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Author SHA1 Message Date
Ricardo Wurmus 993a4fbb7c
Merge remote-tracking branch 'origin/master' into wip-texlive 2019-09-18 11:54:54 +02:00
Ricardo Wurmus a870b80046
gnu: festival: Fix scripts. 
* gnu/packages/speech.scm (festival)[arguments]: Fix broken shebangs in
scripts.
 2019-09-18 10:57:12 +02:00
Ricardo Wurmus dfcf79ac59
gnu: festival: Include default voice. 
* gnu/packages/speech.scm (festival)[arguments]: Install default voice.
[native-inputs]: Add default voice.
 2019-09-18 10:19:16 +02:00
Björn Höfling f8ddfb505a
gnu: emacs-base16-theme: Update to 2.2. 
* gnu/packages/emacs-xyz.scm (emacs-base16-theme): Update to 2.2.
[source]: Use github instead of melpa.
 2019-09-17 23:35:03 +02:00
Björn Höfling 7026ecc122
gnu: emacs-olivetti: Update to 1.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-olivetti)[version]: Update to 1.8.0.
[source]: Use github instead of melpa.
 2019-09-17 23:12:01 +02:00
Björn Höfling 3a8d68bada
gnu: emacs-elixir-mode: Use git-fetch. 
Fixes a source instability reported by Josh Holland
in <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=37437>

* gnu/packages/emacs-xyz.scm (emacs-elixir-mode)[source]:
Use GIT-FETCH & GIT-FILE-NAME.
 2019-09-17 22:23:42 +02:00
Ricardo Wurmus 17bbd30d87
gnu: festival: Install missing info files. 
Reported by reepca on the #guix IRC channel.

This is a follow-up to commit 34583ec6e3.

* gnu/packages/speech.scm (festival)[arguments]: Install missing info files.
 2019-09-17 19:04:05 +02:00
Efraim Flashner 7009d20ad3
gnu: Add rust-futures-sink-preview. 
* gnu/packages/crates-io.scm (rust-futures-sink-preview): New variable.
 2019-09-17 19:40:10 +03:00
Efraim Flashner 03e22b2eee
gnu: Add rust-futures-core-preview. 
* gnu/packages/crates-io.scm (rust-futures-core-preview): New variable.
 2019-09-17 19:40:10 +03:00
Efraim Flashner 0cb01bb99d
gnu: Add rust-unreachable. 
* gnu/packages/crates-io.scm (rust-unreachable): New variable.
 2019-09-17 19:40:09 +03:00
Efraim Flashner 241bc53ead
gnu: Add rust-libgit2-sys-0.7. 
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.7): New variable.
 2019-09-17 19:40:09 +03:00
Efraim Flashner 4bf8cd217a
gnu: Add rust-libgit2-sys. 
* gnu/packages/crates-io.scm (rust-libgit2-sys): New variable.
 2019-09-17 19:40:09 +03:00
Efraim Flashner b81e1ea589
gnu: Add rust-libssh2-sys. 
* gnu/packages/crates-io.scm (rust-libssh2-sys): New variable.
 2019-09-17 19:40:09 +03:00
Efraim Flashner e416c93008
gnu: Add rust-curl-sys. 
* gnu/packages/crates-io.scm (rust-curl-sys): New variable.
 2019-09-17 19:40:09 +03:00
Efraim Flashner 956e4aedea
gnu: Add rust-openssl-sys. 
* gnu/packages/crates-io.scm (rust-openssl-sys): New variable.
 2019-09-17 19:40:08 +03:00
Efraim Flashner 5e9fdf9189
gnu: Add rust-openssl-src. 
* gnu/packages/crates-io.scm (rust-openssl-src): New variable.
 2019-09-17 19:40:08 +03:00
Efraim Flashner a7debf9d7f
gnu: Add rust-dirs. 
* gnu/packages/crates-io.scm (rust-dirs): New variable.
 2019-09-17 19:40:08 +03:00
Efraim Flashner ef05c6df02
gnu: Add rust-backtrace-sys. 
* gnu/packages/crates-io.scm (rust-backtrace-sys): New variable.
 2019-09-17 19:40:08 +03:00
Efraim Flashner fc4d385aba
gnu: Add rust-libz-sys. 
* gnu/packages/crates-io.scm (rust-libz-sys): New variable.
 2019-09-17 19:40:08 +03:00
Efraim Flashner 61b10dd1bf
gnu: Add rust-libnghttp2-sys. 
