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Author SHA1 Message Date
Ludovic Courtès 4978ffcfc2 gnu: libgit2: Update to 0.23.4. 
* gnu/packages/version-control.scm (libgit2): Update to 0.23.4.
 2016-03-04 11:48:52 +01:00
Ludovic Courtès 9c7e7eadfa gnu: findnewest: Update to 0.3. 
* gnu/packages/version-control.scm (findnewest): Update to 0.3.
 2016-03-04 11:48:52 +01:00
Leo Famulari c7658f8f2c gnu: exim: Update to 4.86.2 [fixes CVE-2016-1531]. 
* gnu/packages/mail.scm (exim): Update to 4.86.2.
 2016-03-03 20:38:47 -05:00
David Thompson 4a52671131 gnu: Add byzanz. 
* gnu/packages/gnome.scm (byzanz): New variable.
 2016-03-03 20:23:07 -05:00
Efraim Flashner 50b66bf1b0 gnu: youtube-dl: Update to 2016.03.01. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.03.01.
 2016-03-03 22:55:46 +02:00
Efraim Flashner 581873b55d gnu: mpv: Update to 0.16.0. 
* gnu/packages/video.scm (mpv): Update to 0.16.0.
 2016-03-03 22:53:37 +02:00
Leo Famulari d8173f21f7 gnu: perl: Replace with patched version [fixes CVE-2016-2381]. 
* gnu/packages/patches/perl-CVE-2016-2381.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[replacement]: New field.
(perl-fixed): New variable.
* gnu/packages/commencement.scm (perl-boot0)[replacement]: New field.
 2016-03-03 14:56:23 -05:00
Efraim Flashner 7b3f2682de gnu: irssi: Support proxy, socks, bot. 
* gnu/packages/irc.scm (irssi)[arguments]: Add configure flags to
support proxy, socks and bot.
 2016-03-03 19:04:31 +02:00
Efraim Flashner fd41741bdc gnu: irssi: Update to 0.8.18. 
* gnu/packages/irc.scm (irssi): Update to 0.8.18.
[source]: Update uri.
 2016-03-03 19:04:31 +02:00
Petter d0a65256a3 system: GRUB menu entry says "beta" instead of "alpha" 
* gnu/system.scm (kernel->grub-label): Change "alpha" to "beta'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-03 17:42:47 +01:00
Ludovic Courtès 16cc99610d system: Add rfkill to '%base-packages'. 
* gnu/system.scm (%base-packages): Add RFKILL.
 2016-03-03 17:42:47 +01:00
Ricardo Wurmus 649e9b3b47 gnu: python-pysam: Move cython and setuptools to native inputs. 
* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move
"python-cython" and "python-setuptools" from here...
[native-inputs]: ... to here.
 2016-03-03 13:47:19 +01:00
Ricardo Wurmus 3acb8c857c gnu: deeptools: Update to 2.1.1. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.1.1.
[inputs]: Add "python2-numpydoc" and "python2-pybigwig".
 2016-03-03 13:47:12 +01:00
Ricardo Wurmus 14bda1ff49 gnu: deeptools: Change "propagated-inputs" to "inputs". 
* gnu/packages/bioinformatics.scm (deeptools)[propagated-inputs]: Move
all inputs from here...
[inputs]: ...to here.
 2016-03-03 13:47:02 +01:00
Ricardo Wurmus 69e0e03c36 gnu: Add python-pybigwig. 
* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig):
  New variables.
 2016-03-03 13:46:52 +01:00
Ricardo Wurmus d454640c38 gnu: python-pysam: Update to 0.8.4. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.8.4.
 2016-03-03 13:46:39 +01:00
Ricardo Wurmus 55a9a8c2b9 gnu: python-pysam, python2-pysam: Move to bioinformatics.scm. 
* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
  ...here.
 2016-03-03 13:46:26 +01:00
Lukas Gradl e90819c40a gnu: Add procmail. 
* gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file.
 * gnu-system.am (dist_patch_DATA): Add it.
 * gnu/packages/mail.scm (procmail): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-02 20:44:18 -05:00
Mathieu Lirzin 1b846da8c3 utils: Use '@' for separating package names and version numbers. 
This provides the ability to use numbers in package names.

Fixes <http://bugs.gnu.org/19219>.

* guix/utils.scm (package-name->name+version): New procedure.
* gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument.
Use the previous method when no package is found.
(specification->package+output, specification->package): Adapt
documentation to new syntax.
* doc/guix.texi (Invoking guix package, Invoking guix import): Likewise.
* guix/ui.scm (package-specification->name+version+output): Likewise.
* guix/scripts/import/hackage.scm (show-help): Likewise.
* tests/guix-build.sh: Adapt to new syntax.
* tests/guix-lint.sh: Likewise.
* tests/guix-package.sh: Likewise.
* tests/ui.scm ("package-specification->name+version+output"): Likewise.
* tests/utils.scm ("package-name->name+version"): Likewise.
* NEWS: Mention new syntax.
 2016-03-02 21:41:41 +01:00
Mathieu Lirzin fad155d47e packages: Factorize package specification search. 
* gnu/packages.scm (%find-package): New procedure.
(specification->package, specification->package+output): Use it.
 2016-03-02 21:41:41 +01:00
Mark H Weaver b134a80c36 gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes]. 
* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
 2016-03-02 15:13:15 -05:00
Mark H Weaver bd009cd95d gnu: nss: Update to 3.21.1. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.1.
 2016-03-02 15:13:14 -05:00
Mark H Weaver d47ad0890c gnu: graphite2: Replace with 1.3.6 [unspecified security fixes]. 
See <https://bodhi.fedoraproject.org/updates/FEDORA-2016-dec1faadc5>

* gnu/packages/fontutils.scm (graphite2)[replacement]: New field.
(graphite2-1.3.6): New variable.
 2016-03-02 15:12:18 -05:00
Jessica Tallon c285a400a2 gnu: Add password-store. 
* gnu/packages/password-utils.scm (password-store): New variable.

Co-authored-by: Andreas Enge <andreas@enge.fr>
Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-03-02 14:18:51 -05:00
Roel Janssen dd6e70f920 gnu: Add cppcheck. 
* gnu/packages/check.scm (cppcheck): New variable.
 2016-03-02 15:17:56 +01:00
Mark H Weaver ed742bc4b4 gnu: openssl: Enable ssl2 at build time to ensure ABI compatible graft. 
Fixes <https://debbugs.gnu.org/22876>
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.

* gnu/packages/tls.scm (openssl-1.0.2g)[arguments]: Override the inherited
  'configure' phase to add "enable-ssl2" as an argument to ./config.
 2016-03-02 01:58:42 -05:00
宋文武 6150b5c780 gnu: xfce: Don't wrap 'startxfce4'. 
The necessary environment variables are set by 'etc/profile' now.

* gnu/packages/xfce.scm (xfce)[build-system]: Use 'trivial-build-system'.
[arguments]: Simplify.
 2016-03-02 08:32:47 +08:00
Leo Famulari 5e8276dcf4 gnu: ilmbase: Add patch to fix build on i686. 
Fixes <http://bugs.gnu.org/22049>.

* gnu/packages/patches/ilmbase-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (ilmbase)[source]: Add patch.
 2016-03-01 19:08:31 -05:00
Leo Famulari 88ccca45f6 gnu: openssh: Update to 7.2p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.2p1.
 2016-03-01 16:32:41 -05:00
Leo Famulari 599860d2b9 gnu: libressl: Update to 2.2.6. 
* gnu/packages/tls.scm (libressl): Update to 2.2.6.
 2016-03-01 16:30:13 -05:00
Leo Famulari 043c3f0bed gnu: parallel: Update to 20160222. 
* gnu/packages/parallel.scm (parallel): Update to 20160222.
 2016-03-01 15:15:38 -05:00
Pjotr Prins f82c8c3cba gnu: r-go-db: Bioconductor changed URL for data downloads. 
* gnu/packages/bioinformatics.scm (r-go-db)[source]: Update data URL.
 2016-03-01 19:47:26 +02:00
Pjotr Prins 27acfaea4c gnu: r-iranges: Update to 2.4.8. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.4.8.
 2016-03-01 19:47:26 +02:00
Pjotr Prins 8921841da8 gnu: r-s4vectors: Update to 0.8.11. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.8.11.
 2016-03-01 19:47:25 +02:00
Pjotr Prins b70fa3c7f7 gnu: r-ggplot2: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.0.0.
 2016-03-01 19:47:24 +02:00
Ludovic Courtès caeadfddb0 gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}]. 
See <http://openssl.org/news/secadv/20160301.txt>.
Also fixes <http://bugs.gnu.org/22831>.

