Commit Graph

37284 Commits (9c2563a80b6f1d8fb8677f5314e6180ea9916aa5)

Author SHA1 Message Date
Ricardo Wurmus a32e3b9078
gnu: gemmlowp-for-tensorflow: Use SSE2.
* gnu/packages/machine-learning.scm (gemmlowp-for-tensorflow)[arguments]: Only
enable SSE2, not SSE4.1 on i686 and x86_64 architectures.
2019-06-18 16:02:53 +02:00
Marius Bakke 71c08ee60b
gnu: python-pytz: Update to 2019.1.
* gnu/packages/time.scm (python-pytz): Update to 2019.1.
2019-06-18 15:48:36 +02:00
Marius Bakke 93253411d6
gnu: python-babel: Update to 2.7.0.
* gnu/packages/python-xyz.scm (python-babel): Update to 2.7.0.
(python2-babel-2.6): New variable.
* gnu/packages/sphinx.scm (python2-sphinx)[propagated-inputs]: Change
PYTHON2-BABEL to PYTHON2-BABEL-2.6.
2019-06-18 15:48:36 +02:00
Marius Bakke 4e24e442f2
gnu: python-freezegun: Update to 0.3.12.
* gnu/packages/check.scm (python-freezegun): Update to 0.3.12.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-COVERAGE.  Add PYTHON-PYTEST.
[arguments]: Use "pytest" instead of "nosetests" for running tests.
2019-06-18 15:32:56 +02:00
Ricardo Wurmus 55dae98f73
gnu: Add python-matplotlib-venn.
* gnu/packages/python-xyz.scm (python-matplotlib-venn): New variable.
2019-06-18 14:50:52 +02:00
Ricardo Wurmus 8b5f756ccb
gnu: python-ipython: Update to 7.5.0
* gnu/packages/python-xyz.scm (python2-ipython): Do not inherit from
python-ipython.
[outputs]: Remove separate "doc" output.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; rename "fix-tests" phase to
"delete-broken-tests" and adjust.
(python-ipython): Update to 7.5.0.
[outputs]: Remove separate "doc" output.
[propagated-inputs]: Add python-backcall and python-jedi; replace
python-prompt-toolkit-1 with python-prompt-toolkit.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; simplify "fix-tests" phase.
[properties]: Remove.
(python-ipython-documentation): New variable.
2019-06-18 14:22:26 +02:00
Ricardo Wurmus 82110deadb
gnu: python-ipykernel: Update to 5.1.1.
* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.1.1.
2019-06-18 14:22:26 +02:00
Ricardo Wurmus 0f3789477a
gnu: python2-ipykernel: Split from python-ipykernel.
* gnu/packages/python-xyz.scm (python2-ipykernel): Define without
package-with-python2.
2019-06-18 14:22:26 +02:00
Ricardo Wurmus dede052a2c
gnu: Add python-backcall.
* gnu/packages/python-xyz.scm (python-backcall): New variable.
2019-06-18 14:22:23 +02:00
Marius Bakke eed81080dc
gnu: python-pygments: Update to 2.4.2.
* gnu/packages/python-xyz.scm (python-pygments): Update to 2.4.2.
2019-06-18 12:47:37 +02:00
Tobias Geerinckx-Rice 1e609b78c7
gnu: stunnel: Update to 5.55.
* gnu/packages/web.scm (stunnel): Update to 5.55.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice 90d537f833
gnu: gaupol: Update to 1.6.
* gnu/packages/video.scm (gaupol): Update to 1.6.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice b37fa81d9b
gnu: eternalterminal: Update to 5.1.10.
* gnu/packages/terminals.scm (eternalterminal): Update to 5.1.10.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice 614f7df3ae
gnu: mercurial: Update to 5.0.1.
* gnu/packages/version-control.scm (mercurial): Update to 5.0.1.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice f2c119a129
gnu: rtv: Update to 1.27.0.
* gnu/packages/syndication.scm (rtv): Update to 1.27.0.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice ecd5c202b2
gnu: libnftnl: Update to 1.1.3.
* gnu/packages/linux.scm (libnftnl): Update to 1.1.3.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice 55c08305d6
gnu: gandi.cli: Update to 1.5.
* gnu/packages/networking.scm (gandi.cli): Update to 1.5.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice a0f2c945e3
gnu: hcxdumptool: Update to 5.1.5.
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.5.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice 6807d6a985
gnu: hcxtools: Update to 5.1.6.
* gnu/packages/networking.scm (hcxtools): Update to 5.1.6.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice 23414a8efa
gnu: mpd-mpc: Update to 0.32.
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.32.
2019-06-18 06:15:02 +02:00
Tobias Geerinckx-Rice 8dec0cdf6e
gnu: radare2: Update to 3.5.1.
* gnu/packages/engineering.scm (radare2): Update to 3.5.1.
2019-06-18 06:15:01 +02:00
Ivan Petkov 0ab5e91e1c
gnu: rust: Update to 1.35.0.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.34): ...this.
(rust): New variable.
2019-06-17 19:46:05 -07:00
Gábor Boskovits 46dc940c9a
gnu: Add mako.
* gnu/packages/wm.scm (mako): New variable.
2019-06-18 00:25:23 +02:00
Andreas Enge 4c32f116cd
gnu: Add libhomfly.
* gnu/packages/sagemath.scm (libhomfly): New variable.
2019-06-18 00:14:14 +02:00
Andreas Enge 972ef8f591
gnu: Add libbraiding.
* gnu/packages/sagemath.scm (libbraiding): New variable.
2019-06-18 00:14:14 +02:00
Danny Milosavljevic c8535731b8
gnu: python-flask-script: Fix tests.
* gnu/packages/python-web.scm
(python-flask-script)[arguments]<#:phases>[patch-tests]: New phase.
2019-06-17 22:56:19 +02:00
Ricardo Wurmus 27d6d24e63
gnu: python-scikit-learn: Update to 0.20.3.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.3.
2019-06-17 20:22:42 +02:00
Ricardo Wurmus a6f2ced34b
gnu: Add tbsp.
* gnu/packages/bioinformatics.scm (tbsp): New variable.