* gnu/packages/crates-io.scm (rust-libnghttp2-sys): New variable.
 2019-09-17 19:40:08 +03:00
Efraim Flashner d7bec7535f
gnu: Add rust-lock-api. 
* gnu/packages/crates-io.scm (rust-lock-api): New variable.
 2019-09-17 19:40:07 +03:00
Efraim Flashner c5d250d5dc
gnu: Add rust-itoa-0.1. 
* gnu/packages/crates-io.scm (rust-itoa-0.1): New variable.
 2019-09-17 19:40:07 +03:00
Efraim Flashner 17b977ab54
gnu: Add rust-dtoa-0.2. 
* gnu/packages/crates-io.scm (rust-dtoa-0.2): New variable.
 2019-09-17 19:40:07 +03:00
Efraim Flashner 7617f231c0
gnu: Add rust-num-traits-0.1. 
* gnu/packages/crates-io.scm (rust-num-traits-0.1): New variable.
 2019-09-17 19:40:07 +03:00
Efraim Flashner 14f3a7e373
gnu: Add rust-clang-sys-0.26. 
* gnu/packages/crates-io.scm (rust-clang-sys-0.26): New variable.
 2019-09-17 19:40:07 +03:00
Efraim Flashner 56b695196f
gnu: Add rust-term. 
* gnu/packages/crates-io.scm (rust-term): New variable.
 2019-09-17 19:40:07 +03:00
Efraim Flashner c800a30744
gnu: Add rust-strsim-0.8. 
* gnu/packages/crates-io.scm (rust-strsim-0.8): New variable.
 2019-09-17 19:40:06 +03:00
Efraim Flashner 86d452f946
gnu: Add rust-static-assertions. 
* gnu/packages/crates-io.scm (rust-static-assertions): New variable.
 2019-09-17 19:40:06 +03:00
Efraim Flashner de13223a11
gnu: Add rust-rustc-hash. 
* gnu/packages/crates-io.scm (rust-rustc-hash): New variable.
 2019-09-17 19:40:06 +03:00
Efraim Flashner 80e4e9dda6
gnu: Add rust-percent-encoding-1. 
* gnu/packages/crates-io.scm (rust-percent-encoding-1): New variable.
 2019-09-17 19:40:06 +03:00
Ricardo Wurmus 34583ec6e3
gnu: Add festival. 
* gnu/packages/speech.scm (festival): New variable.
 2019-09-17 17:16:43 +02:00
Tobias Geerinckx-Rice 777db6b845
gnu: unbound: Update to 1.9.3. 
* gnu/packages/dns.scm (unbound): Update to 1.9.3.
 2019-09-17 16:04:44 +02:00
Tobias Geerinckx-Rice 530680dfaf
gnu: ncmpc: Update to 0.35. 
* gnu/packages/mpd.scm (ncmpc): Update to 0.35.
 2019-09-17 16:04:43 +02:00
Tobias Geerinckx-Rice cadf846bea
gnu: elixir: Don't use unstable tarball. 
* gnu/packages/elixir.scm (elixir)[source]: Use GIT-FETCH & GIT-FILE-NAME.
[arguments]: Add ‘make-git-checkout-writable’ phase.
 2019-09-17 16:04:43 +02:00
Tobias Geerinckx-Rice 9e8b549fe6
gnu: perl-clone: Update to 0.43. 
* gnu/packages/perl.scm (perl-clone): Update to 0.43.
 2019-09-17 16:04:43 +02:00
Tobias Geerinckx-Rice e905c8d654
gnu: fuse: Update to 2.9.9. 
* gnu/packages/linux.scm (fuse): Update to 2.9.9.
 2019-09-17 16:04:43 +02:00
Efraim Flashner ff1d80f304
gnu: youtube-dl: Update source uri. 
* gnu/packages/video.scm (youtube-dl)[source]: Update to new upstream uri.
 2019-09-17 14:00:40 +03:00
Ludovic Courtès 9e8e252026
gnu: guix: Update to 1h2qlbb. 
Fixes <https://bugs.gnu.org/37426>.
Reported by Mikhail Kryshen <mikhail@kryshen.net>.

* gnu/packages/package-management.scm (guix): Update to 1h2qlbb.
 2019-09-17 10:14:27 +02:00
Alex Vong 0ed97e6980
gnu: Add tegaki-wagomu-traditional-chinese. 
