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Author SHA1 Message Date
Ben Woodcroft 81f3e0c1f3 gnu: Add fxtract. 
* gnu/packages/bioinformatics.scm (fxtract): New variable.
 2016-01-12 07:49:19 +10:00
Efraim Flashner ec70fec559 gnu: youtube-dl: Update to 2016.01.09. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
 2016-01-11 13:30:50 +02:00
Andreas Enge 4879d2ff66 gnu: gp2c: Update to 0.0.9pl5. 
* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
 2016-01-11 11:24:52 +01:00
Andreas Enge 4a6635f353 gnu: texlive: Use modify-phases syntax. 
* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
  syntax.
 2016-01-11 10:59:29 +01:00
Efraim Flashner a916c82649 gnu: man-pages: Update to 4.04. 
* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
 2016-01-11 09:37:50 +02:00
Ben Woodcroft 9b9b7ffd8e gnu: bedtools: Update to 2.25.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'.  Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-01-11 00:36:13 +10:00
Ben Woodcroft 6573ac82ad gnu: bedtools: Use modify-phases. 
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
 2016-01-11 00:36:13 +10:00
Andreas Enge 695bea9803 gnu: r: Update to 3.2.3. 
* gnu/packages/statistics.scm (r): Update to 3.2.3.
 2016-01-09 23:18:28 +01:00
Andreas Enge 13035f5a03 gnu: icecat: Update to 38.5.2-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
 2016-01-09 22:51:28 +01:00
Ben Woodcroft 4c40fa0229 gnu: ruby-2.1: Update to 2.1.8. 
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
 2016-01-09 14:53:58 +10:00
Leo Famulari f32274a71e gnu: i2c-tools: Update source and home-page URLs. 
* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
 2016-01-08 16:42:27 -05:00
Leo Famulari 3a04d5d4e4 gnu: lm-sensors: Update source and home-page URLs. 
* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
 2016-01-08 16:42:27 -05:00
Mark H Weaver bea25ae83c gnu: nss: Update to 3.21 [fixes CVE-2015-7575]. 
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
  [arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
 2016-01-08 15:29:50 -05:00
Mathieu Lirzin 2409f37f28 gnu: Add missing (gnu packages gcc) import. 
* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
 2016-01-08 14:18:46 +01:00
Mathieu Lirzin 9ef824c10e gnu: xterm: Update to 322. 
* gnu/packages/xorg.scm (xterm): Update to 322.
 2016-01-08 14:12:29 +01:00
宋文武 a65e26f091 gnu: epiphany: Update to 3.18.2. 
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
 2016-01-08 17:34:08 +08:00
宋文武 19e5258d84 gnu: webkitgtk: Update to 2.10.4. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
 2016-01-08 17:34:08 +08:00
Pjotr Prins c8d969b58f gnu: Add Pfff. 
* gnu/packages/textutils.scm (pfff): New variable.
 2016-01-07 21:13:35 +01:00
Alex Kost fbbaa4dde8 gnu: mpv: Remove 'samba' input. 
This is a heavy-weight and uncommon feature.  See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>.

* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
 2016-01-07 22:30:18 +03:00
Ricardo Wurmus cb933df6da gnu: Add genomation. 
* gnu/packages/bioinformatics.scm (r-genomation): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus 03ea5a357e gnu: Add seqPattern. 
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus c43a011de3 gnu: Add impute. 
* gnu/packages/bioinformatics.scm (r-impute): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus c63cef6699 gnu: Add BSgenome. 
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus fbf6045e33 gnu: Add plotly. 
* gnu/packages/statistics.scm (r-plotly): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus a28d646b63 gnu: Add viridis. 
* gnu/packages/statistics.scm (r-viridis): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus d547ce5e70 gnu: Add topGO. 
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus e05c37da4a gnu: Add matrixStats. 
* gnu/packages/statistics.scm (r-matrixstats): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus 3703ffb41f gnu: Add R.rsp. 
* gnu/packages/statistics.scm (r-r-rsp): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus a63efbb453 gnu: Add R.cache. 
* gnu/packages/statistics.scm (r-r-cache): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus 9c94b53b5b gnu: Add R.utils. 
* gnu/packages/statistics.scm (r-r-utils): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus c8c75a8d88 gnu: Add R.oo. 