2019-06-17 20:22:38 +02:00
Andreas Enge bf473f0ca0
gnu: Add rw.
* gnu/packages/graph.scm (rw): New variable.
2019-06-17 19:47:15 +02:00
Andreas Enge f455d99dfa
gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here...
* gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
2019-06-17 19:47:15 +02:00
Nicolas Goaziou 7658904a34
gnu: Fix freeorion build.
* gnu/packages/games.scm (freeorion)[arguments]: Fix font unbundling.
2019-06-17 17:37:04 +02:00
Ludovic Courtès 20e4ee1e3b
gnu: gcc-mesboot-wrapper: Fix 'version' field.
Until now the 'version' field would match
'gcc-mesboot1-wrapper' ("4.7.4") instead of that of
'gcc-mesboot' ("4.9.4").

* gnu/packages/commencement.scm (gcc-mesboot-wrapper)[version]: New
field.
2019-06-17 17:14:46 +02:00
Andreas Enge 9f6065237d
gnu: Add edge-addition-planarity-suite.
* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
2019-06-17 17:02:01 +02:00
Andreas Enge 1e1a65a633
gnu: python-cypari2: Update to 2.1.1.
* gnu/packages/sagemath.scm (python-cypari2): Update to 2.1.1.
2019-06-17 16:00:13 +02:00
Andreas Enge 20caeea483
gnu: Add cliquer.
* gnu/packages/sagemath.scm (cliquer): New variable.
2019-06-17 16:00:13 +02:00
Efraim Flashner 505459d7cb
gnu: busybox: Don't install to usr.
* gnu/packages/busybox.scm (busybox)[arguments]: Add a custom phase
to prevent installing to %PREFIX/usr.
2019-06-17 16:27:16 +03:00
Gábor Boskovits de2d14f2ff
gnu: waybar: Add optional dependencies.
* gnu/packages/wm.scm(waybar)[inputs]: Add libdbusmenu, libnl,
libmpdclient and pulseaudio.
2019-06-17 13:33:06 +02:00
Ricardo Wurmus 5cfc16320a
gnu: python-scipy: Update to 1.2.2.
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.2.2.
2019-06-17 13:31:23 +02:00
Robert Vollmert f434664cc0
gnu: oil-shell: Update to 0.6pre22.
It turns out the currently packaged release fails to build for me.
According to upstream, the 0.6 pre-releases are preferable to
currently packaged 0.5.

gnu/packages/shells.scm (oil-shell): Update to 0.6pre22.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
Robert Vollmert 73eacca85e
gnu: kakoune: Remove dependency on boost.
kakoune builds without boost since a while already.

* gnu/packages/text-editors.scm (kakoune)[inputs]: Remove boost.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17 12:36:13 +02:00
Ludovic Courtès 123b9c02dd
gnu: open-zwave: Unbundle hidapi.
* gnu/packages/patches/open-zwave-hidapi.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/zwave.scm (open-zwave)[source](patches): New field.
(snippet): Delete 'cpp/hidapi'.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add HIDAPI.
2019-06-17 12:36:13 +02:00
Ludovic Courtès 1380be3c73
gnu: commencement: '%bootstrap-inputs+toolchain' no longer contains Mes.
* gnu/packages/commencement.scm (%bootstrap-inputs+toolchain): On
i686-linux and x86_64-linux, remove "bootstrap-mescc-tools" and "mes"
from %BOOTSTRAP-INPUTS.
2019-06-17 12:25:29 +02:00
Andreas Enge bf95a142bb
gnu: gap: Update to 4.10.1.
* gnu/packages/algebra.scm (gap): Update to 4.10.1.
Install headers and library files by hand, since the make targets have
disappeared. Delete the special check phase, since the "make check" target
has appeared. Remove a package that is no longer recommended, and enable
two recommended packages with clarified licenses.
2019-06-17 12:15:21 +02:00
Marius Bakke 2c35ae8219
gnu: bison: Disable parallel tests, too.
* gnu/packages/bison.scm (bison)[arguments]: Add #:parallel-tests?.
2019-06-17 11:23:44 +02:00
Efraim Flashner 55350f8316
gnu: cmst: Don't install files to usr.
* gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles
phase before 'build. Add more substitutions.
2019-06-17 10:02:47 +03:00
Efraim Flashner 9e3e80baa3
gnu: cava: Don't install files to usr.
* gnu/packages/audio.scm (cava)[arguments]: In configure-flags change
FONT_DIR to not use 'usr'.
2019-06-17 10:02:46 +03:00
Efraim Flashner ee0b4733e1
gnu: toybox: Don't install files to usr.
* gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to
remove any files installed in $PREFIX/usr.
2019-06-17 10:02:45 +03:00
Rutger Helling c9f0331152
gnu: xpra: Update to 2.5.2.
* gnu/packages/xorg.scm (xpra): Update to 2.5.2.
2019-06-17 08:28:38 +02:00
Chris Marusich 0bc010dacd
gnu: Add emacs-extend-smime.
* gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable.
2019-06-16 21:25:59 -07:00
Chris Marusich 3c33931c80
gnu: Upgrade emacs-default-encrypt to 4.4.
* gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade
to 4.4.
<sha256>: Update accordingly.
<uri, home-page>: Honor changes to upstream's website.
2019-06-16 21:25:59 -07:00
Ricardo Wurmus 932a6c422a
gnu: r-rhisat2: Update to 1.0.3.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3.
2019-06-17 04:55:12 +02:00
Ricardo Wurmus 42df44f645
gnu: r-seurat: Update to 3.0.2.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
2019-06-17 04:55:03 +02:00
Ricardo Wurmus 6dc3c58728
gnu: r-tximport: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
2019-06-17 04:54:56 +02:00
Ricardo Wurmus 7bbd06ed59
gnu: r-systempiper: Update to 1.18.1.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
2019-06-17 04:54:51 +02:00
Ricardo Wurmus fd61e9c5d6
gnu: r-r-utils: Update to 2.9.0.
* gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0.
2019-06-17 04:54:46 +02:00
Ricardo Wurmus 0f4182a137
gnu: r-dt: Update to 0.7.
* gnu/packages/statistics.scm (r-dt): Update to 0.7.
