18f5d2a70a
gnu: Add reference to (gnu packages graph).
...
This is a follow-up to 1738138cb3
2017-08-09 15:43:35 +02:00
1738138cb3
gnu: r-igraph: Move to (gnu packages graph).
...
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
2017-08-09 14:47:47 +02:00
31476df32e
gnu: Add python-igraph.
...
* gnu/packages/graph.scm (python-igraph): New variable.
2017-08-09 14:47:47 +02:00
e57fffad90
gnu: Add igraph.
...
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-09 14:47:47 +02:00
ea77385c4c
gnu: viewnior: Don't build icon-theme.cache.
...
* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to
disable building the icon-theme.cache.
2017-08-09 14:09:43 +03:00
2d5bf32b8a
gnu: googletest: Build shared libraries.
...
* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON"
in #:configure-flags.
2017-08-09 13:53:29 +03:00
c608fe8cf3
gnu: Add ois.
...
* gnu/packages/game-development.scm (ois): New variable.
2017-08-09 13:53:16 +03:00
d84b09e937
gnu: dealii: Update to 8.5.0.
...
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
05cca6ce90
gnu: stress-make: Patch default shell.
...
* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell
phase.
2017-08-09 01:56:53 -05:00
bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
...
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
2509522c4f
gnu: suitesparse: Use modify-phases.
...
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
...
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
baeaf8821d
gnu: slepc: Update to 3.7.4.
...
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link. Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
41a46a5035
gnu: petsc: Update to 3.7.6.
...
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
026051953d
gnu: epiphany: Update to 3.24.3.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.24.3.
2017-08-09 07:20:57 +02:00
c762011e40
gnu: tracker: Update to 1.12.2.
...
* gnu/packages/gnome.scm (tracker): Update to 1.12.2.
2017-08-09 07:20:56 +02:00
666901b298
gnu: gnome-online-accounts: Update to 3.24.2.
...
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.24.2.
2017-08-09 07:20:56 +02:00
a51fc34c28
gnu: mutter: Update to 3.24.4.
...
* gnu/packages/gnome.scm (mutter): Update to 3.24.4.
2017-08-09 07:20:55 +02:00
0d2df50caf
gnu: gedit: Support gspell.
...
* gnu/packages/gnome.scm (gedit)[arguments]: Remove #:configure-flags.
[inputs]: Add gspell.
2017-08-09 07:20:55 +02:00
e3705bb6ea
gnu: gedit: Update to 3.22.1.
...
* gnu/packages/gnome.scm (gedit): Update to 3.22.1.
2017-08-09 07:20:54 +02:00
eccd35be3d
gnu: gspell: Propagate enchant dependency.
...
* gnu/packages/gnome.scm (gspell)[inputs]: Move enchant from here...
[propagated-inputs]: ...to here.
2017-08-09 07:20:09 +02:00
a801ae4cae
gnu: gspell: Order inputs alphabetically.
...
* gnu/packages/gnome.scm (gspell)[inputs, native-inputs]: Re-order.
2017-08-09 07:20:09 +02:00
9099bedfea
gnu: gnumeric: Update to 1.12.35.
...
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.35.
2017-08-09 07:20:08 +02:00
e2bf423ab4
gnu: brasero: Update to 3.12.2.
...
* gnu/packages/gnome.scm (brasero): Update to 3.12.2.
2017-08-09 07:20:08 +02:00
f032d0be9c
gnu: Use HTTPS for gnome.org and subdomains.
...
* gnu/packages/fonts.scm (font-bitstream-vera)[home-page]: Use HTTPS.
* gnu/packages/glib.scm (glib)[home-page]: Likewise.
* gnu/packages/gnome.scm (gcr, libgnome-keyring, gnome-keyring, evince)
(gnome-icon-theme, libgsf, gnome-mime-data, vala, vte, python2-rsvg)
(glib-networking, gnome-settings-daemon, libchamplain, grilo, grilo-plugins)
(gjs, zenity, mutter, network-manager, network-manager-applet, gdm)
[home-page]: Likewise.
* gnu/packages/gtk.scm (gtk-engines, murrine)[home-page]: Likewise.
2017-08-09 00:49:41 +02:00
9bb47d7df8
gnu: 0ad: Update to 0.0.22-alpha.
...
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.22-alpha.
2017-08-08 21:24:01 +01:00
0642838b2e
services: herd: Add a stop-service procedure.
...
* gnu/services/herd.scm (stop-service): New procedure.
2017-08-08 20:49:08 +01:00
dc7b3e5633
services: herd: Fix matching ok responses from shepherd service.
...
Previously the match expression case for a successful response
(where error is #f) required that the result component contained a list with a
single element.
As far as I see when looking at the responses from the shepherd, this is not
normally the case. Therefore, to avoid treating successful responses as
errors, make the match requirement more permissive, accepting any value.
* gnu/services/herd.scm (invoke-action): Change match condition for ok responses.
2017-08-08 20:48:53 +01:00
65831c6425
gnu: babl: Update to 0.1.28.
...
* gnu/packages/gimp.scm (babl): Update to 0.1.28.
2017-08-08 18:43:07 +03:00
3616ff51b3
gnu: gegl: Use 'modify-phases' syntax.
...
* gnu/packages/gimp.scm (gegl)[arguments]: Use the 'modify-phases' syntax.
2017-08-08 18:43:05 +03:00
b0a21b56db
gnu: gegl: Fix building on aarch64.
...
* gnu/packages/gimp.scm (gegl)[arguments]: Add '-lm' configure-flag.
2017-08-08 18:43:03 +03:00
cc36165efa
gnu: ruby-activesupport: Update to 5.1.3.
...
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.1.3.
2017-08-08 21:54:20 +10:00
b998781d24
gnu: pciutils: Update to 3.5.5.
...
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.5.
2017-08-08 05:23:38 +02:00
a40af5d0ad
gnu: hunspell: Update to 1.6.1.
...
* gnu/packages/libreoffice.scm (hunspell): Update to 1.6.1.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Add ‘bootstrap’ phase.
2017-08-08 05:23:37 +02:00
fc3560fff1
gnu: hunspell: Update home page.
...
* gnu/packages/libreoffice.scm (hunspell)[home-page]: Update it.
2017-08-08 05:23:37 +02:00
625761a502
gnu: aspell-dict-en: Update to 2017.01.22-0.
...
Add missing copyright line for 2016.
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2017.01.22-0.
2017-08-08 05:23:37 +02:00
d459524713
gnu: moreutils: Update to 0.61.
...
* gnu/packages/moreutils.scm (moreutils): Update to 0.61.
2017-08-08 05:23:36 +02:00
7fae2063f8
gnu: sudo: Use ‘modify-phases’ syntax.
...
* gnu/packages/admin.scm (sudo)[arguments]: Use ‘modify-phases’.
2017-08-08 05:23:36 +02:00
4f4134c26d
gnu: linux-libre: Update to 4.12.5.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.5.
(%linux-libre-hash): Update hash.
2017-08-07 21:33:03 -04:00
99ccc74725
gnu: linux-libre@4.9: Update to 4.9.41.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.41.
2017-08-07 21:32:13 -04:00
c56b08b1e5
gnu: linux-libre@4.4: Update to 4.4.80.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.80.
2017-08-07 21:31:36 -04:00
c36e27d504
gnu: linux-libre@4.1: Update to 4.1.43.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.43.
2017-08-07 21:30:47 -04:00
63755fcd65
gnu: ruby-puma: Update to 3.9.1.
...
* gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1.
[source]: Remove patch.
[arguments]: Disable tests.
[native-inputs]: Remove field.
* gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-08 09:31:18 +10:00
5b0c223ae3
gnu: ruby-nokogiri-diff: Update to 0.2.0-1.a38491e4.
...
* gnu/packages/ruby.scm (ruby-nokogiri-diff): Update to 0.2.0-1.a38491e4.
2017-08-08 09:30:44 +10:00
5071f17b29
gnu: ruby-tdiff: Update to 0.3.3-1.b662a604.
...
* gnu/packages/ruby.scm: Update to 0.3.3-1.b662a604
2017-08-08 09:30:40 +10:00
e7ea30d59a
ruby: Replace with ruby-2.4.1.
...
* gnu/packages/ruby.scm (ruby-2.4.1): New variable.
(ruby)[replacement]: New field.
2017-08-08 09:30:02 +10:00
2d9495da23
Merge branch 'master' into core-updates
2017-08-07 16:45:16 -04:00
57e96e48b1
gnu: propeller-gcc-4: Don't build on aarch64-linux.
...
* gnu/packages/embedded.scm (propeller-gcc-4)[supported-system]: New field.
2017-08-07 17:02:24 +03:00
6eed26443f
gnu: nim: Update to 0.17.0.
...
* gnu/packages/nim.scm (nim): Update to 0.17.0.
[source, home-page]: Use https.
[arguments]: Patch more shebangs, use custom build phase.
2017-08-07 13:37:28 +03:00
c97fbf55e7
gnu: texlive: Remove texlive-minimal.
...
This package is superseded by the modular TeX Live distribution.
* gnu/packages/tex.scm (texlive-minimal, texlive-texmf-minimal): Remove
variables.
2017-08-07 12:29:20 +02:00
1335167a3b
gnu: biber: Update to 2.7.
...
* gnu/packages/tex.scm (biber)[name]: Rename to 'biber'.
(biber-2.5): Remove variable.
2017-08-07 12:08:58 +02:00
149f668821
gnu: texlive: Update to 2017.
...
* gnu/packages/tex.scm (texlive, texlive-texmf): Update to 2017.
(texlive-texmf-src): Update to 20170524. Remove
'texlive-texmf-CVE-2016-10243.patch'.
(texlive-bin, texlive-extra-src): Update to 20170524.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 12:08:03 +02:00
83fef82b7c
gnu: cubicle: Fix evaluation.
...
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
cda20ee816
gnu: vapoursynth: Don't build on aarch64-linux.
...
* gnu/packages/video.scm (vapoursynth)[supported-systems]: Remove
aarch64-linux from the supported-systems.
2017-08-07 07:24:17 +03:00
74033bbcc3
gnu: youtube-dl: Update to 2017.08.06.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.06.
2017-08-07 05:28:34 +02:00
d8af4f6dde
gnu: ntfs-3g: Update to 2017.3.23.
...
* gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23.
[source]: Remove patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 02:01:34 +02:00
8bad0c0bbb
gnu: ntfs-3g: Use HTTPS for the home page as well.
...