* gnu/packages/statistics.scm (r-r-oo): New variable.
 2016-01-07 17:18:17 +01:00
Ricardo Wurmus 8bfe007c9c gnu: Add R.methodsS3. 
* gnu/packages/statistics.scm (r-r-methodss3): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus a69a593595 gnu: Add base64enc. 
* gnu/packages/statistics.scm (r-base64enc): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus a8227e4ae9 gnu: Add DT. 
* gnu/packages/statistics.scm (r-dt): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus d706257b5b gnu: Add SparseM. 
* gnu/packages/statistics.scm (r-sparsem): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus fb25d8803f gnu: Add GO.db. 
* gnu/packages/bioinformatics.scm (r-go-db): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 2fd7c04984 gnu: Add GenomicFeatures. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 317755ff0f gnu: Add rtracklayer. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus d8a828af78 gnu: Add GenomicAlignments. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6e76dda2d0 gnu: Add SummarizedExperiment. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus f8d74f7018 gnu: Add Rsamtools. 
* gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus bf15935337 gnu: Add Biostrings. 
* gnu/packages/bioinformatics.scm (r-biostrings): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus e91d362e48 gnu: Add BiocParallel. 
* gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus c465fa72ed gnu: Add biomaRt. 
* gnu/packages/bioinformatics.scm (r-biomart): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 8b7bce740d gnu: Add AnnotationDbi. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 555e3399dc gnu: Add Biobase. 
* gnu/packages/bioinformatics.scm (r-biobase): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus bc899123e7 gnu: Add snow. 
* gnu/packages/statistics.scm (r-snow): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 6b82f56cf9 gnu: Add futile.logger. 
* gnu/packages/statistics.scm (r-futile-logger): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus b9ff33b50e gnu: Add futile.options. 
* gnu/packages/statistics.scm (r-futile-options): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus ca65d387fd gnu: Add lambda.r. 
* gnu/packages/statistics.scm (r-lambda-r): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 543ded3619 gnu: Add r-xml. 
* gnu/packages/statistics.scm (r-xml): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus cefaa79c9e gnu: Add RCurl. 
* gnu/packages/statistics.scm (r-rcurl): New variable.
 2016-01-07 17:18:16 +01:00
Ricardo Wurmus 21e4d6a9cf gnu: Add RSQLite. 
* gnu/packages/statistics.scm (r-rsqlite): New variable.
 2016-01-07 17:18:15 +01:00
Raimon Grau fe9451c50a gnu: Add xmlstarlet. 
* gnu/packages/xml.scm (xmlstarlet): New variable.
 2016-01-07 16:00:00 +01:00
宋文武 29e255ca83 gnu: zita-convolver: Drop the '-march=native' optimization. 
* gnu/packages/audio.scm (zita-convolver)[source]: Add snippet.
 2016-01-07 22:47:32 +08:00
宋文武 6dff495580 gnu: zita-resampler: Drop the '-march=native' optimization. 
* gnu/packages/audio.scm (zita-resampler)[source]: Add snippet.
 2016-01-07 22:47:32 +08:00
Ben Woodcroft 7d3a1a2dd2 gnu: Add ruby-ansi. 
* gnu/packages/ruby.scm (ruby-ansi): New variable.
 2016-01-07 15:36:05 +01:00
Ricardo Wurmus 5dfd276602 gnu: edirect: Update to 3.50. 
* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
 2016-01-07 11:25:24 +01:00
Leo Famulari 62339e2d49 gnu: w3m: Enable SSL, disable broken protocols and ciphers. 
Fixes <http://bugs.gnu.org/16791>.

* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
 2016-01-07 02:35:38 -05:00
Leo Famulari e6352001c4 gnu: w3m: Update patch to use '-p1'. 
* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
 2016-01-07 02:35:38 -05:00
Ludovic Courtès d4aaf95401 build-system/gnu: Make 'package-with-explicit-inputs' idempotent. 
* guix/build-system/gnu.scm (package-with-explicit-inputs): Use
  'ensure-keyword-arguments' instead of appending to ARGS.
* gnu/packages/commencement.scm (static-bash-for-glibc): Add missing
  #:guile argument.
 2016-01-06 23:08:22 +01:00
Ludovic Courtès dff9141c5e gnu: guix: Update development snapshot to f888c0b. 