2019-06-17 04:54:40 +02:00
Ricardo Wurmus 074dd1806c
gnu: r-rcpparmadillo: Update to 0.9.500.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.500.2.0.
2019-06-17 04:54:36 +02:00
Ricardo Wurmus e89e4bb634
gnu: r-mime: Update to 0.7.
* gnu/packages/statistics.scm (r-mime): Update to 0.7.
2019-06-17 04:54:32 +02:00
Ricardo Wurmus 24868ae72e
gnu: r-formatr: Update to 1.7.
* gnu/packages/statistics.scm (r-formatr): Update to 1.7.
2019-06-17 04:54:27 +02:00
Ricardo Wurmus 4661effbd5
gnu: r-ggplot2: Update to 3.2.0.
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.2.0.
[propagated-inputs]: Remove r-plyr.
2019-06-17 04:54:11 +02:00
Ricardo Wurmus 18242e4b52
gnu: r-servr: Update to 0.14.
* gnu/packages/cran.scm (r-servr): Update to 0.14.
2019-06-17 04:54:05 +02:00
Ricardo Wurmus 9fea25cf32
gnu: r-polspline: Update to 1.1.15.
* gnu/packages/cran.scm (r-polspline): Update to 1.1.15.
2019-06-17 04:54:00 +02:00
Ricardo Wurmus 663a50e8f9
gnu: r-deldir: Update to 0.1-21.
* gnu/packages/cran.scm (r-deldir): Update to 0.1-21.
2019-06-17 04:53:55 +02:00
Ricardo Wurmus 776c62d1b2
gnu: r-nor1mix: Update to 1.3-0.
* gnu/packages/cran.scm (r-nor1mix): Update to 1.3-0.
2019-06-17 04:53:51 +02:00
Ricardo Wurmus 5cc896546b
gnu: r-tractor-base: Update to 3.3.2.
* gnu/packages/cran.scm (r-tractor-base): Update to 3.3.2.
2019-06-17 04:53:47 +02:00
Ricardo Wurmus 935c6532ac
gnu: r-rspectra: Update to 0.15-0.
* gnu/packages/cran.scm (r-rspectra): Update to 0.15-0.
2019-06-17 04:53:42 +02:00
Ricardo Wurmus a7794b7243
gnu: r-emmeans: Update to 1.3.5.
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.
2019-06-17 04:53:37 +02:00
Ricardo Wurmus 89afd03172
gnu: r-abcrf: Update to 1.8.
* gnu/packages/cran.scm (r-abcrf): Update to 1.8.
[propagated-inputs]: Add r-doparallel and r-foreach.
2019-06-17 04:53:20 +02:00
Ricardo Wurmus 45dcc89de7
gnu: r-sjmisc: Update to 2.8.0.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.0.
[propagated-inputs]: Remove r-haven; add r-insight.
2019-06-17 04:53:04 +02:00
Ricardo Wurmus e0cd8f7340
gnu: r-extradistr: Update to 1.8.11.
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.11.
2019-06-17 04:52:57 +02:00
Ricardo Wurmus bb6c8f207b
gnu: guile-gi: Update to 0.0.2.
* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.0.2.
[source]: Fetch using url-fetch.
[arguments]: Add make flags to remove unexpectedly passing test from
XFAIL_TESTS.
[native-inputs]: Remove autoconf, automake, and texinfo.
2019-06-17 04:52:22 +02:00
Ricardo Wurmus d1a3a8e15e
gnu: guile-picture-language: Update to 0.0.1-1-91d10c9.
* gnu/packages/guile-xyz.scm (guile-picture-language): Update to
0.0.1-1-91d10c9.
[build-system]: Use gnu-build-system.
[native-inputs]: Add autoconf, automake, imagemagick, pkg-config, and texinfo.
2019-06-17 03:06:53 +02:00
Tobias Geerinckx-Rice 58637415be
gnu: youtube-viewer: Refer to youtube-dl.
* gnu/packages/video.scm (youtube-viewer)[inputs]: Add youtube-dl.
[arguments]: Add ‘refer-to-inputs’ phase.
2019-06-17 03:04:31 +02:00
Tobias Geerinckx-Rice a157fb2723
gnu: radare2: Download over HTTPS.
* gnu/packages/engineering.scm (radare2)[source]: Use HTTPS.
2019-06-17 03:04:31 +02:00
Tobias Geerinckx-Rice e605820bc5
gnu: radare2: Don't use NAME in source URI.
* gnu/packages/engineering.scm (radare2)[source]: Hard-code NAME.
2019-06-17 03:04:30 +02:00
Tobias Geerinckx-Rice 935e4b3abd
gnu: nsd: Update to 4.2.0.
* gnu/packages/dns.scm (nsd): Update to 4.2.0.
2019-06-17 03:04:30 +02:00
Tobias Geerinckx-Rice 3abc9cc242
gnu: knot: Update to 2.8.2.
* gnu/packages/dns.scm (knot): Update to 2.8.2.
2019-06-17 03:04:30 +02:00
Tobias Geerinckx-Rice 8fadac9577
gnu: suil: Update to 0.10.4.
* gnu/packages/audio.scm (suil): Update to 0.10.4.
2019-06-17 03:04:30 +02:00
Jesse Gibbons 562a2a4095
gnu: Add freeorion
* gnu/packages/games.scm (freeorion): New variable.
2019-06-16 21:40:09 +02:00
Tobias Geerinckx-Rice 914bba2809
gnu: docker-compose: Add required Python dependencies.
* gnu/packages/python-xyz.scm (python-jsonschema-2.6):
New old public variable.
* gnu/packages/docker.scm (docker-compose)[inputs]:
Add python-docker-pycreds and use python-jsonschema-2.6.
2019-06-16 19:44:42 +02:00
Tobias Geerinckx-Rice 10a3297389
gnu: dstat: Add two patches, fix two bugs.
* gnu/packages/admin.scm (dstat)[source]: Add patches.
* gnu/packages/patches/dstat-fix-crash-when-specifying-delay.patch,
gnu/packages/patches/dstat-skip-devices-without-io.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-06-16 19:44:42 +02:00
Tobias Geerinckx-Rice fa67073f13
gnu: dstat: Fix Python 3 deprecation warning.