* gnu/packages/patches/openssl-c-rehash-in.patch: New file.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2g): New variable.
 2016-03-01 16:00:46 +01:00
Efraim Flashner d06fc008bd gnu: tiled: Use 'modify-phases'. 
* gnu/packages/game-development.scm (tiled)[arguments]: Use 'modify-phases'.
 2016-03-01 14:55:55 +02:00
Efraim Flashner e8ea01d902 gnu: tiled: Update to 0.15.1. 
* gnu/packages/game-development.scm (tiled): Update to 0.15.1.
 2016-03-01 14:55:55 +02:00
Ricardo Wurmus d1e32822b4 gnu: Add PePr. 
* gnu/packages/bioinformatics.scm (pepr): New variable.
 2016-03-01 11:51:24 +01:00
Ricardo Wurmus d29150b55d gnu: Add bwa-pssm. 
* gnu/packages/bioinformatics.scm (bwa-pssm): New variable.
 2016-03-01 10:31:04 +01:00
Ricardo Wurmus b4464d384c gnu: Add gdsl. 
* gnu/packages/datastructures.scm (gdsl): New variable.
 2016-03-01 10:30:04 +01:00
Efraim Flashner e288f0075c gnu: weechat: Move to irc.scm. 
* gnu/packages/weechat.scm (weechat): Move from here ...
* gnu/packages/irc.scm (weechat): ... to here.
* gnu/packages/weechat.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove weechat.scm.
 2016-03-01 11:09:32 +02:00
Efraim Flashner a61bd6a5e3 gnu: irssi: Use 'modify-phases'. 
* gnu/packages/irc.scm (irssi)[arguments]: Use 'modify-phases'.
 2016-03-01 11:09:32 +02:00
Efraim Flashner 27930f853d gnu: irssi: Move to irc.scm. 
* gnu/packages/irssi.scm (irssi): Move from here ...
* gnu/packages/irc.scm (irssi): ... to here.
* gnu/packages/irssi.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove irssi.scm.
 2016-03-01 11:09:32 +02:00
Efraim Flashner 980f058d92 gnu: Add quassel. 
* gnu/packages/irc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
 2016-03-01 11:09:32 +02:00
Efraim Flashner 550791b8f1 gnu: Add snorenotify. 
* gnu/packages/kde.scm (snorenotify): New variable.
 2016-03-01 11:09:32 +02:00
Efraim Flashner d34c594aeb gnu: Add qca. 
* gnu/packages/kde.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
 2016-03-01 11:09:32 +02:00
Efraim Flashner d8ea278204 gnu: Add oxygen-icons. 
* gnu/packages/kde-frameworks.scm (oxygen-icons): New variable.
 2016-03-01 11:09:32 +02:00
Manolis Ragkousis fea1f275bc gnu: Add desmume. 
* gnu/packages/games.scm (desmume): New variable.
 2016-02-29 22:04:53 -05:00
Mark H Weaver 8d5ceb120d gnu: curl: Use updated libssh2 [fixes CVE-2016-7087]. 
* gnu/packages/curl.scm (curl)[inputs]: Use libssh2.
* gnu/packages/ssh.scm (libssh2-1.4): Remove variable.
 2016-02-29 20:09:29 -05:00
Christopher Allan Webber aa5946edb2 gnu: Remove python2-pil. 
python2-pil is vulnerable to several security issues (CVE-2016-0740,
CVE-2016-0775, and CVE-2016-2533).  Fortunately, python2-pillow provides
equivalent functionality, so this package can be cleanly removed.

* gnu/packages/python.scm (python2-pil): Remove variable.
 2016-02-29 15:01:20 -08:00
Ricardo Wurmus daeb61f7a9 gnu: guile-for-guile-emacs: Use guile-2.0 search paths. 
* gnu/packages/guile.scm (guile-for-guile-emacs)[native-search-paths]:
  Use the same search paths as guile-2.0.
 2016-02-29 07:10:40 +01:00
Leo Famulari 823e2ed4b3 gnu: msmtp: Install msmtpq. 
* gnu/packages/mail.scm (msmtp)[arguments]: Install msmtpq scripts.
 2016-02-28 22:06:24 -05:00
Ludovic Courtès 1a59b6d014 gnu: git: Install symlinks instead of hard links. 
This reduces nar size by a factor of 10.
Fixes <http://bugs.gnu.org/21949>.

* gnu/packages/version-control.scm (git)[arguments]: Pass
NO_INSTALL_HARDLINKS as #:make-flags.
 2016-02-28 16:41:53 +01:00
Andreas Enge dbb7a08175 gnu: libwnck: Rename variable for GTK+ 2 variant. 
* gnu/packages/gnome.scm (libwnck-1): Rename this...
  (libwnck-2): ...to this.
* gnu/packages/xfce.scm (xfce4-panel, xfce4-xkb-plugin, xfce4-session,
  xfwm4, xfdesktop)[inputs]: Adapt.
 2016-02-28 15:59:56 +01:00
Efraim Flashner 2236da6e97 gnu: xrandr: Update to 1.5.0. 
* gnu/packages/xorg.scm (xrandr): Update to 1.5.0.
 2016-02-28 14:13:30 +02:00
Efraim Flashner 97a0859593 gnu: libqmi: Update to 1.12.8. 
* gnu/packages/freedesktop.scm (libqmi): Update to 1.12.8.
 2016-02-28 13:42:34 +02:00
Efraim Flashner 9012e118ff gnu: wayland: Update to 1.10.0. 
* gnu/packages/freedesktop.scm (wayland): Update to 1.10.0.
[arguments]: Disable parallel tests.
 2016-02-28 13:32:52 +02:00
Efraim Flashner d3e3d7f02a gnu: libinput: Update to 1.2.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.2.0.
 2016-02-28 13:08:08 +02:00
Efraim Flashner a724924beb gnu: python-tornado: Update to 4.3. 
* gnu/packages/python.scm (python-tornado): Update to 4.3.
[native-inputs]: Add python-backports-abc.
(python2-tornado)[inputs]: Add python2-singledispatch.
 2016-02-28 10:53:42 +02:00
Efraim Flashner 6b59fc1020 gnu: Add python-backports-abc. 
* gnu/packages/python.scm (python-backports-abc): New variable.
 2016-02-28 10:53:35 +02:00
Mark H Weaver 9579118922 gnu: bitlbee: Update to 3.4.1. 
* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
 2016-02-27 21:10:56 -05:00
Tobias Geerinckx-Rice 9c7f7e2da9 gnu: btrfs-progs: Update to 4.4.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.4.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-02-27 22:39:51 +02:00
Ricardo Wurmus a003b5b650 gnu: scribus: Update to 1.5.1. 
* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-02-27 16:34:20 +01:00
Ricardo Wurmus b951e26fe5 gnu: arandr: Add "xrandr" to inputs. 
* gnu/packages/xdisorg.scm (arandr)[inputs]: Add "xrandr".
[arguments]: Add build phase "make-xrandr-available" to ensure "xrandr"
executable is found at runtime.
 2016-02-27 16:25:26 +01:00
Mark H Weaver b35461748b gnu: Fix misplaced commas (unquote). 
Fix many occurrences of comma (unquote) being placed immediately after the
previous list item, e.g. ("ncurses", ncurses) in the inputs.

* gnu/packages/base.scm (patch, gnu-make),
  gnu/packages/bioinformatics.scm (hmmer),
  gnu/packages/bittorrent.scm (aria2),
  gnu/packages/compression.scm (pbzip2),
  gnu/packages/databases.scm (recutils),
  gnu/packages/fonts.scm (font-terminus),
  gnu/packages/freedesktop.scm (xdg-utils, elogind),
  gnu/packages/games.scm (gnujump),
  gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit),
  gnu/packages/gnunet.scm (gnunet),
  gnu/packages/gnuzilla.scm (mozjs, nspr),
  gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf),
  gnu/packages/lua.scm (lua),
  gnu/packages/openstack.scm (python-swiftclient),
  gnu/packages/perl.scm (perl-json-any),
  gnu/packages/polkit.scm (polkit-qt),
  gnu/packages/python.scm (wrap-python3, python-oauthlib)
  (python-mccabe-0.2.1, python-contextlib2, python2-rauth),
  gnu/packages/qt.scm (qtkeychain),
  gnu/packages/ruby.scm (ruby-nokogiri),
  gnu/packages/screen.scm (screen),
  gnu/packages/ssh.scm (libssh),
  gnu/packages/video.scm (ffmpeg, mplayer),
  gnu/packages/vim.scm (vim),
  gnu/packages/xdisorg.scm (redshift),
  gnu/packages/xfce.scm (xfce4-panel, xfce4-settings),
  gnu/packages/xnee.scm (xnee),
  gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi),
  gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote).
 2016-02-27 08:49:26 -05:00
Ricardo Wurmus 48766ea85f gnu: Add emacs-god-mode. 
* gnu/packages/emacs.scm (emacs-god-mode): New variable.
 2016-02-27 13:50:18 +01:00
Ricardo Wurmus 048bfba163 gnu: Add gtklick. 
* gnu/packages/music.scm (gtklick): New variable.
 2016-02-27 12:27:21 +01:00
Ricardo Wurmus 6ab4712d6e gnu: python2-pygtk: Add libglade to inputs. 
* gnu/packages/gtk.scm (python2-pygtk)[inputs]: Add "libglade".
 2016-02-27 12:27:21 +01:00
Ricardo Wurmus a91d72e23a gnu: Add pyliblo. 
* gnu/packages/audio.scm (python-pyliblo, python2-pyliblo): New
  variables.
 2016-02-27 12:27:21 +01:00
Mark H Weaver b460a99890 gnu: linux-libre-4.1: Update to 4.1.18. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.18.
 2016-02-27 02:36:16 -05:00
Mark H Weaver 3dad786b64 gnu: linux-libre: Update to 4.4.3. 
* gnu/packages/linux.scm (linux-libre): Update to 4.4.3.
 2016-02-27 02:36:10 -05:00
Mark H Weaver 4ed737b2ab gnu: gtk-doc: Improve fix-docbook phase. 
* gnu/packages/gtk.scm (gtk-doc)[arguments]: In the 'fix-docbook' phase,
avoid hard-coding the docbook-xsl version number, and return #t.
 2016-02-25 22:24:32 -05:00
Danny Milosavljevic b31fbea566 gnu: Add python-psycopg2. 
* gnu/packages/python.scm (python-psycopg2, python2-psycopg2): New variables.
 2016-02-25 14:35:28 -08:00
Leo Famulari 7dd21101a3 gnu: diffoscope: Update to 49. 
* gnu/packages/package-management.scm (diffoscope): Update to 49.
[source]: Use pypi-uri.
[arguments]: Use python-3. Enable tests. Add 'dependency-on-python-magic' phase
and remove 'dependency-on-rpm' phase.
[native-inputs]: Remove python2-setuptools.
[inputs]: Replace python2-file, python2-debian, python2-libarchive-c,
python2-tlsh, python2-pytest, python2-chardet with python-3 variants.
 2016-02-25 17:06:25 -05:00
Rene Saavedra 66d59111e3 gnu: Add dconf-editor. 
* gnu/packages/gnome.scm (dconf-editor): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-25 16:36:10 -05:00
Andy Wingo 735e84c7bd gnu: libx264: Change source URL to HTTP. 
* gnu/packages/video.scm (libx264): Download via HTTP.  The videolan ftp
  server does not work with IPv6.
 2016-02-25 22:33:40 +01:00
Andy Wingo b4787e71ac gnu: gtk-doc: Fix build. 
* gnu/packages/gtk.scm (gtk-doc): Fix build.
 2016-02-25 22:33:20 +01:00
Efraim Flashner 2865c81c71 gnu: youtube-dl: Update to 2016.02.22. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.22.
 2016-02-25 22:54:03 +02:00
Efraim Flashner eb6e2e812a gnu: python-decorator: Update to 4.0.9. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.9.
 2016-02-25 21:05:37 +02:00
Efraim Flashner cc0c4fdedd gnu: python-traitlets: Update to 4.1.0. 
* gnu/packages/python.scm (python-traitlets): Update to 4.1.0.
[native-inputs]: Add python-mock.
 2016-02-25 21:05:37 +02:00
Efraim Flashner c6ebd40da1 gnu: python-mccabe: Update to 0.4.0. 
* gnu/packages/python.scm (python-mccabe): Update to 0.4.0.
[inputs]: Add python-pytest, python-pytest-runner.
(python-mccabe-0.2.1)[inputs]: Only use python-setuptools.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 43789136d2 gnu: python-flake8: Update to 2.5.4. 
* gnu/packages/python.scm (python-flake8): Update to 2.5.4.
[inputs]: Use recent python-pep8, python-pyflakes.
 2016-02-25 21:05:37 +02:00
Efraim Flashner db251311cf gnu: python-pep8: Update to 1.7.0. 
* gnu/packages/python.scm (python-pep8): Update to 1.7.0.
 2016-02-25 21:05:37 +02:00
Efraim Flashner a4d9609c98 gnu: python-networkx: Update to 1.11. 
* gnu/packages/python.scm (python-networkx): Update to 1.11.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 6f068e081b gnu: python-hypothesis: Update to 3.0.4. 
* gnu/packages/python.scm (python-hypothesis): Update to 3.0.4.
[native-inputs]: Remove python-setuptools.
(python2-hypothesis): Use 'strip-python2-variant'.
[native-inputs]: Add python2-enum34, python2-setuptools.
 2016-02-25 21:05:37 +02:00
Efraim Flashner fee04c198c gnu: python-html5lib: Update to 1.0b8. 
* gnu/packages/python.scm (python-html5lib): Update to 1.0b8.
 2016-02-25 21:05:37 +02:00
Efraim Flashner b6785c2e3a gnu: python-isodate: Update to 0.5.4. 
* gnu/packages/python.scm (python-isodate): Update to 0.5.4.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 9d813ec147 gnu: python-wsgi-intercept: Update to 1.1.2. 
* gnu/packages/python.scm (python-wsgi-intercept): Update to 1.1.2.
[native-inputs]: Add python-six.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 29f20168cf gnu: python-pytest-localserver: Update to 0.3.5. 
* gnu/packages/python.scm (python-pytest-localserver): Update to 0.3.5.
 2016-02-25 21:05:37 +02:00
Efraim Flashner da8b011d2a gnu: python-requests-toolbelt: Update to 0.6.0. 
* gnu/packages/python.scm (python-requests-toolbelt): Update to 0.6.0.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 74a066f9a0 gnu: python-requests: Update to 2.9.1. 
* gnu/packages/python.scm (python-requests): Update to 2.9.1.
 2016-02-25 21:05:37 +02:00
Efraim Flashner 40981b5c18 gnu: python-wheel: Update to 0.29.0. 
* gnu/packages/python.scm (python-wheel): Update to 0.29.0.
 2016-02-25 21:05:37 +02:00
Christopher Allan Webber a8f20f63dc gnu: Add python-pastescript. 
* gnu/packages/python.scm (python-pastescript, python2-pastescript):
  New variables.
 2016-02-25 11:01:56 -08:00
Christopher Allan Webber c4a7904c21 gnu: Add python-paste. 
* gnu/packages/python.scm (python-paste, python2-paste): New variables.
* gnu/packages/patches/python-paste-remove-timing-test.patch: New file.
* gnu/packages/patches/python-paste-remove-website-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
 2016-02-25 11:01:45 -08:00
Mark H Weaver e62b5c6903 Merge branch 'media-updates' 2016-02-25 13:50:19 -05:00
Ludovic Courtès 736f9ffce2 gnu: Add missing import in bioinformatics.scm. 
This is a followup to 1baee94.

