-polymode. 
* gnu/packages/emacs.scm (emacs-polymode): New variable.
 2018-02-18 12:31:03 +01:00
Ricardo Wurmus f6d259b4d9
gnu: emacs-slack: Update to 0-2.02ee1d73. 
* gnu/packages/emacs.scm (emacs-slack): Update to 0-2.02ee1d73.
 2018-02-18 12:28:56 +01:00
Efraim Flashner c9b7ed7de9
gnu: c-ares: Update to 1.14.0. 
* gnu/packages/adns.scm (c-ares): Update to 1.14.0.
[license]: Use https.
 2018-02-18 13:05:07 +02:00
Mark H Weaver 629daea981
gnu: linux-libre: Update to 4.15.4. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.4.
(%linux-libre-hash): Update hash.
 2018-02-17 23:57:21 -05:00
Mark H Weaver 4a9ea9750d
gnu: linux-libre@4.14: Update to 4.14.20. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.20.
(%linux-libre-4.14-hash): Update hash.
 2018-02-17 23:55:40 -05:00
Mark H Weaver 7b4a850c23
gnu: linux-libre@4.9: Update to 4.9.82. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.82.
 2018-02-17 23:55:02 -05:00
Mark H Weaver 1afd125beb
gnu: linux-libre@4.4: Update to 4.4.116. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.116.
 2018-02-17 23:54:27 -05:00
Danny Milosavljevic fdd400d82e
gnu: make-linux-libre: Use invoke. 
* gnu/packages/linux.scm (make-linux-libre): Use invoke.
 2018-02-17 23:48:33 -05:00
Chris Marusich 67f0c4228b
gnu: Update gnu-standards to 2018-02-18. 
* gnu/packages/gnu-doc.scm (gnu-standards) <version>: Update to 2018-02-18.
  (gnu-standards) <origin>: While we're here, use "gnu-standards-src" as the
  file-name, rather than the default, which is "cvs-checkout".
 2018-02-18 03:19:26 +01:00
Ludovic Courtès 3f3c0ab434
gnu: mailutils: Fix uninitialized memory bug. 
This was causing segfaults in the MH test suite when building with
glibc 2.26 on x86_64.

* gnu/packages/patches/mailutils-uninitialized-memory.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (mailutils)[source](patches, snippet): New
fields.
[native-inputs]: New field.
 2018-02-18 00:48:17 +01:00
Ludovic Courtès d65930708f
gnu: gcc@4.9: Fix libsanitizer compilation with glibc 2.26. 
* gnu/packages/patches/gcc-4.9-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.9)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-02-18 00:48:16 +01:00
Ludovic Courtès a9d4a9ad33
gnu: gvpe: Fix compilation against glibc 2.26. 
* gnu/packages/vpn.scm (gvpe)[source](modules, snippet): New fields.
 2018-02-18 00:48:16 +01:00
Ludovic Courtès bfb06e580e
gnu: shepherd: Add dependency on guile-readline. 
* gnu/packages/admin.scm (shepherd)[inputs]: Add GUILE-READLINE.
 2018-02-18 00:48:16 +01:00
Ricardo Wurmus ff9d1a2f0c
Merge branch 'master' into core-updates 2018-02-18 00:39:25 +01:00
Ricardo Wurmus a01d926f9d
gnu: geda-gaf: Disable two broken tests. 
* gnu/packages/engineering.scm (geda-gaf)[arguments]: Disable two failing
tests.
 2018-02-18 00:30:47 +01:00
Ricardo Wurmus 5f78ce490e
gnu: Add emacs-nov-el. 
* gnu/packages/emacs.scm (emacs-nov-el): New variable.
 2018-02-18 00:30:47 +01:00
Ricardo Wurmus 8d89921474
gnu: Add emacs-esxml. 
* gnu/packages/emacs.scm (emacs-esxml): New variable.
 2018-02-18 00:30:47 +01:00
Marius Bakke 6f6db0269f
gnu: python-hacking: Update to 1.0.0. 
* gnu/packages/openstack.scm (python-hacking): Update to 1.0.0.
[propagated-inputs]: Change PYTHON-FLAKE8 to PYTHON-FLAKE8-2.5.
* gnu/packages/python.scm (python-flake8-2.5, python2-flake8-2.5): New public
variables.
 2018-02-17 21:45:31 +01:00
Marius Bakke ca6197dd65
gnu: python-defusedxml: Update to 0.5.0. 