* gnu/packages/language.scm (tegaki-wagomu-traditional-chinese): New
variable.
 2019-09-17 13:31:25 +08:00
Alex Vong 708c6857c1
gnu: Add tegaki-wagomu-simplified-chinese. 
* gnu/packages/language.scm (tegaki-wagomu-simplified-chinese): New variable.
 2019-09-17 13:31:05 +08:00
Alex Vong 7c25904c98
gnu: Add tegaki-wagomu-japanese-joyo. 
* gnu/packages/language.scm (tegaki-wagomu-japanese-joyo): New variable.
 2019-09-17 13:31:00 +08:00
Alex Vong ee3dc52b3f
gnu: Add tegaki-wagomu-japanese-kyoiku. 
* gnu/packages/language.scm (tegaki-wagomu-japanese-kyoiku): New variable.
 2019-09-17 13:30:54 +08:00
Alex Vong 6b32e91a4c
gnu: Add tegaki-wagomu-japanese. 
* gnu/packages/language.scm (tegaki-wagomu-japanese): New variable.
 2019-09-17 13:30:48 +08:00
Alex Vong caee9806ac
gnu: Add tegaki-zinnia-traditional-chinese-light. 
* gnu/packages/language.scm (tegaki-zinnia-traditional-chinese-light): New
variable.
 2019-09-17 13:30:42 +08:00
Alex Vong 0bfcc29ddf
gnu: Add tegaki-zinnia-traditional-chinese. 
* gnu/packages/language.scm (tegaki-zinnia-traditional-chinese): New
variable.
 2019-09-17 13:30:36 +08:00
Alex Vong ca1f28bd35
gnu: Add tegaki-zinnia-simplified-chinese-light. 
* gnu/packages/language.scm (tegaki-zinnia-simplified-chinese-light): New
variable.
 2019-09-17 13:30:29 +08:00
Alex Vong e067946450
gnu: Add tegaki-zinnia-simplified-chinese. 
* gnu/packages/language.scm (tegaki-zinnia-simplified-chinese): New variable.
 2019-09-17 13:30:24 +08:00
Alex Vong 8955412be1
gnu: Add tegaki-zinnia-japanese-joyo. 
* gnu/packages/language.scm (tegaki-zinnia-japanese-joyo): New variable.
 2019-09-17 13:30:18 +08:00
Alex Vong 5fd5674872
gnu: Add tegaki-zinnia-japanese-kyoiku. 
* gnu/packages/language.scm (tegaki-zinnia-japanese-kyoiku): New variable.
 2019-09-17 13:30:11 +08:00
Alex Vong c8bbd80885
gnu: Add tegaki-zinnia-japanese-light. 
* gnu/packages/language.scm (tegaki-zinnia-japanese-light): New variable.
 2019-09-17 13:29:53 +08:00
Alex Vong 3ed30b88c3
gnu: Add tegaki-zinnia-japanese. 
* gnu/packages/language.scm (tegaki-zinnia-japanese): New variable.
 2019-09-17 13:29:43 +08:00
Alex Vong e4f72a584b
gnu: Add python2-tegaki-recognize. 
* gnu/packages/language.scm (python2-tegaki-recognize): New variable.
 2019-09-17 13:29:37 +08:00
Alex Vong dd97a9c4da
gnu: Add python2-tegaki-tools. 
* gnu/packages/language.scm (python2-tegaki-tools): New variable.
 2019-09-17 13:29:31 +08:00
Alex Vong 58ac928925
gnu: Add python2-tegaki-pygtk. 
* gnu/packages/language.scm (python2-tegaki-pygtk): New variable.
 2019-09-17 13:29:25 +08:00
Alex Vong c281052310
gnu: Add python2-tegaki-python. 
* gnu/packages/language.scm (python2-tegaki-python): New variable.
 2019-09-17 13:29:18 +08:00
Alex Vong 410387ad05
gnu: Add python2-tegaki-wagomu. 
* gnu/packages/language.scm
(python2-tegaki-wagomu, remove-pre-compiled-files-modules): New variables.
(remove-pre-compiled-files, tegaki-release-uri): New procedures.
 2019-09-17 13:29:12 +08:00
Alex Vong 16dd1fd044
gnu: Add python2-zinnia. 
* gnu/packages/ocr.scm (python2-zinnia): New variable.
 2019-09-17 13:29:03 +08:00
Alex Vong 9a94ccec4c
gnu: Add zinnia. 