* gnu/packages/bioinformatics.scm: Add missing import.
 2016-02-25 12:48:08 +01:00
Nils Gillmann a65e2a02fc gnu: Add kyotocabinet. 
* gnu/packages/databases.scm (kyotocabinet): New variable.
 2016-02-25 11:56:00 +01:00
Ricardo Wurmus 1baee943ca gnu: Add libBigWig. 
* gnu/packages/bioinformatics.scm (libbigwig): New variable.
 2016-02-25 11:43:44 +01:00
Jan Nieuwenhuizen 1644f0cd87 gnu: guile-json: Update to 0.5.0. 
* gnu/packages/guile.scm (guile-json): Update to 0.5.0.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-02-25 09:19:30 +01:00
Ricardo Wurmus b16043a361 gnu: ardour: Update to 4.7. 
* gnu/packages/audio.scm (ardour): Update to 4.7.
 2016-02-25 09:17:35 +01:00
宋文武 f072e9adf5 gnu: xdg-utils: Propagate xprop and xset. 
Fixes <http://bugs.gnu.org/22755>.

* gnu/packages/freedesktop.scm (xdg-utils): Propagate xprop and xset.
 2016-02-25 08:54:42 +08:00
Leo Famulari 85267efb2a gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739]. 
* gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file.
* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.7.3.
  (libssh-0.5): Rename to...
  (libssh-0.6): ... this.  Update to 0.6.5.
  [source]: Add patch for CVE-2016-0739.
  (guile-ssh)[inputs]: Use libssh-0.6.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:09 -05:00
Leo Famulari 78d80c5c6a gnu: libssh2: Update to 1.7.0 [fixes CVE-2016-0787]. 
* gnu/packages/ssh.scm (libssh2): Update to 1.7.0.
  (libssh2-1.4): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 16:32:08 -05:00
Mark H Weaver bf6996c9cf gnu: xf86-video-intel: Update to 2.99.917-1-d167280. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-1-d167280.
 2016-02-24 13:56:57 -05:00
Efraim Flashner a49332a0c0 gnu: gdb: Update to 7.11. 
* gnu/packages/gdb.scm (gdb): Update to 7.11.
 2016-02-24 20:52:12 +02:00
Efraim Flashner c73210d7a9 gnu: kde-frameworks: Update to 5.19.0. 
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0.
(extra-cmake-modules): Update to 5.19.0.
 2016-02-24 20:25:25 +02:00
Andy Wingo 79fd74facd gnu: services: Start X with -configdir. 
* gnu/services/xorg.scm (%default-xorg-modules): New public variable.
(xorg-configuration-directory): New function.
(xorg-start-command): Add #:modules keyword argument, defaulting to
%default-xorg-modules.  Build an xorg.conf.d directory from those
modules, and pass it to X via the -configdir parameter.
 2016-02-24 11:49:57 -05:00
Andy Wingo d0a6437f7d gnu: libxaw: Update to 1.0.13. 
* gnu/packages/xorg.scm (libxaw): Update to 1.0.13.
 2016-02-24 11:49:57 -05:00
Andy Wingo ea9763dae0 gnu: libxt: Update to 1.1.5. 
* gnu/packages/xorg.scm (libxt): Update to 1.1.5.
 2016-02-24 11:49:57 -05:00
Andy Wingo f1aeae762d gnu: libx11: Update to 1.6.3. 
* gnu/packages/xorg.scm (libx11): Update to 1.6.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 0eae6b2d91 gnu: xorg-server: Update to 1.18.1. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.18.1.
 2016-02-24 11:49:57 -05:00
Andy Wingo 7606baa8f9 gnu: libxxf86vm: Update to 1.1.4. 
* gnu/packages/xorg.scm (libxxf86vm): Update to 1.1.4.
 2016-02-24 11:49:57 -05:00
Andy Wingo 9a5f739ef8 gnu: libxvmc: Update to 1.0.9. 
* gnu/packages/xorg.scm (libxvmc): Update to 1.0.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo 61f29af1db gnu: libxrandr: Update to 1.5.0. 
* gnu/packages/xorg.scm (libxrandr): Update to 1.5.0.
 2016-02-24 11:49:57 -05:00
Andy Wingo d51b8529e6 gnu: libxi: Update to 1.7.6. 
* gnu/packages/xorg.scm (libxi): Update to 1.7.6.
 2016-02-24 11:49:57 -05:00
Andy Wingo 10d85db449 gnu: xproto: Update to 7.0.28. 
* gnu/packages/xorg.scm (xproto): Update to 7.0.28.
 2016-02-24 11:49:57 -05:00
Andy Wingo 6fad350498 gnu: libxrender: Update to 0.9.9. 
* gnu/packages/xorg.scm (libxrender): Update to 0.9.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo 42ca6c8528 gnu: libxp: Update to 1.0.3. 
* gnu/packages/xorg.scm (libxp): Update to 1.0.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 97b6f9632e gnu: xvinfo: Update to 1.1.3. 
* gnu/packages/xorg.scm (xvinfo): Update to 1.1.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 625f4cae0a gnu: xmodmap: Update to 1.0.9. 
* gnu/packages/xorg.scm (xmodmap): Update to 1.0.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo 85c64cb200 gnu: xlsatoms: Update to 1.1.2. 
* gnu/packages/xorg.scm (xlsatoms): Update to 1.1.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo 379e1d875b gnu: xkeyboard-config: Update to 2.17. 
* gnu/packages/xorg.scm (xkeyboard-config): Update to 2.17.
 2016-02-24 11:49:57 -05:00
Andy Wingo ed7abe52e0 gnu: xkbevd: Update to 1.1.4. 
* gnu/packages/xorg.scm (xkbevd): Update to 1.1.4.
 2016-02-24 11:49:57 -05:00
Andy Wingo ab2d710cc2 gnu: xinput: Update to 1.6.2. 
* gnu/packages/xorg.scm (xinput): Update to 1.6.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo 2e5a0b7850 gnu: xhost: Update to 1.0.7. 
* gnu/packages/xorg.scm (xhost): Update to 1.0.7.
 2016-02-24 11:49:57 -05:00
Andy Wingo 033a1ba373 gnu: xgamma: Update to 1.0.6. 
* gnu/packages/xorg.scm (xgamma): Update to 1.0.6.
 2016-02-24 11:49:57 -05:00
Andy Wingo 9177dbeb5f gnu: xf86-video-voodoo: Fix build. 
* gnu/packages/xorg.scm (xf86-video-voodoo): Add patch from upstream git
  to fix the build.
 2016-02-24 11:49:57 -05:00
Andy Wingo 2ae7a55062 gnu: xf86-video-vmware: Update to 13.1.0. 
* gnu/packages/patches/xf86-video-vmware-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-vmware): Update to 13.1.0.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 937c13f220 gnu: xf86-video-vesa: Update to 2.3.4. 
* gnu/packages/xorg.scm (xf86-video-vesa): Update to 2.3.4.
 2016-02-24 11:49:57 -05:00
Andy Wingo bcd4a74039 gnu: xf86-video-trident: Update to 1.3.7. 
* gnu/packages/patches/xf86-video-trident-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.7.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 816decebf2 gnu: xf86-video-tdfx: Update to 1.4.6. 
* gnu/packages/patches/xf86-video-tdfx-remove-mibstore.patch: Delete
  file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.6.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 5f59f5103a gnu: xf86-video-sis: Update to 0.10.8. 
* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch,
  gnu/packages/patches/xf86-video-sis-update-api.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.8.
  [source]: Remove patches.
 2016-02-24 11:49:57 -05:00
Andy Wingo fc1172f787 gnu: xf86-video-siliconmotion: Update to 1.7.8. 
* gnu/packages/patches/xf86-video-siliconmotion-remove-mibstore.patch:
  Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.8.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo bfc0d8395e gnu: xf86-video-savage: Update to 2.3.8. 
* gnu/packages/xorg.scm (xf86-video-savage): Update to 2.3.8.
 2016-02-24 11:49:57 -05:00
Andy Wingo bfe27469b4 gnu: xf86-video-r128: Update to 6.10.1. 
* gnu/packages/patches/xf86-video-r128-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.1.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 9f9b89bcf2 gnu: xf86-video-nouveau: Update to 1.0.12. 
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.12.
 2016-02-24 11:49:57 -05:00
Andy Wingo bd714f8509 gnu: xf86-video-neomagic: Update to 1.2.9. 
* gnu/packages/xorg.scm (xf86-video-neomagic): Update to 1.2.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo ea192db119 gnu: xf86-video-mga: Update to 1.6.4. 
* gnu/packages/patches/xf86-video-mga-glibc-2.20.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.4.
  [source]: Remove patch.
 2016-02-24 11:49:57 -05:00
Andy Wingo 2a26eb96d3 gnu: xf86-video-mach64: Update to 6.9.5. 
* gnu/packages/xorg.scm (xf86-video-mach64): Update to 6.9.5.
 2016-02-24 11:49:57 -05:00
Andy Wingo 6cc328b43b gnu: xf86-video-intel: Update to git snapshot e41040f. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to git snapshot
  e41040f.  Upstream isn't making releases.