* gnu/packages/xml.scm (python-defusedxml): Update to 0.5.0.
 2018-02-17 20:59:11 +01:00
Marius Bakke 26176bee23
gnu: python-waitress: Update to 1.1.0. 
* gnu/packages/patches/python-waitress-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-waitress): Update to 1.1.0.
[source](patches): New field.
 2018-02-17 20:49:39 +01:00
Efraim Flashner a39aa68394
gnu: libffcall: Update to 2.1. 
* gnu/packages/libffcall.scm (libffcall): Update to 2.1.
 2018-02-17 21:20:31 +02:00
Marius Bakke 3ce4e265dd
gnu: btrfs-progs: Fix bash completions. 
This is a follow-up to commit 9a1c4a981b.  Bash
completions must have the same name as the executable.

* gnu/packages/linux.scm (btrfs-progs)[arguments]: Rename "btrfs-completion"
script to "btrfs".
 2018-02-17 16:15:43 +01:00
Marius Bakke 3971dcbf0e
gnu: zathura: Don't propagate girara in dependent packages. 
* gnu/packages/pdf.scm (zathura-cb, zathura-ps, zathura-djvu,
zathura-pdf-mupdf, zathura-pdf-poppler)[propagated-inputs]: Remove GIRARA.
 2018-02-17 16:15:43 +01:00
Marius Bakke 2416665ecb
gnu: zathura, girara: Use the test-only xorg variant for tests. 
* gnu/packages/gtk.scm (girara)[native-inputs]: Replace XORG-SERVER with
XORG-SERVER-1.19.3.
[arguments]: Add #:disallowed-references.
* gnu/packages/pdf.scm (zathura)[native-inputs, arguments]: Likewise.
 2018-02-17 16:15:43 +01:00
Marius Bakke f0eba502a1
gnu: zathura: Increase test timeouts. 
* gnu/packages/pdf.scm (zathura): Export CK_DEFAULT_TIMEOUT before running
tests.
 2018-02-17 16:15:43 +01:00
Marius Bakke 3e6b398a48
gnu: girara: Increase test timeouts. 
Fixes build failures on Hydra.  Reported by Mark H Weaver in
<https://lists.gnu.org/archive/html/guix-devel/2017-12/msg00391.html>.

* gnu/packages/gtk.scm (girara)[arguments]: Set CK_DEFAULT_TIMEOUT before
running tests.
 2018-02-17 16:15:43 +01:00
Ben Woodcroft bb3359ab8e
gnu: ruby-2.4.3: Update rubygems to 2.7.6. 
This fixes the security issues described at
https://www.ruby-lang.org/en/news/2018/02/17/multiple-vulnerabilities-in-
rubygems/

* gnu/packages/patches/ruby-rubygems-276-for-ruby24.patch: New file.
* gnu/packages/ruby.scm (ruby-2.4.3)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-02-18 00:48:50 +10:00
Ricardo Wurmus 1ecbd859a1
gnu: ghc-mtl: Remove ghc-transformers from inputs. 
* gnu/packages/haskell.scm (ghc-mtl)[arguments]: Explain why we need to allow
a newer version of the transformers package.
[inputs]: Remove ghc-transformers.
 2018-02-17 14:02:57 +01:00
Ricardo Wurmus 9729f9756c
gnu: ghc-mtl: Remove ghc-transformers from inputs. 
* gnu/packages/haskell.scm (ghc-mtl)[arguments]: Explain why we need to allow
a newer version of the transformers package.
[inputs]: Remove ghc-transformers.
 2018-02-17 14:01:15 +01:00
Ben Woodcroft 369eee8763
gnu: vsearch: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.1.
 2018-02-17 12:44:29 +10:00
Marius Bakke c8f1a49f0e
gnu: git: Update to 2.16.2. 
* gnu/packages/version-control.scm (git): Update to 2.16.2.
 2018-02-16 22:13:38 +01:00
Marius Bakke 445929e038
gnu: glpk: Update to 4.65. 
* gnu/packages/maths.scm (glpk): Update to 4.65.
 2018-02-16 22:08:03 +01:00
Marius Bakke 294ae4d7f8
gnu: xf86-video-vesa: Update to 2.4.0. 
* gnu/packages/xorg.scm (xf86-video-vesa): Update to 2.4.0.
 2018-02-16 22:02:45 +01:00
Nicolas Goaziou fa7d8ea1a2
gnu: Add colobot. 