* gnu/packages/ocr.scm (zinnia): New variable.
 2019-09-17 13:28:52 +08:00
Tobias Geerinckx-Rice 015fc03611
gnu: libgtop: Update to 2.40.0. 
* gnu/packages/gnome.scm (libgtop): Update to 2.40.0.
 2019-09-16 23:31:08 +02:00
Tobias Geerinckx-Rice 59487fc29a
gnu: libgtop: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (libgtop)[source]: Hard-code NAME.
 2019-09-16 23:31:07 +02:00
Efraim Flashner c34671a69d
gnu: rust-percent-encoding: Update to 2.1.0. 
* gnu/packages/crates-io.scm (rust-percent-encoding): Update to 2.1.0.
 2019-09-16 16:18:39 +03:00
Efraim Flashner 230e59da1b
gnu: education.scm: Import (gnu packages curl). 
This is a follow-up to 3f19b268ea.

* gnu/packages/education.scm.scm: Import (gnu packages curl) module.
 2019-09-16 16:16:18 +03:00
Rutger Helling 489f540b4e
gnu: linux-libre: Update to 5.2.15. 
* gnu/packages/linux.scm (linux-libre): Update to 5.2.15.
 2019-09-16 14:07:37 +02:00
Rutger Helling 30ba3d8593
gnu: wireguard: Update to 0.0.20190913. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190913.
 2019-09-16 14:07:37 +02:00
Efraim Flashner d2c0a7a22f
gnu: Add ktouch. 
* gnu/packages/education.scm (ktouch): New variable.
 2019-09-16 15:04:30 +03:00
Efraim Flashner dece34332b
gnu: Add kqtquickcharts. 
* gnu/packages/kde.scm (kqtquickcharts): New variable.
 2019-09-16 15:04:26 +03:00
Efraim Flashner 3f19b268ea
gnu: Add klavaro. 
* gnu/packages/education.scm (klavaro): New variable.
 2019-09-16 15:01:03 +03:00
Ricardo Wurmus 518fd3b659
gnu: neovim: Update to 0.4.2. 
* gnu/packages/vim.scm (neovim): Update to 0.4.2.
[arguments]: Remove "patch-tic" phase; add "lua-luv" to "set-lua-paths" phase.
[inputs]: Add lua5.1-luv.
 2019-09-16 12:26:26 +02:00
Ricardo Wurmus 9ad3d67981
gnu: Add lua-luv. 
* gnu/packages/lua.scm (lua-luv, lua5.1-luv, lua5.2-luv): New variables.
(make-lua-luv): New procedure.
 2019-09-16 12:26:25 +02:00
Ricardo Wurmus 456da45c1b
gnu: libvterm: Update to 0.1. 
* gnu/packages/terminals.scm (libvterm): Update to 0.1.
 2019-09-16 12:26:25 +02:00
Martin Becze ad6e168b3f
gnu: evolution: Wrap with required path variables. 
Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36896>.

* gnu/packages/gnome.scm (evolution)[arguments]: Add a ‘wrap-program’
phase.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-09-16 12:17:48 +02:00
Pierre Neidhardt eb2e9ef4d9
gnu: Add cl-prevalence. 
* gnu/packages/lisp.scm (cl-prevalence, sbcl-cl-prevalence, ecl-cl-prevalence): New variables.
 2019-09-16 11:58:40 +02:00
Pierre Neidhardt 5216632a95
gnu: Add s-sysdeps. 
* gnu/packages/lisp.scm (sbcl-s-sysdeps, cl-s-sysdeps, ecl-s-sysdeps): New variables.
 2019-09-16 11:58:21 +02:00
Kyle Andrews 1d25447e8b
gnu: Add herbstluftwm. 
* gnu/packages/wm.scm (herbstluftwm): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:57:58 +02:00
Brian Leung a1a4a40715
gnu: emacs-dumb-jump: Update to 0.5.3. 
* gnu/packages/emacs-xyz.scm (emacs-dumb-jump): Update to 0.5.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:30:16 +02:00
Kyle Meyer 1ece099d5c
gnu: git-annex: Update to 7.20190912. 
* gnu/packages/haskell-apps.scm (git-annex): Update 7.20190912.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:27:36 +02:00
Kyle Meyer f2a3ff8591
gnu: git-annex: Build with MagicMime support. 
git-annex has a mechanism for configuring whether a file is added to the annex
or stored in git.  Building with MagicMime support makes it possible to
condition the behavior on a file's MIME type.