* gnu/packages/linux.scm (ntfs-3g)[home-page]: Use HTTPS.
2017-08-07 02:01:33 +02:00
ea94aff7da
gnu: wimlib: Update to 1.12.0.
...
* gnu/packages/backup.scm (wimlib): Update to 1.12.0.
2017-08-07 02:01:32 +02:00
9d217d277e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Restore original hash.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Restore hash from before the tarball changed in place. It changed back.
This reverts commit fd40857938
2017-08-07 01:58:39 +02:00
46f3c8f289
gnu: khal: Don't propagate vdirsyncer.
...
* gnu/packages/calendar.scm (khal)[propagated-inputs]: Move vdirsyncer ...
[native-inputs]: ... here.
2017-08-06 16:58:03 -04:00
fd8f946379
gnu: python-icalendar: Update to 3.11.6.
...
* gnu/packages/python.scm (python-icalendar): Update to 3.11.6.
2017-08-06 16:58:02 -04:00
03776ebd36
gnu: mpg123: Update to 1.25.4.
...
* gnu/packages/mp3.scm (mpg123): Update to 1.25.4.
2017-08-06 16:58:02 -04:00
b0c95908c0
gnu: freedoom: Update to 0.11.3.
...
* gnu/packages/games.scm (freedoom): Update to 0.11.3.
[arguments]: Remove unnecessary "no" phase.
2017-08-06 14:13:07 -04:00
f7b60fdc36
gnu: deutex: Update to 5.0.0.
...
* gnu/packages/game-development.scm (deutex): Update to 5.0.0.
[source]: Change upstream URI.
[arguments]: Enable tests and restore normal "configure" and "install"
phases.
[native-inputs]: Add asciidoc.
2017-08-06 14:13:07 -04:00
403097d26d
gnu: Add motti.
...
* gnu/packages/motti.scm (motti): New variable.
2017-08-06 19:13:33 +03:00
b7ac10e6da
gnu: keepassx: Superseded by keepassxc.
...
* gnu/packages/password-utils.scm (keepassx)[properties]: New field.
2017-08-06 19:13:32 +03:00
99672f7b1d
gnu: Add keepassxc.
...
* gnu/packages/password-utils.scm (keepassxc): New variable.
2017-08-06 19:13:06 +03:00
3ea2eaa8f3
gnu: python-efl: Update to 1.20.0.
...
* gnu/packages/enlightenment.scm (python-efl): Update to 1.20.0.
[source]: Add alternate source uri.
[arguments]: Enable tests.
2017-08-06 18:13:09 +03:00
87cd1f5c2a
gnu: efl: Update to 1.20.1.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.1.
2017-08-06 18:13:05 +03:00
3bfee8ff02
gnu: make-u-boot-package: Don't unnecessarily cross-compile.
...
* gnu/packages/bootloaders.scm (make-u-boot-package)[native-inputs]: Only
use cross-gcc and cross-binutils if compiling for a different
architecture.
[arguments]: Only use cross compiling make-flags if cross compiling.
2017-08-06 18:13:03 +03:00
18c6a7b4c8
gnu: Add python-flask-httpauth.
...
* gnu/packages/python.scm (python-flask-httpauth, python2-flask-httpauth):
New variables.
2017-08-06 13:35:07 +02:00
abd8825f90
gnu: Add font-open-dyslexic.
...
* gnu/packages/fonts.scm (font-open-dyslexic): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:49:52 +05:30
799097e445
gnu: gnucash: Update to 2.6.17.
...
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.17.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:01:56 +05:30
f167595ba1
Merge branch 'master' into core-updates
2017-08-06 00:23:20 -04:00
e3df6938ac
gnu: libtasn1: Add replacement to fix CVE-2017-10790.
...
Based on commit 01a61d7040
2017-08-06 00:21:09 -04:00
01a61d7040
gnu: libtasn1: Fix CVE-2017-10790.
...
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05 20:17:53 -04:00
9833bcfc08
build: Allow mounting of entire disks.
...
* gnu/build/file-systems.scm (disk-partitions): Also return entire drives.
2017-08-05 18:49:33 +02:00
91d94e28ec
gnu: emacs-exwm-x: Do not set DISPLAY.
...
* gnu/packages/emacs.scm (emacs-exwm-x): Do not set DISPLAY. The issue has
been fixed upstream in exwm-0.15.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:58:58 +05:30
e78e38a4bb
gnu: emacs-exwm: Update to 0.15.
...
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.15.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:48:54 +05:30
7f171fdaad
gnu: git: Update to 2.14.0.
...
* gnu/packages/version-control.scm (git): Update to 2.14.0.
2017-08-05 14:07:43 +02:00
eedcfa704e
gnu: lftp: Update to 4.7.8.
...
* gnu/packages/ftp.scm (lftp): Update to 4.7.8.
2017-08-05 14:07:42 +02:00
3d5d87a3ae
gnu: Add cubicle.
...
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
a56bf101c6
gnu: perl: Work around more "dotless @INC" build issues.
...
* gnu/packages/web.scm (perl-www-curl)[arguments]: Add 'set-search-path'
phase.
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Augment
'configure' phase to set PERL5LIB.
* gnu/packages/image.scm (steghide)[arguments]: Add #:phases argument.
2017-08-05 00:31:26 +02:00
240d3ceff7
gnu: python-argcomplete: Add dependency on the full Bash.
...
Fixes a regression introduced in
704243e0c6
2017-08-05 00:31:26 +02:00
90ea83ee95
gnu: bluez: Work around test failure on ARM.
...
This aims to skip the segfaulting test at
<https://hydra.gnu.org/build/2195551 >.
* gnu/packages/linux.scm (bluez)[arguments]: Add #:make-flags
when (%current-system) is "armhf-linux".
2017-08-05 00:02:55 +02:00
1cec346232
gnu: php: Update to 7.1.8.
...
* gnu/packages/patches/gd-CVE-2017-7890.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04 18:58:33 +02:00
8d6c845d68
gnu: Add r-crosstalk.
...
* gnu/packages/web.scm (r-crosstalk): New variable.
2017-08-04 11:23:53 +02:00
a3cd23b639
gnu: Add r-shiny.
...
* gnu/packages/web.scm (r-shiny): New variable.
2017-08-04 11:23:53 +02:00
0b0aa76fa8
gnu: Add js-es5-shim.
...
* gnu/packages/javascript.scm (js-es5-shim): New variable.
2017-08-04 11:23:53 +02:00
4f65067bde
gnu: Add js-selectize.
...
* gnu/packages/javascript.scm (js-selectize): New variable.
2017-08-04 11:23:53 +02:00
c4abc94d2b
gnu: Add js-datatables.
...
* gnu/packages/javascript.scm (js-datatables): New variable.
2017-08-04 11:23:53 +02:00
a6bbb2a0d8
gnu: Add js-highlight.
...
* gnu/packages/javascript.scm (js-highlight): New variable.
2017-08-04 11:23:53 +02:00
3f48403aaf
gnu: Add js-strftime.
...
* gnu/packages/javascript.scm (js-strftime): New variable.
2017-08-04 11:23:52 +02:00
68ffb6c586
gnu: Add js-json2.
...
* gnu/packages/javascript.scm (js-json2): New variable.
2017-08-04 11:23:52 +02:00
ed69963b03
gnu: Add js-html5shiv.
...
* gnu/packages/javascript.scm (js-html5shiv): New variable.
2017-08-04 11:23:52 +02:00
b316caaa9c
gnu: python-lz4: Fix typo in synopsis.
...
* gnu/packages/compression.scm (python-lz4)[synopsis]: Fix typo.
2017-08-04 05:00:26 +02:00
e9f6a935fb
gnu: python-lz4: Update to 0.10.1.
...
* gnu/packages/compression.scm (python-lz4): Update to 0.10.1.
[native-inputs]: Add python-setuptools-scm.
2017-08-04 04:59:48 +02:00
54360c917e
gnu: diffoscope: Use HTTPS.
...
* gnu/packages/package-management.scm (diffoscope)[home-page]: Use HTTPS.
2017-08-04 04:34:41 +02:00
3b4018d6f2
gnu: sshoot: Update to 1.2.6.
...
* gnu/packages/vpn.scm (sshoot): Update to 1.2.6.
[home-page]: Update to new project home.
2017-08-04 04:34:41 +02:00
f58be41761
gnu: fabric: Update to 1.13.2.
...
* gnu/packages/admin.scm (fabric): Update to 1.13.2. Remove outdated comments.
[source]: Remove ‘patches’.
* gnu/packages/patches/fabric-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04 03:46:49 +02:00
19dd5097d9
gnu: certbot, python-acme: Update to 0.17.0.
...
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
2017-08-04 02:32:53 +02:00
9a7fd375a2
gnu: xonsh: Update to 0.5.12.
...
* gnu/packages/shells.scm (xonsh): Update to 0.5.12.
2017-08-04 02:06:39 +02:00
b55d15e795
gnu: cmark: Update to 0.28.0.
...
* gnu/packages/markup.scm (cmark): Update to 0.28.0.
2017-08-04 01:51:23 +02:00
0a3ecfd29c
gnu: thefuck: Update to 3.19.
...
* gnu/packages/admin.scm (thefuck): Update to 3.19.
2017-08-04 01:51:23 +02:00
30ac4cc7e6
gnu: zerofree: Update to 1.1.0.
...
* gnu/packages/linux.scm (zerofree): Update to 1.1.0.
[home-page, source]: Update from old, inaccessible location.
2017-08-04 01:51:22 +02:00
4de4a1cfcc
gnu: zerofree: Expand description.
...
* gnu/packages/linux.scm (zerofree)[description]: Expand.
2017-08-04 01:51:22 +02:00
7a068459ba
gnu: zerofree: Use ‘install-file’.
...
* gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase,
using ‘install-file’.
2017-08-04 01:51:21 +02:00
0f08917df3
gnu: zerofree: Use ‘modify-phases’ syntax.
...
* gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
2017-08-04 01:51:21 +02:00
20f8d1dd78
gnu: sshfs-fuse: Update to 2.10.
...
* gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
2017-08-04 01:51:20 +02:00
c89091459f
gnu: freerdp: Update to 2.0.0-rc0 [security fixes].
...
Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}.
Reported by Leo Famulari in <https://bugs.gnu.org/27939 >.
* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0.
[source]: Use tarball release. Adjust file-name.
[arguments]: Remove #:phases.
2017-08-04 00:52:52 +02:00
c9f4f56b24
gnu: git: Enable tests.
...
* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add
'patch-tests' phase.