* gnu/packages/games.scm (colobot): New variable.
 2018-02-16 20:57:14 +01:00
Kei Kebreau 3d8cbdc40e
gnu: bigloo: Fix source hash. 
Fixes <https://bugs.gnu.org/30436>.

* gnu/packages/scheme.scm (bigloo)[source]: Fix hash.
 2018-02-16 14:42:34 -05:00
Mark H Weaver 150062f190
Merge branch 'master' into core-updates 2018-02-16 13:14:26 -05:00
Marius Bakke 54a93355c2
gnu: ruby-sqlite3: Adjust failing test. 
* gnu/packages/ruby.scm (ruby-sqlite3): Adjust test to work with SQLite 3.21.
 2018-02-16 19:09:03 +01:00
Danny Milosavljevic f6cccefed5
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5. 
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
 2018-02-16 12:41:01 -05:00
David Thompson 6a3cf4e6c7
gnu: tiled: Update to 1.1.2. 
* gnu/packages/game-development.scm (tiled): Update to 1.1.2.
 2018-02-16 10:16:09 -05:00
Rutger Helling c2957cb7ec
gnu: mpv: Update to 0.28.2. 
* gnu/packages/video.scm (mpv): Update to 0.28.2.
 2018-02-16 13:09:22 +01:00
Tobias Geerinckx-Rice 8c078ddec4
gnu: perl-dbd-pg: Update to 3.7.4. 
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.7.4.
 2018-02-16 11:15:02 +01:00
Tobias Geerinckx-Rice 2d1c7a4e89
gnu: ristretto: Update to 0.8.2. 
* gnu/packages/xfce.scm (ristretto): Update to 0.8.2.
 2018-02-16 11:15:01 +01:00
Tobias Geerinckx-Rice 2b33c4d677
gnu: opusfile: Update to 0.10. 
* gnu/packages/xiph.scm (opusfile): Update to 0.10.
 2018-02-16 11:15:01 +01:00
Tobias Geerinckx-Rice 1b0ce451f4
gnu: erlang: Update phase style. 
* gnu/packages/erlang.scm (erlang)[arguments]: Substitute INVOKE for
SYSTEM*, don't use %OUTPUTS, and end phases with #t.
 2018-02-16 11:11:41 +01:00
Tobias Geerinckx-Rice 629c1947ea
gnu: erlang: Update to 20.2.3. 
* gnu/packages/erlang.scm (erlang): Update to 20.2.3.
 2018-02-16 11:11:41 +01:00
Tobias Geerinckx-Rice ce46dfeba5
gnu: gkrellm: Update to 2.3.10. 
* gnu/packages/gkrellm.scm (gkrellm): Update to 2.3.10.
[arguments]: Remove X11_LIBS override.
 2018-02-16 11:11:41 +01:00
Tobias Geerinckx-Rice 48bbe06edf
gnu: gnustep: Update dockapps home pages. 
* gnu/packages/gnustep.scm (wmbattery, wmclock, wmcpuload)[home-pages]:
Use new dockapps.net domain.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice bfe83d568c
gnu: gnustep: Update phase style. 
* gnu/packages/gnustep.scm (windowmaker)[arguments]: Don't use %OUTPUT.
End phases with #t.
(wmbattery, wmclock)[arguments]: Substitute INVOKE for SYSTEM*.  End
phases with #t.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 9a0a4a95f0
gnu: wmcpuload: Update to 1.1.1. 
* gnu/packages/gnustep.scm (wmcpuload): Update to 1.1.1.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 93710d861f
gnu: wmbattery: Update to 2.51. 
* gnu/packages/gnustep.scm (wmbattery): Update to 2.51.
[source]: Remove upstreamed bugfix snippet.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 340978d7b0
gnu: Use HTTPS for supported nongnu.org home pages. 
* gnu/packages/acl.scm (acl)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (dmidecode)[home-page]: Likewise.
* gnu/packages/attr.scm (attr)[home-page]: Likewise.
* gnu/packages/audio.scm (lash)[home-page]: Likewise.
* gnu/packages/avr.scm (avr-libc)[home-page]: Likewise.
* gnu/packages/backup.scm (rdiff-backup, libchop)[home-page]: Likewise.
* gnu/packages/compression.scm (fastjar, lzip, lziprecover, atool)
(lunzip, clzip, lzlib, plzip)[home-page]: Likewise.
* gnu/packages/emacs.scm (geiser, bbdb, m17n-lib, m17n-lib)[home-page]:
Likewise.