* gnu/packages/haskell-apps.scm (git-annex)[inputs]: Add ghc-magic.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:27:32 +02:00
Kyle Meyer e405912c20
gnu: Add ghc-magic. 
* gnu/packages/haskell-xyz.scm (ghc-magic): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:27:27 +02:00
Kyle Meyer 7e772cb66d
gnu: git-annex: Update license. 
* gnu/packages/haskell-apps.scm (git-annex)[license]: Update main license to
AGPLv3+ and include other licenses mentioned in the package's COPYRIGHT file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-16 10:27:10 +02:00
Rutger Helling fb6e550d6b
gnu: retroarch: Update to 1.7.8.4. 
* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.4.
 2019-09-16 08:25:04 +02:00
Rutger Helling eca0f3d070
gnu: mgba: Update to 0.7.3. 
* gnu/packages/emulators.scm (mgba): Update to 0.7.3.
 2019-09-16 08:25:04 +02:00
Ricardo Wurmus d80a15696b
gnu: Add r-variancepartition. 
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
 2019-09-15 22:57:47 +02:00
Ricardo Wurmus 2a360cf6ac
gnu: Add r-wavetiling. 
* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
 2019-09-15 22:54:21 +02:00
Ricardo Wurmus f5349b4d5a
gnu: Add r-genomegraphs. 
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
 2019-09-15 22:51:52 +02:00
Ricardo Wurmus 4c63eeb8a4
gnu: Add r-oligo. 
* gnu/packages/bioconductor.scm (r-oligo): New variable.
 2019-09-15 22:50:31 +02:00
Ricardo Wurmus d6a5d9b24f
gnu: Add r-affxparser. 
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
 2019-09-15 22:50:25 +02:00
Ricardo Wurmus df8576e5c9
gnu: Add r-variantfiltering. 
* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
 2019-09-15 22:41:03 +02:00
Ricardo Wurmus fc3719cc0f
gnu: Add r-shinythemes. 
* gnu/packages/cran.scm (r-shinythemes): New variable.
 2019-09-15 22:40:25 +02:00
Ricardo Wurmus 41b8b05c9e
gnu: Add r-shinytree. 
* gnu/packages/cran.scm (r-shinytree): New variable.
 2019-09-15 22:33:50 +02:00
Ricardo Wurmus 4112ff7e74
gnu: Add js-requirejs. 
* gnu/packages/javascript.scm (js-requirejs): New variable.
 2019-09-15 21:19:53 +02:00
Ricardo Wurmus bb0024dc69
gnu: Add r-reqon. 
* gnu/packages/bioconductor.scm (r-reqon): New variable.
 2019-09-15 21:07:57 +02:00
Ricardo Wurmus e5dfcd8e26
gnu: Add r-seqbias. 
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
 2019-09-15 21:07:56 +02:00
Ricardo Wurmus 12105c6c3a
gnu: Add r-affycoretools. 
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
 2019-09-15 20:58:26 +02:00
Ricardo Wurmus 01c7ba9982
gnu: Add r-oligoclasses. 
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
 2019-09-15 20:58:26 +02:00
Ricardo Wurmus 15184fb386
gnu: Add r-reportingtools. 
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
 2019-09-15 20:58:25 +02:00
Ricardo Wurmus 83b4209122
gnu: Add r-pfam-db. 
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
 2019-09-15 20:57:26 +02:00
Ricardo Wurmus 4ca2d6c1a6
gnu: Add r-affycontam. 
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
 2019-09-15 20:53:27 +02:00
Ricardo Wurmus 5094aa9472
gnu: Add r-affycompatible. 
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
 2019-09-15 20:53:21 +02:00
Ricardo Wurmus 5cf940de21
gnu: Add r-affycomp. 
* gnu/packages/bioconductor.scm (r-affycomp): New variable.
 2019-09-15 20:53:14 +02:00
Ricardo Wurmus 53b1e10f23
gnu: Add r-affydata. 
* gnu/packages/bioconductor.scm (r-affydata): New variable.
 2019-09-15 20:53:01 +02:00
Ricardo Wurmus 853211a51b
gnu: Add r-timeseriesexperiment. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
 2019-09-15 20:42:41 +02:00
Ricardo Wurmus 739b2d10f0
gnu: Add r-wavcluster. 
