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2021 Commits

Author SHA1 Message Date
Kei Kebreau 7d01ee66d4
gnu: Add avogadro. 
* gnu/packages/chemistry.scm (avogadro): New variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2018-08-25 17:05:30 -04:00
Leo Famulari 36a8d5cdf4
gnu: OpenSSH: Update to 7.8p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.8p1.
[source]: Remove 'openssh-CVE-2018-15473.patch'.
* gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-24 17:04:58 -04:00
Tobias Geerinckx-Rice 9e29921162
gnu: byobu: Update to 5.127. 
* gnu/packages/screen.scm (byobu): Update to 5.127.
* gnu/packages/patches/byobu-writable-status.patch: Adjust context
accordingly.
 2018-08-23 17:16:41 +02:00
Leo Famulari 58927996d9
gnu: perl-dbd-mysql: Update to 4.046. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-22 15:40:08 -04:00
Leo Famulari 373a9fd4db
gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}. 
* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch,
gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (soundtouch)[source]: Use them.
 2018-08-22 13:38:39 -04:00
Leo Famulari 6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473]. 
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
 2018-08-21 11:16:30 -04:00
Ludovic Courtès 0b93d04ac5
gnu: gcc@4.8: Fix libsanitizer build issue. 
Fixes <https://bugs.gnu.org/32397>.
Reported by fis trivial <ybbs.daans@hotmail.com>.

* gnu/packages/patches/gcc-4.8-libsanitizer-fix.patch: New file.
* gnu/packages/gcc.scm (gcc-4.8)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-08-19 18:21:24 +02:00
Marius Bakke a7bc1588e6
Merge branch 'staging' 2018-08-19 15:24:59 +02:00
Tobias Geerinckx-Rice 8cd80a4b61
gnu: eigen: Update to 3.3.5. 
* gnu/packages/algebra.scm (eigen): Update to 3.3.5.
[source]: Remove upstreamed ARM patch and obsolete substitutions.
* gnu/packages/patches/eigen-arm-neon-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-18 16:40:31 +02:00
Kei Kebreau b66741edc9
gnu: octave: Update to 4.4.1. 
* gnu/packages/maths.scm (octave): Update to 4.4.1.
(qtoctave)[source]: Remove obsolete patch.
* gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-17 10:47:52 -04:00
Tobias Geerinckx-Rice c4f8953a12
gnu: lxc: Update to 3.0.2. 
* gnu/packages/virtualization.scm (lxc): Update to 3.0.2.
[source]: Remove patch.
* gnu/packages/patches/lxc-CVE-2018-6556.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-17 05:19:05 +02:00
Konrad Hinsen e0b49c785b
gnu: racket: Update to 7.0. 
* gnu/packages/scheme.scm (racket): Update to 7.0.
[inputs]: Add libedit.
[arguments]: Update the list of FFI library references to patch.
[source]: Remove 'racket-fix-xform-issue.patch'.
* gnu/packages/patches/racket-store-checksum-override.patch: Adjust.
* gnu/packages/patches/racket-fix-xform-issue.patch: Delete file.
* gnu/local.mk: Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-16 18:36:09 -04:00
Tobias Geerinckx-Rice 1dfb14d2f7
gnu: btrfs-progs: Update to 4.17.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.17.1.
[source]: Remove patch.
[native-inputs]: Add python.
* gnu/packages/patches/btrfs-progs-e-value-block.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-16 22:21:53 +02:00
Tobias Geerinckx-Rice 76c888cb94
gnu: e2fsprogs: Update to 1.44.3. 
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.3.
[source]: Remove glibc-2.27 patch.
(extundelete)[source]: Apply e2fsprogs-1.44 patch.
* gnu/packages/patches/e2fsprogs-glibc-2.27.patch: Delete file...
* gnu/local.mk (dist_patch_DATA): ...remove it, and add...
* gnu/packages/patches/extundelete-e2fsprogs-1.44.patch: ...this new
file.
 2018-08-16 22:21:53 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Tobias Geerinckx-Rice 5dc8437fc0
gnu: qemu: Update to 3.0.0 [mitigate CVE-2018-3639]. 
* gnu/packages/virtualization.scm (qemu): Update to 3.0.0.
[source]: Remove patch.
* gnu/packages/patches/qemu-CVE-2018-11806.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-16 02:41:42 +02:00
Pierre Langlois 7bcc34050b
gnu: clementine: Fix creating initial database. 
It seems a recent version of sqlite broke Clementine's first startup. It turns
out we can patch clementine to fix the problem instead of providing a different
sqlite package:
<https://github.com/clementine-player/Clementine/pull/5669>