* gnu/packages/package-management.scm (guix-devel): Update to f888c0b.
 2016-01-06 23:08:22 +01:00
Eric Bavier c7b08410de gnu: gmsh: Update to 2.11.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
  [arguments]: Replace 'check phase.
 2016-01-06 10:49:23 -06:00
Ludovic Courtès 7b78f359d1 gnu: sudo: Use /var/run/sudo instead of /run/sudo. 
* gnu/packages/admin.scm (sudo)[arguments]: Pass
--with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on
GuixSD whereas /run is not.
 2016-01-06 15:51:31 +01:00
Ludovic Courtès 3c4c8c3e06 services: cleanup-service: Catch 'system-error' instead of everything. 
This makes sure that critical errors such as unbound-variable do not go
undetected.

* gnu/services.scm (cleanup-gexp): Introduce local 'fail-safe' macro and
use it.  Remove uses of 'false-if-exception'.
 2016-01-06 14:49:48 +01:00
Ludovic Courtès 341ae58213 gnu: ldc: Fix license. 
* gnu/packages/ldc.scm (ldc)[license]: Replace invalid use of
'license:x11-style' by LICENSE:BOOST1.0.
 2016-01-06 14:21:53 +01:00
Ricardo Wurmus a243e12aba gnu: icedtea7: Rename to icedtea-7. 
* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus d028740622 gnu: icedtea6: Rename to icedtea-6. 
* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus 5452588c1a gnu: icedtea6, icedtea7: Rename package to "icedtea". 
* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus d2540f80c2 gnu: Add and use default IcedTea. 
* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus d91488908b gnu: icedtea6, icedtea7: Unpack to "openjdk.src". 
* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
 2016-01-06 11:38:50 +01:00
Ricardo Wurmus 43c565d2e7 gnu: Add Jellyfish. 
* gnu/packages/bioinformatics.scm (jellyfish): New variable.
 2016-01-06 11:10:46 +01:00
Andreas Enge 7d1f8d4f52 gnu: calibre: Update to 2.48.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
 2016-01-05 22:46:54 +01:00
Roel Janssen a7ec569c98 gnu: Add LDC. 
* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
  (dist_patch_DATA): Add patch file.
 2016-01-05 16:24:57 +01:00
Dmitry Bogatov 1075b43737 gnu: Add emacs-undo-tree. 
* gnu/packages/emacs.scm (emacs-undo-tree): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-01-05 00:28:42 +01:00
Ludovic Courtès fe542b9762 gnu: emacs: Remove 'info.info'. 
* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'.  Add
'remove-info.info' phase.
 2016-01-05 00:28:42 +01:00
Ludovic Courtès fb74174958 linux-boot: Remove verbose output for module loads. 
* gnu/build/linux-boot.scm (boot-system): Leave
'current-module-debugging-port' unchanged.
* gnu/build/linux-modules.scm (load-linux-module*): Update comment about
'mmap'.
 2016-01-05 00:28:42 +01:00
Ludovic Courtès be7be9e8dd services: Move /tmp cleanup to a separate service. 
* gnu/services.scm (compute-boot-script): Remove /tmp and /var/run
deletion code from here.
(cleanup-gexp): New procedure with /tmp and /var/run deletion code
formerly in 'compute-boot-script'.
(cleanup-service-type): New variable.
* gnu/system.scm (essential-services): Add an instance of
CLEANUP-SERVICE-TYPE.
 2016-01-05 00:28:42 +01:00
Ludovic Courtès 94af9daa73 services: boot: Reinstate /tmp and /var/run deletion. 
For some time /tmp and /var/run were not being deleted because
'delete-file-recursively' was unbound.

* gnu/services.scm (compute-boot-script)[%modules, modules, compiled]:
New variables.  Use them to augment the module search path.
 2016-01-05 00:28:42 +01:00
Ricardo Wurmus 4828ff91ff gnu: gtk+: Add patch to support GUIX_GTK3_PATH. 
* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus 2a6afac905 gnu: gtk+-2: Add patch to support GUIX_GTK2_PATH. 
* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
 2016-01-04 16:11:10 -05:00
Ricardo Wurmus c2e87caaa6 gnu: julia: Update to 0.4.2. 
* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
 2016-01-04 11:35:57 +01:00
Ricardo Wurmus 50b40d0709 gnu: Add libuv-julia. 