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
 2019-09-15 20:41:01 +02:00
Ricardo Wurmus d77e69e9e1
gnu: r-spam: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
 2019-09-15 16:15:37 +02:00
Ricardo Wurmus e48e476f41
gnu: r-feather: Update to 0.3.5. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
 2019-09-15 16:15:37 +02:00
Giacomo Leidi 21fc601295
gnu: emacs-zerodark-theme: Update to 4.6. 
* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6.
[source]: Update to new source uri.
 2019-09-15 15:29:18 +03:00
Ricardo Wurmus 991c44109f
gnu: Add yubico-pam. 
* gnu/packages/authentication.scm (yubico-pam): New variable.
 2019-09-15 09:28:24 +02:00
Ricardo Wurmus 9eac315069
gnu: r-delayedmatrixstats: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
 2019-09-14 23:39:39 +02:00
Ricardo Wurmus 82e343d14a
gnu: r-rhdf5lib: Update to 1.6.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
 2019-09-14 23:39:25 +02:00
Ricardo Wurmus cd25e29616
gnu: r-rtracklayer: Update to 1.44.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
 2019-09-14 23:39:20 +02:00
Ricardo Wurmus 146f0ba5d1
gnu: r-genomicranges: Update to 1.36.1. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
 2019-09-14 23:39:12 +02:00
Ricardo Wurmus 7f518ef70b
gnu: r-s4vectors: Update to 0.22.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
 2019-09-14 23:39:08 +02:00
Ricardo Wurmus 11f973e093
gnu: r-mixomics: Update to 6.8.4. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
 2019-09-14 23:39:03 +02:00
Ricardo Wurmus f8fb5b75c9
gnu: r-gtrellis: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
 2019-09-14 23:38:58 +02:00
Ricardo Wurmus ec0270b1e9
gnu: r-regioner: Update to 1.16.4. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
 2019-09-14 23:38:51 +02:00
Björn Höfling cd75c487c8
gnu: Add emacs-elixir-mode. 
* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
 2019-09-14 19:44:40 +02:00
Rutger Helling fda8ed0eb1
gnu: wine-staging: Update to 4.16. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16.
* gnu/packages/wine.scm (wine-staging): Update to 4.16.
 2019-09-14 13:01:28 +02:00
Ricardo Wurmus 981dcc3b0c
gnu: r-tidyr: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0.
[propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs.
 2019-09-14 00:37:47 +02:00
Ricardo Wurmus 17f3960f28
gnu: r-diffusionmap: Update to 1.2.0. 
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus fd399b7a83
gnu: r-seqinr: Update to 3.6-1. 
* gnu/packages/cran.scm (r-seqinr): Update to 3.6-1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus f5b1354fdb
gnu: Add r-lifecycle. 
* gnu/packages/cran.scm (r-lifecycle): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus cd3ba9c8c7
gnu: r-huge: Update to 1.3.3. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.3.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus ac50956f31
gnu: r-tidytree: Update to 0.2.7. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.7.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus aef5e2aadd
gnu: r-activity: Update to 1.3. 
* gnu/packages/cran.scm (r-activity): Update to 1.3.
[propagated-inputs]: Add r-insol.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus d72da21d54
gnu: r-sjplot: Update to 2.7.1. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.7.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 664e15ed8f
gnu: r-sjstats: Update to 0.17.6. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.6.
[propagated-inputs]: Add r-parameters.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 28110e6842
gnu: r-emmeans: Update to 1.4.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 3ab3f7f3bb
gnu: r-sjlabelled: Update to 1.1.1. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 4557f44755
gnu: r-circlize: Update to 0.4.8. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.8.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a1f4399438
gnu: r-httpuv: Update to 1.5.2. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.2.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus 5ad9da9ab3
gnu: Add r-insol. 
* gnu/packages/cran.scm (r-insol): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a0244ef000
gnu: Add r-rgdal. 
* gnu/packages/cran.scm (r-rgdal): New variable.
 2019-09-14 00:37:46 +02:00
Ricardo Wurmus a5a79dd0b8
gnu: Add r-parameters. 
* gnu/packages/cran.scm (r-parameters): New variable.
 2019-09-14 00:37:45 +02:00
Efraim Flashner 18a613fb29
gnu: gnujump: Add desktop file. 
This fixes bug#37069.

* gnu/packages/games.scm (gnujump)[arguments]: Add custom
'create-desktop-entry phase to install a desktop file.