* gnu/packages/flashing-tools.scm (avrdude)[home-page]: Likewise.
* gnu/packages/fontutils.scm (libotf)[home-page]: Likewise.
* gnu/packages/game-development.scm (gzochi)[home-page]: Likewise.
* gnu/packages/games.scm (enigma)[home-page]: Likewise.
* gnu/packages/gsasl.scm (libntlm)[home-page]: Likewise.
* gnu/packages/gtk.scm (guile-cairo)[home-page]: Likewise.
* gnu/packages/guile.scm (guile-reader, guile-lib, guile-json)
(guile-redis, g-wrap)[home-page]: Likewise.
* gnu/packages/libunwind.scm (libunwind)[home-page]: Likewise.
* gnu/packages/lout.scm (lout)[home-page]: Likewise.
* gnu/packages/mpd.scm (sonata)[home-page]: Likewise.
* gnu/packages/networking.scm (quagga)[home-page]: Likewise.
* gnu/packages/ratpoison.scm (ratpoison)[home-page]: Likewise.
* gnu/packages/skribilo.scm (skribilo)[home-page]: Likewise.
* gnu/packages/telephony.scm (exosip)[home-page]: Likewise.
* gnu/packages/texinfo.scm (texi2html)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xbindkeys)[home-page]: Likewise.
 2018-02-16 11:11:40 +01:00
Tobias Geerinckx-Rice 10cac630c2
gnu: plzip: Update to 1.7. 
* gnu/packages/compression.scm (plzip): Update to 1.7.
 2018-02-16 11:11:39 +01:00
Tobias Geerinckx-Rice d1c1d835f6
gnu: lzlib: Update to 1.10. 
* gnu/packages/compression.scm (lzlib): Update to 1.10.
 2018-02-16 11:11:39 +01:00
Tobias Geerinckx-Rice d6d1643b2e
gnu: clzip: Update to 1.10. 
* gnu/packages/compression.scm (clzip): Update to 1.10.
 2018-02-16 11:11:39 +01:00
Tobias Geerinckx-Rice 910992e46d
gnu: lziprecover: Update to 1.20. 
* gnu/packages/compression.scm (lziprecover): Update to 1.20.
 2018-02-16 11:11:38 +01:00
Tobias Geerinckx-Rice bf86770950
gnu: pbzip2: Update to 1.1.13. 
* gnu/packages/compression.scm (pbzip2): Update to 1.1.13.
 2018-02-16 11:11:38 +01:00
Tobias Geerinckx-Rice 6f465a5103
gnu: lzop: Use HTTPS home page. 
* gnu/packages/compression.scm (lzop)[home-page]: Use HTTPS.
 2018-02-16 11:11:38 +01:00
Tobias Geerinckx-Rice 89d159fef8
gnu: lzop: Update to 1.04. 
* gnu/packages/compression.scm (lzop): Update to 1.04.
 2018-02-16 11:11:38 +01:00
Ludovic Courtès 469069b6e8
gnu: ldc: Increase 'max-silent-time'. 
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/ldc.scm (ldc-bootstrap)[properties]: New field.
 2018-02-16 11:10:12 +01:00
Leo Famulari 0840678342
gnu: quagga: Update to 1.2.3 [security fixes]. 
See the advisories at
<https://git.savannah.gnu.org/cgit/quagga.git/tree/doc/security?h=quagga-1.2.3>
for more information about the security-related bugs fixed in this
release.

* gnu/packages/networking.scm (quagga): Update to 1.2.3.
 2018-02-15 21:47:07 -05:00
David Thompson 6ca86ed7a3
gnu: python-botocore: Update to 1.8.43. 
* gnu/packages/python.scm (python-botocore): Update to 1.8.43.
 2018-02-15 19:22:15 -05:00
Hartmut Goebel b907b36419
gnu: Add kholidays. 
* gnu/packages/kde.scm(kholidays): New variable.
 2018-02-15 23:26:21 +01:00
Alex Vong f3bbe0291b
gnu: java-fasterxml-jackson-dataformat-xml: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-xml): Update
to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 1f2be88f26
gnu: java-fasterxml-jackson-dataformat-yaml: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-yaml): Update
to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 07207211df
gnu: java-fasterxml-jackson-modules-base-jaxb: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-modules-base-jaxb):
Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 3c1edff5ca
gnu: java-fasterxml-jackson-databind: Update to 2.9.4 [fixes CVE-{2017-17485, 2018-5968}]. 