* gnu/packages/databases.scm (sqlite-with-fts3): Remove.
* gnu/packages/music.scm (clementine)[inputs]: Replace sqlite-with-fts3 with
sqlite.
[source]: Add clementine-fix-sqlite.patch.
* gnu/packages/patches/clementine-fix-sqlite.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-15 14:29:56 -04:00
Tobias Geerinckx-Rice d87e547702
gnu: openssl@1.1: Update to 1.1.0i [fix CVE-2018-0737]. 
Also includes a fix for CVE-2018-0732, and a different approach to
fixing CVE-2018-0495.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0i.
[sources]: Remove CVE patches.
* gnu/packages/patches/openssl-1.1.0-CVE-2018-0495.patch: Delete...
* gnu/packages/patches/openssl-1.1.0-CVE-2018-0732.patch: ...both files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-08-15 00:35:53 +02:00
Leo Famulari feccc81013
gnu: gdm: Fix CVE-2018-14424. 
* gnu/packages/patches/gdm-CVE-2018-14424.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gdm): Use it.
 2018-08-14 16:52:48 -04:00
Tobias Geerinckx-Rice b92302fd6c
gnu: translate-shell: Update to 0.9.6.8. 
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.8.
[source]: Remove patch.
* gnu/packages/patches/translate-shell-fix-curl-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-14 15:54:29 +02:00
Björn Höfling 18e56ad7eb
gnu: aegisub: Fix build. 
* gnu/packages/patches/aegisub-icu59-include-unistr.patch: New file.
* gnu/lokal.mk (dist_patch_DATA): Register it.
* gnu/packages/video.scm (aegisub)[source]: Use patch.
[arguments]: Add CXXFLAGS, Return #t from fix-ldflags phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-13 11:43:04 -04:00
Timothy Sample e3fc9bcce2
gnu: racket: Ignore bytecode checksums in the store. 
Fixes <https://debbugs.gnu.org/30680>.

* gnu/packages/patches/racket-store-checksum-override.patch: New file.
* gnu/packages/scheme.scm (racket)[sources]: Add it.
 2018-08-12 20:20:36 -04:00
Marius Bakke 7b38f045c0
Merge branch 'master' into staging 2018-08-10 15:32:51 +02:00
Leo Famulari 4e23e8d809
gnu: wpa_supplicant: Fix CVE-2018-14526. 
* gnu/packages/patches/wpa-supplicant-CVE-2018-14526.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Use it.
 2018-08-09 18:18:03 -04:00
Ricardo Wurmus bcdee2dc33
gnu: polkit: Update to 0.115 [fixes CVE-2018-1116]. 
* gnu/packages/polkit.scm (polkit): Update to 0.115.
[origin]: Adjust snippet.
[inputs]: Replace mozjs with mozjs-52.
* gnu/packages/patches/polkit-drop-test.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.

(cherry picked from commit 50afd712312a4b9fa42d7f9d03464e542b3aeb75)
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-08-09 21:19:47 +02:00
Marius Bakke 88c54b1b75
gnu: xorg-server: Update to 1.20.1. 
* gnu/packages/patches/xorg-server-rotate-fb.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.1.
[source](patches): Remove 'xorg-server-rotate-fb.patch'.
 2018-08-09 21:19:47 +02:00
Leo Famulari b5b610af5d
gnu: lxc: Fix CVE-2018-6556. 
* gnu/packages/patches/lxc-CVE-2018-6556.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (lxc)[source]: Use it.
 2018-08-08 11:51:54 -04:00
Marius Bakke 3418e43bf5
gnu: mariadb: Adjust to test failures on Hydra. 
* gnu/packages/patches/mariadb-client-test-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/databases.scm (mariadb)[source](patches): Add it.
[arguments]: Increase retry count and test timeout.  Disable test
main.myisampack.
 2018-08-07 00:51:48 +02:00
Marius Bakke 6af7c2b178
Merge branch 'master' into staging 2018-08-07 00:50:25 +02:00
Arun Isaac fa0a6d93d8
gnu: emacs-exwm: Fix fullscreen issue. 
* gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/emacs.scm (emacs-exwm)[sources]: Add
emacs-exwm-fix-fullscreen-issue.patch to patches.
 2018-08-03 18:21:19 +05:30
Efraim Flashner 7b8a753672
gnu: irrlicht: Don't use bundled libraries. 
* gnu/packages/patches/irrlicht-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/games.scm (irrlicht)[source]: Add patch. Remove bundled
code and binaries in a snippet.
[native-inputs]: Remove unzip.
[inputs]: Remove glu, add bzip2, libjpeg, libpng, libx11, libxx86vm.
[arguments]: Remove custom 'unpack phase, add custom 'chdir-to-source
phase and adjust 'fix-build-env phase to changes.
 2018-08-02 12:19:42 +03:00
Marius Bakke ad430c7127
gnu: xdotool: Update to 3.20160805.1. 
* gnu/packages/xdisorg.scm (xdotool): Update to 3.20160805.1.
[source](patches): Remove.
[arguments]: Create output directory.
* gnu/packages/patches/xdotool-fix-makefile.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-01 13:32:11 +02:00
Marius Bakke 0d206dd054
gnu: lvm2: Fix static linking of dmeventd. 
Fixes a regression introduced in a3ed69b694
where dmeventd.static fails to link against libm and breaks "lvm2-static".