* gnu/packages/admin.scm (dstat)[arguments]:
Add ‘fix-python3-DeprecationWarning’ phase.
2019-06-16 19:44:42 +02:00
Tobias Geerinckx-Rice 4fce1ff129
gnu: Add font-anonymous-pro-minus.
* gnu/packages/fonts.scm (font-anonymous-pro-minus): New public variable.
2019-06-16 19:44:42 +02:00
Efraim Flashner 8bae6c744c
gnu: keepassxc: Update to 2.4.3.
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.3.
2019-06-16 14:26:45 +03:00
Mark H Weaver 86c05c4465
gnu: linux-libre: Update to 5.1.10.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.10.
(%linux-libre-hash): Update hash.
2019-06-16 04:11:07 -04:00
Mark H Weaver fc6290fb1f
gnu: linux-libre@4.19: Update to 4.19.51.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.51.
(%linux-libre-4.19-hash): Update hash.
2019-06-16 04:09:12 -04:00
Mark H Weaver 466595eeb2
gnu: linux-libre@4.14: Update to 4.14.126.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.126.
(%linux-libre-4.14-hash): Update hash.
2019-06-16 04:08:06 -04:00
Marius Bakke b1593c1c4f
gnu: bison: Disable parallel build.
Fixes <https://bugs.gnu.org/36238.
Reported by Carl Dong <contact@carldong.me>.

* gnu/packages/bison.scm (bison)[arguments]: New field.
2019-06-16 09:39:00 +02:00
Marius Bakke 871dbd6c6e
gnu: cross-base: Fix C++ cross-compilation problems with GCC 7.
* gnu/packages/cross-base.scm (cross-gcc-arguments)[#:configure-flags]: Add
"--with-sysroot=/".
2019-06-16 09:34:39 +02:00
Marius Bakke 3f151d90a3
gnu: ghostscript: Update to 9.27.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.27.
[arguments]: Add <#:parallel-tests?>.
2019-06-16 08:20:23 +02:00
Marius Bakke b70ffe4e94
gnu: jbig2dec: Update to 0.16.
* gnu/packages/image.scm (jbig2dec): Update to 0.16.
2019-06-16 08:19:53 +02:00
Gábor Boskovits 7a1d6a7708
gnu: Add waybar.
* gnu/packages/wm.scm(waybar): New variable.
2019-06-16 00:29:00 +02:00
Marius Bakke e960c20a06
gnu: adb: Build against OpenSSL 1.0.
* gnu/packages/android.scm (adb)[inputs]: Change OPENSSL to OPENSSL-1.0.
2019-06-15 23:47:34 +02:00
Marius Bakke 1a753d5673
gnu: poppler: Update to 0.77.0.
* gnu/packages/patches/inkscape-poppler-0.76.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/inkscape.scm (inkscape)[source](patches): New field.
* gnu/packages/patches/texlive-bin-luatex-poppler-compat.patch: Add two new hunks.
* gnu/packages/pdf.scm (poppler): Update to 0.77.0.
* gnu/packages/tex.scm (texlive-bin)[source]: Update Arch patches.
[arguments]: Adjust accordingly.
* gnu/packages/scribus.scm (scribus)[source](patches): Add two new origins.
2019-06-15 23:47:34 +02:00
Marius Bakke e9b27c70e3
gnu: texlive-bin: Remove GCC5 workaround.
* gnu/packages/tex.scm (texlive-bin)[arguments]: Remove "CXXFLAGS" from
 #:configure-flags.
2019-06-15 23:47:34 +02:00
Marius Bakke 549f4091c1
gnu: libarchive: Update to 3.4.0.
* gnu/packages/patches/libarchive-CVE-2018-1000877.patch,
gnu/packages/patches/libarchive-CVE-2018-1000878.patch,
gnu/packages/patches/libarchive-CVE-2018-1000880.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/backup.scm (libarchive): Update to 3.4.0.
[source](uri): Add alternative download location.
[source](patches): Remove.
2019-06-15 23:47:34 +02:00
Marius Bakke e2083575d7
gnu: nghttp2: Update to 1.39.1.
* gnu/packages/web.scm (nghttp2): Update to 1.39.1.
2019-06-15 23:47:34 +02:00
Marius Bakke 7892edc256
gnu: GnuTLS: Update to 3.6.8.
* gnu/packages/tls.scm (gnutls): Update to 3.6.8.
[arguments]: Add "--with-guile-{site,site-ccache,extension-dir}" to #:configure-flags.
2019-06-15 23:47:34 +02:00
Marius Bakke 731d471a37
gnu: harfbuzz: Update to 2.5.1.
* gnu/packages/gtk.scm (harfbuzz): Update to 2.5.1.
[source]: Update source file name.
2019-06-15 23:47:34 +02:00
Marius Bakke 755e81aba1
gnu: curl: Update to 7.65.1.
* gnu/packages/curl.scm (curl): Update to 7.65.1.
2019-06-15 23:47:34 +02:00
Marius Bakke 2489acc9bd
gnu: CMake: Update to 3.14.5.
* gnu/packages/cmake.scm (cmake-minimal): Update to 3.14.5.
2019-06-15 23:47:34 +02:00
Marius Bakke fefa75f398
gnu: freetype: Update to 2.10.0.
* gnu/packages/fontutils.scm (freetype): Update to 2.10.0.
2019-06-15 23:47:33 +02:00
Gábor Boskovits 121d9d1a7a
gnu: Add spdlog.
* gnu/packages/logging.scm(spdlod): New variable.
2019-06-15 21:50:49 +02:00
Ludovic Courtès 494a8cd03a
gnu: units: Update to 2.19.
* gnu/packages/maths.scm (units): Update to 2.19.
2019-06-15 18:29:58 +02:00
Ludovic Courtès a59902ff11
gnu: rush: Update to 1.9.
* gnu/packages/rush.scm (rush): Update to 1.9.
2019-06-15 18:29:45 +02:00
Ludovic Courtès 25cb591ce4
gnu: wget: Update to 1.20.3.
* gnu/packages/wget.scm (wget): Update to 1.20.3.