* gnu/packages/java.scm (java-fasterxml-jackson-databind): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:27 -05:00
Alex Vong 38a0fc384a
gnu: java-fasterxml-jackson-core: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-core): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:26 -05:00
Alex Vong 93dceea45e
gnu: java-fasterxml-jackson-annotations: Update to 2.9.4. 
* gnu/packages/java.scm (java-fasterxml-jackson-annotations): Update to 2.9.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 17:18:26 -05:00
Ben Woodcroft 5ebc8e7f41
gnu: diamond: Update to 0.9.18. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.18.
 2018-02-16 08:13:24 +10:00
Pjotr Prins aabcb6e57c
gnu: python-elasticsearch: Update to 6.1.1. 
* gnu/packages/python-web.scm (python-elasticsearch, python2-elasticsearch):
Update to 6.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-02-15 16:57:12 -05:00
Hartmut Goebel 34581f68c0
gnu: Add bpython. 
* gnu/packages/python.scm (bpython, bpython2): New variables.
 2018-02-15 21:44:07 +01:00
Hartmut Goebel e79a8424ca
gnu: Add python-curtsies. 
* gnu/packages/terminals.scm (python-curtsies, python2-curtsies): New
  variables.
 2018-02-15 21:44:06 +01:00
Hartmut Goebel 573450e60c
gnu: Add python-blessings. 
* gnu/packages/terminals.scm (python-blessings, python2-blessings): New
  variables.
 2018-02-15 21:44:06 +01:00
Hartmut Goebel 46ddcf4a29
gnu: Add python-pyte. 
* gnu/packages/terminals.scm (python-pyte, python2-pyte): New variables.
 2018-02-15 21:44:06 +01:00
Leo Famulari 3026de3fce
gnu: irssi: Update to 1.1.1 [fixes CVE-2018-{7050,7051,7052,7053,7054}]. 
* gnu/packages/irc.scm (irssi): Update to 1.1.1.
 2018-02-15 14:41:26 -05:00
Oleg Pykhalov 5b23829299
gnu: Add epipe. 
* gnu/packages/emacs.scm (epipe): New public variable.
 2018-02-15 20:45:45 +03:00
Danny Milosavljevic a124e4258a
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5. 
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
 2018-02-15 17:27:50 +01:00
Ricardo Wurmus 4aa0a1df2d
gnu: java-jeromq: Update to 0.4.3. 
* gnu/packages/java.scm (java-jeromq): Update to 0.4.3.
[arguments]: Disable DealerSpecTest.
 2018-02-15 17:19:09 +01:00
Ricardo Wurmus 36b39d1618
gnu: java-testng: Update to 6.14.2. 
* gnu/packages/java.scm (java-testng): Update to 6.14.2.
[arguments]: Delete failing tests and those requiring groovy.
[native-inputs]: Add java-mockito-1.
 2018-02-15 17:19:06 +01:00
Ricardo Wurmus 152d30c346
gnu: Add python-loompy. 
* gnu/packages/bioinformatics.scm (python-loompy): New variable.
 2018-02-15 17:19:00 +01:00
Ricardo Wurmus 3082de04c2
gnu: Add r-dropbead. 
* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
 2018-02-15 17:18:54 +01:00
Ricardo Wurmus 05f7296012
gnu: Add r-delayedmatrixstats. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
 2018-02-15 17:18:52 +01:00
Ricardo Wurmus fc162dbaec
gnu: Add python-typing. 
* gnu/packages/python.scm (python-typing, python2-typing): New variables.
 2018-02-15 17:18:50 +01:00
Ricardo Wurmus 130d290e29
gnu: Add python-future-fstrings. 
* gnu/packages/python.scm (python-future-fstrings): New variable.
 2018-02-15 17:18:46 +01:00
Ricardo Wurmus 8b2ad13b19
gnu: Add python-tokenize-rt. 
* gnu/packages/python.scm (python-tokenize-rt): New variable.
 2018-02-15 17:18:43 +01:00
Ricardo Wurmus e035589482
gnu: augeas: Update to 1.10.1. 
* gnu/packages/augeas.scm (augeas): Update to 1.10.1.
 2018-02-15 17:17:19 +01:00
Ludovic Courtès ec0f3d0a5b
gnu: ifdtool: Fix Texinfo markup. 
* gnu/packages/flashing-tools.scm (ifdtool)[description]: Fix Texinfo
markup.