* gnu/packages/patches/lvm2-static-link.patch: Patch make.tmpl.in.
 2018-07-31 22:18:51 +02:00
Andreas Enge 601cb1be2b
gnu: qtwebkit: Update to 5.212.0-alpha2. 
* gnu/packages/patches/qtwebkit-pbutils-include.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/qt.scm (qtwebkit): Update to 5.212.0-alpha2.
[source]: Use new upstream location. Add patch.
[build-system]: Switch to cmake-build-system.
[inputs]: Add glib, gst-plugins-base, qtlocation, qtsensors,
qtwebchannel.
[arguments]: Disable the tests. Add new configure flags. Remove all
custom phases.
 2018-07-31 17:45:58 +03:00
Marius Bakke 869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Marius Bakke 1743172cdb
gnu: libreoffice: Fix build with newer GLM. 
* gnu/packages/patches/libreoffice-glm.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add it.
 2018-07-29 21:31:55 +02:00
Ben Woodcroft 9e0c135c39
gnu: python-dendropy: Update to 4.4.0. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy):
Update to 4.4.0.
[source]: Use GitHub URI. Remove patch.
[properties]: Remove field.
(python2-dendropy)[arguments]: Run tests with setup.py.
[native-inputs]: Remove 'python2-nose.
* gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete it.
 2018-07-29 22:53:10 +10:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Ludovic Courtès c95c9032b4
gnu: x265: Fix compilation on ARMv7. 
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file.
* gnu/packages/video.scm (x265)[sources](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-07-28 15:08:07 +02:00
Ludovic Courtès 5193ae64ca
gnu: mariadb: Work around GCC ICE on armhf-linux. 
* gnu/packages/patches/mariadb-gcc-ice.patch: New file.
* gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add
'apply-patch' phase.
[native-inputs]: Conditionally add "gcc-ice-patch" input.
 2018-07-28 15:08:07 +02:00
Marius Bakke cb8f7d6d2f
gnu: meson: Update to 0.47.1. 
* gnu/packages/build-tools.scm (meson): Update to 0.47.1.
* gnu/packages/patches/meson-for-build-rpath.patch: Adjust to file rename and
indendation change.
 2018-07-28 14:54:18 +02:00
Efraim Flashner 95da608451
Merge remote-tracking branch 'origin/master' into qt-updates 2018-07-25 21:30:18 +03:00
Efraim Flashner f88c8624cc
Revert "gnu: quassel: Fix building with Qt 5.11." 
This reverts commit 68ddfb2e8d.

This is no longer necessary after the update to Qt-5.11.1.
 2018-07-25 15:18:27 +03:00
Leo Famulari 39a57afc42
gnu: syncthing: Update to 0.14.49. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.49.
[source]: Remove obsolete patch.
[inputs]: Remove go-github-com-kardianos-osext.
* gnu/packages/patches/syncthing-fix-crash.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-07-24 19:07:06 -04:00
Efraim Flashner 02062f42e6
Revert "gnu: sddm: Fix CMake build." 
This reverts commit 8674abb1dd.

This is no longer necessary after the upgrade to Qt-5.11.1.
 2018-07-24 22:38:25 +03:00
Ludovic Courtès 68f50cfdd3
gnu: xorg-server: Apply patch to fix screen rotation on KMS. 
Fixes <https://bugs.freedesktop.org/show_bug.cgi?id=106715>.

* gnu/packages/patches/xorg-server-rotate-fb.patch: New file.
* gnu/packages/xorg.scm (xorg-server)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-07-24 15:48:06 +02:00
Efraim Flashner 2338755afa
gnu: python-pyqt: Don't use private sip file. 
* gnu/packages/qt.scm (python-sip)[arguments]: Don't use '--sip-module'
flag in custom 'configure phase.
(python-pyqt)[sources]: Add patch.
* gnu/packages/patches/pyqt-public-sip.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-07-22 20:43:01 +03:00
Stefan Stefanović 706a6ff154
gnu: sddm: Update to 0.18.0. 
* gnu/packages/display-managers.scm (sddm): Update to 0.18.0.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-07-22 16:25:59 +02:00
Kei Kebreau eb5ece73a8
gnu: openbabel: Fix crash when opening NWChem output files. 
* gnu/packages/patches/openbabel-fix-crash-on-nwchem-output.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/chemistry.scm (openbabel)[source]: Use it.
 2018-07-21 22:28:51 -04:00
Leo Famulari a1e3da63cb
gnu: ghostscript: Fix CVE-2018-10194. 
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-07-17 20:44:52 -04:00