* gnu/packages/julia.scm (libuv-julia): New variable.
 2016-01-04 11:35:57 +01:00
Ricardo Wurmus f1e3a8aed2 gnu: utf8proc: Update to 1.3.1. 
* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
 2016-01-04 11:35:57 +01:00
Leo Famulari 77553dff86 gnu: samba: Update to 4.3.3. 
Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.

* gnu/packages/samba.scm (samba): Update to 4.3.3.
 2016-01-03 14:59:49 -05:00
Leo Famulari f6cddbefcc gnu: ldb: Update to 1.1.24. 
Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.

* gnu/packages/samba.scm (ldb): Update to 1.2.24.
 2016-01-03 14:59:49 -05:00
Eric Bavier 209778717a gnu: Add Asymptote. 
* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-01-02 16:04:55 -06:00
Erik Edrosa b989390889 gnu: Add python-markdown. 
* gnu/packages/python.scm (python-markdown, python2-markdown): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-01-02 00:07:29 -05:00
宋文武 05d48c5243 gnu: love: Update to 0.10.0. 
* gnu/packages/game-development.scm (love): Update to 0.10.0.
 2016-01-02 10:31:53 +08:00
Ludovic Courtès 319007c507 gnu: guile-ssh: Update to 0.9.0. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.9.0.
 2016-01-01 22:59:20 +01:00
Ludovic Courtès f453f637d5 system: Allow the root file system to be named by UUID. 
* gnu/build/file-systems.scm (canonicalize-device-spec)[canonical-title]:
Use 'string->uuid' to check whether SPEC is a UUID.
When SPEC is a string and CANONICAL-TITLE is 'uuid, call 'string->uuid'.
* gnu/system.scm (operating-system-grub.cfg): Add 'root-device'
variable and use it for the "--root=" argument.
 2016-01-01 22:50:26 +01:00
Ludovic Courtès f8865db6a0 file-systems: Move 'string->uuid' to the build side. 
* gnu/system/file-systems.scm (%uuid-rx, string->uuid): Move to...
* gnu/build/file-systems.scm (%uuid-rx, string->uuid): ... here.  New
variables.
 2016-01-01 22:41:35 +01:00
Ludovic Courtès 29824d80ec system: Allow the root file system to have a UUID. 
This is a followup to ab64483.

* gnu/system.scm (mapped-device-user): Check whether the title of FS is
'device before calling 'string=?'.
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]:
Likewise.
 2016-01-01 22:34:13 +01:00
Fabian Harfert 45147b0caa gnu: Add xaos. 
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-12-31 11:29:43 +03:00
Leo Famulari 658212ebf7 gnu: Move cursynth to (gnu packages music). 
* gnu/packages/cursynth.scm: Remove.
* gnu/packages/music.scm (cursynth): New variable, from cursynth.scm.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove cursynth.scm.
 2015-12-30 21:26:05 -05:00
Leo Famulari 2ef8bbc3ae gnu: libcue: Update source URL. 
* gnu/packages/cdrom.scm (libcue)[source]: Update URL.
 2015-12-30 19:59:58 -05:00
Efraim Flashner 34da7af4c1 gnu: python-mox3: Update to 0.13.0. 
* gnu/packages/openstack.scm (python-mox3): Update to 0.13.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 13fcc6df37 gnu: python-fixtures: Update to 1.4.0. 
* gnu/packages/python.scm (python-fixtures): Update to 1.4.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner af1ab77312 gnu: python-pyld: Update to 0.6.8. 
* gnu/packages/python.scm (python-pyld): Update to 0.6.8.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 1780424035 gnu: python-virtualenv: Update to 13.1.2. 
* gnu/packages/python.scm (python-virtualenv): Update to 13.1.2.
[arguments]: Custom test command.
[inputs]: Remove python-nose, add python-pytest.
 2015-12-30 23:16:09 +02:00
Efraim Flashner ec89a25cad gnu: python-oslosphinx: Update to 4.2.0. 
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.2.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner f66bb273de gnu: python-oslo.serialization: Update to 2.2.0. 
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.2.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 4768988887 gnu: python-os-testr: Update to 0.5.0. 