 2018-02-15 16:35:39 +01:00
Danny Milosavljevic 8e60743d8b
gnu: me-cleaner: Update synopsis. 
* gnu/packages/flashing-tools.scm (me-cleaner)[synopsis]: Modify.
 2018-02-15 15:01:39 +01:00
Danny Milosavljevic 0297a160a0
gnu: Add me-cleaner. 
* gnu/packages/flashing-tools.scm (me-cleaner): New variable.
 2018-02-15 12:05:25 +01:00
Danny Milosavljevic 9721c0b6ef
gnu: Add intelmetool. 
* gnu/packages/flashing-tools.scm (intelmetool): New variable.
 2018-02-15 12:05:24 +01:00
Danny Milosavljevic 501e184716
gnu: Add ifdtool. 
* gnu/packages/flashing-tools.scm (ifdtool): New variable.
 2018-02-15 12:05:24 +01:00
Ludovic Courtès 2b870303e7
gnu: cuirass: Update to 4ab2f2c. 
Previous revision had (web server fiberized) installed in the wrong
place, and would thus fail to start.

* gnu/packages/ci.scm (cuirass): Update to 4ab2f2c.
 2018-02-15 10:32:20 +01:00
Pierre Langlois 6ca15c9ef6
gnu: crypto++: Update to 6.0.0. 
* gnu/packages/crypto.scm (crypto++): Update to 6.0.0.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-02-15 10:23:42 +01:00
Ludovic Courtès 9859b5c190
gnu: nss-mdns: Update to 0.12.0. 
* gnu/packages/avahi.scm (nss-mdns): Update to 0.12 + patch.
(nss-mdns-0.10.0): Remove.
* gnu/services/avahi.scm (avahi-service-type): Use NSS-MDNS again.
 2018-02-15 10:16:00 +01:00
Ludovic Courtès d1688e6ad4
gnu: cuirass: Update to 8080c17. 
* gnu/packages/ci.scm (cuirass): Update to 8080c17.
[inputs]: Add GUILE-FIBERS.
[arguments] <wrap-program>: Add Fibers to the search path in the
wrapper.
 2018-02-14 23:44:28 +01:00
Ludovic Courtès 499e499b8e
gnu: guile-sqlite3: Update to 10c13a7. 
* gnu/packages/guile.scm (guile-sqlite3): Update to 10c13a7.
 2018-02-14 23:38:22 +01:00
Julien Lepiller 3bedac5057
gnu: Add cat-avatar-generator. 
* gnu/packages/web.scm (cat-avatar-generator): New variable.
 2018-02-14 23:15:16 +01:00
Tobias Geerinckx-Rice f2ba6fc8bb
gnu: yadifa: Update to 2.3.8. 
* gnu/packages/dns.scm (yadifa): Update to 2.3.8.
 2018-02-14 20:39:53 +01:00
Marius Bakke 1bd08a268a
gnu: strace: Update to 4.21. 
* gnu/packages/linux.scm (strace): Update to 4.21.
[source](uri): Releases are now served from GitHub.
 2018-02-14 20:23:19 +01:00
Marius Bakke 1a46a6d02d
gnu: fio: Update to 3.4. 
* gnu/packages/benchmark.scm (fio): Update to 3.4.
 2018-02-14 20:23:19 +01:00
Oleg Pykhalov ac07b94ab5
gnu: Add emacs-scratch-el. 
* gnu/packages/emacs.scm (emacs-scratch-el): New public variable.
 2018-02-14 15:54:26 +03:00
Mark H Weaver 5fe9ba59ba
gnu: magit: Do not set 'magit-git-executable' to absolute file name. 
Fixes <https://bugs.gnu.org/30434>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/emacs.scm (magit)[arguments]: Do not modify the default value
of 'magit-git-executable'.  Remove "#:modules" and "#:imported-modules".
 2018-02-14 03:48:20 -05:00
Mark H Weaver 84fe44201b
gnu: magit: Do not set 'magit-git-executable' to absolute file name. 
Fixes <https://bugs.gnu.org/30434>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/emacs.scm (magit)[arguments]: Do not modify the default value
of 'magit-git-executable'.  Remove "#:modules" and "#:imported-modules".
 2018-02-14 03:42:07 -05:00
Mark H Weaver 02843215d8
gnu: shepherd: 'herd status' now sorts the result. 
Add a patch by Ludovic Courtès <ludo@gnu.org> from the upstream
shepherd repository to partially fix <https://bugs.gnu.org/30299>.