2017-08-04 00:52:13 +02:00
81ca29a6d6
gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].
...
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03 18:06:19 -04:00
c8737b1e41
gnu: icedtea@3.5.0: Properly handle decoding error while substituting.
...
* gnu/packages/java.scm (icedtea-8)[arguments] <patch-jni-libs>: Change
'encoding-error to 'decoding-error, which is what Guile 2.2 raises when
failing to decode an input file.
2017-08-03 22:46:14 +02:00
9e37e537a2
gnu: Add missing references to (gnu packages cran).
...
This is a follow-up to commit a8cba9dd11
2017-08-03 22:15:57 +02:00
7cb6155088
gnu: bioinformatics.scm: Use (gnu packages cran) module.
...
This is a follow up to a8cba9dd11
2017-08-03 21:39:12 +03:00
cf189709bc
vm: Use grub-hybrid's grub-mkrescue.
...
* gnu/system/vm.scm (system-disk-image): Use grub-hybrid's grub-mkrescue.
* gnu/bootlader/grub.scm (grub-mkrescue-bootloader): New variable.
2017-08-03 18:13:03 +02:00
2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
ceb802a31c
gnu: r-desc: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
5e0de29892
gnu: r-seqminer: Update to 6.0.
...
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03 17:53:54 +02:00
4e0c847d59
gnu: r-wgcna: Update to 1.60.
...
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03 17:53:54 +02:00
c8a9b2bcbf
gnu: r-qtl: Update to 1.41-6.
...
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03 17:53:54 +02:00
023aa8ff58
gnu: r-seqinr: Update to 3.4-5.
...
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
2017-08-03 17:53:54 +02:00
7150f1c30c
gnu: r-optparse: Update to 1.4.4.
...
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
2017-08-03 17:53:53 +02:00
3f6ec083ec
gnu: r-bookdown: Update to 0.4.
...
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
2017-08-03 17:53:53 +02:00
85cd755417
gnu: r-tclust: Update to 1.2-7.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
...
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
...
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
...
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
41692b2963
gnu: r-mclust: Update to 5.3.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
...
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
...
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
d58faa7f44
gnu: r-rann: Update to 2.5.1.
...
* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
a8c2706de2
gnu: r-statmod: Update to 1.4.30.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
80d1185076
gnu: r-gdata: Update to 2.18.0.
...
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
81c057ced9
gnu: r-sparsem: Update to 1.77.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
76040b8561
gnu: r-readr: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
d8048a1212
gnu: r-withr: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
63f934e672
gnu: r-backports: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
c832d326a1
gnu: r-formula: Update to 1.2-2.
...
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
f05c6275b7
gnu: r-r6: Update to 2.2.2.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
b07c8c0156
gnu: r-knitr: Update to 1.16.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
6dc86e8dfc
gnu: r-formatr: Update to 1.5.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
12cd797541
gnu: r-evaluate: Update to 0.10.1.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
d5ce380711
gnu: r-dbi: Update to 0.7.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
831858a7d3
gnu: r-bit64: Update to 0.9-7.
...
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
74b037df64
gnu: r-foreign: Update to 0.8-69.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
af1eeabe89
gnu: r-boot: Update to 1.3-20.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
e584b9fc1b
gnu: r-curl: Update to 2.8.1.
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* gnu/packages/web.scm (r-curl): Update to 2.8.1.
2017-08-03 17:53:45 +02:00
53deffe5e9
gnu: r-htmlwidgets: Update to 0.9.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
2017-08-03 17:53:45 +02:00
850151058d
gnu: r-htmltools: Update to 0.3.6.
...
* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
2017-08-03 17:53:45 +02:00
a1e54db2ac
gnu: r-servr: Update to 0.6.
...
* gnu/packages/web.scm (r-servr): Update to 0.6.
2017-08-03 17:53:45 +02:00
9fe794f0f7
gnu: r-jsonlite: Update to 1.5.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
2017-08-03 17:53:45 +02:00
2d81bc16a9
gnu: r-httpuv: Update to 1.3.5.
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* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
2017-08-03 17:53:44 +02:00
0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
...
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
c628b8418a
gnu: r-ranger: Update to 0.8.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
f9b3760636
gnu: r-plotly: Update to 4.7.1.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
d59050823e
gnu: r-igraph: Update to 1.1.2.
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* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
aad948a0ea
gnu: r-tibble: Update to 1.3.3.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
4bb0b4cc0a
gnu: Add r-bindrcpp.
...
* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03 17:53:42 +02:00
eed58a0886
gnu: Add r-bindr.
...
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03 17:53:42 +02:00
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
736332c79c
gnu: r-rcpp: Update to 0.12.12.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
847b457253
gnu: r-plogr: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
5bee6bf409
gnu: Add r-glue.
...
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03 17:53:41 +02:00
dd4b7476ec
gnu: Add grub-hybrid.
...
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03 16:35:34 +02:00
75e6639f36
gnu: htseq: Use PyPI URI.
...
This is a follow-up to 92971d68ac
2017-08-03 21:08:13 +10:00
92971d68ac
gnu: htseq: Update to 0.9.1.
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* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1.
[arguments]: Use python-3 by removing field.
[native-inputs]: Add 'python-cython'.
[propagated-inputs]: Use python3 numpy package.
[inputs]: Use python3 pysam package. Add 'python-matplotlib'.
(python2-htseq): New variable.
(clipper)[inputs]: Use it.
2017-08-03 21:02:30 +10:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
...
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
5638d71502
gnu: openscenegraph: Add 'Release' configure flag.
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* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03 10:35:31 +03:00
68a29ab8d0
gnu: Add LeoCAD.
...
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03 00:33:02 -05:00
5d8312f1c6
gnu: youtube-dl: Update to 2017.07.30.1.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03 05:31:24 +02:00
6862c72373
gnu: tor: Update to 0.3.0.10.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-03 01:56:22 +02:00
49962b15a1
activation: Make sure /etc exists.
...
Fixes <http://bugs.gnu.org/27146 >.
Reported by ng0 <ng0@pragmatique.xyz>.
* gnu/build/activation.scm (activate-etc): Add call to 'mkdir-p'.
2017-08-03 00:35:59 +02:00
edd08fb7ac
gnu: glibc@2.22: Fix security issues.
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Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.22 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
...
* gnu/packages/base.scm (glibc@2.23 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
...
* gnu/packages/base.scm (glibc@2.24 )[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
2c5cf84430
gnu: python2-conda: Fix build by building with enum34.
...
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'.
[native-inputs]: Add python2-enum34.
2017-08-02 14:39:33 -04:00
9ef5940ce4
gnu: calibre: Add python2-msgpack as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
2017-08-02 20:20:12 +03:00
721d7a6912
gnu: gcc@4.7: Don't built on aarch64.
...
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]:
New field.
2017-08-02 19:14:26 +03:00
696f1d0fb1
gnu: libpng-apng: Be sure to apply the APNG patch.
...
* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of
the patching procedures.
2017-08-02 11:17:57 -04:00
e0958c2df8
gnu: libpng-apng: Update to 1.6.28.
...
Fixes <https://bugs.gnu.org/27556 >.
* gnu/packages/image.scm (libpng-apng): Update to 1.6.28.
Remove inherit of 'libpng'.
[version]: Use own version, remove 'package-version libpng'.
[source]: Don't inherit the source of libpng.
[arguments]: Update hash of libpng-apng source.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-02 11:10:31 -04:00
33485fa913
gnu: eyed3: Update to 0.8, build with python3.
...
* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8.
[arguments]: Disable tests; don't use python-2.
[propagated-inputs]: Add python-six and python-grako.
[native-inputs]: Remove.
2017-08-02 14:08:33 +02:00
a70b03d413
gnu: Add python-grako
...
* gnu/packages/python.scm (python-grako): New variable.
2017-08-02 14:08:33 +02:00
0abf526420
gnu: hdf4: Update to 4.12.13.
...
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
ced2d2b7ca
gnu: libvirt: Update to 3.6.0.
...
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
2017-08-02 07:15:21 +02:00
2e508b6dc0
gnu: libvirt: Use HTTPS.
...
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
2017-08-02 07:15:21 +02:00
2f06dc0435
gnu: Add r-rlang.
...
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
f1915a5dd0
gnu: r-deseq2: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
2017-08-02 00:33:23 +02:00
fd215c2978
gnu: r-annotationforge: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02 00:33:07 +02:00
bd4a0bab5f
gnu: r-category: Update to 2.42.1.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02 00:32:46 +02:00
0ff478344b
gnu: r-biocstyle: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02 00:32:31 +02:00
9c4348d8c4
gnu: r-dnacopy: Update to 1.50.1.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02 00:32:11 +02:00
3ec25eb2a8
gnu: r-iranges: Update to 2.10.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02 00:31:46 +02:00
6252dd0f15
gnu: r-genomeinfodb: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02 00:31:28 +02:00
48f5d283b2
gnu: r-variantannotation: Update to 1.22.3.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02 00:31:08 +02:00
1b4738e23c
gnu: r-limma: Update to 3.32.5.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02 00:30:49 +02:00
1898a7832f
gnu: r-biobase: Update to 2.36.2.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02 00:30:27 +02:00
62eb93a7d0
gnu: r-annotationdbi: Update to 1.38.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02 00:28:32 +02:00
0c6494a1db
gnu: r-biomart: Update to 2.32.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02 00:28:16 +02:00
1ff74d074e
gnu: r-biocparallel: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02 00:27:57 +02:00
5077bc3e2e
gnu: r-biostrings: Update to 2.44.2.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02 00:27:35 +02:00
adf5d0a0bc
gnu: r-delayedarray: Update to 0.2.7.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02 00:27:16 +02:00
f41150f13d
gnu: r-summarizedexperiment: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02 00:26:55 +02:00
26760c80cd
gnu: r-genomicalignments: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02 00:26:33 +02:00
15afa9bf8f
gnu: r-rtracklayer: Update to 1.36.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02 00:26:00 +02:00
8cfaa9ab4e
gnu: r-genomicfeatures: Update to 1.28.4.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02 00:25:26 +02:00
9eb2714625
gnu: r-copywriter: Update to 2.8.1.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02 00:25:00 +02:00
bfa0d1e773
gnu: r-sva: Update to 3.24.4.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02 00:24:27 +02:00
8060a61798
gnu: r-rsqlite: Update to 2.0.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
796237a9a4
gnu: Add r-blob.
...
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
aa184803f8
gnu: Add r-pkgconfig.
...