Modified-By: Mark H Weaver <mhw@netris.org>
 2016-02-24 11:49:57 -05:00
Andy Wingo 315a0ecc0d gnu: xf86-video-geode: Update to 2.11.18. 
* gnu/packages/xorg.scm (xf86-video-geode): Update to 2.11.18.
 2016-02-24 11:49:57 -05:00
Andy Wingo 6bc2fa7c5e gnu: xf86-video-cirrus: Update to 1.5.3. 
* gnu/packages/xorg.scm (xf86-video-cirrus): Update to 1.5.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 83696ce1c2 gnu: xf86-video-ati: Update to 7.6.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.6.1.
 2016-02-24 11:49:57 -05:00
Andy Wingo 746e671007 gnu: xf86-input-void: Update to 1.4.1. 
* gnu/packages/xorg.scm (xf86-input-void): Update to 1.4.1.
 2016-02-24 11:49:57 -05:00
Andy Wingo eec4e906ce gnu: xf86-input-synaptics: Update to 1.8.3. 
* gnu/packages/xorg.scm (xf86-input-synaptics): Update to 1.8.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo 5be72cd395 gnu: xf86-input-keyboard: Update to 1.8.1. 
* gnu/packages/xorg.scm (xf86-input-keyboard): Update to 1.8.1.
 2016-02-24 11:49:57 -05:00
Andy Wingo 049a02128d gnu: xf86-input-libinput: Update to 0.16.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.16.0.
 2016-02-24 11:49:57 -05:00
Andy Wingo d44d724966 gnu: xf86-input-evdev: Update to 2.10.1. 
* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.1.  Add mtdev
  input.
 2016-02-24 11:49:57 -05:00
Andy Wingo 9502179d62 gnu: xev: Update to 1.2.2. 
* gnu/packages/xorg.scm (xev): Update to 1.2.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo 380af498e3 gnu: xdriinfo: Update to 1.0.5. 
* gnu/packages/xorg.scm (xdriinfo): Update to 1.0.5.
 2016-02-24 11:49:57 -05:00
Andy Wingo c6be2454c1 gnu: xdpyinfo: Update to 1.3.2. 
* gnu/packages/xorg.scm (xdpyinfo): Update to 1.3.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo b1b3ab34b4 gnu: xcmsdb: Update to 1.0.5. 
* gnu/packages/xorg.scm (xcmsdb): Update to 1.0.5.
 2016-02-24 11:49:57 -05:00
Andy Wingo 9fab5cc9b5 gnu: x11perf: Update to 1.6.0. 
* gnu/packages/xorg.scm (x11perf): Update to 1.6.0.
 2016-02-24 11:49:57 -05:00
Andy Wingo 10814b66cc gnu: smproxy: Update to 1.0.6. 
* gnu/packages/xorg.scm (smproxy): Update to 1.0.6.
 2016-02-24 11:49:57 -05:00
Andy Wingo 350843a5be gnu: setxkbmap: Update to 1.3.1. 
* gnu/packages/xorg.scm (setxkbmap): Update to 1.3.1.
 2016-02-24 11:49:57 -05:00
Andy Wingo 849f01df4a gnu: sessreg: Update to 1.1.0. 
* gnu/packages/xorg.scm (sessreg): Update to 1.1.0.
 2016-02-24 11:49:57 -05:00
Andy Wingo 2c26245b39 gnu: randrproto: Update to 1.5.0. 
* gnu/packages/xorg.scm (randrproto): Update to 1.5.0.
 2016-02-24 11:49:57 -05:00
Andy Wingo 042777cee5 gnu: mkfontscale: Update to 1.1.2. 
* gnu/packages/xorg.scm (mkfontscale): Update to 1.1.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo c8012b798e gnu: libxkbfile: Update to 1.0.9. 
* gnu/packages/xorg.scm (libxkbfile): Update to 1.0.9.
 2016-02-24 11:49:57 -05:00
Andy Wingo ccca0efe13 gnu: libxdmcp: Update to 1.1.2. 
* gnu/packages/xorg.scm (libxdmcp): Update to 1.1.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo 34a9b4e5a1 gnu: libfs: Update to 1.0.7. 
* gnu/packages/xorg.scm (libfs): Update to 1.0.7.
 2016-02-24 11:49:57 -05:00
Andy Wingo 203593ddde gnu: libfontenc: Update to 1.1.3. 
* gnu/packages/xorg.scm (libfontenc): Update to 1.1.3.
 2016-02-24 11:49:57 -05:00
Andy Wingo f98e2a3ff2 gnu: libxshmfence: Update to 1.2. 
* gnu/packages/xorg.scm (libxshmfence): Update to 1.2.
 2016-02-24 11:49:57 -05:00
Andy Wingo d6c6dde8f5 gnu: kbproto: Update to 1.0.7. 
* gnu/packages/xorg.scm (kbproto): Update to 1.0.7.
 2016-02-24 11:49:57 -05:00
Andy Wingo 247ef1f52d gnu: iceauth: Update to 1.0.7. 
* gnu/packages/xorg.scm (iceauth): Update to 1.0.7.
 2016-02-24 11:49:57 -05:00
Andy Wingo 201bd16530 gnu: font-util: Update to 1.3.1. 
* gnu/packages/xorg.scm (font-util): Update to 1.3.1.
 2016-02-24 11:49:57 -05:00
Andy Wingo 235d701972 gnu: bdftopcf: Update to 1.0.5. 
* gnu/packages/xorg.scm (bdftopcf): Update to 1.0.5.
 2016-02-24 11:49:57 -05:00
Andy Wingo 521b1d888b gnu: libinput: Update to 1.1.902. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.1.902.
 2016-02-24 11:49:57 -05:00
Andy Wingo 34efce4ff4 gnu: libwacom: Propagate glib input. 
* gnu/packages/xdisorg.scm (libwacom): Propagate glib input.
 2016-02-24 11:49:57 -05:00
Andy Wingo ffc959939f gnu: mesa: Update to 11.0.9. 
* gnu/packages/gl.scm (mesa): Update to 11.0.9.
 2016-02-24 11:49:57 -05:00
Efraim Flashner 0e47b4e769 gnu: libvpx: Use 'modify-phases'. 
* gnu/packages/video.scm (libvpx)[arguments]: Use 'modify-phases'.
 2016-02-24 11:49:57 -05:00
Efraim Flashner fb197c0da4 gnu: libvpx: Update to 1.5.0. 
* gnu/packages/video.scm (libvpx): Update to 1.5.0.
 2016-02-24 11:49:57 -05:00
Efraim Flashner cda6aaf079 gnu: gst-plugins-base: Use 'modify-phases'. 
* gnu/packages/gstreamer.scm (gst-plugins-base)[arguments]: Use
'modify-phases'.
 2016-02-24 11:49:57 -05:00
宋文武 db12dac05c gnu: Add gst-plugins-bad. 
* gnu/packages/gstreamer.scm (gst-plugins-bad): New variable.
 2016-02-24 11:49:57 -05:00
宋文武 3673dace40 gnu: gst-libav: Update to 1.6.3. 
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.6.3.
 2016-02-24 11:49:57 -05:00
宋文武 30d34785b8 gnu: gst-plugins-ugly: Update to 1.6.3. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.6.3.
 2016-02-24 11:49:57 -05:00
宋文武 48caecb7f7 gnu: gst-plugins-good: Update to 1.6.3. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.6.3.
 2016-02-24 11:49:57 -05:00
宋文武 8cf39f7f33 gnu: gst-plugins-base: Update to 1.6.3. 
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.6.3.
 2016-02-24 11:49:57 -05:00
宋文武 120469d2fc gnu: gstreamer: Update to 1.6.3. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.6.3.
 2016-02-24 11:49:57 -05:00
Efraim Flashner 9dd61217c3 gnu: pulseaudio: Update to 8.0. 
* gnu/packages/pulseaudio.scm (pulseaudio): Update to 8.0.
 2016-02-24 11:49:57 -05:00
Ricardo Wurmus 6d415db23d gnu: r-topgo: Add missing input. 
* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
  "r-graph".
 2016-02-24 17:36:55 +01:00
Ricardo Wurmus d1dbde6ac1 gnu: Add r-graph. 
* gnu/packages/bioinformatics.scm (r-graph): New variable.
 2016-02-24 17:36:55 +01:00
Ricardo Wurmus e761beb9a9 gnu: Add r-org-mm-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus 16c53a1e26 gnu: Add r-org-dm-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus fefedf98cb gnu: Add r-org-ce-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Ricardo Wurmus 486da49143 gnu: Add r-org-hs-eg-db. 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
 2016-02-24 17:26:39 +01:00
Alex Kost 6caa4dfa37 Do not check package freshness during upgrade. 
Fixes <http://bugs.gnu.org/22740>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages.scm (waiting, ftp-open*, check-package-freshness): Remove.
* guix/scripts/package.scm (options->installable): Adjust accordingly.
* emacs/guix-main.scm (package->manifest-entry*): Likewise.
 2016-02-24 18:24:16 +03:00
Ludovic Courtès da35acf91d gnu: lsh: lshd now supports X11 forwarding. 
Reported by myglc2 <myglc2@gmail.com>.