* gnu/packages/openstack.scm (python-os-testr): Update to 0.5.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 45f4c28d80 gnu: python-stevedore: Update to 1.10.0. 
* gnu/packages/openstack.scm (python-stevedore): Update to 1.10.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 622d21bba9 gnu: python-tempest-lib: Update to 0.12.0. 
* gnu/packages/openstack.scm (python-tempest-lib): Update to 0.12.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 690e8c6637 gnu: python-passlib: Update to 1.6.5. 
* gnu/packages/python.scm (python-passlib): Update to 1.6.5.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 03fd001cef gnu: python-libarchive-c: Update to 2.2. 
* gnu/packages/python.scm (python-libarchive-c): Update to 2.2.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 99b00dc796 gnu: python-tlsh: Update to 3.4.4. 
* gnu/packages/python.scm (python-tlsh): Update to 3.4.4.
 2015-12-30 23:16:09 +02:00
Efraim Flashner b8834c219e gnu: python-webob: Update to 1.5.1. 
* gnu/packages/python.scm (python-webob): Update to 1.5.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 1b99553317 gnu: python-flake8: Update to 2.5.1. 
* gnu/packages/python.scm (python-flake8): Update to 2.5.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 2abc397225 gnu: python-pyflakes: Update to 1.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 1.0.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 3655ee76a6 gnu: python-pyzmq: Update to 15.1.0. 
* gnu/packages/python.scm (python-pyzmq): Update to 15.1.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner f56777be0a gnu: python-psutil: Update to 3.3.0. 
* gnu/packages/python.scm (python-psutil): Update to 3.3.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 38eb6919e1 gnu: python-pycparser: Update to 2.14. 
* gnu/packages/python.scm (python-pycparser): Update to 2.14.
 2015-12-30 23:16:09 +02:00
Efraim Flashner d9aa097b96 gnu: python-pyrfc3339: Update to 1.0. 
* gnu/packages/python.scm (python-pyrfc3339): Update to 1.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner f7cb984133 gnu: python-nose: Update to 1.3.7. 
* gnu/packages/python.scm (python-nose): Update to 1.3.7.
 2015-12-30 23:16:09 +02:00
Efraim Flashner ec3bcbc7e4 gnu: python-rpy2: Update to 2.7.6. 
* gnu/packages/python.scm (python-rpy2): Update to 2.7.6.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 11f97c27bc gnu: pelican: Update to 3.6.3. 
* gnu/packages/python.scm (pelican): Update to 3.6.3.
 2015-12-30 23:16:09 +02:00
Efraim Flashner e98149b3a4 gnu: python-jinja2: Update to 2.8. 
* gnu/packages/python.scm (python-jinja2): Update to 2.8.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 8925d4f345 gnu: python-unidecode: Update to 0.04.18. 
* gnu/packages/python.scm (python-unidecode): Update to 0.04.18.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 7fb9ff4dea gnu: python-blinker: Update to 1.4. 
* gnu/packages/python.scm (python-blinker): Update to 1.4.
 2015-12-30 23:16:09 +02:00
Efraim Flashner c2a9c1c0bc gnu: python-dateutil: Update to 2.4.2. 
* gnu/packages/python.scm (python-dateutil): Update to 2.4.2.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 2c3d13fe1b gnu: isync: Update to 1.2.1. 
* gnu/packages/mail.scm (isync): Update to 1.2.1.
 2015-12-30 23:16:09 +02:00
Efraim Flashner aadf46253a gnu: getmail: Update to 4.48.0. 
* gnu/packages/mail.scm (getmail): Update to 4.48.0.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 866fade9e5 gnu: notmuch: Update to 0.21. 
* gnu/packages/mail.scm (notmuch): Update to 0.21.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 70e9d258c4 gnu: youtube-dl: Update to 2015.12.29. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.12.29.
 2015-12-30 23:16:09 +02:00
Efraim Flashner 31e98ca63f gnu: offlineimap: Update to 6.6.1. 
* gnu/packages/mail.scm (offlineimap): Update to 6.6.1.
 2015-12-30 23:16:09 +02:00
Ricardo Wurmus 3d5fd24090 gnu: Add Fritzing. 
* gnu/packages/engineering.scm (fritzing): New variable.
 2015-12-30 20:41:33 +01:00
Ludovic Courtès 0084aaf3d4 gnu: Add lcov. 