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
aa9780daf9
Merge branch 'master' into core-updates
2017-08-01 23:42:28 +02:00
fc8f0631b4
gnu: re2: Update to 2017-08-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
2017-08-01 23:37:20 +02:00
1926fd2baa
gnu: maim: Update to 5.4.66.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
2017-08-01 23:35:31 +02:00
7d960db1e3
gnu: slop: Update to 7.3.48.
...
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
2017-08-01 23:35:03 +02:00
b73e49f595
gnu: git: Update to 2.13.4.
...
* gnu/packages/version-control.scm (git): Update to 2.13.4.
2017-08-01 23:34:41 +02:00
14fce399cc
gnu: r-foreign: Update hash after upstream tarball change.
...
* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference
in the tarball is the metadata. The contents are identical.
2017-08-01 23:07:58 +02:00
cdf124c607
gnu: r-foreign: Remove duplicate recipe.
...
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01 23:06:02 +02:00
d0386db493
gnu: rapidjson: Update to 1.1.0.
...
* gnu/packages/web.scm (rapidjson): Update to 1.1.0.
[source]: Remove snippet.
2017-08-01 14:42:44 -04:00
f2e1271809
gnu: Add pidentd.
...
* gnu/packages/networking.scm (pidentd): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 20:57:51 +03:00
89c9445aa2
gnu: hyperrogue: Update to 10.0e.
...
* gnu/packages/games.scm (hyperrogue): Update to 10.0e.
[arguments]: Adjust accordingly.
2017-08-01 12:14:54 -04:00
d931a4bbeb
gnu: metabat: Limit to x86_64 and i686 only.
...
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
2017-08-01 17:28:35 +03:00
4bfdf034e2
gnu: Add emacs-yasnippet-snippets.
...
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:33:07 +02:00
1f0d47059d
gnu: emacs-yasnippet: Upgrade to 0.12.0.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0.
[source]: Remove an uninstalled directory from yas-snippet-dirs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:59 +02:00
04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2.
...
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01 15:32:07 +02:00
12235a124f
gnu: artanis: Unbundled guile-json and version according to documentation.
...
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version
according to documentation.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:07 +02:00
269504a797
gnu: python-pbr-minimal: Update to 3.0.1
...
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 15:21:52 +03:00
3d0fbd3c2f
gnu: libgit2: Enable SHA-1 collision detection.
...
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC'
in #:configure-flags.
2017-08-01 01:02:53 -04:00
befb2c0e6e
gnu: ruby-bio-commandeer: Update to 0.2.0.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
2017-08-01 14:09:07 +10:00
e1ecc8908e
gnu: libmicrohttpd: Update to 0.9.55.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55.
[arguments]: Add 'add-missing-LDFLAGS' phase.
2017-07-31 22:51:34 +02:00
a6b5af0cff
gnu: xf86-video-intel: Update snapshot.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa.
Introduce 'revision' variable.
2017-07-31 22:10:34 +02:00
f0732ee485
gnu: guile-bytestructures: Install .go files to lib/guile/X.Y.
...
* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go
files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache.
2017-07-31 17:36:24 +02:00
54727850c3
gnu: tor: Remove '--enable-expensive-hardening' option.
...
* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31 17:06:45 +02:00
ee217402f7
gnu: erlang: Update to 20.0.
...
* gnu/packages/erlang.scm (erlang): Update to 20.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31 17:02:36 +02:00
c27e02bf6b
gnu: network-manager: Add dependency on Newt.
...
Suggested by Mark H Weaver.
* gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT.
2017-07-31 15:23:06 +02:00
44b0faee6b
gnu: guile-git: Skip faulty tests on non-x86_64.
...
Reported by Mark H Weaver.
* gnu/packages/guile.scm (guile-git)[arguments]: Add 'skip-tests' phase
unless on x86_64-linux.
2017-07-31 15:23:06 +02:00
8ecba89b77
gnu: libgit2: Add "debug" output.
...
* gnu/packages/version-control.scm (libgit2)[outputs]: New field.
2017-07-31 15:23:06 +02:00
58dce7bfb5
gnu: libgit2: Update to 0.26.0.
...
* gnu/packages/version-control.scm (libgit2): Update to 0.26.0. Remove
"libgit2-use-after-free.patch".
* gnu/packages/patches/libgit2-use-after-free.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-31 15:23:05 +02:00
6ce8fe4cd0
gnu: efl: Add wayland support.
...
* gnu/packages/enlightenment.scm (efl)[inputs]: Add wayland-protocols.
Move mesa ...
[propagated-inputs]: ... to here. Add libinput, libxkbcommon, wayland.
[arguments]: Add flags to enable wayland, elput and drm.
2017-07-31 15:16:23 +03:00
0d3ecf77ba
gnu: gst-plugins-good: Update disable-failing-tests phase.
...
* gnu/packages/gstreamer.scm (gst-plugins-good)[arguments]: Change the
list of tests to disable during 'disable-failing-tests phase.
2017-07-31 15:16:21 +03:00
57f57a7bbf
services: ntp: Use the NTP pool via the 'guix' zone.
...
* gnu/services/networking.scm (%ntp-servers): Use *.guix.pool.ntp.org.
2017-07-30 20:21:36 -04:00
6484e82d4c
gnu: biber-next: Update to 2.7.
...
* gnu/packages/tex.scm (biber): Update to 2.7.
2017-07-30 20:10:43 -04:00
1fdf14e170
gnu: perl-datetime-timezone: Update to 2.13.
...
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.13.
[propagated-inputs]: Remove perl-params-validate. Add perl-namespace-autoclean,
perl-params-validationcompiler.
2017-07-30 20:10:43 -04:00
8ec0877a6b
gnu: perl-datetime-locale: Update to 1.16.
...
* gnu/packages/perl.scm (perl-datetime-locale): Update to 1.16.
[native-inputs]: Add perl-file-sharedir-install, perl-file-sharedir,
perl-test-file-sharedir-dist, perl-test-warnings, perl-test-requires,
perl-namespace-autoclean, perl-cpan-meta-check.
[propagated-inputs]: Add perl-params-validationcompiler. Remove
perl-params-validate.
2017-07-30 20:10:43 -04:00
e780fde515
gnu: perl-datetime-format-strptime: Update to 1.73.
...
* gnu/packages/perl.scm (perl-datetime-format-strptime): Update to 1.73.
[propagated-inputs]: Add perl-package-deprecationmanager, perl-params-validate,
perl-sub-name, perl-test-warnings.
2017-07-30 20:10:43 -04:00
09d94b2bab
gnu: perl-datetime-format-natural: Update to 1.05.
...
* gnu/packages/perl.scm (perl-datetime-format-natural: Update to 1.05.
2017-07-30 20:10:42 -04:00
9e5df71e7d
gnu: perl-datetime-format-flexible: Update to 0.28.
...
* gnu/packages/perl.scm (perl-datetime-format-flexible): Update to 0.28.
2017-07-30 20:10:42 -04:00
dc8e21110a
gnu: perl-datetime-event-recurrence: Update to 0.19.
...
* gnu/packages/perl.scm (perl-datetime-event-recurrence): Update to 0.19.
2017-07-30 20:10:42 -04:00
ff3034de5d
gnu: perl-datetime-event-local: Update to 0.13.
...
* gnu/packages/perl.scm (perl-datetime-event-local): Update to 0.13.
2017-07-30 20:10:42 -04:00
d388e4e292
gnu: perl-datetime-set: Update to 0.3900.
...
* gnu/packages/perl.scm (perl-datetime-set): Update to 0.3900.
2017-07-30 20:10:41 -04:00
3404803057
gnu: perl-datetime: Update to 1.43.
...
* gnu/packages/perl.scm (perl-datetime): Update to 1.43.
[native-inputs]: Add perl-cpan-meta-check.
[propagated-inputs]: Add perl-file-sharedir.
2017-07-30 20:10:41 -04:00
7ab1833598
gnu: perl-file-sharedir-install: Update to 0.11.
...
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.11.
[native-inputs]: Add perl-module-build.
2017-07-30 20:10:41 -04:00
1c0c608566
gnu: perl-file-sharedir: Update to 1.104.
...
* gnu/packages/perl.scm (perl-file-sharedir): Update to 1.104.
2017-07-30 20:10:41 -04:00
ed9543c0ed
gnu: perl-cpan-meta-check: Update to 0.014.
...
* gnu/packages/perl.scm (perl-cpan-meta-check): Update to 0.014.
2017-07-30 20:10:41 -04:00
ccb38cdc8d
gnu: Add perl-params-validationcompiler.
...
* gnu/packages/perl.scm (perl-params-validationcompiler): New variable.
2017-07-30 20:10:40 -04:00
00ace88396
gnu: Add perl-test-file-sharedir-dist.
...
* gnu/packages/perl.scm (perl-test-file-sharedir-dist): New variable.
2017-07-30 20:10:40 -04:00
a4d6a95793
gnu: Add perl-test2-plugin-nowarnings.
...
* gnu/packages/perl.scm (perl-test2-plugin-nowarnings): New variable.
2017-07-30 20:10:40 -04:00
9ad78b2c21
gnu: Add perl-test2-bundle-extended.
...
* gnu/packages/perl.scm (perl-test2-bundle-extended): New variable.
2017-07-30 20:10:40 -04:00
721fd17797
gnu: Add perl-sub-info.
...
* gnu/packages/perl.scm (perl-sub-info): New variable.
2017-07-30 20:10:40 -04:00
6d6646f932
gnu: Add perl-term-table.
...
* gnu/packages/perl.scm (perl-term-table): New variable.
2017-07-30 20:10:39 -04:00
b51f02a949
gnu: Add perl-specio.
...
* gnu/packages/perl.scm (perl-specio): New variable.
2017-07-30 20:10:39 -04:00
df4fc5217f
gnu: Add perl-importer.
...
* gnu/packages/perl.scm (perl-importer): New variable.
2017-07-30 20:10:39 -04:00
13d73c42f9
gnu: Add perl-file-sharedir-dist.
...
* gnu/packages/perl.scm (perl-file-sharedir-dist): New variable.
2017-07-30 20:10:35 -04:00
706448b193
gnu: automake: Add 1.15.1.
...
* gnu/packages/autotools.scm (automake/latest): New variable.
2017-07-30 22:31:10 +02:00
c91171627b
gnu: guix: Search .go files of dependencies in lib/guile/.
...
* gnu/packages/package-management.scm (guix)[arguments]: Add (srfi
srfi-26) to #:modules. Introduce 'gopath', distinct from 'path'.