 2019-09-13 17:07:16 +03:00
Efraim Flashner dbb0b06eb4
gnu: tipp10: Fix path in desktop entry. 
* gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to
hardcode executable path.
 2019-09-13 17:07:13 +03:00
Paul Garlick 0746c33eff
gnu: gmsh: Update home page. 
This addresses a 'guix lint' warning.

* gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL
redirection.
 2019-09-13 14:53:57 +01:00
Efraim Flashner f61f424d5b
gnu: mcron: Update to 1.1.2. 
* gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2.
[arguments]: Remove custom 'set-timezone phase.
[native-inputs]: Add autoconf, automake, help2man, texinfo.
[inputs]: Remove ed, which.
 2019-09-13 16:02:31 +03:00
Efraim Flashner f0e149752a
gnu: shellutils.scm: Sort module inputs. 
* gnu/packages/shellutils.scm: Sort module inputs alphabetically.
 2019-09-13 15:39:43 +03:00
Collin J. Doering 8ebd56ea75
gnu: Add zsh-autosuggestions. 
* gnu/packages/shellutils.scm (zsh-autosuggestions): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-13 15:39:34 +03:00
Collin J. Doering 9c4cb1ef4c
gnu: Add ruby-rspec-wait. 
* gnu/packages/ruby.scm (ruby-rspec-wait): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-13 15:39:28 +03:00
Collin J. Doering f69f37d54a
gnu: Add sh-z shell tool 
* gnu/packages/shellutils.scm (sh-z): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-13 10:50:11 +02:00
L p R n d n a00a3132c7
gnu: Thunar: Update to 1.8.9. 
* gnu/packages/xfce.scm (thunar): Update to 1.8.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-13 10:50:11 +02:00
Ludovic Courtès ba05be2249
gnu: openblas: Set 'NUM_THREADS'. 
Until now, OpenBLAS would use at most the N threads, where N is the
number of cores that happened to be available on the build
machine (typically N=8).

* gnu/packages/maths.scm (openblas/fixed-num-threads): New variable.
(openblas)[replacement]: New field.
(openblas-ilp64): Use 'package/inherit'.
 2019-09-13 10:50:11 +02:00
Ricardo Wurmus 5ad0a45221
gnu: python-matplotlib-documentation: Add missing input. 
* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]:
Add python-sphinx-copybutton.
(python2-matplotlib-documentation)[native-inputs]: Remove
python-sphinx-copybutton.
 2019-09-13 00:44:57 +02:00
Ricardo Wurmus bcb22b3624
gnu: Add python-sphinx-copybutton. 
* gnu/packages/sphinx.scm (python-sphinx-copybutton): New variable.
 2019-09-13 00:44:57 +02:00
Ricardo Wurmus 5ea654cfe0
gnu: python-matplotlib: Update to 3.1.1. 
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.1.
[native-inputs]: Remove python-nose; add python-pytest and unzip; add
jquery-ui.
[arguments]: Add build phases "fix-and-disable-failing-tests" and
"install-jquery-ui", and move the "check" phase after the "install" phase;
use the default backend in setup.cfg.
(python2-matplotlib): Keep at version 2.2.3.
(python-matplotlib-documentation)[arguments]: Remove "check" phase.
 2019-09-13 00:44:57 +02:00
Wiktor Żelazny 16fddf17f5
gnu: Add r-assertr. 
* gnu/packages/cran.scm (r-assertr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-09-13 00:44:57 +02:00
Brian Leung 86ce3691e1
gnu: emacs-interactive-align: Update to 0.4.2. 
* gnu/packages/emacs-xyz.scm (emacs-interactive-align): Update to 0.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-12 23:23:47 +02:00
Tim Gesthuizen 2151e04c1a
gnu: Add emacs-doom-themes. 
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): New variable.

Co-authored-by: Brett Gilio <brettg@posteo.net>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-12 23:22:19 +02:00
Paul Garlick abed5df777
gnu: gmsh: Fetch source from Git. 
* gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH.
 2019-09-12 16:21:31 +01:00
Maxim Cournoyer e2fb29b792
gnu: python-pytest-virtualenv: Enable tests. 
* gnu/packages/python-check.scm (python-pytest-virtualenv)
[phases]{patch-virtualenv-executable}: New phase.
[propagated-inputs]: Move python-virtualenv from here...
[inputs]: ...to here.
 2019-09-13 00:10:35 +09:00