* gnu/packages/code.scm (lcov): New variable.
 2015-12-30 19:14:04 +01:00
Alex Vong 0c1910ed03 gnu: ladspa: Update URLs. 
* gnu/packages/audio.scm (ladspa): Update source and home page url.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-12-30 18:18:38 +01:00
Andreas Enge f95dad899b gnu: texlive: Patch texmfcnf.lua. 
* gnu/packages/texlive.scm (texlive): Patch texmfcnf.lua to point to the
  absolute texlive-texmf tree.
 2015-12-30 11:24:26 +01:00
Mark H Weaver 826244f01a gnu: fuse: Fix source URI. 
This is a followup to commit b7e7d1b9d3.

* gnu/packages/linux.scm (fuse)[source]: Fix source URI.
 2015-12-29 22:25:02 -05:00
Ben Woodcroft 19f4554c94 gnu: Add fraggenescan. 
* gnu/packages/bioinformatics.scm (fraggenescan): New variable.
 2015-12-29 20:14:03 -05:00
Leo Famulari 6819a8ddd6 gnu: Add shntool. 
* gnu/packages/audio.scm (shntool): New variable.
 2015-12-29 19:55:21 -05:00
Leo Famulari 6da16993eb gnu: Add cuetools. 
* gnu/packages/audio.scm (cuetools): New variable.
 2015-12-29 19:55:21 -05:00
Efraim Flashner 11afbbc651 gnu: enlightenment: Update to 0.20.2. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.2.
 2015-12-29 22:52:20 +02:00
Leo Famulari 6959a13271 gnu: sshfs-fuse: Update source URL. 
* gnu/packages/linux.scm (sshfs-fuse)[source]: Update URL.
 2015-12-29 14:20:55 -05:00
Leo Famulari b7e7d1b9d3 gnu: fuse: Update to 2.9.4. 
* gnu/packages/patches/fuse-CVE-2015-3202.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (fuse): Update to 2.9.4.
  [source]: Remove patch.
 2015-12-29 14:20:55 -05:00
Efraim Flashner c7d0bf0071 gnu: youtube-dl: Update to 2015.12.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.12.23.
 2015-12-29 09:33:10 +02:00
Ricardo Wurmus 6da2e99e2e gnu: tuxguitar: Set missing GCJFLAGS. 
* gnu/packages/music.scm (tuxguitar)[arguments]: Set compiler flags
  "-fsource=1.4" and "-fPIC".
 2015-12-29 07:52:19 +01:00
Ricardo Wurmus 5f1c949866 gnu: tuxguitar: Use "modify-phases" syntax. 
* gnu/packages/music.scm (tuxguitar)[arguments]: Use "modify-phases"
  syntax.
 2015-12-29 07:52:19 +01:00
Leo Famulari c1ff0f2fed gnu: irssi: Update source URL. 
* gnu/packages/irssi.scm (irssi)[source]: Update URL.
 2015-12-27 17:39:03 -05:00
Efraim Flashner 85d42329b3 gnu: elementary: Update to 1.16.1. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.16.1.
 2015-12-27 15:33:20 +02:00
Efraim Flashner c1a064c96e gnu: efl: Update to 1.16.1. 
* gnu/packages/enlightenment.scm (efl): Update to 1.16.1.
 2015-12-27 14:44:29 +02:00
Efraim Flashner e21338bec5 gnu: python-decorator: Update to 4.0.6. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.6.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 2a2d098195 gnu: python-exif-read: Update to 2.1.2. 
* gnu/packages/python.scm (python-exif-read): Update to 2.1.2.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 82a3c582a3 gnu: python-coverage: Update to 4.0.3. 
* gnu/packages/python.scm (python-coverage): Update to 4.0.3.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 9f44228512 gnu: python-pygments: Update to 2.0.2. 
* gnu/packages/python.scm (python-pygments): Update to 2.0.2.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 2d3a437c79 gnu: python-cffi: Update to 1.4.2. 
* gnu/packages/python.scm (python-cffi): Update to 1.4.2.
 2015-12-26 23:10:53 +02:00
Efraim Flashner 71c8a804b9 gnu: python-py: Update to 1.4.31. 
* gnu/packages/python.scm (python-py): Update to 1.4.31.
 2015-12-26 23:10:53 +02:00