2019-06-15 18:29:31 +02:00
Ludovic Courtès 02dad49d42
gnu: gengetopt: Update to 2.23.
* gnu/packages/popt.scm (gengetopt): Update to 2.23.
[native-inputs]: New field.
2019-06-15 18:28:13 +02:00
Ludovic Courtès d2de780272
gnu: dico: Update to 2.9.
* gnu/packages/dico.scm (dico): Update to 2.9.
2019-06-15 18:24:52 +02:00
Ludovic Courtès b3f02caeec
gnu: libmicrohttpd: Update to 0.9.64.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.64.
2019-06-15 18:23:38 +02:00
Ludovic Courtès 4bf8500384
gnu: libcap: Update to 2.27.
* gnu/packages/linux.scm (libcap): Update to 2.27.
2019-06-15 15:14:06 +02:00
Meiyo Peng ddd401d28f
gnu: swayidle: Add elogind support.
* gnu/packages/wm.scm (swayidle)[arguments]: Add #:configure-flags.
  [inputs]: Add elogind.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-15 14:43:34 +02:00
Pierre Neidhardt 24087364f5
gnu: emacs-desktop-environment: Update to 0.2.2.
* gnu/packages/emacs-xyz.scm (emacs-desktop-environment): Update to 0.2.2.
2019-06-15 13:44:57 +02:00
Marius Bakke a60dbad3bc
Merge branch 'staging' 2019-06-15 09:46:12 +02:00
Marius Bakke c7fbf61865
gnu: Remove leftover patch.
This is a follow-up to commit d680a8afd1.

* gnu/packages/patches/inkscape-poppler-compat3.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-06-15 09:42:12 +02:00
Marius Bakke af847bd88f
gnu: xorg-server-for-tests: Update to 1.20.5.
* gnu/packages/xorg.scm (xorg-server-for-tests)[source, version]: Remove.
2019-06-15 09:22:40 +02:00
Marius Bakke fd641a23f5
gnu: libnsl: Do not use unstable tarball.
* gnu/packages/onc-rpc.scm (libnsl)[source]: Switch to GIT-FETCH.
2019-06-15 09:18:51 +02:00
Marius Bakke d95503ab82
gnu: libtirpc: Update to 1.1.4.
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.1.4.
2019-06-15 09:13:48 +02:00
Gábor Boskovits 4c7e8c234d
gnu: Add benchmark.
* gnu/packages/benchmark.scm(benchmark): New variable.
* gnu/packages/patches/benchmark-unbundle-googletest.patch: New file.
* gnu/local.mk(dist_patch_DATA): Add it.
2019-06-14 23:18:12 +02:00
Ludovic Courtès 92d00ca466
build: Remove 'gnu/packages/bootstrap' and its binaries.
* gnu/local.mk (bootstrapdir, bootstrap_i686_linuxdir)
(bootstrap_armhf_linuxdir, bootstrap_aarch64_linuxdir)
(bootstrap_mips64el_linuxdir, dist_bootstrap_i686_linux_DATA)
(dist_bootstrap_armhf_linux_DATA, dist_bootstrap_aarch64_linux_DATA)
(dist_bootstrap_mips64el_linux_DATA): Remove.
(set-bootstrap-executable-permissions): Remove target.
* Makefile.am (install-data-hook): Remove dependency on
'set-bootstrap-executable-permissions'.
* gnu/packages/bootstrap: Remove directory.
* tests/search-paths.scm ("evaluate-search-paths, separator is #f"):
Adjust to match .../aux-files/linux-libre.
2019-06-14 22:09:38 +02:00
Ludovic Courtès 1ba0b1e6ec
packages: Remove 'search-bootstrap-binary'.
* gnu/packages.scm (%bootstrap-binaries-path, search-bootstrap-binary):
Remove.
* gnu/packages/bootstrap.scm (bootstrap-executable): Export.
* guix/tests.scm (bootstrap-binary-file, search-bootstrap-binary):
Export.
* tests/derivations.scm: Remove (gnu packages) import.
* tests/grafts.scm: Likewise.
* tests/guix-daemon.sh: Likewise.
2019-06-14 21:57:39 +02:00
Ludovic Courtès 03d76577b9
tests: Make builds less expensive.
The switch to the reduced bootstrap broke build time assumptions made by
tests, notably the assumption that GNU-MAKE-BOOT0 was cheap to build.
This commit adjusts this to make these tests cheaper.

* gnu/packages/bootstrap.scm (%bootstrap-inputs-for-tests): New variable.
* guix/tests.scm (gnu-make-for-tests): New variable.
* tests/guix-environment.sh: Use GNU-MAKE-FOR-TESTS instead of
GNU-MAKE-BOOT0.  Remove test with FINDUTILS-BOOT0.
* tests/guix-package-net.sh (boot_make): Use GNU-MAKE-FOR-TESTS.
* tests/packages.scm ("GNU Make, bootstrap"): Likewise.
* tests/profiles.scm ("profile-derivation relative symlinks, two entries"):
Likewise.
* tests/union.scm (%bootstrap-inputs): Remove.
("union-build"): Use %BOOTSTRAP-INPUTS-FOR-TESTS instead of
%BOOTSTRAP-INPUTS.
2019-06-14 21:57:39 +02:00
Ludovic Courtès 836a85da0e
gnu: bootstrap: Download the bootstrap bash, mkdir, tar, and xz binaries.
* gnu/packages/bootstrap.scm (%bootstrap-executables): New variable.
(bootstrap-executable-url, bootstrap-executable): New procedure.
(raw-build)[->store]: Use 'run-with-store' and 'origin->derivation'.
Add calls to 'derivation->output-path', and remove the list of
references passed to 'add-text-to-store' for BUILDER.  Augment the list
of #:inputs passed to 'derivation'.
(package-from-tarball): Use 'bootstrap-executable' instead of
'search-bootstrap-binary'.
(%bootstrap-glibc, %bootstrap-gcc, %bootstrap-mescc-tools)
(%bootstrap-mes): Likewise.
* guix/scripts/environment.scm (environment-bash): Use
'bootstrap-executable' instead of 'search-bootstrap-binary'.
(guix-environment): Adjust CONTAINER? case accordingly.