2017-07-30 21:36:18 +02:00
1c0ee79d4d
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to 228a398
2017-07-30 17:58:04 +02:00
1398a43816
services: openssh: Extensions provide extra authorized keys.
...
* gnu/services/ssh.scm (extend-openssh-authorized-keys): New procedure.
(openssh-service-type)[compose, extend]: New fields.
* doc/guix.texi (Networking Services): Document the extension.
2017-07-30 16:23:19 +02:00
4892eb7c6a
services: openssh: Add 'authorized-keys' field.
...
* gnu/services/ssh.scm (<openssh-configuration>)[authorized-keys]: New
field.
(authorized-key-directory): New procedure.
(openssh-config-file): Honor 'authorized-keys'.
(openssh-activation): Use 'with-imported-modules'. Make /etc/ssh
755. Create /etc/ssh/authorized_keys.d.
* doc/guix.texi (Networking Services): Document it.
2017-07-30 16:23:19 +02:00
75bddb13eb
services: cuirass: Set 'GIT_SSL_CAINFO' and 'GIT_EXEC_PATH'.
...
Reported by Ricardo Wurmus.
* gnu/services/cuirass.scm (cuirass-shepherd-service): Pass
#:environment-variables.
2017-07-30 16:23:19 +02:00
9dab50179a
gnu: perl: Add missing dependencies on Module::Install.
...
Perl 5.26 and later does not provide this module.
* gnu/packages/databases.scm (perl-sql-abstract)[native-inputs]: Add PERL-MODULE-INSTALL.
* gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast,
perl-file-zglob, perl-object-signature, perl-test-utf8, perl-time-duration,
perl-benchmark-timer, perl-class-accessor-grouped,
perl-class-c3-componentised, perl-term-encoding)[native-inputs]: Likewise.
* gnu/packages/web.scm (perl-http-parser-xs, perl-uri-template,
perl-www-curl)[native-inputs]: Likewise.
* gnu/packages/xml.scm (perl-xml-atom)[native-inputs]: Likewise.
2017-07-30 14:55:27 +02:00
c918773a03
gnu: ffmpeg: Update to 3.3.3.
...
* gnu/packages/video.scm (ffmpeg): Update to 3.3.3.
2017-07-30 12:49:38 +02:00
fa65e84aab
gnu: qemu: Build with support for Linux AIO
...
Add libaio as an input, such that QEMU is built with support for Asynchronous
I/O (AIO).
* gnu/packages/virtualization.scm (qemu)[inputs]: Uncomment libaio.
2017-07-30 09:56:00 +01:00
119fdd0d0e
services: Add memcached.
...
* gnu/services/databases.scm (memcached-service-type, %memcached-accounts):
New variables.
(<memcached-configuration>): New record type.
(memcached-service-type): New procedures.
* gnu/tests/databases.scm: New file.
* doc/guix.texi (Database Services): Document the new memcached service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add entry for tests/databases.scm.
2017-07-30 09:08:30 +01:00
686144e986
gnu: Add memcached.
...
* gnu/packages/databases.scm (memcached): New variable.
2017-07-30 09:06:52 +01:00
c00c90ca37
gnu: retroarch: Update to 1.6.3.
...
* gnu/packages/games.scm (retroarch): Update to 1.6.3.
2017-07-30 15:15:34 +08:00
85cdab64c6
gnu: yosys: Add dependency on z3.
...
* gnu/packages/fpga.scm (yosys): Add z3 to propagated-inputs.
2017-07-29 23:03:47 +02:00
313844d9dc
gnu: Add z3.
...
* gnu/packages/maths.scm (z3): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
a4078acf4a
gnu: erlang: Fix man-pages search path of 'erl -man'.
...
* gnu/packages/patches/erlang-man-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/erlang.scm (erlang)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
53ac6977ac
gnu: tome4: Clean up snippet.
...
* gnu/packages/games.scm (tome4)[source](snippet): Use a single
'substitute*' call instead of 'for-each'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
baa6b77789
gnu: vim: Update to 8.0.0808.
...
* gnu/packages/vim.scm (vim): Update to 8.0.0808.
[arguments]: Remove obsolete 'make-bit-reproducable' phase.
(vim-full): Update to 8.0.0808.
[arguments]: Remove 'drop-failing-tests' phase.
2017-07-29 23:01:17 +02:00
24b115dff5
gnu: emacs: Check GUIX_ENVIRONMENT when autoloading packages.
...
Check the environment profile so that we autoload packages that are given as
arguments to "guix environment" but are not in the system or user profile.
Note that the union of Emacs packages in the system, user, and environment
profiles will be autoloaded even when --pure was passed to "guix environment",
because it's not clear how to detect that --pure was given.
* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages):
Add Emacs packages from GUIX_ENVIRONMENT profile.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:17 +03:00
d0a5205292
gnu: Remove emacs-seq.
...
The seq.el library has been included with Emacs since version 25.1.
* gnu/packages/emacs.scm (emacs-seq): Remove variable.
(flycheck, emacs-cider)[propagated-inputs]: Remove emacs-seq.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:17 +03:00
469c7ce058
gnu: Remove let-alist.
...
The let-alist package has been included with Emacs since version 25.1.
* gnu/packages/emacs.scm (let-alist): Remove variable.
(flycheck, emacs-pdf-tools, emacs-sx)[propagated-inputs]: Remove let-alist.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:16 +03:00
b1a6a70684
gnu: emacs-ess: Install elisp files in "guix.d".
...
Fixes <http://bugs.gnu.org/27686 >.
Reported by Adonay Felipe Nogueira <adfeno@openmailbox.org>.
* gnu/packages/emacs.scm (emacs-ess)[arguments]: Add LISPDIR to
'make-flags' to install *.el files into "guix.d" sub-directory.
2017-07-29 23:18:56 +03:00
444f9dccc2
gnu: grub-efi: Add mtools input.
...
* gnu/packages/bootloaders.scm: Add (gnu packages mtools).
(grub-efi)[inputs]: Add mtools.
[arguments]: Add phase "use-absolute-mtools-path".
2017-07-29 19:24:04 +02:00
303690c405
gnu: Add coq-interval.
...
* gnu/packages/ocaml.scm (coq-interval): New variable.
2017-07-29 15:19:07 +02:00
b09c4244f7
gnu: Add coq-coquelicot.
...
* gnu/packages/ocaml.scm (coq-coquelicot): New variable.
2017-07-29 15:19:03 +02:00
380c65de94
gnu: Add coq-mathcomp.
...
* gnu/packages/ocaml.scm (coq-mathcomp): New variable.
2017-07-29 15:18:59 +02:00
88191acee2
gnu: Add coq-gappa.
...
* gnu/packages/ocaml.scm (coq-gappa): New variable.
2017-07-29 15:18:54 +02:00
d163d97d92
gnu: Add coq-flocq.
...
* gnu/packages/ocaml.scm (coq-flocq): New variable.
2017-07-29 15:18:45 +02:00
8f82110492
gnu: gnupg: Update to 2.1.22.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.22.
2017-07-29 14:47:24 +02:00
a9085f0c5c
gnu: metabat: Update to 2.11.2.
...
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.2.
2017-07-29 22:37:47 +10:00
0e016722ee
gnu: mes: Update to 0.9.
...
* gnu/packages/mes.scm (mes): Update to 0.9.
[arguments]: Delete `strip' phase.
[synopsis]: Rewrite to be more descriptive.
[description]: Include expanded acronym.
2017-07-29 14:33:19 +02:00
9f9b7a0d01
gnu: gptfdisk: Update to 1.0.3.
...
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.3.
2017-07-29 14:15:48 +02:00
730ed6ec8b
gnu: services: admin: Add tailon.
...
* gnu/services/admin.scm
(<tailon-configuration>, <tailon-configuration-file>): New record types.
(tailon-configuration-files-string, tailon-shepherd-service): New
procedures.
(%tailon-accounts, tailon-service-type: New variables.
* doc/guix.texi (Monitoring Services: Document the Tailon service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/admin.scm.
* gnu/tests/admin.scm: New file.
2017-07-29 12:45:03 +01:00
b5244fcb49
gnu: arandr: Remove make-xrandr-available phase.
...
wrap-program functionality is already provided by python-build-system.
* gnu/packages/xdisorg.scm (arandr): Remove make-xrandr-available phase.
2017-07-29 16:47:37 +05:30
e8d9a87862
gnu: Add emacs-rpm-spec-mode.
...
* gnu/packages/emacs.scm (emacs-rpm-spec-mode): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-07-29 16:41:34 +05:30
3b56776fb8
gnu: mescc-tools: Update to 0.2.
...
* gnu/packages/mes.scm (mescc-tools): Update to 0.2.
2017-07-29 11:37:04 +02:00
38ba8a6116
gnu: linux-libre: Update to 4.12.4.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.4.
(%linux-libre-hash): Update hash.
2017-07-28 21:08:51 -04:00
dfa0c66cc9
gnu: linux-libre@4.9: Update to 4.9.40.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.40.
2017-07-28 21:08:19 -04:00
6b96478c6d
gnu: linux-libre@4.4: Update to 4.4.79.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.79.
2017-07-28 21:07:31 -04:00
4f9dd97e65
gnu: sssd: Update to 1.15.3.
...
* gnu/packages/sssd.scm (sssd): Update to 1.15.3.
[native-inputs]: Add util-linux.
2017-07-29 01:08:17 +02:00
d02e19aa2c
gnu: bind: Update to 9.11.2.
...
* gnu/packages/dns.scm (isc-bind): Update to 9.11.2.
2017-07-29 00:32:00 +02:00
32c4a5060e
gnu: emacs-auctex: Update to 11.91.0.
...
* gnu/packages/emacs.scm (emacs-auctex): Update to 11.91.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-28 23:30:41 +02:00
1f88f189eb
gnu: Add tome4.
...
* gnu/packages/games.scm (tome4): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-28 23:30:41 +02:00
1975c754f4
bootloader: Use <menu-entry> for the bootloader side.
...
* gnu/bootloader.scm (menu-entry-device-mount-point): New variable. Export it.
(<menu-entry>: New field "device".
* gnu/bootloader/grub.scm (grub-confgiuration-file): Handle <menu-entry>
entries.
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Handle
<menu-entry> entries.
* gnu/system.scm (menu->entry->boot-parameters): Delete variable.
(boot-parameters->menu-entry): New variable. Export it.
(operating-system-bootcfg): Make OLD-ENTRIES a list of <menu-entry>.
* guix/script/system.scm (reinstall-bootloader): Fix bootcfg usage.