* gnu/packages/lsh.scm (lsh)[inputs]: Add XAUTH.
[arguments]: Modify 'XAUTH_PROGRAM' macro in 'server_x11.c'.
 2016-02-24 13:11:50 +01:00
Ludovic Courtès 03b93ed70e gnu: lsh: Use 'modify-phases'. 
* gnu/packages/lsh.scm (lsh)[arguments]: Use 'modify-phases' instead of
'alist-cons-before'.
 2016-02-24 13:11:50 +01:00
Andy Wingo ea84bd88da gnu: services: Install policies for polkit service. 
* gnu/services/desktop.scm (polkit-etc-files): Add the polkit package
  itself to the list of packages to scan for .policy files.  This add
  support for pkexec.
 2016-02-24 10:16:54 +01:00
Efraim Flashner ebde7c7a9b mplayer: Use 'modify-phases'. 
* gnu/packages/video.scm (mplayer)[arguments]: Use 'modify-phases'.
[source]: Use https.
[home-page]: Use https.
 2016-02-24 10:33:05 +02:00
Efraim Flashner 778a6a8bf0 gnu: mplayer: Add codecs. 
* gnu/packages/video.scm (mplayer)[inputs]: Add libass, libmpeg2,
  libvdpau, libx264, opus.
 2016-02-24 09:43:51 +02:00
Efraim Flashner dec3e015eb gnu: dropbear: Update to 2015.71. 
* gnu/packages/ssh.scm (dropbear): Update to 2015.71.
 2016-02-24 09:18:14 +02:00
David Thompson dd90ed892a gnu: guile-next: Set correct native search paths. 
* gnu/packages/guile.scm (guile-next): Use the "2.2" directory for the
  load paths.
 2016-02-23 19:39:56 -05:00
Ludovic Courtès f2d8faff04 services: herd: Add missing newlines in error messages. 
* gnu/services/herd.scm (report-action-error): Add missing newlines in
messages.
 2016-02-23 13:03:23 +01:00
Andreas Enge 5a179844e7 gnu: Add xfce4-xkb-plugin. 
* gnu/packages/xfce.scm (xfce4-xkb-plugin): New variable.
  (xfce)[propagated-inputs]: Add it.
 2016-02-23 11:53:03 +01:00
Leo Famulari 8758efe0b0 gnu: telepathy-logger: Disable parallel tests. 
* gnu/packages/freedesktop.scm (telepathy-logger)[arguments]: Disable parallel
tests.
 2016-02-23 01:53:47 -05:00
Roel Janssen c1fc7a67e4 gnu: Add rdmd. 
* gnu/packages/ldc.scm (rdmd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-23 01:27:19 -05:00
Leo Famulari e9f68a647d gnu: modem-manager: Use HTTPS URL. 
* gnu/packages/freedesktop.scm (modem-manager)[source]: Use HTTPS URL.
 2016-02-23 00:15:05 -05:00
Leo Famulari fae58fe1d1 gnu: mpd: Update to 0.19.12. 
* gnu/packages/mpd.scm (mpd): Update t0 0.19.12.
 2016-02-22 20:16:25 -05:00
Leo Famulari a4c7c57c2c gnu: ncmpcpp: Udate to 0.7.3. 
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.3.
[inputs]: Add icu4c.
 2016-02-22 20:16:25 -05:00
Leo Famulari 9913c78a09 gnu: ncmpcpp: Use 'modify-phases'. 
* gnu/packages/mpd.scm (ncmpcpp)[arguments]: Use 'modify-phases'.
 2016-02-22 20:16:25 -05:00
Christopher Allan Webber 944d2b17b5 vm: Only pass "-enable-kvm" to qemu if /dev/kvm is present. 
Fixes <http://bugs.gnu.org/22633>.

* gnu/build/vm.scm (load-in-linux-vm): Only pass "-enable-kvm" flag to qemu
  if "/dev/kvm" is present.
* gnu/system/vm.scm (common-kvm-options): Same as above.
 2016-02-22 13:28:58 -08:00
Ludovic Courtès 8b16a5e199 gnu: pkg-config: Add non-HTTPS alternate URL. 
* gnu/packages/pkg-config.scm (%pkg-config)[source]: Add non-HTTPS URL.
 2016-02-22 22:11:37 +01:00
Andreas Enge 3297deedd1 gnu: Remove python2-pyqt-4. 
* gnu/packages/qt.scm (python2-pyqt-4): Delete variable. It depends on Qt 4,
  which does not receive security updates any more.
 2016-02-22 21:33:29 +01:00
Andreas Enge dbbb45dd73 gnu: Remove KDE 4. 
* gnu/packages/kde.scm (qjson): Move from here...
* gnu/packages/qt.scm (qjson): ...to here.
* gnu/packages/pumpio.scm: Drop inclusion of (gnu packages kde).
* gnu/packages/kde.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister it.
* gnu/packages/rdf.scm (soprano): Delete variable.

KDE 4 relies on Qt 4, which does not receive security updates any more.
 2016-02-22 21:30:56 +01:00
Efraim Flashner 5ad87e5bb5 gnu: python-patsy: Define 'python2-variant'. 
* gnu/packages/statistics.scm (python-patsy)[properties]: New field.
(python2-patsy): Use 'strip-python2-variant'.
 2016-02-22 21:59:02 +02:00
Efraim Flashner f4cd2ceabd gnu: python-patsy: Update to 0.4.1. 
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Update to 0.4.1.
 2016-02-22 21:59:02 +02:00
Mark H Weaver 5879f0d649 gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197. 
* gnu/packages/patches/qemu-CVE-2015-8619.patch,
  gnu/packages/patches/qemu-CVE-2016-1981.patch,
  gnu/packages/patches/qemu-CVE-2016-2197.patch,
  gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
 2016-02-22 10:26:22 -05:00
Rene Saavedra b784b1a9ea gnu: Add gnome-screenshot. 
* gnu/packages/gnome.scm (gnome-screenshot): New variable.
 2016-02-22 19:57:35 +08:00
Roel Janssen 8b15f42c73 gnu: libotf: Use mirror:// URL. 
* gnu/packages/fontutils.scm (libotf): Use mirror://savannah URL.
 2016-02-22 19:57:35 +08:00
Efraim Flashner 066651d412 gnu: c-ares: Update to 1.11.0. 
* gnu/packages/adns.scm (c-ares): Update to 1.11.0.
 2016-02-22 10:43:17 +02:00
Leo Famulari 1034331a11 gnu: parallel: Update to 20160122. 
* gnu/packages/parallel.scm (parallel): Update to 20160122.
 2016-02-22 02:31:38 -05:00
Leo Famulari 50a7963aeb gnu: python-acme: Generate and install documentation. 
* gnu/packages/tls.scm (acme)[arguments]: Add 'docs' phase.
[native-inputs]: Add python-sphinx, python-sphinxcontrib-programoutput,
python-sphinx-rtd-theme, python-setuptools, texinfo.
 2016-02-22 00:40:25 -05:00
Leo Famulari f9263d9a90 gnu: letsencrypt: Generate and install documentation. 
* gnu/packages/tls.scm (letsencrypt)[arguments]: Add 'docs' phase.
[native-inputs]: Add python2-sphinx, python2-sphinx-rtd-theme,
python2-sphinx-repoze-autointerface,
python2-sphinxcontrib-programoutput, texinfo.
 2016-02-22 00:40:25 -05:00
Leo Famulari 548d716539 gnu: Add python-sphinx-repoze-autointerface. 
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): New variables.
 2016-02-22 00:40:25 -05:00
Leo Famulari 3276517cdc gnu: Add python-sphinxcontrib-programoutput. 
* gnu/packages/python.scm (python-sphinxcontrib-programoutput,
python2-sphinxcontrib-programoutput): New variables.
 2016-02-22 00:40:25 -05:00
Christopher Allan Webber 2de98febb3 gnu: python-apipkg: Remove unzip dependency. 
Unzip was never used for this package.