* gnu/packages/patches/shepherd-herd-status-sorted.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Add patch.
 2018-02-14 03:42:02 -05:00
Mark H Weaver 932c98326d
Merge branch 'master' into core-updates 2018-02-14 03:40:08 -05:00
Rutger Helling 870541d6a7
gnu: mpv: Enable Vulkan support. 
* gnu/packages/video.scm (mpv)[inputs]: Add shaderc and vulkan-icd-loader.
 2018-02-14 08:18:58 +01:00
Rutger Helling 5b69baf0ad
gnu: Add shaderc. 
* gnu/packages/vulkan.scm (shaderc): New variable.
 2018-02-14 08:18:58 +01:00
Mark H Weaver c5971d473d
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2018-02-13 19:53:35 -05:00
Marius Bakke 4af55f7657
gnu: freeipmi: Update to 1.6.1. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.1.
 2018-02-13 23:52:39 +01:00
Danny Milosavljevic a32f9b59ab
system: make-u-boot-package: Install configuration file. 
* gnu/packages/bootloaders.scm (make-u-boot-package): Install configuration
file.
 2018-02-13 23:23:25 +01:00
Marius Bakke b2b2ba40c3
gnu: efivar: Update to 34. 
* gnu/packages/linux.scm (efivar): Update to 34.
[arguments]: Add CC_FOR_BUILD=gcc to #:make-flags.
 2018-02-13 23:02:03 +01:00
Marius Bakke 8b114e5bd9
gnu: feh: Update to 2.23.2. 
* gnu/packages/image-viewers.scm (feh): Update to 2.23.2.
 2018-02-13 23:02:03 +01:00
Ben Woodcroft 119c09c219
gnu: vsearch: Update to 2.7.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.0.
 2018-02-14 07:43:19 +10:00
Efraim Flashner 34a7b7d713
gnu: libdvdnav@4: Remove variable. 
* gnu/packages/video.scm (libdvdnav@4): Remove variable.
 2018-02-13 22:56:51 +02:00
Efraim Flashner 0976ea38b1
gnu: libdvdnav: Update to 6.0.0. 
* gnu/packages/video.scm (libdvdnav): Update to 6.0.0.
 2018-02-13 22:56:50 +02:00
Efraim Flashner 3c9deb0b11
gnu: libdvdread: Update to 6.0.0. 
* gnu/packages/video.scm (libdvdread): Update to 6.0.0.
 2018-02-13 22:56:50 +02:00
Efraim Flashner 975c715a41
gnu: x265: Update to 2.6. 
* gnu/packages/video.scm (x265): Update to 2.6.
 2018-02-13 22:56:48 +02:00
Efraim Flashner 1373ce7ce0
gnu: ffmpeg: Update to 3.4.2. 
* gnu/packages/video.scm (ffmpeg): Update to 3.4.2.
 2018-02-13 22:56:44 +02:00
Leo Famulari 5c4fd60416
gnu: python-icalendar: Update to 4.0.1. 
* gnu/packages/python.scm (python-icalendar): Update to 4.0.1.
 2018-02-13 14:33:22 -05:00
Mark H Weaver 288b8fd5e9
Merge branch 'master' into core-updates 2018-02-13 13:17:15 -05:00
Mark H Weaver acff6aa004
gnu: linux-libre: Update to 4.15.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.3.
(%linux-libre-hash): Update hash.
 2018-02-13 13:08:30 -05:00
Mark H Weaver 146be91dda
gnu: linux-libre@4.14: Update to 4.14.19. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.19.
(%linux-libre-4.14-hash): Update hash.
 2018-02-13 13:07:48 -05:00
Mark H Weaver 47b731b372
gnu: linux-libre@4.9: Update to 4.9.81. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.81.
 2018-02-13 13:06:28 -05:00
Ricardo Wurmus 117c83bdc7
gnu: r-htmltable: Update to 1.11.2. 
* gnu/packages/web.scm (r-htmltable): Update to 1.11.2.