(perform-action): Fix bootcfg usage.
2017-07-28 21:56:18 +02:00
9ca8aa38ec
gnu: guix: Add dependency on Guile-Git.
...
* gnu/packages/package-management.scm (guix)[arguments] <wrap-program>:
Add Guile-Git to PATH.
[propagated-inputs]: Add GUILE-GIT.
(guile2.0-guix)[propagated-inputs]: Add GUILE2.0-GIT.
2017-07-28 18:09:44 +02:00
3a53759807
gnu: guile-git: Update snapshot.
...
* gnu/packages/guile.scm (guile-git): Update to commit e156a10.
[native-inputs]: Add TEXINFO.
2017-07-28 18:09:43 +02:00
6f0f55148d
gnu: le-certs: Create OpenSSL hash symlinks.
...
* gnu/packages/certs.scm (le-certs)[arguments]: Run 'c_rehash' on the
result.
[native-inputs]: New fields.
2017-07-28 18:09:43 +02:00
c4b006ba12
gnu: btrfs-progs: Update to 4.12.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.12.
[outputs]: Remove inaccurate comment on size.
2017-07-28 16:32:04 +02:00
f112bd26ae
gnu: redis: Update to 4.0.1.
...
* gnu/packages/databases.scm (redis): Update to 4.0.1.
2017-07-28 21:10:49 +10:00
ac01cb0790
gnu: ruby-json-pure: Update to 2.1.0.
...
* gnu/packages/ruby.scm (ruby-json-pure): Update to 2.1.0.
[arguments]: Replace 'replace-git-ls-files' phase with 'fix-rakefile'
and 'regenerate-gemspec' phases.
[inputs]: Remove ruby-permutation, ruby-utils, ragel. Add ruby-test-unit,
ruby-simplecov.
2017-07-28 20:18:53 +10:00
9c14bc7a4d
gnu: bundler: Update to 1.15.3.
...
* gnu/packages/ruby.scm (bundler): Update to 1.15.3.
2017-07-28 20:18:53 +10:00
a2a558147a
gnu: ruby-ffi: Update to 1.9.18.
...
* gnu/packages/ruby.scm (ruby-ffi): Update to 1.9.18.
2017-07-28 20:18:52 +10:00
00eeb45fca
gnu: redis: Update to 4.0.0.
...
* gnu/packages/databases.scm (redis): Update to 4.0.0.
2017-07-28 20:18:52 +10:00
efb94fda64
gnu: ruby-nokogiri: Update to 1.8.0.
...
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.8.0.
2017-07-28 20:18:52 +10:00
26f4a37736
gnu: ruby-mini-portile2: Update to 2.2.0.
...
* gnu/packages/ruby.scm (ruby-mini-portile2): Update to 2.2.0.
2017-07-28 20:18:51 +10:00
4685866a94
gnu: perl-xs-object-magic: Fix build with perl@5.26.
...
* gnu/packages/perl.scm (perl-xs-object-magic)[native-inputs]: Add
PERL-MODULE-INSTALL.
2017-07-28 01:31:15 +02:00
5890b40bd0
gnu: perl-mousex-nativetraits: Fix build with perl@5.26.
...
* gnu/packages/perl.scm (perl-mousex-nativetraits)[native-inputs]: Add
PERL-MODULE-INSTALL.
2017-07-28 01:31:15 +02:00
ec5c986e33
gnu: perl-anyevent-i3: Update to 0.17.
...
* gnu/packages/wm.scm (perl-anyevent-i3): Update to 0.17.
2017-07-28 01:31:15 +02:00
0f6cf5a61c
gnu: nautilus: Update to 3.24.2.1.
...
* gnu/packages/gnome.scm (nautilus): Update to 3.24.2.1.
2017-07-28 01:02:40 +02:00
73fe4552aa
gnu: gptfdisk: Update description.
...
* gnu/packages/disk.scm (gptfdisk): Remove outdated statement and use @dfn.
2017-07-28 01:02:39 +02:00
0193e3be53
gnu: goffice: Update to 3.24.2.1.
...
* gnu/packages/gnome.scm (goffice): Update to 3.24.2.1.
2017-07-28 01:02:39 +02:00
c8fc9a379b
gnu: shotwell: Update to 0.26.2.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.26.2.
2017-07-28 01:02:39 +02:00
e0b9e377f1
Merge branch 'master' into core-updates
2017-07-28 00:34:13 +02:00
fb2715720a
gnu: whois: Update to 5.2.17.
...
* gnu/packages/networking.scm (whois): Update to 5.2.17.
2017-07-28 00:07:45 +02:00
bd51224936
gnu: nss, nss-certs: Update to 3.32.
...
This release includes minor code changes and many certificate updates:
<https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes >
* gnu/packages/certs.scm (nss-certs): Update to 3.32.
* gnu/packages/gnuzilla.scm (nss): Update to 3.32.
[arguments]: Prevent another test file from being installed.
* gnu/packages/patches/nss-pkgconfig.patch: Adjust.
2017-07-28 00:07:28 +02:00
201c0e7276
gnu: perl-gd-securityimage: Fix build with Perl 5.26.0.
...
* gnu/packages/gd.scm (perl-gd-securityimage)[arguments]: Set
PERL_USE_UNSAFE_INC in new 'set-env' phase.
2017-07-27 16:22:18 -04:00
70629b6d9a
gnu: perl-feed-find: Fix build with Perl 5.26.0.
...
* gnu/packages/web.scm (perl-feed-find)[arguments]: Set PERL_USE_UNSAFE_INC in
new 'set-env' phase.
2017-07-27 16:22:17 -04:00
6571754462
gnu: nspr: Update to 4.16.
...
* gnu/packages/gnuzilla.scm (nspr): Update to 4.16.
2017-07-27 22:15:27 +02:00
90335ccea6
gnu: python-cryptography: Update to 2.0.2.
...
* gnu/packages/python.scm (python-cryptography-vectors, python-cryptography):
Update to 2.0.2.
2017-07-27 22:15:26 +02:00
f27954a077
gnu: perl-encode-hanextra: Fix build with Perl 5.26.0.
...
* gnu/packages/perl.scm (perl-encode-hanextra)[arguments]: Set
PERL_USE_UNSAFE_INC in new 'set-env' phase.
2017-07-27 16:14:54 -04:00
b2973d9634
gnu: subversion: Update to 1.8.18.
...
* gnu/packages/version-control.scm (subversion): Update to 1.8.18.
2017-07-27 14:33:32 -04:00
6d31c175b2
gnu: net-tools: Update to 1.60-0.479bb4a7.
...
This leaves net-tools-for-tests unchanged.
Fixes <https://bugs.gnu.org/27811 >.
* gnu/packages/linux.scm (net-tools): Update to 1.60-0.479bb4a7.
[source]: Use git-fetch.
[inputs]: Remove the Debian patch.
[arguments]: Use modify-phases. Remove the 'patch' phase. Disable
SELINUX and AFBLUETOOTH from build configuration.
2017-07-27 13:39:42 -04:00
412701b0e5
services: guix-publish: Run in a UTF-8 locale.
...
Works around <https://bugs.gnu.org/26948 >.
* gnu/services/base.scm (guix-publish-shepherd-service): Pass
#:environment-variables to 'make-forkexec-constructor'.
2017-07-27 14:51:03 +02:00
138fe41198
system: Add 'grep --color' alias in '.bash_profile' skeleton.
...
* gnu/system/shadow.scm (default-skeletons)[profile]: Add 'grep' alias.
2017-07-27 14:44:28 +02:00
a812aff99c
gnu: gzochi: Update to 0.11.1.
...
* gnu/packages/game-development.scm (gzochi): Update to 0.11.1.
(gzochi)[arguments]: Remove patch for `-Werror', which is no longer
necessary.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-27 11:47:51 +02:00
f1be6f5b5a
gnu: openmpi: Add "static" output.
...
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
2017-07-27 11:47:50 +02:00
dd54d3d5da
gnu: po4a: Work around "dotless @INC" build issues.
...
* gnu/packages/gettext.scm (po4a)[arguments]: Add build phase
"set-search-path".
2017-07-27 10:20:23 +02:00
8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
2017-07-27 10:04:09 +02:00
620b0468e9
gnu: Add cowsay.
...
* gnu/packages/games.scm (cowsay): New variable.
2017-07-27 10:03:37 +02:00
56ab0f0c6d
gnu: nnn: Update to 1.3.
...
* gnu/packages/admin.scm (nnn): Update to 1.3.
2017-07-27 05:03:33 +02:00
efcacc17c7
gnu: openmpi: Enable SGE support.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
#:configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
217ce5702c
gnu: mg: Add new phase to find 'diff'.
...
* gnu/packages/text-editors.scm (mg)[phases]: Add new 'correct-location-of-difftool'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
bcd1544dd2
gnu: mg: Fetch source via HTTPS.
...
* gnu/packages/text-editors.scm (mg)[source]: Use HTTPS.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
1a5a8afea0
gnu: mg: Update to 20170401.
...
* gnu/packages/text-editors.scm (mg): Update to 20170401.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
9ea61b1c6f
gnu: Add python-flask-principal.
...
* gnu/packages/python.scm (python-flask-principal, python2-flask-principal):
New variables.
2017-07-26 21:52:30 +02:00
9d9fc39946
gnu: Add lziprecover.
...
* gnu/packages/compression.scm (lziprecover): New variable.
2017-07-26 19:38:59 +02:00
f96dbf6b70
gnu: net-tools: Add a test-only variant and use it for GnuTLS.
...
* gnu/packages/linux.scm (net-tools-for-tests): Add hidden net-tools variant.
* gnu/packages/tls.scm (gnutls)[native-inputs]: Use net-tools-for-tests instead
of net-tools.
2017-07-26 12:06:52 -04:00
d39238cf3d
gnu: synfig: Fix boost build error.
...
* gnu/packages/animation.scm (synfig)[arguments]: Add phase
"fix-boost-build-error".
2017-07-26 12:27:12 +02:00
bcd757fdb4
gnu: mg: Move to (gnu packages text-editors).
...
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
2017-07-26 11:11:11 +02:00
a5130d10fa
gnu: Add fcgiwrap service.
...
* doc/guix.texi (Web Services): Add documentation.
* gnu/services/web.scm (<fcgiwrap-configuration>): New record type.
(fcgiwrap-accounts, fcgiwrap-shepherd-service): New service extensions.
(fcgiwrap-service-type): New service type.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 11:00:04 +02:00
1cae188e61
gnu: glpk: Update to 4.63.
