f2a3ff8591
gnu: git-annex: Build with MagicMime support.
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git-annex has a mechanism for configuring whether a file is added to the annex
or stored in git. Building with MagicMime support makes it possible to
condition the behavior on a file's MIME type.
* gnu/packages/haskell-apps.scm (git-annex)[inputs]: Add ghc-magic.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:27:32 +02:00
e405912c20
gnu: Add ghc-magic.
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* gnu/packages/haskell-xyz.scm (ghc-magic): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:27:27 +02:00
7e772cb66d
gnu: git-annex: Update license.
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* gnu/packages/haskell-apps.scm (git-annex)[license]: Update main license to
AGPLv3+ and include other licenses mentioned in the package's COPYRIGHT file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:27:10 +02:00
0074844366
pack: Provide a meaningful "repository name" for Docker.
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Previously, images produced by 'guix pack -f docker' would always show
up as "profile" in the output of 'docker images'. With this change,
'docker images' shows a name constructed from the packages found in the
image--e.g., "bash-coreutils-grep-sed".
* guix/docker.scm (canonicalize-repository-name): New procedure.
(generate-tag): Remove.
(manifest): Add optional 'tag' parameter and honor it.
(repositories): Likewise.
(build-docker-image): Add #:repository parameter and pass it to
'manifest' and 'repositories'.
* guix/scripts/pack.scm (docker-image)[build]: Compute 'tag' and pass it
as #:repository to 'build-docker-image'.
2019-09-16 10:25:31 +02:00
9bbaf2ae72
pack: Add packages in the order in which they appear on the command line.
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* guix/scripts/pack.scm (guix-pack)[manifest-from-args](packages):
Reverse order of packages taken from OPTS.
2019-09-16 10:25:16 +02:00
ec36339dfd
services: certbot: Add --manual-public-ip-logging-ok for manual challenges
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* gnu/services/certbot.scm (certbot-command): Add
--manual-public-ip-logging-ok flag to the certbot command when doing a
manual challenge.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-16 10:22:35 +02:00
fb6e550d6b
gnu: retroarch: Update to 1.7.8.4.
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* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.4.
2019-09-16 08:25:04 +02:00
eca0f3d070
gnu: mgba: Update to 0.7.3.
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* gnu/packages/emulators.scm (mgba): Update to 0.7.3.
2019-09-16 08:25:04 +02:00
d80a15696b
gnu: Add r-variancepartition.
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* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
2019-09-15 22:57:47 +02:00
2a360cf6ac
gnu: Add r-wavetiling.
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* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
2019-09-15 22:54:21 +02:00
f5349b4d5a
gnu: Add r-genomegraphs.
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* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
2019-09-15 22:51:52 +02:00
4c63eeb8a4
gnu: Add r-oligo.
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* gnu/packages/bioconductor.scm (r-oligo): New variable.
2019-09-15 22:50:31 +02:00
d6a5d9b24f
gnu: Add r-affxparser.
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* gnu/packages/bioconductor.scm (r-affxparser): New variable.
2019-09-15 22:50:25 +02:00
df8576e5c9
gnu: Add r-variantfiltering.
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* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
2019-09-15 22:41:03 +02:00
fc3719cc0f
gnu: Add r-shinythemes.
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* gnu/packages/cran.scm (r-shinythemes): New variable.
2019-09-15 22:40:25 +02:00
41b8b05c9e
gnu: Add r-shinytree.
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* gnu/packages/cran.scm (r-shinytree): New variable.
2019-09-15 22:33:50 +02:00
4112ff7e74
gnu: Add js-requirejs.
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* gnu/packages/javascript.scm (js-requirejs): New variable.
2019-09-15 21:19:53 +02:00
bb0024dc69
gnu: Add r-reqon.
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* gnu/packages/bioconductor.scm (r-reqon): New variable.
2019-09-15 21:07:57 +02:00
e5dfcd8e26
gnu: Add r-seqbias.
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* gnu/packages/bioconductor.scm (r-seqbias): New variable.
2019-09-15 21:07:56 +02:00
12105c6c3a
gnu: Add r-affycoretools.
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* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
2019-09-15 20:58:26 +02:00
01c7ba9982
gnu: Add r-oligoclasses.
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* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
2019-09-15 20:58:26 +02:00
15184fb386
gnu: Add r-reportingtools.