* po/guix/POTFILES.in: Add gnu/packages/bootstrap.scm.
2019-06-14 21:57:01 +02:00
Ricardo Wurmus bc70516bba
gnu: Remove r-loomr.
The loomR package is actually non-free software according to its author.  See
https://github.com/mojaveazure/loomR/pull/24.

* gnu/packages/bioinformatics.scm (r-loomr): Remove variable.
2019-06-14 17:32:04 +02:00
Meiyo Peng e23b6a6800
gnu: sway: Hardcode path to swaybg.
* gnu/packages/wm.scm (sway)[arguments]: Hardcode path to swaybg.
  [inputs]: Add swaybg.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-14 14:06:06 +02:00
Marius Bakke 71bfbe9ba8
gnu: whois: Update to 5.4.3.
* gnu/packages/networking.scm (whois): Update to 5.4.3.
2019-06-14 14:06:06 +02:00
Marius Bakke 54200da4b3
gnu: ungoogled-chromium: Update to 75.0.3770.90-0.5d8abc3 [fixes CVE-2019-5842].
* gnu/packages/chromium.scm (%chromium-version): Update to 75.0.3770.90.
(%debian-revision): Update to 'debian/75.0.3770.90-1'.
(%chromium-origin): Update hashes.
2019-06-14 14:05:47 +02:00
Marius Bakke 4e8284f031
gnu: speexdsp: Update to 1.2.0.
* gnu/packages/xiph.scm (speexdsp): Update to 1.2.0.
2019-06-14 11:49:31 +02:00
Marius Bakke bbeeeb148e
gnu: Sphinx: Update to 2.1.1.
* gnu/packages/sphinx.scm (python-sphinx): Update to 2.1.1.
2019-06-14 11:49:12 +02:00
Marius Bakke 950c3a2d5e
gnu: python-mako: Update to 1.0.12.
* gnu/packages/python-xyz.scm (python-mako): Update to 1.0.12.
2019-06-14 11:48:52 +02:00
Marius Bakke 753eb4118c
gnu: python-markupsafe: Update to 1.1.1.
* gnu/packages/python-xyz.scm (python-markupsafe): Update to 1.1.1.
[arguments]: New field.  Override check phase.
[native-inputs]: Add PYTHON-PYTEST.
2019-06-14 11:48:10 +02:00
Marius Bakke 16c38e2b9c
gnu: imagemagick: Update to 6.9.10-49.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-49.
2019-06-14 11:47:41 +02:00
Marius Bakke 14b53192a4
gnu: libsigc++: Update to 2.10.2.
* gnu/packages/glib.scm (libsigc++): Update to 2.10.2.
2019-06-14 11:47:21 +02:00
Marius Bakke 830a0fe64e
gnu: cups-filters: Update to 1.25.0.
* gnu/packages/cups.scm (cups-filters): Update to 1.25.0.
2019-06-14 11:47:02 +02:00
Carl Dong 44f07d1dc6
gnu: guile: Disable unreliable out-of-memory test
* gnu/packages/patches/guile-2.2-skip-oom-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/guile.scm (guile-2.2)[source](patches): Add
  "guile-2.2-skip-oom-test.patch".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-14 09:46:49 +02:00
Ludovic Courtès 30825c4629
gnu: emacs-org-noter: Tweak.
* gnu/packages/emacs-xyz.scm (emacs-org-noter): Adjust indentation and
description.
2019-06-13 23:27:34 +02:00
Dimakakos Dimos 576cb396ea
gnu: Add emacs-org-noter
* gnu/packages/emacs-xyz.scm (emacs-org-noter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:23:28 +02:00
Alex Griffin 1aa2c25560
gnu: ikiwiki: Update to 3.20190228.
* gnu/packages/web.scm (ikiwiki): Update to 3.20190228.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
Alex Griffin 1682368932
gnu: perl-yaml-libyaml: Update to 0.78.
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.78.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
Alex Griffin 15f836efc1
gnu: perl-canary-stability: Update to 2013.
* gnu/packages/perl.scm (perl-canary-stability): Update to 2013.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:45 +02:00
Alex Griffin a3abc3fdfc
gnu: perl-db-file: Update to 1.852.
* gnu/packages/databases.scm (perl-db-file): Update to 1.852.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 23:06:44 +02:00
Alex Griffin 6bb5a7e08c
gnu: Add emacs-solaire-mode.
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:06 +03:00
Alex Griffin 4df1d31b54
gnu: Add emacs-mixed-pitch.
* gnu/packages/emacs-xyz.scm (emacs-mixed-pitch): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
Alex Griffin fdcd50b93b
gnu: Add emacs-restart-emacs.
* gnu/packages/emacs-xyz.scm (emacs-restart-emacs): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
Alex Griffin 9989e06fda
gnu: Add emacs-elfeed-org.
* gnu/packages/emacs-xyz.scm (emacs-elfeed-org): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-06-13 23:40:05 +03:00
Oleg Pykhalov c56a65aae7
gnu: Add emacs-xtest.
* gnu/packages/emacs-xyz.scm (emacs-xtest): New variable.
2019-06-13 23:40:05 +03:00
Efraim Flashner 9062fde4c6
gnu: parcimonie: Update source and home-page.
* gnu/packages/gnupg.scm (parcimonie)[source]: Update to new url.
[home-page]: Same.
2019-06-13 20:43:20 +03:00
Robert Vollmert ed8d3f33a5
build-system/haskell: Generate Setup.hs if needed.
The default Setup.hs is boilerplate that is frequently left out of
source packages.  Several packages already add a phase to generate it,
so moving this phase to the build system is just factoring out an
existing pattern.

See <https://github.com/phadej/time-compat/issues/4>.

* guix/build/haskell-build-system.scm (generate-setuphs): New procedure.
(%standard-phases): Add it after 'unpack'.
* gnu/packages/haskell.scm (ghc-foundation, ghc-inline-c,
ghc-inline-c-cpp, ghc-rio): Remove 'arguments'.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2019-06-13 13:30:24 -04:00
Ludovic Courtès b644008ca2
gnu: mes-boot, tcc-boot0: Require nyacc 0.86.