...
* gnu/packages/maths.scm (glpk): Update to 4.63.
2017-07-26 10:15:54 +03:00
360f692783
gnu: perl-anyevent: Update to 7.14.
...
* gnu/packages/libevent.scm (perl-anyevent): Update to 7.14.
2017-07-26 09:31:30 +03:00
4f038621a5
gnu: leafpad: Use glib-or-gtk build-system.
...
* gnu/packages/text-editors.scm (leafpad): Use glib-or-gtk build-system.
2017-07-26 08:19:47 +02:00
ff4192ff57
gnu: claws-mail: Disable (duplicate) Gtk+ icon cache generation.
...
* gnu/packages/mail.scm (claws-mail)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
2017-07-26 08:18:46 +02:00
8ad40a69d1
gnu: evince: Update to 3.24.1.
...
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-25 18:41:05 -04:00
980fe414c1
gnu: hplip: Update to 3.17.7.
...
* gnu/packages/cups.scm (hplip): Update to 3.17.7.
2017-07-25 23:59:21 +02:00
ae03ee4274
gnu: fdisk: Update to 2.0.0a1.
...
* gnu/packages/disk.scm (fdisk): Update to 2.0.0a1.
[arguments]: Make sure the build finds its own headers.
2017-07-25 23:58:34 +02:00
aa588d8a38
gnu: sdparm: Update to 1.10.
...
* gnu/packages/disk.scm (sdparm): Update to 1.10.
2017-07-25 23:58:34 +02:00
af79852c99
gnu: neofetch: Fix search path.
...
* gnu/packages/admin.scm (neofetch): Fix "No such file or directory" for distro logo.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-25 23:07:37 +02:00
16fb1e79ca
gnu: chess: Update to 6.2.5.
...
* gnu/packages/games.scm (chess): Update to 6.2.5.
2017-07-25 23:07:37 +02:00
4eacb47de0
gnu: feh: Update to 2.19.1.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.19.1.
2017-07-25 22:58:43 +02:00
5f02ea1a6d
gnu: notmuch: Update to 0.25.
...
* gnu/packages/mail.scm (notmuch): Update to 0.25.
2017-07-25 22:58:43 +02:00
4fdab17371
gnu: python2-urwid: Actually build urwid for Python 2.
...
* gnu/packages/python.scm (python2-urwid)[arguments]: Add #:python.
2017-07-25 15:29:29 -04:00
e9f468dfcd
gnu: tcpdump: Update to 4.9.1 [fixes CVE-2017-11108].
...
* gnu/packages/admin.scm (tcpdump): Update to 4.9.1.
2017-07-25 15:25:44 -04:00
90062885b7
gnu: you-get: Update to 0.4.803.
...
* gnu/packages/video.scm (you-get): Update to 0.4.803.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-25 14:44:19 -04:00
c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788.
...
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
2017-07-25 14:11:20 -04:00
bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0.
...
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:10:08 +02:00
1f9bff4152
gnu: openmpi: Update to 1.10.7.
...
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:09:27 +02:00
70bc608503
gnu: Add guile2.0-git.
...
* gnu/packages/guile.scm (guile2.0-git): New variable.
2017-07-25 17:46:17 +02:00
726ecfeb3a
gnu: Add guile2.0-bytestructures.
...
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
2017-07-25 17:46:17 +02:00
0093b1262b
gnu: maxima: Ensure binutils are available at runtime.
...
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
2017-07-25 07:58:55 -04:00
6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime."
...
This reverts commit f2fa86cc825ea8dbf0c9
2017-07-25 07:58:46 -04:00
5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime.
...
* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
2017-07-25 07:58:06 -04:00
ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes].
...
Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
2017-07-25 07:32:25 -04:00
a84ea2191e
system: Add a default '.guile' skeleton.
...
* gnu/system/shadow.scm (default-skeletons): Add ".guile".
2017-07-25 12:23:26 +02:00
5b4a6ba044
gnu: xterm: Update to 330.
...
* gnu/packages/xorg.scm (xterm): Update to 330.
2017-07-24 22:54:18 -04:00
0e8fed86d8
gnu: dialog: Update to 1.3-20170509.
...
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
2017-07-24 22:54:15 -04:00
fce8285e4b
gnu: opus: Update to 1.2.1.
...
* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
2017-07-24 17:37:05 -04:00
f6062e5432
gnu: perl-data-dumper-concise: Update to 2.023.
...
* gnu/packages/perl.scm (perl-data-dumper-concise): Update to 2.023.
[source]: Update source uri.
2017-07-24 22:35:11 +03:00
1627ca0494
gnu: perl-context-preserve: Update to 0.02.
...
* gnu/packages/perl.scm (perl-context-preserve): Update to 0.02.
2017-07-24 22:35:09 +03:00
d61a894bfa
gnu: gnome: Add deja-dup.
...
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
2017-07-24 20:05:49 +01:00
dc4f697f01
gnu: python-pexpect: Add dependency on the full Bash.
...
Fixes a regression introduced in
704243e0c6
2017-07-24 17:24:17 +02:00
3e6add96c5
gnu: gnome-mime-data: Do not use the bundled intltool.
...
* gnu/packages/gnome.scm (gnome-mime-data)[arguments]: New field.
2017-07-24 17:11:30 +02:00
23212bf9e6
gnu: perl: Work around "dotless @INC" build issues.
...
* gnu/packages/perl.scm (perl-task-weaken)[arguments]: New field.
(perl-unicode-normalize): Likewise.
* gnu/packages/web.scm (perl-http-server-simple)[arguments]: Add #:phases.
2017-07-24 16:36:13 +02:00
e2f24597a9
gnu: perl-regexp-common: Update to 2017060201.
...
* gnu/packages/perl.scm (perl-regexp-common): Update to 2017060201.
2017-07-24 16:33:54 +02:00
c022e11187
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to f1ddfe4
2017-07-24 12:25:08 +02:00
f1ddfe4f14
gnu: python-flaky: Fix Texinfo markup in description.
...
* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
2017-07-24 12:05:53 +02:00
e081e2dd0b
Merge branch 'master' into core-updates
2017-07-23 19:06:49 -04:00
2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc
2017-07-23 19:05:37 -04:00
5391c6c9d2
gnu: bind: Update to 9.11.1-P3.
...
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c
2017-07-23 19:05:37 -04:00
c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses).
...
This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).
* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading
indentation. Add (gnu packages linux) to the module imports.
2017-07-23 17:04:51 -04:00
fd900d68a5
gnu: Add support for aarch64's compiled kernel.
...
* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
2017-07-23 23:33:18 +03:00
826adfdb37
gnu: Add xf86-video-freedreno.
...
* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
2017-07-23 23:33:17 +03:00
4adeb3f6e6
gnu: Add u-boot-odroid-c2.
...
* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
2017-07-23 23:33:16 +03:00
1313628339
gnu: u-boot: Update to 2017.07.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
2017-07-23 23:33:13 +03:00
846cb73865
gnu: tevent: Update to 0.9.33.
...
* gnu/packages/samba.scm (tevent): Update to 0.9.33.
2017-07-23 22:01:29 +02:00
85a5800e52
gnu: talloc: Update to 2.1.10.
...
* gnu/packages/samba.scm (talloc): Update to 2.1.10.
2017-07-23 22:01:29 +02:00
fbed150133
gnu: ldb: Update to 1.1.31.
...
* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
2017-07-23 22:01:28 +02:00
17c3f1fb67
gnu: cmocka: Update to 1.1.1.
...
* gnu/packages/check.scm (cmocka): Update to 1.1.1.
2017-07-23 22:01:28 +02:00
38bb9df150
gnu: tdb: Update to 1.3.14.
...
* gnu/packages/databases.scm (tdb): Update to 1.3.14.
2017-07-23 22:01:28 +02:00
09efef3384
gnu: python-scipy: Update to 0.19.1.
...
* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
71d20587a5
gnu: python-matplotlib: Update to 2.0.2.
...
* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0.
...
* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
2017-07-23 22:01:27 +02:00
007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax.
...
* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
2017-07-23 22:01:27 +02:00
6e864d0081
gnu: Add xmobar.
...
gnu/packages/wm.scm (xmobar): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-23 15:29:36 -04:00
d3dce32216
gnu: metabat: Fix boost-related compilation issue.
...
Reported by Leo Famulari.
* gnu/packages/patches/metabat-fix-boost-issue.patch: New file.
* gnu/packages/bioinformatics.scm (metabat): Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 22:35:52 +10:00
8f155e3cff
gnu: bash-completion: Update to 2.7.
...
* gnu/packages/bash.scm (bash-completion): Update to 2.7.
2017-07-23 11:05:54 +03:00
6c1a317e29
Merge branch 'master' into core-updates
2017-07-23 03:42:12 -04:00
9478c05955
gnu: getmail: Update to 5.1.
...
* gnu/packages/mail.scm (getmail): Update to 5.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:34:47 -04:00
f3f68a442c
gnu: metabat: Update to 2.11.1.
...
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00
897ab082b2
gnu: python-plastid: Update to 0.4.8.
...
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
2017-07-23 10:29:36 +10:00
0620387a59
gnu: bcftools: Update to 1.5.
...
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag. Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-23 10:29:36 +10:00
63fa0ffcd4
gnu: samtools: Update to 1.5.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
2017-07-23 10:29:36 +10:00
4fb6d1280e
gnu: htslib: Update to 1.5.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
2017-07-23 10:29:35 +10:00
60739965da
gnu: python-pysam: Update to 0.11.2.2.
...
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
2017-07-23 10:29:35 +10:00
bca2c57658
gnu: bamm: Use htslib-1.3.
...
* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
2017-07-23 10:29:35 +10:00
98593f9f51
gnu: bcftools: Update to 1.4.1.
...
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch. Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-23 10:29:35 +10:00
4ab1644049
gnu: samtools: Update to 1.4.1.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
2017-07-23 10:29:34 +10:00
a9e4a1e641
gnu: htslib: Update to 1.4.1.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
2017-07-23 10:29:34 +10:00
c842d42593
gnu: samtools: Use "modify-phases" syntax.
...
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
2017-07-23 10:29:34 +10:00
c62d1a6e6c
gnu: bspwm: Update to 0.9.3.
...
* gnu/packages/wm.scm (bspwm): Update to 0.9.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:17:46 -04:00
7e3c977da6
gnu: Add oksh.
...
* gnu/packages/shells.scm (oksh): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:15:21 -04:00
36378bd57e
gnu: quassel: Enable TLS.