* gnu/packages/python.scm (python-apipkg): Remove unzip dependency.
 2016-02-21 19:02:26 -08:00
Christopher Allan Webber 0c3b90d478 gnu: Add python-editor. 
* gnu/packages/python.scm (python-editor, python2-editor): New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 97e32948ea gnu: Add python-translitcodec. 
* gnu/packages/python.scm (python-translitcodec, python2-translitcodec):
  New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 22df6419f8 gnu: Add python-celery. 
* gnu/packages/python.scm (python-celery, python2-celery): New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber b6f0b9fb68 gnu: Add python-billiard. 
* gnu/packages/python.scm (python-billiard, python2-billiard):
  New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 7d38730507 gnu: Add python-kombu. 
* gnu/packages/python.scm (python-kombu, python2-kombu): New variables.
 2016-02-21 19:01:16 -08:00
Christopher Allan Webber 8dfceab779 gnu: Add python-amqp. 
* gnu/packages/python.scm (python-amqp, python2-amqp): New variables.
 2016-02-21 19:01:13 -08:00
Christopher Allan Webber 4cb122cd8d gnu: Add python-anyjson. 
* gnu/packages/python.scm (python-anyjson, python2-anyjson): New variables.
 2016-02-21 19:00:32 -08:00
Christopher Allan Webber aa6313d699 gnu: Add python-webtest. 
* gnu/packages/python.scm (python-webtest, python2-webtest):
  New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber 1cf536521d gnu: Add python-pyquery. 
* gnu/packages/python.scm (python-pyquery, python2-pyquery): New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber bb7518b1e8 gnu: Add python-pastedeploy. 
* gnu/packages/python.scm (python-pastedeploy, python2-pastedeploy):
  New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber 778a284be5 gnu: Add python-wsgiproxy2. 
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2):
  New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber ae00a41feb gnu: Add python-waitress. 
* gnu/packages/python.scm (python-waitress, python2-waitress): New variables.
 2016-02-21 18:59:39 -08:00
Christopher Allan Webber b32a1e47a9 gnu: Add python-beautifulsoup4. 
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
  New variables.
 2016-02-21 18:59:34 -08:00
Christopher Allan Webber 8fa58fc9a1 gnu: Add python-pytest-xdist. 
* gnu/packages/python.scm (python-pytest-xdist, python2-pytest-xdist):
  New variables.
 2016-02-21 18:59:30 -08:00
Christopher Allan Webber 16c84f9031 gnu: Add python2-execnet. 
* gnu/packages/python.scm (python2-execnet): New variable.
 2016-02-21 18:59:30 -08:00
Christopher Allan Webber e08739c3c6 gnu: Add python2-apipkg. 
* gnu/packages/python.scm (python2-apipkg): New variable.
 2016-02-21 18:59:30 -08:00
Christopher Allan Webber af5a460222 gnu: Add python-alembic. 
* gnu/packages/python.scm (python-alembic, python2-alembic): New variables.
 2016-02-21 18:59:29 -08:00
Ludovic Courtès 95001d4b46 download: Add 'url-fetch/tarbomb'. 
Suggested by Federico Beffa.
Fixes <http://bugs.gnu.org/22676>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/engineering.scm (broken-tarball-fetch): Remove.
(fastcap)[source](method): Use URL-FETCH/TARBOMB instead.
* gnu/packages/scheme.scm (broken-tarball-fetch): Remove.
(scmutils)[source](method): Use URL-FETCH/TARBOMB instead.
* guix/download.scm (url-fetch/tarbomb): New procedure, renamed from
'broken-tarball-fetch'.
 2016-02-22 00:36:24 +01:00
Andy Wingo d5df6fc755 gnu: icu4c: Fetch from sourceforge. 
* gnu/packages/icu4c.scm (icu4c): Download via sourceforge mirrors.  The
  previous URL,
  http://download.icu-project.org/files/icu4c/55.1/icu4c-55_1-src.tgz,
  redirects to sourceforge, which then fails because that redirects to
  https and as the original URL didn't start with HTTPS, gnutls wasn't
  included in the downloader.
 2016-02-21 21:21:09 +01:00
Andy Wingo 5cc3096c73 Update all sources from freedesktop.org to use https 
* gnu/packages/xorg.scm:
* gnu/packages/xdisorg.scm:
* gnu/packages/video.scm:
* gnu/packages/tls.scm:
* gnu/packages/python.scm:
* gnu/packages/pulseaudio.scm:
* gnu/packages/polkit.scm:
* gnu/packages/pdf.scm:
* gnu/packages/libcanberra.scm:
* gnu/packages/gtk.scm:
* gnu/packages/gstreamer.scm:
* gnu/packages/gnome.scm:
* gnu/packages/glib.scm:
* gnu/packages/ghostscript.scm:
* gnu/packages/freedesktop.scm:
* gnu/packages/fontutils.scm: Update all sources hosted on freedesktop
  to fetch tarballs via https.  freedesktop.org appears to have updated
  recently to redirect all http to https.  As an exception, we leave
  pkg-config like it is, because pkg-config is needed to build gnutls,
  and without gnutls we can't download https URLs.
 2016-02-21 21:11:49 +01:00
Efraim Flashner 466a7d706d gnu: libx264: Update to 20160220-2245. 
* gnu/packages/video.scm (libx264): Update to 20160220-2245.
 2016-02-21 16:16:54 +02:00
Efraim Flashner 62fe2d4752 gnu: xvid: Use 'modify-phases'. 
* gnu/packages/video.scm (xvid)[arguments]: Use 'modify-phases'.
 2016-02-21 16:16:54 +02:00
Efraim Flashner e05035c70d gnu: xvid: Update to 1.3.4. 
* gnu/packages/video.scm (xvid): Update to 1.3.4.
 2016-02-21 16:16:54 +02:00
Ludovic Courtès 5c7dd5ac3a linux-modules: Use normalized module names for 'modprobe.blacklist'. 
* gnu/build/linux-modules.scm (normalize-module-name): New procedure.
(file-name->module-name): Use it.
(module-black-list): Expound docstring.
 2016-02-21 13:04:10 +01:00
Mark H Weaver 57a41bfb3c gnu: linux-libre: Update to 4.4.2. 
* gnu/packages/linux.scm (linux-libre): Update to 4.4.2.
 2016-02-21 03:05:24 -05:00
Leo Famulari 9eb05bc381 gnu: python-enum34: Remove python-setuptools from inputs. 
* gnu/packages/python.scm (python-enum34)[inputs]: Remove
python-setuptools.
 2016-02-21 02:46:23 -05:00
Leo Famulari 68f1cdecf1 gnu: Don't use python-enum34 when building with python-3.4. 
* gnu/packages/docker.scm (docker-compose)[inputs]: Remove python-enum34.
* gnu/packages/python.scm (python-parse-type)[inputs]: Likewise.
(behave)[inputs]: Likewise.
(python-cryptography)[propagated-inputs]: Likewise.
(python2-cryptography)[propagated-inputs]: Add python2-enum34.
 2016-02-21 02:46:23 -05:00
Leo Famulari 820acd1bc3 gnu: Add python2-enum34. 
* gnu/packages/python.scm (python2-enum34): New variable.
 2016-02-21 02:46:23 -05:00
Leo Famulari d39ae1e5c6 gnu: python-enum34: Update to 1.1.0. 
* gnu/packages/python.scm (python-enum34): Update to 1.1.0.
[source]: Use pypi-uri.
 2016-02-21 02:46:23 -05:00
Leo Famulari 7bac09f45a gnu: dvtm: Update to 0.15. 
* gnu/packages/dvtm.scm (dvtm): Update to 0.15.
 2016-02-21 02:04:59 -05:00
Leo Famulari b860bbd9ee gnu: abduco: Update to 0.5. 
* gnu/packages/abduco.scm (abduco): Update to 0.5.
 2016-02-21 02:04:10 -05:00
Mark H Weaver 065932966f Revert "gnu: coreutils: Update URI for tail-inotify-race.patch." 
This reverts commit 1a51cbc825.
 2016-02-20 19:58:19 -05:00
Mark H Weaver 1f7309a6d1 gnu: dmd: Update URI of dmd-user-group.patch. 
* gnu/packages/admin.scm (dmd)[source]: Update URI of patch.
 2016-02-20 18:41:34 -05:00
Mark H Weaver 1a51cbc825 gnu: coreutils: Update URI for tail-inotify-race.patch. 
* gnu/packages/base.scm (coreutils)[source]: Update URI of patch.
 2016-02-20 18:41:34 -05:00
Ricardo Wurmus eeabe5a186 gnu: wine: Update to 1.9.4. 
* gnu/packages/wine.scm (wine): Update to 1.9.4.
[origin]: Remove snippet.
[arguments]: Set SHELL with make-flags.
 2016-02-20 22:38:33 +01:00
宋文武 56f5f921b4 gnu: nix: Update to 1.11.2. 
* gnu/packages/package-management.scm (nix): Update to 1.11.2.
 2016-02-20 18:22:26 +08:00
Roel Janssen 6ef0ec7600 gnu: Add libotf. 
* gnu/packages/fontutils.scm (libotf): New variable.
 2016-02-20 08:41:51 +08:00
Leo Famulari 4e58a402ff gnu: cpio: Add fix for CVE-2016-2037. 
* gnu/packages/patches/cpio-CVE-2016-2037.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/cpio.scm (cpio)[source]: Add patch.
 2016-02-19 18:04:15 -05:00
Leo Famulari 6399941555 gnu: rxvt-unicode: Update source URL. 
* gnu/packages/xdisorg.scm (rxvt-unicode)[source]: Update URL.
 2016-02-19 01:49:30 -05:00
Mark H Weaver 3729ff4183 gnu: glibc: Add fix for CVE-2015-7547. 
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc)[source]: Add patch.
 2016-02-19 00:42:10 -05:00
Christopher Baines 1c7f1fb133 gnu: Add perl-shell-command. 
* gnu/packages/perl.scm (perl-shell-command): New variable.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-02-18 21:16:25 +01:00
Alex Sassmannshausen 3c98acb79b gnu: guile-config: Update to 0.1.1. 
* gnu/packages/guile.scm (guile-config): Update to 0.1.1.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-02-18 20:40:12 +01:00
Efraim Flashner c8732e192e gnu: gccgo: Update to 4.9. 
* gnu/packages/gcc.scm (gccgo): Update to 4.9.
 2016-02-18 20:52:02 +02:00
Efraim Flashner 2a817081e2 gnu: aria2: Update to 1.20.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.20.0.