This is a followup to b801646727.

* gnu/packages/commencement.scm (mes-boot, tcc-boot0): Use source from
NYACC-0.86 instead of NYACC.
2019-06-13 18:09:21 +02:00
Marius Bakke f388f4a568
Merge branch 'staging' 2019-06-13 15:27:30 +02:00
Marius Bakke 2a9d89afb6
gnu: gstreamer: Skip failing test on 32-bit systems.
* gnu/packages/gstreamer.scm (gstreamer)[arguments]: When building for a
32-bit system, add #:phases.
2019-06-13 14:08:32 +02:00
Nicolas Goaziou 3745909dc9
gnu: Add ri-li.
* gnu/packages/games.scm (ri-li): New variable.
* gnu/packages/patches/ri-li-modernize_cpp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
2019-06-13 13:59:58 +02:00
Ludovic Courtès d9bbfe042e
Merge branch 'master' into core-updates 2019-06-13 13:24:35 +02:00
Carlo Zancanaro 47f2168b6f
gnu: Add Kawa.
* gnu/packages/kawa.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-06-13 13:00:37 +02:00
Ludovic Courtès 0ddf17dc1a
gnu; emacs-realgud: Add a 'file-name' field to the origin.
* gnu/packages/emacs-xyz.scm (emacs-realgud)[source]: Add 'file-name'.
2019-06-13 13:00:37 +02:00
Brian Leung 0882c491f0
gnu: emacs-realgud: Update to 1.5.0.
* gnu/packages/emacs-xyz.scm (emacs-realgud): Update to 1.5.0.
[source]: Fetch from git.
Remove upstreamed patch.
* gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 13:00:37 +02:00
Ludovic Courtès ed8a551653
gnu: gpxsee: Fetch from Git instead of a generated tarball.
* gnu/packages/gps.scm (gpxsee)[source]: Use 'git-fetch'.
2019-06-13 13:00:37 +02:00
Nikolay Korotkiy 286ef5d97c
gnu: gpxsee: Upgrade to 7.8
* gnu/packages/gps.scm (gpxsee): Update to 7.8.
[arguments]: Leave "config.h" unchanged in 'configure' phase.
Remove 'install' phase.
[home-page, synopsis, description]: Update.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 13:00:37 +02:00
Ludovic Courtès b801646727
gnu: nyacc: Add 0.94.0.
* gnu/packages/mes.scm (nyacc): Rename to...
(nyacc-0.86): ... this.
(nyacc): New variable.
(mes)[propagated-inputs]: Use NYACC-0.86 instead of NYACC.
2019-06-13 13:00:36 +02:00
Nicolas Goaziou 4d6d2d7cca
gnu: gimp: Update to 2.10.12.
* gnu/packages/gimp.scm (gimp): Update to 2.10.12.
2019-06-13 12:52:55 +02:00
Nicolas Goaziou 42b641b7d8
gnu: babl: Update to 0.1.66.
* gnu/packages/gimp.scm (babl): Update to 0.1.66.
2019-06-13 12:52:40 +02:00
LaFreniere, Joseph aa86c3adbd
gnu: emacs-perspective: Update to 2.2.
* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.2.
[source]: Download using git-fetch.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-06-13 10:46:24 +03:00
Efraim Flashner e22edabbb5
gnu: gpodder: Only return #t when needed.
* gnu/packages/gpodder.scm (gpodder)[arguments]: Return #t from
'do-not-run-msgmerge. Don't return #t from 'install.
2019-06-13 09:35:08 +03:00
Pierre Langlois 2bb078efe5
gnu: gpodder: Update to 3.10.9.
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.9.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-06-13 09:29:27 +03:00
Tobias Geerinckx-Rice 5cc5364eba
gnu: dstat: Add python2-six.
* gnu/packages/admin.scm (dstat)[inputs]: Add python2-six.
[arguments]: Add ‘wrap’ phase to make dstat find required modules.
2019-06-13 02:26:21 +02:00
Florian Pelz bd9b15fb31
gnu: Add USB_ModeSwitch.
* gnu/packages/usb-modeswitch.scm: New file.
* gnu/packages/patches/usb-modeswitch-accept-config-arg.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add package.
  (dist_patch_DATA): Add patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-13 00:44:01 +02:00
Jan Nieuwenhuizen f0de9544a3
gnu: Add emacsy.
* gnu/packages/guile-xyz.scm (emacsy): New variable.
2019-06-12 23:31:43 +02:00
Leo Famulari ff22ff42a1
gnu: GParted: Update 1.0.0.
* gnu/packages/disk.scm (gparted): Update to 1.0.0.
[arguments]: Remove obsolete configure flag.
[inputs]: Use gtkmm@3. Add yelp-tools and itstool. Remove libxslt,
gnome-doc-utils, docbook-xml-4.2, python-2, python2-libxml2, and which.
[native-inputs]: Add lvm2.
2019-06-12 15:46:53 -04:00
Mark H Weaver ac72162efd
gnu: linux-libre: Update to 5.1.9.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.9.
(%linux-libre-hash): Update hash.
2019-06-12 13:05:09 -04:00
Mark H Weaver 6a2d0191c6
gnu: linux-libre@4.19: Update to 4.19.50.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.50.
(%linux-libre-4.19-hash): Update hash.
2019-06-12 13:03:53 -04:00
Mark H Weaver 7ef05bcf4b
gnu: linux-libre@4.14: Update to 4.14.125.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.125.
(%linux-libre-4.14-hash): Update hash.
2019-06-12 13:01:12 -04:00
Mark H Weaver 07b7a45a49
gnu: linux-libre@4.9: Update to 4.9.181.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.181.
2019-06-12 13:00:33 -04:00
Mark H Weaver a542521a70
gnu: linux-libre@4.4: Update to 4.4.181.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.181.
2019-06-12 12:59:50 -04:00
Christopher Baines 2916deb91b
gnu: perl-io-socket-ssl: Update to 2.066.
The previous version failed to build, but this updated version does build
successfully.

* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.066.
2019-06-12 17:49:23 +01:00
Julien Lepiller 24d32e67db
gnu: Add python-pynvim.