...
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:04:53 -04:00
e745221408
gnu: youtube-dl: Update to 2017.07.23.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
2017-07-23 01:59:32 +02:00
4b8b245b83
gnu: mosh: Update to 1.3.2.
...
* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
2017-07-23 01:27:29 +02:00
a68a83f015
gnu: Add openmolar.
...
* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:58 +02:00
2456153adc
gnu: Add python-pyqt+qscintilla.
...
* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
2017-07-22 23:48:58 +02:00
06d04dbcfc
gnu: Add python-qscintilla.
...
* gnu/packages/qt.scm (python-qscintilla): New variable.
Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:57 +02:00
3befd0a97c
gnu: Add qscintilla.
...
* gnu/packages/qt.scm (qscintilla): New variable.
Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:57 +02:00
056468dc5f
gnu: Add cran module.
...
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
2017-07-22 23:48:57 +02:00
30f8349efb
gnu: linux-libre: Update to 4.12.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
2017-07-22 14:46:00 -04:00
d422eac54e
gnu: linux-libre@4.9: Update to 4.9.39.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
2017-07-22 14:45:06 -04:00
f97c67a275
gnu: linux-libre@4.4: Update to 4.4.78.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
2017-07-22 14:44:24 -04:00
3a4b0b126b
gnu: r-s4vectors: Update to 0.14.3.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
2017-07-22 17:31:19 +02:00
a35a1e9c13
gnu: r-genomicranges: Update to 1.28.4.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
2017-07-22 17:22:07 +02:00
aa51da7eef
gnu: Remove python-fake-factory leftovers.
...
This is a followup to c799eb2eb8
2017-07-22 15:07:45 +02:00
c799eb2eb8
gnu: Remove python-fake-factory.
...
Superseded by python-faker since ce7911ddae
2017-07-22 14:31:28 +02:00
2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0.
...
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
2017-07-22 14:31:28 +02:00
4e52739c61
gnu: Add python-flaky.
...
* gnu/packages/python.scm (python-flaky, python2-flaky): New variables.
2017-07-22 14:31:27 +02:00
6027cb8a82
gnu: maim: Update to 5.4.64.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.4.64.
2017-07-22 14:31:27 +02:00
eb2b5f9d03
gnu: slop: Update to 6.3.47.
...
* gnu/packages/xdisorg.scm (slop): Update to 6.3.47.
[inputs]: Add GLEW.
2017-07-22 14:31:27 +02:00
0cd95cefe0
gnu: parallel: Update to 20170722.
...
* gnu/packages/parallel.scm (parallel): Update to 20170722.
2017-07-22 13:47:26 +02:00
bc35c9d318
gnu: font-gnu-unifont: Update to 10.0.05.
...
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.05.
2017-07-22 13:47:26 +02:00
f7975a3bde
gnu: nano: Update to 2.8.6.
...
* gnu/packages/nano.scm (nano): Update to 2.8.6.
2017-07-22 13:47:25 +02:00
f03d8d67a5
gnu: acct: Update to 6.6.4.
...
* gnu/packages/acct.scm (acct): Update to 6.6.4.
2017-07-22 13:47:25 +02:00
84fcb58050
gnu: Add conda.
...
* gnu/packages/package-management.scm (conda): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:30 +02:00
4bc08b6e79
gnu: Add python-conda.
...
* gnu/packages/package-management.scm (python-conda, python2-conda): New
variables.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:29 +02:00
513d35f191
gnu: Add python-anaconda-client.
...
* gnu/packages/package-management.scm (python-anaconda-client,
python2-anaconda-client): New variables.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:29 +02:00
1f84ff5135
gnu: Add python-clyent.
...
* gnu/packages/python.scm (python-clyent, python2-clyent): New variables.
2017-07-22 12:26:29 +02:00
3fee003950
gnu: Update python-pytz to 2017.2.
...
* gnu/packages/python.scm (python-pytz, python2-pytz): Update to 2017.2.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:29 +02:00
de469015c4
gnu: man-pages: Update to 4.12.
...
* gnu/packages/man.scm (man-pages): Update to 4.12.
2017-07-22 12:18:58 +02:00
1ffe41711b
gnu: tint2: Update to 0.14.6.
...
* gnu/packages/xdisorg.scm (tint2): Update to 0.14.6.
2017-07-21 22:41:24 -05:00
e9185cbac6
gnu: icedtea@3: Update to 3.5.0 [security fixes].
...
Fixes CVE-2017-{10053,10067,10074,10074,10078,10081,10087,10089,10090,10096,
10101,10102,10107,10108,10109,10110,10111,10115,10116,10118,10135,10176,10193,
10198}.
* gnu/packages/java.scm (icedtea-8): Update to 3.5.0.
2017-07-21 17:30:08 -04:00
c800fd564b
services: cuirass: Add fallback parameter.
...
* gnu/services/cuirass.scm (<cuirass-configuration>)[fallback?]: New field.
(cuirass-shepherd-service): Take it into account.
* doc/guix.texi (Continuous Integration): Document it.
2017-07-21 21:46:47 +02:00
3c14378381
gnu: vim: Update to 8.0.0727 [fixes CVE-2017-11109].
...
* gnu/packages/vim.scm (vim): Update to 8.0.0727.
(vim-full)[source]: Add field and hold back at version 8.0.0600.
2017-07-21 15:20:23 -04:00
6f226c078c
gnu: mysql: Update to 5.7.19.
...
* gnu/packages/databases.scm (mysql): Update to 5.7.19.
2017-07-21 14:50:24 -04:00
0cf9f9b1e3
gnu: libpsl: Update to 0.18.0.
...
* gnu/packages/web.scm (libpsl): Update to 0.18.0.
[native-inputs]: Add pkg-config.
[inputs]: Replace icu4c with libidn2; add libunistring.
2017-07-21 12:24:47 +02:00
cd4f35c379
gnu: borg: Update to 1.0.11.
...
* gnu/packages/backup.scm (borg): Update to 1.0.11.
2017-07-21 01:23:25 -04:00
f8fabfc99f
gnu: bitcoin-core: Actually build the graphical client.
...
* gnu/packages/finance.scm (bitcoin-core)[inputs]: Replace qtbase with qt.
2017-07-20 18:42:28 -04:00
81c35029d4
gnu: heimdal: Fix CVE-2017-{6594,11103}.
...
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/kerberos.scm (heimdal)[source]: Use them.
2017-07-20 15:33:53 -04:00
cfd6a3b1ee
gnu: Add bmon.
...
* gnu/packages/networking.scm (bmon): New variable.
2017-07-20 23:19:24 +05:30
fb5dfa86b1
gnu: texlive-latex-mdwtools: Fix syntax error in description.
...
* gnu/packages/tex.scm (texlive-latex-mdwtools)[description]: Fix texinfo
syntax error.
2017-07-20 16:40:29 +02:00
09acbb02c7
gnu: texlive-latex-environ: Fix invalid texinfo markup.
...
* gnu/packages/tex.scm (texlive-latex-environ)[description]: Fix texinfo
syntax errors.
2017-07-20 16:36:31 +02:00
0daa1d646a
gnu: Add mksh.
...
* gnu/packages/shells.scm (mksh): New variable.
2017-07-20 19:55:22 +05:30
8582e03ae5
gnu: Remove a left-over patch.
...
This is a followup to commit 426b0b898f
2017-07-20 09:00:36 -04:00
426b0b898f
gnu: pcre: Update replacement to 8.41 [fixes CVE-2017-{7244,7245,7246}].
...
* gnu/packages/pcre.scm (pcre)[replacement]: Update to pcre-8.41.
(pcre/fixed): Replace with ...
(pcre-8.41): ... new variable.
2017-07-20 08:26:40 -04:00
8b113790fa
tests: Use 'virtual-machine' records instead of monadic procedures.
...
* gnu/tests/base.scm (%test-basic-os): Use 'let*' instead of 'mlet*' and
'virtual-machine' instead of 'system-qemu-image/shared-store-script'.
(run-mcron-test): Likewise.
(run-nss-mdns-test): Likewise.
* gnu/tests/dict.scm (run-dicod-test): Likewise.
* gnu/tests/mail.scm (run-opensmtpd-test): Likewise.
(run-exim-test): Likewise.
* gnu/tests/messaging.scm (run-xmpp-test): Likewise.
* gnu/tests/networking.scm (run-inetd-test): Likewise.
* gnu/tests/nfs.scm (run-nfs-test): Likewise.
* gnu/tests/ssh.scm (run-ssh-test): Likewise.
* gnu/tests/web.scm (run-nginx-test): Likewise.
2017-07-20 11:57:13 +02:00
ed419fa0c5
vm: Add a <virtual-machine> type and associated gexp compiler.
...
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Add
#:options parameter and honor it.
(<virtual-machine>): New record type.
(virtual-machine): New macro.
(port-forwardings->qemu-options, virtual-machine-compiler): New
procedures.
2017-07-20 11:57:13 +02:00
c97cef0a91
gnu: Add premake4.
...
* gnu/packages/build-tools.scm (premake4): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-20 11:57:13 +02:00
742242a5be
gnu: Add java-commons-cli@1.2.
...
* gnu/packages/java.scm(java-commons-cli-1.2): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-07-20 11:57:12 +02:00
6158309450
gnu: Update g-wrap to use guile-2.2.
...
* gnu/packages/guile.scm (g-wrap): [propagated-inputs]: Use guile-2.2.
[arguments]: Add "--disable-Werror" to configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-20 11:57:12 +02:00
ab466d79e1
gnu: Add eolie.
...
* gnu/packages/gnome.scm (eolie): New variable.
2017-07-20 08:41:28 +02:00
0762a1dbf4
gnu: perl-html-template: Update to 2.97.
...
* gnu/packages/web.scm (perl-html-template): Update to 2.97.
2017-07-20 02:10:55 +02:00
1a34ca0e8f
gnu: openh264: Update to 1.7.0.
...
* gnu/packages/video.scm (openh264): Update to 1.7.0.
2017-07-20 01:36:51 +02:00
ba4e15ae85
gnu: gnome-mpv: Update to 0.12.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.12.
2017-07-20 01:36:50 +02:00
29ac89a635
gnu: Add 0xffff.
...
* gnu/packages/flashing-tools.scm (0xffff): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:52 +02:00
05c8851695
gnu: Add libusb@0.1.
...
* gnu/packages/libusb.scm (libusb-0.1): New variable.
* gnu/packages/patches/libusb-0.1-disable-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:52 +02:00
Ricardo Wurmus