 2016-02-18 19:47:49 +02:00
Efraim Flashner 723a6910ca gnu: glpk: Update to 4.58. 
* gnu/packages/maths.scm (glpk): Update to 4.58.
 2016-02-18 15:35:28 +02:00
Efraim Flashner f6b1a8f7be gnu: ykclient: Update to 2.15. 
* gnu/packages/yubico.scm (ykclient): Update to 2.15.
 2016-02-18 11:47:19 +02:00
Efraim Flashner 58c5fb76f5 gnu: libyubikey: Update to 1.13. 
* gnu/packages/yubico.scm (libyubikey): Update to 1.13.
 2016-02-18 11:47:19 +02:00
Efraim Flashner e095be68dd gnu: yasm: Update to 1.3.0. 
* gnu/packages/yasm.scm (yasm): Update to 1.3.0.
 2016-02-18 11:47:19 +02:00
宋文武 83f64925ae gnu: retroarch: Update to 1.3.1. 
* gnu/packages/games.scm (retroarch): Update to 1.3.1.
 2016-02-18 17:32:51 +08:00
Nils Gillmann e11d14fe55 gnu: Add emacs-popup. 
* gnu/packages/emacs.scm (emacs-popup): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-02-18 11:59:03 +03:00
Rene Saavedra fdba447c62 gnu: Add gnome-backgrounds. 
* gnu/packages/gnome.scm (gnome-backgrounds): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-02-18 11:59:03 +03:00
Alex Kost 5dccaffe64 system: Add iproute to '%base-packages'. 
* gnu/system.scm (%base-packages): Add iproute.
 2016-02-18 11:59:03 +03:00
Leo Famulari 42e92e069a gnu: letsencrypt and python-acme: Update to 0.4.0. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.4.0.
(python-acme, python2-acme): Update to 0.4.0.
 2016-02-17 22:43:08 -05:00
David Thompson 50aaec25ca gnu: Add python-mako. 
* gnu/packages/python.scm (python-mako, python2-mako): New variables.
 2016-02-17 21:21:47 -05:00
Efraim Flashner 373dfe64a3 gnu: moe: Update to 1.8. 
* gnu/packages/moe.scm (moe): Update to 1.8.
 2016-02-17 16:25:46 +02:00
宋文武 972f4e5082 gnu: gnunet: Install NSS module. 
* gnu/packages/gnunet.scm (gnunet)[arguments]: Pass '--with-nssdir'.
 2016-02-17 20:57:55 +08:00
宋文武 dc05025165 gnu: Add gnome. 
* gnu/packages/gnome.scm (gnome): New variable.
 2016-02-17 20:57:55 +08:00
Fabian Harfert 7af1ca29f4 gnu: Add mate-menus. 
* gnu/packages/mate.scm (mate-menus): New variable.
 2016-02-17 13:39:41 +02:00
Fabian Harfert f2c7369abc gnu: Add libmateweather. 
* gnu/packages/mate.scm (libmateweather): New variable.
 2016-02-17 13:39:41 +02:00
Fabian Harfert 4b48a9fee0 gnu: Add mate-desktop. 
* gnu/packages/mate.scm (mate-desktop): New variable.
 2016-02-17 13:39:40 +02:00
Fabian Harfert cbfe494dd7 gnu: Add mate-themes. 
* gnu/packages/mate.scm (mate-themes): New variable.
 2016-02-17 12:14:02 +02:00
Fabian Harfert bb2fe79e6e gnu: Add mate-icon-theme. 
* gnu/packages/mate.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/mate.scm (mate-icon-theme): New variable.
 2016-02-17 12:14:02 +02:00
Alex Sassmannshausen 44a2bdf8e7 gnu: Add guile-config. 
* gnu/packages/guile.scm (guile-config): New variable.
 2016-02-16 11:24:08 -08:00
Efraim Flashner 1486d67ee8 gnu: qrencode: Update to 3.4.4. 
* gnu/packages/aidc.scm (qrencode): Update to 3.4.4.
 2016-02-16 19:28:00 +02:00
Andreas Enge 9bd9486df4 gnu: pari-gp: Build documentation. 
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Add texlive-minimal.
  [arguments]: Modify make-flags to build documentation.
 2016-02-16 17:11:28 +01:00
Andreas Enge 6b5eb8406c gnu: Add texlive-minimal. 
* gnu/packages/texlive.scm (texlive-texmf-minimal, texlive-minimal):
  New variables.
 2016-02-16 16:44:36 +01:00
Efraim Flashner b736776255 gnu: hydrogen: Update to 0.9.6.1. 
* gnu/packages/music.scm (hydrogen): Update to 0.9.6.1.
[build-system]: Switch to cmake-build-system.
[arguments]: Enable configure and tests, remove custom phases.
[native-inputs]: Remove python-2, scons. Add cppunit.
[inputs]: Add libarchive, lrdf.
 2016-02-16 17:24:45 +02:00
Ricardo Wurmus 578b05d99e gnu: htseq: Add PySam to inputs. 
* gnu/packages/bioinformatics.scm (htseq)[inputs]: Add "python2-pysam".
 2016-02-16 15:32:15 +01:00
Ricardo Wurmus d15d981ea2 gnu: Add StringTie. 
* gnu/packages/bioinformatics.scm (stringtie): New variable.
 2016-02-16 14:51:10 +01:00
Ricardo Wurmus 469d6589e3 gnu: Add Augeas. 
* gnu/packages/augeas.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2016-02-16 14:41:25 +01:00
Efraim Flashner c5a6e33b56 gnu: gpsbabel: Use 'modify-phases'. 
* gnu/packages/gps.scm (gpsbabel)[arguments]: Use 'modify-phases'.
 2016-02-16 12:13:01 +02:00
Efraim Flashner 6f1c3b806a gnu: gpsbabel: Update to 1.5.2. 
* gnu/packages/gps.scm (gpsbabel): Update to 1.5.2.
[inputs]: Remove qt-4, add qt.
 2016-02-16 11:10:45 +02:00
Efraim Flashner d694230abe gnu: librecad: Use 'modify-phases'. 
* gnu/packages/engineering.scm (librecad)[arguments]: Use 'modify-phases'.
 2016-02-16 09:30:40 +02:00
Efraim Flashner d8a4b93253 gnu: librecad: Update to 2.0.9. 
* gnu/packages/engineering.scm (librecad): Update to 2.0.9.
[inputs]: Use qt instead of qt-4.
 2016-02-16 08:53:18 +02:00
Leo Famulari d4e21fbbe0 gnu: iftop: Fix license. 
* gnu/packages/admin.scm (iftop)[license]: Correct 'gpl3' to 'gpl2+'.
 2016-02-15 21:37:07 -05:00
Leo Famulari 6ac2af78e0 gnu: shntool: Fix license. 
* gnu/packages/audio.scm (shntool)[license]: Correct 'gpl3+' to 'gpl2+'
and add 'x11'.
 2016-02-15 21:36:46 -05:00
Leo Famulari 8763fdf8a5 gnu: pioneers: Fix license. 
* gnu/packages/games.scm (pioneers)[license]: Correct 'gpl3+' to 'gpl2+'.
 2016-02-15 21:14:18 -05:00
Rodger Fox 7e2e115501 gnu: Add pioneers. 
* gnu/packages/games.scm (pioneers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-15 20:12:08 -05:00
Leo Famulari be6f30047e gnu: vdirsyncer: Update to 0.9.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.9.0.
 2016-02-15 18:48:36 -05:00
Leo Famulari a9da8fec62 gnu: python-click-log: Update to 0.1.3. 
* gnu/packages/python.scm (python-click-log): Update to 0.1.3.
 2016-02-15 18:48:36 -05:00
Leo Famulari c834cf82b6 gnu: python-atomicwrites: Update to 0.1.9. 
* gnu/packages/python.scm (python-atomicwrites): Update to 0.1.9.
 2016-02-15 18:48:36 -05:00
Leo Famulari 97bbc48023 gnu: python-lxml: Update to 3.5.0. 
* gnu/packages/python.scm (python-lxml, python2-lxml): Update to 3.5.0.
[source]: Use pypi-uri.
 2016-02-15 18:48:36 -05:00
Tobias Geerinckx-Rice 85a94d296e gnu: redshift: Update to 1.11. 
* gnu/packages/xdisorg.scm (redshift): Update to 1.11.
 2016-02-15 23:37:21 +01:00
Christopher Allan Webber a4ba286baf gnu: python-sqlalchemy: Update to 1.0.12. 
* gnu/packages/python.scm (python-sqlalchemy): Update to 1.0.12.
 2016-02-15 14:02:06 -08:00
Pjotr Prins 552f5c009e gnu: Add slurm. 
* gnu/packages/parallel.scm (slurm): New variable.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm: Introduce license name space.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2016-02-15 22:47:47 +01:00
Ben Woodcroft e70f7a2306 gnu: prodigal: Update to 2.6.3. 
* gnu/packages/bioinformatics.scm (prodigal): Update to 2.6.3.
 2016-02-16 07:18:59 +10:00
Efraim Flashner 7fe8ad7616 gnu: polkit-qt: Build with qt-5. 
*gnu/packages/polkit.scm (polkit-qt)[propagated-inputs]: Use qt.
 2016-02-15 20:22:28 +02:00
Efraim Flashner d1cba090a8 gnu: bazaar: Update to 2.7.0. 
* gnu/packages/version-control.scm (bazaar): Update to 2.7.0.
 2016-02-15 19:53:27 +02:00
Ricardo Wurmus 258c0a365e gnu: r-annotationdbi: Update to 1.32.3. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.32.3.
 2016-02-15 16:11:22 +01:00
Ricardo Wurmus 3d7a157c62 gnu: Add audit. 
* gnu/packages/admin.scm (audit): New variable.
 2016-02-15 16:06:09 +01:00
Efraim Flashner fdc1b2fd65 gnu: vera: Update to 1.23. 
* gnu/packages/dictionaries.scm (vera): Update to 1.23.
 2016-02-15 15:49:13 +02:00
Efraim Flashner e0ef3708f7 gnu: nano: Update to 2.5.2. 
* gnu/packages/nano.scm (nano): Update to 2.5.2.
 2016-02-15 15:49:13 +02:00
Efraim Flashner 4bc0c634b3 gnu: bitcoin-core: Update to 0.11.2. 
* gnu/packages/finance.scm (bitcoin-core): Update to 0.11.2.
[native-inputs]: Use python-2 instead of python-wrapper.
 2016-02-15 15:46:00 +02:00
Efraim Flashner 87062f75e4 gnu: owncloud-client: Update to 2.1.1. 
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.1.1.
 2016-02-15 15:46:00 +02:00
Ben Woodcroft cf6edaba74 gnu: vsearch: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0.
[origin]: Adapt to changes in bundling of cityhash.
 2016-02-15 22:54:25 +10:00
Ben Woodcroft a64a8c465d gnu: cityhash: Install citycrc.h. 
* gnu/packages/textutils.scm (cityhash)[arguments]: Install citycrc.h.
[version]: Use standardised format, increment to 1.1-2.
 2016-02-15 22:54:12 +10:00
Mark H Weaver e86409c566 gnu: graphite2: Update to 1.3.5. Update home-page and source URI. 
* gnu/packages/fontutils.scm (graphite2): Update to 1.3.5.
  [source, home-page]: Update to reflect upstream move to github.
 2016-02-15 02:51:35 -05:00
Mark H Weaver 4373278ea5 gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805]. 
Note: The previous fix for CVE-2015-7805 was incomplete.

* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26.
  [source]: Remove patches.
 2016-02-15 02:51:35 -05:00
Christopher Allan Webber ea79dbb240 gnu: libgcrypt: Update to 1.6.5 [fixes CVE-2015-7511]. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.5.
 2016-02-15 02:51:35 -05:00
Leo Famulari 68bcac6b62 gnu: btrfs-progs: Fix license. 
Reported by Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com>

* gnu/packages/linux.scm (btrfs-progs)[license]: Add GPL2 to list of licenses.
 2016-02-14 21:04:05 -05:00
Nils Gillmann acb381566c gnu: font-terminus: Update to 4.40 
* gnu/packages/fonts.scm (font-terminus): Update to 4.40.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-14 20:46:49 -05:00
Andreas Enge b6b07d9de3 gnu: python-ly: Update to 0.9.3. 
* gnu/packages/python.scm (python-ly): Update to 0.9.3.
 2016-02-14 21:49:56 +01:00
Mark H Weaver b042bdc8fd gnu: lxqt: Update source URLs to use HTTPS. 
* gnu/packages/lxqt.scm (libqtxdg, liblxqt, lxqt-common)
  (lxqt-session)[source]: Use HTTPS URLs.
 2016-02-14 08:48:13 -05:00
Efraim Flashner 38b209110e gnu: openbox: Update to 3.6.1. 
* gnu/packages/openbox.scm (openbox): Update to 3.6.1.
 2016-02-14 09:51:47 +02:00
Efraim Flashner 8826fb241e gnu: postgresql: Update to 9.3.11. [fixes CVE-2015-{5288,5289},CVE-2016-{0766,0773}] 
* gnu/packages/databases.scm (postgresql): Update to 9.3.11.
 2016-02-14 09:34:27 +02:00
Jochem Raat 3c697ffda3 gnu: Add baobab. 
* gnu/packages/gnome.scm (baobab): New variable.
 2016-02-13 21:09:42 -05:00
Al McElrath aa0edd3f5b gnu: Add pianobar. 
* gnu/packages/music.scm (pianobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-13 18:40:04 -05:00
Christopher Allan Webber cb34dc6c3e gnu: Add python-wtforms 
* gnu/packages/python.scm (python-wtforms, python2-wtforms): New variables.
 2016-02-13 15:03:10 -08:00
Alex Kost 75cd4b053e gnu: iproute: Update to 4.4.0. 
* gnu/packages/linux.scm (iproute): Update to 4.4.0.
 2016-02-13 20:39:34 +03:00
Alex Kost b53e44fb4e gnu: iproute: Use 'modify-phases'. 
* gnu/packages/linux.scm (iproute)[arguments]: Use 'modify-phases'.
 2016-02-13 20:39:34 +03:00
Andreas Enge a42d99f284 gnu: calibre: Update to 2.51.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.51.0.
 2016-02-13 14:34:50 +01:00
Andreas Enge ec4130b7e7 gnu: gnuplot: Update to 5.0.2. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
 2016-02-13 13:37:49 +01:00
Jan Nieuwenhuizen 8c1088bb0f gnu: lablgtk: Build cmxa libraries. 
* gnu/packages/ocaml.scm (lablgtk)[arguments]: Add the make target "opt"
  to also build *.cmxa files.
 2016-02-13 09:23:20 +01:00
Jan Nieuwenhuizen 6372e336a2 gnu: ocaml: Set search path. 
* gnu/packages/ocaml.scm (ocaml): Register OCAMLPATH as a search path.
 2016-02-13 09:21:58 +01:00
Jan Nieuwenhuizen a747baba00 gnu: Add ocaml-findlib. 
* gnu/packages/ocaml.scm (ocaml-findlib): New variable.
* gnu/packages/patches/ocaml-findlib-make-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Register it.
 2016-02-13 09:15:55 +01:00
Mark H Weaver 3a7261bf96 gnu: gnupg: Add upstream fix for test failures on x86_64. 
Fixes <https://debbugs.gnu.org/22558>.

* gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New
  file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg)[source]: Add patch.
 2016-02-12 21:02:24 -05:00
Jan Nieuwenhuizen 511539ae81 gnu: Add tclxml. 
* gnu/packages/patches/tclxml-3.2-install.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tclxml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-12 19:13:05 -05:00
Leo Famulari 6cefd53d3e gnu: Split acme into python-acme and python2-acme. 
* gnu/packages/tls.scm (acme): Split variable into...
(python-acme, python2-acme): ...both Python variants.
(letsencrypt)[propagated-inputs]: Update user of renamed variable.
 2016-02-12 18:50:32 -05:00
Leo Famulari 8ad4ae204f gnu: python-wheel: Define 'python2-variant'. 
* gnu/packages/python.scm (python-wheel)[properties]: New field.
(python2-wheel): Use 'strip-python2-variant'.
(python2-requests): Take the result of 'package-with-python2' directly.
* gnu/packages/openstack.scm (python2-requests-mock): Likewise.
(python2-oslosphinx): Likewise.
 2016-02-12 18:50:32 -05:00
Leo Famulari a14600ecfa gnu: python-jsonschema: Define 'python2-variant'. 
* gnu/packages/python.scm (python-jsonschema)[properties]: New field.
(python2-jsonschema): Use 'strip-python2-variant'.
* gnu/packages/openstack.scm (python2-tempest-lib): Take the result of
'package-with-python2' directly.
 2016-02-12 18:50:32 -05:00
Leo Famulari 519e2f4fde gnu: python-cryptography: Define 'python2-variant'. 
* gnu/packages/python.scm (python-cryptography)[properties]: New field.
(python2-cryptography): Use 'strip-python2-variant'.
(python2-pyopenssl): Take the result of 'package-with-python2' directly.
 2016-02-12 18:50:32 -05:00
Jan Nieuwenhuizen 50fe318c3c gnu: Add tcllib. 
* gnu/packages/tcl.scm (tcllib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-12 18:01:05 -05:00
Jan Nieuwenhuizen e4c38581f3 gnu: tcl: Use tcl/tk license. 
* gnu/packages/tcl.scm (tcl)[license]: Use the tcl/tk license variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-12 18:01:05 -05:00
Ricardo Wurmus 0d0bcaa08e gnu: macs: Update to 2.1.0.20151222. 
* gnu/packages/bioinformatics.scm (macs): Update to 2.1.0.20151222.
 2016-02-12 18:16:16 +01:00
Ricardo Wurmus 43ec07f17c gnu: macs: Use "pypi-uri". 
* gnu/packages/bioinformatics.scm (macs)[source]: Use "pypi-uri" to
  build source URI.
 2016-02-12 18:16:16 +01:00
Ricardo Wurmus b074e7d486 gnu: python2-fastlmm: Update to 0.2.21. 
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.21.
 2016-02-12 10:58:46 +01:00
Ricardo Wurmus 3f2e9675fb gnu: python2-pysnptools: Update to 0.3.5. 
* gnu/packages/python.scm (python2-pysnptools): Update to 0.3.5.
 2016-02-12 10:58:46 +01:00
Ricardo Wurmus ef9b4c04a4 gnu: python-numpy-bootstrap: Update to 1.10.4. 
* gnu/packages/python.scm (python-numpy-bootstrap): Update to 1.10.4.
 2016-02-12 10:58:46 +01:00
Ricardo Wurmus 1b96f069e6 gnu: python-pandas: Update to 0.16.2. 
* gnu/packages/python.scm (python-pandas): Update to 0.16.2.
 2016-02-12 10:58:46 +01:00
Ni* Gillmann 3ccdd4305e gnu: Add gnunet-gtk. 
* gnu/packages/gnunet.scm (gnunet-gtk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2016-02-12 10:17:05 +01:00
Ricardo Wurmus 1eb6bbd8c0 gnu: gnunet: Add gstreamer and plugins to inputs. 
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add "gstreamer" and
  "gst-plugins-base".
 2016-02-12 08:09:19 +01:00