* gnu/packages/vim.scm (python-pynvim, python2-pynvim): New variables.
2019-06-12 18:48:15 +02:00
Ricardo Wurmus 798b80cea2
gnu: Add r-txdb-hsapiens-ucsc-hg38-knowngene.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): New variable.
2019-06-12 16:23:44 +02:00
Marius Bakke 136eeb0b49
gnu: ungoogled-chromium: Update to 75.0.3770.80-0.5d8abc3.
* gnu/packages/chromium.scm (%preserved-third-party-files): Update for 75.
(%chromium-version): Update to 75.0.3770.80.
(%ungoogled-revision): Update to 5d8abc38b43a62f379615a0dc972b29d9aebb4b4.
(%debian-revision): Update to debian/75.0.3770.80-1.
(%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes.
(ungoogled-chromium-source): Include Debians GCC6 patches.
(ungoogled-chromium)[arguments]: Add "enable_vr=false" to #:configure-flags.
2019-06-12 13:29:45 +02:00
Marius Bakke d0804ea0c6
gnu: chromium: Move origins into separate variables.
* gnu/packages/chromium.scm (%chromium-origin, %ungoogled-origin,
%debian-origin): New variables.
(ungoogled-chromium-source): Adjust accordingly.
2019-06-12 13:29:35 +02:00
Ricardo Wurmus 6054c823ae
gnu: pigx-rnaseq: Update to 0.0.6.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.6.
[inputs]: Remove bedtools.
2019-06-12 13:12:00 +02:00
Efraim Flashner e38731138d
gnu: wget.scm: List inputs alphabetically.
* gnu/packages/wget.scm: List inputs alphabetically.
2019-06-12 12:58:34 +03:00
Efraim Flashner d7397187df
gnu: wget: Change default paste site.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Change default paste
site in custom 'remove-dead-paste-site phase.
2019-06-12 12:58:33 +03:00
Efraim Flashner 08b00d384b
gnu: wgetpaste: Add xclip to wrapper program list.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add xclip to list of
wrapper programs in custom 'wrap-program phase.
[inputs]: Add xclip.
2019-06-12 12:58:33 +03:00
Ricardo Wurmus ae6fa185af
gnu: Add r-annotatr.
* gnu/packages/bioconductor.scm (r-annotatr): New variable.
2019-06-12 11:07:37 +02:00
Ivan Petkov 2444abd9c1
gnu: crate: Add proc-macro2 and quote.
* gnu/packages/crates-io.scm: (rust-proc-macro2): New variable.
(rust-quote): New variable.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-11 18:05:44 -07:00
Ivan Petkov cb2471f726
gnu: crate: Add unicode-xid.
* gnu/local.mk: (GNU_SYSTEM_MODULES): Add packages/crates-io.scm.
* gnu/packages/crates-io.scm: New file, containing unicode-xid.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-11 18:05:44 -07:00
Amar Singh a38525789c
gnu: Add emacs-shroud.
* gnu/packages/emacs-xyz.scm (emacs-shroud): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-06-11 22:35:26 +02:00
Christopher Lemmer Webber 948ecc27dd
gnu: racket: Update to 7.3.
* gnu/packages/scheme.scm (racket): Update to 7.3.
* gnu/packages/patches/racket-store-checksum-override.patch: Update for Racket
  7.3.
2019-06-11 13:45:27 -04:00
Ricardo Wurmus 944cb87a33
gnu: Add r-psiplot.
* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
2019-06-11 13:39:50 +02:00
Marius Bakke 58bf51b4c0
Merge branch 'master' into staging 2019-06-11 10:27:09 +02:00
Marius Bakke bf3005346e
gnu: tbb: Update to 2019_U8.
* gnu/packages/tbb.scm (tbb): Update to 2019_U8.
2019-06-11 09:31:24 +02:00
Marius Bakke 6c98d9c7fc
gnu: offlineimap: Update to 7.2.4.
* gnu/packages/mail.scm (offlineimap): Update to 7.2.4.
2019-06-11 09:31:24 +02:00
Rutger Helling 80166beca2
gnu: wine-staging: Update to 4.10.
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.10.
* gnu/packages/wine.scm (wine-staging): Update to 4.10.
2019-06-11 08:28:02 +02:00
Rutger Helling 0debb9ac7e
gnu: faudio: Update to 19.06.07.
* gnu/packages/audio.scm (faudio): Update to 19.06.07.
2019-06-11 08:28:01 +02:00
Rutger Helling b6c31f0e50
gnu: kitty: Update to 0.14.2.
* gnu/packages/terminals.scm (kitty): Update to 0.14.2.
2019-06-11 08:28:01 +02:00
Tobias Geerinckx-Rice 501d4b335a
gnu: grim: Update to 1.2.0.
* gnu/packages/image.scm (grim): Update to 1.2.0.
2019-06-10 23:53:05 +02:00
Tobias Geerinckx-Rice 7d5113e50e
gnu: slurp: Update to 1.2.0.
* gnu/packages/image.scm (slurp): Update to 1.2.0.
2019-06-10 23:53:05 +02:00
Ricardo Wurmus 075a90946b
gnu: Add r-biosigner.
* gnu/packages/bioconductor.scm (r-biosigner): New variable.
2019-06-10 13:41:48 +02:00
Ricardo Wurmus a9fac3f4d3
gnu: Add r-ropls.
* gnu/packages/bioconductor.scm (r-ropls): New variable.
2019-06-10 13:41:45 +02:00
Mark H Weaver 31775e400e
gnu: linux-libre: Update to 5.1.8.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.8.
(%linux-libre-hash): Update hash.
2019-06-10 01:52:15 -04:00
Mark H Weaver 84b3d9dd93
gnu: linux-libre@4.19: Update to 4.19.49.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.49.
(%linux-libre-4.19-hash): Update hash.
2019-06-10 01:51:08 -04:00
Mark H Weaver 5d293300f8
gnu: linux-libre@4.15: Remove package.
This release series is no longer supported upstream.

* gnu/packages/linux.scm (%linux-libre-4.15-version)
(%linux-libre-4.15-hash, linux-libre-4.15)
(linux-libre-headers-4.15): Remove variables.
2019-06-10 01:48:01 -04:00