[propagated-inputs]: Remove r-dplyr and r-tidyr.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 7d358f33d8
gnu: r-htmlwidgets: Update to 1.0. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 1ee14481d2
gnu: r-lubridate: Update to 1.7.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.2.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 4ff5fc6fa0
gnu: r-ranger: Update to 0.9.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.9.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus f9ee1741f9
gnu: r-lme4: Update to 1.1-15. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-15.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 45ec40818b
gnu: r-quantreg: Update to 5.35. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.35.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 725673ad6f
gnu: r-rcppeigen: Update to 0.3.3.4.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.4.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus c71cd58240
gnu: r-pbapply: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-4.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus f66a34fcc4
gnu: r-vgam: Update to 1.0-5. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-5.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 09da3d4403
gnu: r-fpc: Update to 2.1-11. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 23fb604725
gnu: r-pcapp: Update to 1.9-73. 
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-73.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus fe394eac82
gnu: r-zoo: Update to 1.8-1. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus b216fdf21f
gnu: r-hmisc: Update to 4.1-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.1-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus c4f148ab0a
gnu: r-tidyr: Update to 0.8.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus be8db0a0ab
gnu: r-viridislite: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.3.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 9604af890d
gnu: r-viridis: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.5.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a46c71924c
gnu: r-matrixstats: Update to 0.53.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.53.1.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus e04b71a83b
gnu: r-mvtnorm: Update to 1.0-7. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-7.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus f7d7dd41f1
gnu: r-r-rsp: Update to 0.42.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.42.0.
[propagated-inputs]: Add r-digest.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 2cd6bb5da4
gnu: r-r-cache: Update to 0.13.0. 
* gnu/packages/statistics.scm (r-r-cache): Update to 0.13.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 48237fde89
gnu: r-bigmemory: Update to 4.5.33. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.33.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a566b3f9e6
gnu: r-synchronicity: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.2.
[propagated-inputs]: Add r-uuid.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 8ff6853c13
gnu: r-irlba: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.2.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a63117c8ae
gnu: r-dt: Update to 0.4. 
* gnu/packages/statistics.scm (r-dt): Update to 0.4.
[propagated-inputs]: Add r-crosstalk.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 1324f85b43
gnu: r-rprojroot: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-2.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus edab1c049b
gnu: r-hms: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.1.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 80f72101b4
gnu: r-withr: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.1.
[propagated-inputs]: Remove r-lattice.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus ecba783c29
gnu: r-git2r: Update to 0.21.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.21.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 9fb6e62ef5
gnu: r-openssl: Update to 1.0. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 78e03a761c
gnu: r-xml2: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.0.
[native-inputs]: Add pkg-config.
[propagated-inputs]: Remove r-bh.
[inputs]: Add zlib.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 2afbaab56c
gnu: r-chron: Update to 2.3-52. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-52.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 172b63e436
gnu: r-dbplyr: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.0.
[propagated-inputs]: Add r-tidyselect.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 59b62f197d
gnu: r-tibble: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.4.2.
[propagated-inputs]: Add r-cli, r-crayon, and r-pillar; remove r-rcpp.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 7387d35228
gnu: r-rlang: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.6.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus c36ac74005
gnu: r-microbenchmark: Update to 1.4-4. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-4.
[propagated-inputs]: Remove r-ggplot2.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus ab3330e174
gnu: r-knitr: Update to 1.19. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.19.
[propagated-inputs]: Remove r-digest.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus d222070ad4
gnu: r-estimability: Update to 1.3. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.3.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 71d2f03be3
gnu: r-digest: Update to 0.6.15. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.15.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus ff1197c86e
gnu: r-rpart: Update to 4.1-12. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-12.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 6aa4be9c3c
gnu: r-mgcv: Update to 1.8-23. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-23.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 4c9264c1b9
gnu: r-mass: Update to 7.3-48. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-48.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 97bf74076c
gnu: r-gprofiler: Update to 0.6.3. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.3.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 169942368f
gnu: r-ensembldb: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.1.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 34d077b8bc
gnu: r-gage: Update to 2.28.2. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.28.2.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus f5f9442703
gnu: r-keggrest: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.18.1.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 26e3e28cc9
gnu: r-seurat: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.0.
[propagated-inputs]: Remove r-ggjoy; add r-rcppeigen and r-ggridges.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 53f0dea9d7
gnu: r-msnbase: Update to 2.4.2. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.2.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus b1f2753627
gnu: r-methylkit: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.1.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 5ef76bc28c
gnu: r-gkmsvm: Update to 0.79.0. 
* gnu/packages/bioinformatics.scm (r-gkmsvm): Update to 0.79.0.
 2018-02-13 16:18:42 +01:00
Ricardo Wurmus 0b24dc95b5
gnu: r-wgcna: Update to 1.62. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.62.
 2018-02-13 16:18:42 +01:00