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* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
2019-09-15 20:58:25 +02:00
83b4209122
gnu: Add r-pfam-db.
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* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
2019-09-15 20:57:26 +02:00
4ca2d6c1a6
gnu: Add r-affycontam.
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* gnu/packages/bioconductor.scm (r-affycontam): New variable.
2019-09-15 20:53:27 +02:00
5094aa9472
gnu: Add r-affycompatible.
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* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
2019-09-15 20:53:21 +02:00
5cf940de21
gnu: Add r-affycomp.
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* gnu/packages/bioconductor.scm (r-affycomp): New variable.
2019-09-15 20:53:14 +02:00
53b1e10f23
gnu: Add r-affydata.
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* gnu/packages/bioconductor.scm (r-affydata): New variable.
2019-09-15 20:53:01 +02:00
853211a51b
gnu: Add r-timeseriesexperiment.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
2019-09-15 20:42:41 +02:00
739b2d10f0
gnu: Add r-wavcluster.
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* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
2019-09-15 20:41:01 +02:00
d77e69e9e1
gnu: r-spam: Update to 2.3-0.
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* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
2019-09-15 16:15:37 +02:00
e48e476f41
gnu: r-feather: Update to 0.3.5.
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* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
2019-09-15 16:15:37 +02:00
21fc601295
gnu: emacs-zerodark-theme: Update to 4.6.
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* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6.
[source]: Update to new source uri.
2019-09-15 15:29:18 +03:00
991c44109f
gnu: Add yubico-pam.
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* gnu/packages/authentication.scm (yubico-pam): New variable.
2019-09-15 09:28:24 +02:00
9eac315069
gnu: r-delayedmatrixstats: Update to 1.6.1.
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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
2019-09-14 23:39:39 +02:00
82e343d14a
gnu: r-rhdf5lib: Update to 1.6.1.
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* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
2019-09-14 23:39:25 +02:00
cd25e29616
gnu: r-rtracklayer: Update to 1.44.4.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
2019-09-14 23:39:20 +02:00
146f0ba5d1
gnu: r-genomicranges: Update to 1.36.1.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
2019-09-14 23:39:12 +02:00
7f518ef70b
gnu: r-s4vectors: Update to 0.22.1.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
2019-09-14 23:39:08 +02:00
11f973e093
gnu: r-mixomics: Update to 6.8.4.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
2019-09-14 23:39:03 +02:00
f8fb5b75c9
gnu: r-gtrellis: Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
2019-09-14 23:38:58 +02:00
ec0270b1e9
gnu: r-regioner: Update to 1.16.4.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
2019-09-14 23:38:51 +02:00
cd75c487c8
gnu: Add emacs-elixir-mode.
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* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
2019-09-14 19:44:40 +02:00
fda8ed0eb1
gnu: wine-staging: Update to 4.16.
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* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16.
* gnu/packages/wine.scm (wine-staging): Update to 4.16.
2019-09-14 13:01:28 +02:00
6e377b8893
import/utils: beautify-description: Recognize more fragments.
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* guix/import/utils.scm (beautify-description): Handle additional common
initial sentence fragments in descriptions.
2019-09-14 00:37:47 +02:00
981dcc3b0c
gnu: r-tidyr: Update to 1.0.0.
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* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0.
[propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs.
2019-09-14 00:37:47 +02:00
17f3960f28
gnu: r-diffusionmap: Update to 1.2.0.
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* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
2019-09-14 00:37:46 +02:00
fd399b7a83
gnu: r-seqinr: Update to 3.6-1.
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* gnu/packages/cran.scm (r-seqinr): Update to 3.6-1.
2019-09-14 00:37:46 +02:00
f5b1354fdb
gnu: Add r-lifecycle.
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* gnu/packages/cran.scm (r-lifecycle): New variable.
2019-09-14 00:37:46 +02:00
cd3ba9c8c7
gnu: r-huge: Update to 1.3.3.
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* gnu/packages/cran.scm (r-huge): Update to 1.3.3.
2019-09-14 00:37:46 +02:00
ac50956f31
gnu: r-tidytree: Update to 0.2.7.
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* gnu/packages/cran.scm (r-tidytree): Update to 0.2.7.
2019-09-14 00:37:46 +02:00
Kyle Meyer